RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2165
         (145 letters)



>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 215

 Score = 32.2 bits (73), Expect = 0.012
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 43  IDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVPKDL-----PYT-LASECYRRSEPKGSA 96
           ID H+ A   +  ++ +E PE+  D+ +       L     P T     CY    P G  
Sbjct: 111 IDNHLLALRELARDLCKEPPEMFMDETYLMSNRFVLSTSQVPTTMEMFCCYGPVVPNGYG 170

Query: 97  EFYKVKEADSLYANITSRRKS 117
             Y  +  +++   I+S    
Sbjct: 171 ACYNPQP-EAITFCISSFHSC 190


>d1xl7a2 c.43.1.3 (A:393-610) Peroxisomal carnitine
           O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 218

 Score = 30.7 bits (69), Expect = 0.046
 Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 9/83 (10%)

Query: 43  IDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVP--------KDLPYTLASECYRRSEPKG 94
            DRH+    +I  E     PEL +D  +               + Y             G
Sbjct: 111 FDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNG 170

Query: 95  SAEFYKVKEADSLYANITSRRKS 117
              FY +++ D      +S R  
Sbjct: 171 YGFFYHIRD-DRFVVACSSWRSC 192


>d1nm8a2 c.43.1.3 (A:386-599) Carnitine acetyltransferase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 214

 Score = 29.9 bits (67), Expect = 0.071
 Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 7/81 (8%)

Query: 43  IDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVPKDL------PYTLASECYRRSEPKGSA 96
            DRH+    +   E     P++  D  +   +   L        T     +    P G  
Sbjct: 110 FDRHLLGLKLQAIEDLVSTPDIFMDTSYAIAMHFHLSTSQVPAKTDCVMFFGPVVPDGYG 169

Query: 97  EFYKVKEADSLYANITSRRKS 117
             Y   E   +  ++++    
Sbjct: 170 VCYNPME-AHINFSLSAYNSC 189


>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2
           and 4 {Archaeon Methanobacterium thermoautotrophicum
           [TaxId: 145262]}
          Length = 128

 Score = 25.1 bits (55), Expect = 2.6
 Identities = 6/35 (17%), Positives = 16/35 (45%)

Query: 43  IDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVPKD 77
             + I     +  ++ E H  +LK+Q   ++  ++
Sbjct: 77  YGKTIHEGDTLYVDIPENHYHILKEQLSGDLTDEE 111


>d2ikba1 d.2.1.9 (A:1-163) Hypothetical protein NMB1012 {Neisseria
          meningitidis [TaxId: 487]}
          Length = 163

 Score = 24.5 bits (53), Expect = 4.1
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 28 GPFGEDDDDI--ELNWLIDRHIKAAYMIVDEM----HEEHPELLKDQYWDEVVPKDLPYT 81
          G +     D   E NW I +    A      M     E+   + +  +W+      +P  
Sbjct: 17 GGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQMPEA 76

Query: 82 LASECY 87
          +A + +
Sbjct: 77 VAFQFF 82


>d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase,
           C-terminal domain {Azospirillum brasilense [TaxId: 192]}
          Length = 270

 Score = 24.9 bits (54), Expect = 4.5
 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 11/76 (14%)

Query: 7   IFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKA-----AYMIVDEMHEEH 61
            +          ++    V+         + +L  LI+ H+       A  I+++   E 
Sbjct: 190 AYVYDLDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAEILNDWAREV 249

Query: 62  PELLKDQYWDEVVPKD 77
            +  +      VVPK+
Sbjct: 250 TKFWQ------VVPKE 259


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.443 

Gapped
Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 611,984
Number of extensions: 28190
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 15
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)