Query psy2165
Match_columns 145
No_of_seqs 154 out of 231
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 17:59:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2165.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2165hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okkd1 a.24.13.1 (D:21-78) Si 22.3 36 0.0026 20.5 3.0 33 28-61 2-40 (58)
2 d2axia1 a.42.1.1 (A:25-109) MD 7.4 72 0.0053 20.9 1.2 23 7-29 23-45 (85)
3 d1pbya1 a.3.1.7 (A:1-85) Quino 7.3 1.5E+02 0.011 18.3 2.8 27 18-44 35-61 (85)
4 d1ttva_ a.42.1.1 (A:) MDM2 {Af 6.9 95 0.0069 21.1 1.7 26 7-32 31-56 (107)
5 d1q90l_ f.23.24.1 (L:) PetL su 6.3 78 0.0057 17.2 0.7 12 12-23 18-29 (32)
6 d2axte1 f.23.38.1 (E:3-84) Cyt 6.1 89 0.0065 20.3 1.1 16 11-26 25-40 (82)
7 d1d1qa_ c.44.1.1 (A:) Tyrosine 4.5 81 0.0059 20.5 0.0 22 25-46 128-150 (159)
8 d2uuia1 f.56.1.1 (A:2-147) Leu 4.3 2.9E+02 0.021 18.4 3.0 39 6-46 11-54 (146)
9 d1rq6a_ a.4.15.1 (A:) ribosoma 4.3 2.8E+02 0.02 16.6 2.6 22 21-42 11-33 (62)
10 d2j3wa1 d.110.4.3 (A:1-140) Se 4.2 2E+02 0.014 19.1 1.9 25 24-49 108-132 (140)
No 1
>d1okkd1 a.24.13.1 (D:21-78) Signal recognition particle receptor, FtsY {Thermus aquaticus [TaxId: 271]}
Probab=22.32 E-value=36 Score=20.49 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=23.5
Q ss_pred cCCCCCCChhhHHHHH------HhhHHHHHHHHhhhhccC
Q psy2165 28 GPFGEDDDDIELNWLI------DRHIKAAYMIVDEMHEEH 61 (145)
Q Consensus 28 NPFGeDDDDFE~n~li------drnl~v~~~iVD~~~~~~ 61 (145)
-|||.+||++ +..|= |=-++++..|++.+..+.
T Consensus 2 ~~~g~~~d~~-leeLEe~Li~ADvGv~tt~~ii~~Lr~~~ 40 (58)
T d1okkd1 2 IPWGGNLEEV-LEELEMALLAADVGLSATEEILQEVRASG 40 (58)
T ss_dssp CCTTSCHHHH-HHHHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCcHHH-HHHHHHHHHHcccCHHHHHHHHHHHHHHH
Confidence 3899999987 44332 334678899999887664
No 2
>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.41 E-value=72 Score=20.94 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcC
Q psy2165 7 IFTVLQFCFYLGWLKVAEVLIGP 29 (145)
Q Consensus 7 v~t~lQF~Fy~GWLKVae~llNP 29 (145)
+||+-|.+||+|=.=-...|.||
T Consensus 23 ~fT~kqVm~yLgqYIm~K~LyD~ 45 (85)
T d2axia1 23 TYTMKEVLFYLGQYIMTKRLYDE 45 (85)
T ss_dssp CEEHHHHHHHHHHHHHHHTCEET
T ss_pred eeeHHHHHHHHHHHHHHHHhcCc
Confidence 58999999999977777777777
No 3
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=7.29 E-value=1.5e+02 Score=18.32 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCCCCCChhhHHHHHH
Q psy2165 18 GWLKVAEVLIGPFGEDDDDIELNWLID 44 (145)
Q Consensus 18 GWLKVae~llNPFGeDDDDFE~n~lid 44 (145)
||..+-+.|++-+|.--++-|..-|++
T Consensus 35 ~W~~~V~~M~~~~Ga~l~~~e~~~Iv~ 61 (85)
T d1pbya1 35 GWDMTVTRMMRNHGVALEPEERAAIVR 61 (85)
T ss_dssp HHHHHHHHHHHHSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 799999999999998777777766655
No 4
>d1ttva_ a.42.1.1 (A:) MDM2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=6.89 E-value=95 Score=21.10 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCC
Q psy2165 7 IFTVLQFCFYLGWLKVAEVLIGPFGE 32 (145)
Q Consensus 7 v~t~lQF~Fy~GWLKVae~llNPFGe 32 (145)
+||+-|.+||+|=.=-...|.||=-.
T Consensus 31 ~fT~keVm~yLgqYIm~K~LyD~~~q 56 (107)
T d1ttva_ 31 TFTMKEVLYHLGQYIMAKQLYDEKQQ 56 (107)
T ss_dssp CBCHHHHHHHHHHHHHHHTCBCSSCT
T ss_pred eeeHHHHHHHHHHHHHHHHhcCcccC
Confidence 58999999999977777777777433
No 5
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.29 E-value=78 Score=17.19 Aligned_cols=12 Identities=50% Similarity=0.816 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q psy2165 12 QFCFYLGWLKVA 23 (145)
Q Consensus 12 QF~Fy~GWLKVa 23 (145)
..=+|+|.|||.
T Consensus 18 tlgiylgllkvv 29 (32)
T d1q90l_ 18 TLGIYLGLLKVV 29 (32)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH
Confidence 345789999984
No 6
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.06 E-value=89 Score=20.35 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2165 11 LQFCFYLGWLKVAEVL 26 (145)
Q Consensus 11 lQF~Fy~GWLKVae~l 26 (145)
+--+|..|||=|+.-|
T Consensus 25 IPslFiaGwlFVstGL 40 (82)
T d2axte1 25 IPALFIAGWLFVSTGL 40 (82)
T ss_dssp HHHHHHHHHHHHHTTH
T ss_pred ccHHHHhhhhheeccc
Confidence 3457889999988543
No 7
>d1d1qa_ c.44.1.1 (A:) Tyrosine phosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.51 E-value=81 Score=20.51 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=14.8
Q ss_pred HHhcCCCCCCChhhH-HHHHHhh
Q psy2165 25 VLIGPFGEDDDDIEL-NWLIDRH 46 (145)
Q Consensus 25 ~llNPFGeDDDDFE~-n~lidrn 46 (145)
.+-+|+|.++++||- -..|++.
T Consensus 128 dI~DP~~~~~~~f~~~~~~I~~~ 150 (159)
T d1d1qa_ 128 IIEDPWYGDIQDFEYNFKQITYF 150 (159)
T ss_dssp SCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHH
Confidence 356999999999973 3344443
No 8
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.30 E-value=2.9e+02 Score=18.43 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=21.0
Q ss_pred chhhHHHHHHHHHHHHHHHH-----HhcCCCCCCChhhHHHHHHhh
Q psy2165 6 PIFTVLQFCFYLGWLKVAEV-----LIGPFGEDDDDIELNWLIDRH 46 (145)
Q Consensus 6 Pv~t~lQF~Fy~GWLKVae~-----llNPFGeDDDDFE~n~lidrn 46 (145)
.+++++|.+++.- ||+.. .--|=-..|++||+..-.-.|
T Consensus 11 t~l~~i~~~~~s~--~V~~~R~k~kv~~p~~~g~~~fera~RaH~N 54 (146)
T d2uuia1 11 TLLGVLLQAYFSL--QVISARRAFRVSPPLTTGPPEFERVYRAQVN 54 (146)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHTTCCSSCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHhcCCCCCCCCCCHHHHHHHHHHhh
Confidence 3556666554422 55532 222434457778877666666
No 9
>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=4.28 E-value=2.8e+02 Score=16.61 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=15.0
Q ss_pred HHHHHHhcCCCCC-CChhhHHHH
Q psy2165 21 KVAEVLIGPFGED-DDDIELNWL 42 (145)
Q Consensus 21 KVae~llNPFGeD-DDDFE~n~l 42 (145)
|+|..++.=+++- ..|||-|--
T Consensus 11 r~a~~lieky~~~ft~DF~~NK~ 33 (62)
T d1rq6a_ 11 RIAKEMIETHPGKFTDDFDTNKK 33 (62)
T ss_dssp HHHHHHHTTSCCCCCCCHHHHHH
T ss_pred HHHHHHHHHchhHhccCHHHHHH
Confidence 5677788665444 678988753
No 10
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.15 E-value=2e+02 Score=19.12 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=18.9
Q ss_pred HHHhcCCCCCCChhhHHHHHHhhHHH
Q psy2165 24 EVLIGPFGEDDDDIELNWLIDRHIKA 49 (145)
Q Consensus 24 e~llNPFGeDDDDFE~n~lidrnl~v 49 (145)
+.++|||-+-+..+. ...+|++++.
T Consensus 108 ~~v~NPfy~~~~pI~-s~~Fd~~v~~ 132 (140)
T d2j3wa1 108 KFAMNPFYEPNSPIR-SSAFDRKVQF 132 (140)
T ss_dssp HHHHSTTCCTTCCCC-CHHHHHHHHH
T ss_pred HHhhCccCCCCCccc-CHHHHHHHHH
Confidence 466799999999986 4567777653
Done!