Query psy2165
Match_columns 145
No_of_seqs 154 out of 231
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 17:58:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3547|consensus 100.0 3.8E-40 8.3E-45 292.5 9.1 113 1-114 269-383 (450)
2 PF01062 Bestrophin: Bestrophi 98.9 1.1E-09 2.3E-14 88.8 3.6 47 2-48 243-292 (293)
3 COG3781 Predicted membrane pro 52.4 25 0.00054 31.3 4.4 54 5-62 240-293 (306)
4 KOG2728|consensus 40.3 30 0.00065 30.7 3.1 28 3-33 139-166 (302)
5 PF08251 Mastoparan_2: Mastopa 39.7 21 0.00045 18.5 1.2 11 18-28 2-12 (14)
6 COG2833 Uncharacterized protei 37.1 23 0.0005 31.0 1.9 28 12-39 105-142 (268)
7 PF08707 PriCT_2: Primase C te 25.5 46 0.00099 22.7 1.5 24 16-39 17-40 (78)
8 PF03878 YIF1: YIF1; InterPro 25.3 43 0.00093 28.3 1.6 23 2-24 86-108 (240)
9 PF14004 DUF4227: Protein of u 15.1 2E+02 0.0044 20.4 2.9 24 5-28 10-33 (71)
10 KOG2546|consensus 12.9 29 0.00062 32.6 -2.4 61 38-98 5-76 (483)
No 1
>KOG3547|consensus
Probab=100.00 E-value=3.8e-40 Score=292.52 Aligned_cols=113 Identities=50% Similarity=0.840 Sum_probs=99.8
Q ss_pred CceeechhhHHHHHHHHHHHHHHHHHhcCCCCCCChhhHHHHHHhhHHHHHHHHhhhhccCCCccccccCCCCCCCCCCc
Q psy2165 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVPKDLPY 80 (145)
Q Consensus 1 iD~y~Pv~t~lQF~Fy~GWLKVae~llNPFGeDDDDFE~n~lidrnl~v~~~iVD~~~~~~P~l~kD~fW~~~~~~~lPy 80 (145)
+|+|||+||++||+||||||||||.|+|||||||||||||||||||+++|++|||++|+++|+|.+|.||++..+. +.|
T Consensus 269 id~~fPi~T~lQFiF~vGWmKVaE~LlNP~GEDDDDFE~N~liDRNl~vgl~IVD~~~~~~P~l~~D~f~d~~~~~-p~y 347 (450)
T KOG3547|consen 269 IDLYFPIMTILQFIFYVGWLKVAEVLLNPLGEDDDDFECNYLIDRNLTVGLAIVDEMHDDHPELEKDQFWDDVDVL-PLY 347 (450)
T ss_pred cceeehhHHHHHHHHHhhHHHHHHHHhCCCCCCcchhhHHHhhhhhHHHHHHHhhhhhccCccccccccCCCCCcC-CCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999997663 558
Q ss_pred chhhhhc-cCCCCCCCcccceeccccccc-ccccCC
Q psy2165 81 TLASECY-RRSEPKGSAEFYKVKEADSLY-ANITSR 114 (145)
Q Consensus 81 T~aS~~~-~~~~~~GS~~~~~v~~~d~~~-~n~~~~ 114 (145)
+.+|... +.+.+.||++++++.+.+... .++.++
T Consensus 348 ~~~s~~~~~~~~~~gS~~~~~~~~~~~~~~v~~~~~ 383 (450)
T KOG3547|consen 348 SEASADSKNNHALVGSAANVSLAKEDEENEVRMVPR 383 (450)
T ss_pred chhhhhccccccCCCChhhhhccccccccceeeccc
Confidence 8877554 455689999999988877655 344443
No 2
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=98.89 E-value=1.1e-09 Score=88.81 Aligned_cols=47 Identities=34% Similarity=0.641 Sum_probs=44.6
Q ss_pred ceeechhhHHHHHHHHHHHHHHHHHhcCCCCCCChhhHHHH---HHhhHH
Q psy2165 2 DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWL---IDRHIK 48 (145)
Q Consensus 2 D~y~Pv~t~lQF~Fy~GWLKVae~llNPFGeDDDDFE~n~l---idrnl~ 48 (145)
+.+.|+++++++++|+||.++|+.+.||||.|++|++++.+ |+||++
T Consensus 243 ~~~~~~~~~l~~~~~~gl~~ig~~ledPFg~d~~dlpl~~~~~~ie~~l~ 292 (293)
T PF01062_consen 243 GWLTPPITFLVSFFFLGLEEIGEELEDPFGNDPNDLPLDAICRTIERNLR 292 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCcCcHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999 999986
No 3
>COG3781 Predicted membrane protein [Function unknown]
Probab=52.37 E-value=25 Score=31.26 Aligned_cols=54 Identities=28% Similarity=0.548 Sum_probs=39.9
Q ss_pred echhhHHHHHHHHHHHHHHHHHhcCCCCCCChhhHHHHHHhhHHHHHHHHhhhhccCC
Q psy2165 5 IPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHP 62 (145)
Q Consensus 5 ~Pv~t~lQF~Fy~GWLKVae~llNPFGeDDDDFE~n~lidrnl~v~~~iVD~~~~~~P 62 (145)
-|+++.+==+-++|-=-.||.+=||||.|+.|.-++-+.. -++ .-|+++-++.|
T Consensus 240 Tp~~s~lIayTffgleaia~EiEdPFGte~NDLpLD~ic~-~ie---~~l~dl~~e~p 293 (306)
T COG3781 240 TPFFSVLIAYTFFGLEAIAEEIEDPFGTEANDLPLDAICN-TIE---INLLDLIGEAP 293 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCccCCCCCcCcHHHHHH-HHH---HHHHHHhCCCC
Confidence 4778887778888988999999999999999998876542 222 22446655544
No 4
>KOG2728|consensus
Probab=40.29 E-value=30 Score=30.68 Aligned_cols=28 Identities=25% Similarity=0.592 Sum_probs=24.2
Q ss_pred eeechhhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy2165 3 VYIPIFTVLQFCFYLGWLKVAEVLIGPFGED 33 (145)
Q Consensus 3 ~y~Pv~t~lQF~Fy~GWLKVae~llNPFGeD 33 (145)
+|+|+-|+-|+ |--||-+...+||+|..
T Consensus 139 L~vpFtT~~~Y---l~~L~aiae~Ln~~~sr 166 (302)
T KOG2728|consen 139 LYVPFTTLADY---LWLLRAIAEALNPLGSR 166 (302)
T ss_pred EEEecchHHHH---HHHHHHHHHHhccccch
Confidence 68999999994 56689999999999975
No 5
>PF08251 Mastoparan_2: Mastoparan peptide; InterPro: IPR013214 Mastoparan (MP) peptides I, II and III are extracted from the venom gland of Protopolybia exigua (Neotropical social wasp). They are tetradecapeptides presenting from seven to ten hydrophobic amino acid residues and from two to four lysine residues in their primary sequences. These peptides cause the degranulation of mast cells. Protopolybia-MP-I also causes haemolysis of erythrocytes.
Probab=39.71 E-value=21 Score=18.54 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=8.9
Q ss_pred HHHHHHHHHhc
Q psy2165 18 GWLKVAEVLIG 28 (145)
Q Consensus 18 GWLKVae~llN 28 (145)
-|||.+...++
T Consensus 2 nwlklgk~v~d 12 (14)
T PF08251_consen 2 NWLKLGKMVID 12 (14)
T ss_pred cHHHHHHHHHh
Confidence 59999988764
No 6
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.11 E-value=23 Score=30.96 Aligned_cols=28 Identities=29% Similarity=0.550 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHH----------HHHhcCCCCCCChhhH
Q psy2165 12 QFCFYLGWLKVA----------EVLIGPFGEDDDDIEL 39 (145)
Q Consensus 12 QF~Fy~GWLKVa----------e~llNPFGeDDDDFE~ 39 (145)
-+=||-|||||| ..-+.-+|-|=-||+.
T Consensus 105 p~~F~~dWm~VA~EE~~HF~Ll~~~L~~LG~~YGDfpa 142 (268)
T COG2833 105 PLQFYDDWMRVADEEAKHFRLLRERLKSLGYDYGDFPA 142 (268)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcc
Confidence 345899999999 3456678888777765
No 7
>PF08707 PriCT_2: Primase C terminal 2 (PriCT-2) ; InterPro: IPR014819 This alpha helical domain is found at the C-terminal of primases. ; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=25.47 E-value=46 Score=22.69 Aligned_cols=24 Identities=29% Similarity=0.743 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhH
Q psy2165 16 YLGWLKVAEVLIGPFGEDDDDIEL 39 (145)
Q Consensus 16 y~GWLKVae~llNPFGeDDDDFE~ 39 (145)
|==|+||+.+|-+=|+.+++-+++
T Consensus 17 y~~W~~vg~Al~~~~~g~~~g~~l 40 (78)
T PF08707_consen 17 YDDWIRVGMALKHEFGGGEEGLDL 40 (78)
T ss_pred HHHHHHHHHHHHHhccCChHHHHH
Confidence 556999999999999765544443
No 8
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=25.30 E-value=43 Score=28.35 Aligned_cols=23 Identities=22% Similarity=0.587 Sum_probs=20.5
Q ss_pred ceeechhhHHHHHHHHHHHHHHH
Q psy2165 2 DVYIPIFTVLQFCFYLGWLKVAE 24 (145)
Q Consensus 2 D~y~Pv~t~lQF~Fy~GWLKVae 24 (145)
|+|+|+|..+-++...|...-.+
T Consensus 86 DLYIPlMa~vTYiLl~g~~~G~~ 108 (240)
T PF03878_consen 86 DLYIPLMAFVTYILLSGLILGLQ 108 (240)
T ss_pred ccccchHHHHHHHHHHHHHHHhc
Confidence 89999999999999999877653
No 9
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=15.13 E-value=2e+02 Score=20.35 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=18.8
Q ss_pred echhhHHHHHHHHHHHHHHHHHhc
Q psy2165 5 IPIFTVLQFCFYLGWLKVAEVLIG 28 (145)
Q Consensus 5 ~Pv~t~lQF~Fy~GWLKVae~llN 28 (145)
|=+||.+-.+||.|++=|++.+.+
T Consensus 10 ~~LF~~~T~lfYy~~~w~~~~~~~ 33 (71)
T PF14004_consen 10 FLLFTGCTLLFYYAILWVSDEYEP 33 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457889999999998888776643
No 10
>KOG2546|consensus
Probab=12.93 E-value=29 Score=32.61 Aligned_cols=61 Identities=28% Similarity=0.337 Sum_probs=43.9
Q ss_pred hHHHHHHhhHHHHHHHHhhhhccCCCcc---ccccCCCCCCCCC-----Ccc---hhhhhccCCCCCCCccc
Q psy2165 38 ELNWLIDRHIKAAYMIVDEMHEEHPELL---KDQYWDEVVPKDL-----PYT---LASECYRRSEPKGSAEF 98 (145)
Q Consensus 38 E~n~lidrnl~v~~~iVD~~~~~~P~l~---kD~fW~~~~~~~l-----PyT---~aS~~~~~~~~~GS~~~ 98 (145)
|++.|++++|-.+....-+.|+++|.+. .|.||.....++- -|| +||..|..+...|++..
T Consensus 5 elq~lie~eIp~gR~al~~s~~nL~rVadycednYiQs~~kk~aleetk~~ttQslasvaYqIN~la~~~l~ 76 (483)
T KOG2546|consen 5 ELQSLIESEIPDGRKALRSSYDNLPRVADYCEDNYIQSADKKAALEETKAYTTQSLASVAYQINTLAGHALR 76 (483)
T ss_pred HHHHHHHHhccccHHHHHHHHHhhHhhhhhhhhchhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999998888898888774 7999985432111 133 46666777766666643
Done!