Query psy2165
Match_columns 145
No_of_seqs 154 out of 231
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 17:59:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2koe_A Human cannabinoid recep 11.0 2E+02 0.0069 15.4 2.5 16 15-30 4-19 (40)
2 3im4_C Dual specificity A kina 10.9 1E+02 0.0035 19.5 1.3 7 49-55 21-27 (45)
3 3pr6_A Trapp-associated protei 9.7 1.6E+02 0.0053 22.7 2.2 26 24-49 123-148 (162)
4 2blf_B SORB, sulfite\:cytochro 9.6 3.1E+02 0.011 17.4 3.4 28 17-44 48-75 (81)
5 2hwn_E A kinase binding peptid 9.1 1.4E+02 0.0048 16.9 1.3 10 48-57 7-16 (26)
6 2z5s_M MDM4 protein, zebrafish 8.3 1.6E+02 0.0053 22.6 1.7 25 7-31 43-67 (140)
7 3nuf_A PRD-containing transcri 7.7 2.1E+02 0.0072 21.3 2.1 29 20-50 87-115 (119)
8 2cc3_A Protein VIRB8; secretio 7.1 1E+02 0.0034 22.2 0.1 11 21-31 119-129 (150)
9 1rq6_A 30S ribosomal protein S 6.4 4.5E+02 0.015 17.2 3.1 22 21-42 11-33 (62)
10 3arc_E Cytochrome B559 subunit 5.4 2.8E+02 0.0096 19.5 1.6 15 12-26 27-41 (83)
No 1
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=10.99 E-value=2e+02 Score=15.43 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcCC
Q psy2165 15 FYLGWLKVAEVLIGPF 30 (145)
Q Consensus 15 Fy~GWLKVae~llNPF 30 (145)
....|+=..-.++||+
T Consensus 4 ~~~~~l~~~ns~lNPi 19 (40)
T 2koe_A 4 AFASMLCLLNSTVNPI 19 (40)
T ss_dssp HHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456777778889997
No 2
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=10.85 E-value=1e+02 Score=19.54 Aligned_cols=7 Identities=57% Similarity=0.558 Sum_probs=2.9
Q ss_pred HHHHHHh
Q psy2165 49 AAYMIVD 55 (145)
Q Consensus 49 v~~~iVD 55 (145)
++-+||.
T Consensus 21 IA~MIV~ 27 (45)
T 3im4_C 21 IAKMIVS 27 (45)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 3
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=9.66 E-value=1.6e+02 Score=22.72 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=21.9
Q ss_pred HHHhcCCCCCCChhhHHHHHHhhHHH
Q psy2165 24 EVLIGPFGEDDDDIELNWLIDRHIKA 49 (145)
Q Consensus 24 e~llNPFGeDDDDFE~n~lidrnl~v 49 (145)
..++|||-..+|+=++...+++.+..
T Consensus 123 k~l~NPFy~~~d~~~~~~~l~~~~~~ 148 (162)
T 3pr6_A 123 RVKCNPLLVSGDEKSIIKSLERKFDE 148 (162)
T ss_dssp HHHTCTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCchHHHHHHHHHHHHH
Confidence 46899999999998888888887654
No 4
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=9.59 E-value=3.1e+02 Score=17.43 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCCCCCChhhHHHHHH
Q psy2165 17 LGWLKVAEVLIGPFGEDDDDIELNWLID 44 (145)
Q Consensus 17 ~GWLKVae~llNPFGeDDDDFE~n~lid 44 (145)
-+|-++-..|.+-||..-+|=|...|++
T Consensus 48 ~~W~~~v~~M~~~~g~~ls~~e~~~I~~ 75 (81)
T 2blf_B 48 AFWDAEVQKMIKVYHAPVDEADAKAIAD 75 (81)
T ss_dssp HHHHHHHHHHHHTSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4699999999999998777766665554
No 5
>2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus}
Probab=9.09 E-value=1.4e+02 Score=16.88 Aligned_cols=10 Identities=50% Similarity=0.640 Sum_probs=4.7
Q ss_pred HHHHHHHhhh
Q psy2165 48 KAAYMIVDEM 57 (145)
Q Consensus 48 ~v~~~iVD~~ 57 (145)
+++-+||.+.
T Consensus 7 kiakmiv~dv 16 (26)
T 2hwn_E 7 KIAKMIVSDV 16 (26)
T ss_pred HHHHHHHHHH
Confidence 3444555443
No 6
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=8.28 E-value=1.6e+02 Score=22.64 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCC
Q psy2165 7 IFTVLQFCFYLGWLKVAEVLIGPFG 31 (145)
Q Consensus 7 v~t~lQF~Fy~GWLKVae~llNPFG 31 (145)
+||+.|.++|+|=.=...+|.||=-
T Consensus 43 ~fT~keVm~YLGqYIm~KqLYD~~~ 67 (140)
T 2z5s_M 43 VFTLKEVMHYLGQYIMMKQLYDKQR 67 (140)
T ss_dssp CBCHHHHHHHHHHHHHHHTCBCSSS
T ss_pred eeeHHHHHHHHHHHHHHhhhccccc
Confidence 6899999999998888888888743
No 7
>3nuf_A PRD-containing transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 1.38A {Lactobacillus casei}
Probab=7.67 E-value=2.1e+02 Score=21.27 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCCCCCChhhHHHHHHhhHHHH
Q psy2165 20 LKVAEVLIGPFGEDDDDIELNWLIDRHIKAA 50 (145)
Q Consensus 20 LKVae~llNPFGeDDDDFE~n~lidrnl~v~ 50 (145)
++.|+.++++||+ =+-|=.||+.=|.+++
T Consensus 87 ~~LA~~Vv~~~g~--L~~eE~~LLSVHFEvA 115 (119)
T 3nuf_A 87 LDLADQVVQHIGH--LEVAEKYVLSIHFEAA 115 (119)
T ss_dssp HHHHHHHHHHHCS--SCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence 6789999999999 3334578998888876
No 8
>2cc3_A Protein VIRB8; secretion system, type IV secretion system, consurf; 2.2A {Agrobacterium tumefaciens} SCOP: d.17.4.26
Probab=7.09 E-value=1e+02 Score=22.23 Aligned_cols=11 Identities=27% Similarity=0.108 Sum_probs=8.0
Q ss_pred HHHHHHhcCCC
Q psy2165 21 KVAEVLIGPFG 31 (145)
Q Consensus 21 KVae~llNPFG 31 (145)
+-++.++||||
T Consensus 119 ~~~~r~~NPlG 129 (150)
T 2cc3_A 119 PGRLRLTNPGG 129 (150)
T ss_dssp CHHHHTTCTTC
T ss_pred CHHHHhhCCCc
Confidence 34566889988
No 9
>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1
Probab=6.39 E-value=4.5e+02 Score=17.23 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=17.6
Q ss_pred HHHHHHhcCCCCC-CChhhHHHH
Q psy2165 21 KVAEVLIGPFGED-DDDIELNWL 42 (145)
Q Consensus 21 KVae~llNPFGeD-DDDFE~n~l 42 (145)
|+|..|+.=+.+- .+|||.|-.
T Consensus 11 ~~a~~liekY~~~~t~DF~~NK~ 33 (62)
T 1rq6_A 11 RIAKEMIETHPGKFTDDFDTNKK 33 (62)
T ss_dssp HHHHHHHTTSCCCCCCCHHHHHH
T ss_pred HHHHHHHHHhHhHhcCCHHHhhH
Confidence 6788898887775 889998864
No 10
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=5.38 E-value=2.8e+02 Score=19.50 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy2165 12 QFCFYLGWLKVAEVL 26 (145)
Q Consensus 12 QF~Fy~GWLKVae~l 26 (145)
--+|..|||=|+.-|
T Consensus 27 PslFiaGwLFVstGL 41 (83)
T 3arc_E 27 PALFIAGWLFVSTGL 41 (83)
T ss_dssp HHHHHHHHHHHHTSH
T ss_pred chHHHhhhhhhccCc
Confidence 446789999988544
Done!