BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2166
(805 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 93/388 (23%), Positives = 147/388 (37%), Gaps = 69/388 (17%)
Query: 20 LGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEETFAK------------PV 67
L + D L+T A L+ +Q + + G+Y S P T + P
Sbjct: 141 LLKDDANLQTSFIHNVATLQILQ-TDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPF 199
Query: 68 F-IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTL 126
F + P+ + LGE+ +KI W + + + G +K T TL
Sbjct: 200 FDLKPVSVDLALGESGTFKCHVT----GTAPIKITWAKDNREIRPGGNYKMTLVENTATL 255
Query: 127 DLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEES 186
+ +V D G YTC A N+AG+ S +
Sbjct: 256 TVLKVTKGDAGQYTCYASNVAGKDSCSAQL------------------------------ 285
Query: 187 LRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI 246
GV + PP+F + + + + E +E + G + V + + I
Sbjct: 286 ------GVQE-----PPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEI 332
Query: 247 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKF 306
+ S + R + VLE+ +ED+G YTC A N G A S +L+ +PP F
Sbjct: 333 QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV-----KEPPVF 387
Query: 307 TSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDI 366
+E LK D H EC L P +V W + + + + K++S+ + I
Sbjct: 388 RKKPHPVETLKGAD-VHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 444
Query: 367 AYVQSHDSGEYVCRAWNKYGEDFTRATI 394
V S D GEY C+A N G D +I
Sbjct: 445 LNVDSADIGEYQCKASNDVGSDTCVGSI 472
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 137/358 (38%), Gaps = 62/358 (17%)
Query: 66 PVFIVPLK-PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
P FI PL+ E +GE P+ L+ +V+ P ++I W L +K
Sbjct: 6 PYFIEPLEHVEAAIGE--PITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLE 184
+L + +V D G YTC+A N G +S + + ER P K++D+
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLV------IKERKLPPS---FARKLKDVH 112
Query: 185 ESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK 244
E+L G P F G + + V + +G+
Sbjct: 113 ETL------------GFPVAFECRIN--------------------GSEPLQVSWYKDGE 140
Query: 245 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
++ ++T + L+IL T G Y C A+N G A S L + PP
Sbjct: 141 LLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE--VPP 198
Query: 305 KFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM 364
F S++ L G+S F+C +T +K+ W + + I KM +
Sbjct: 199 FFDLKPVSVD-LALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENTATL 255
Query: 365 DIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGV-----YLDSLQPESLARIRE 417
+ V D+G+Y C A N G+D C + GV ++ L+P + + E
Sbjct: 256 TVLKVTKGDAGQYTCYASNVAGKD------SCSAQLGVQEPPRFIKKLEPSRIVKQDE 307
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/354 (20%), Positives = 131/354 (37%), Gaps = 61/354 (17%)
Query: 41 VQEVEHALAGKYQRQPSGPEETFAKPVFIV----PLKPEF--KLGEAQ-----PLHLEAQ 89
+ +V+H+ G+Y + A +V L P F KL + P+ E +
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECR 124
Query: 90 VEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
+ ++P L++ W +G+ L+ + +T+ TL + + G Y C A N G
Sbjct: 125 IN-GSEP-LQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182
Query: 150 TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEF 209
+S + S E VP D +P
Sbjct: 183 ASSSAKLTLSEHE-------------------------------VPPFFDLKPVSV---- 207
Query: 210 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTK 269
+L+ GE F+ + G + + + + + I + L +L
Sbjct: 208 ----DLALGESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVT 261
Query: 270 IEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT 329
D G YTC A+N G+ S L +PP+F ++ +K + +EC +
Sbjct: 262 KGDAGQYTCYASNVAGKDSCSAQL-----GVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 316
Query: 330 PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWN 383
PE+KV W+ + I ++ +M V+++ + DSG+Y C A N
Sbjct: 317 --GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 368
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 125/307 (40%), Gaps = 53/307 (17%)
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVIL 556
+FI ++ +K+ + +E ++ P++ V W+ + ++ ++R + +L
Sbjct: 292 RFIKKLEPSRIVKQDEHTRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 349
Query: 557 DILYCYEENSGVYECRATNKYGSDVTKASLKC---------------VSKTNLILESQLP 601
++ E+SG Y C A N GS + SLK + ++ LE +L
Sbjct: 350 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ 409
Query: 602 -----EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+V W + ++L G +Y+ + + + IL + G Y+C+A+N GSD
Sbjct: 410 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT-- 467
Query: 657 ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASL 716
CV L PP+F + +S + GE +A++
Sbjct: 468 ----CVGSITL---------------------KAPPRFVKKLSDISTVV-GEEVQLQATI 501
Query: 717 IPVGDQTMTVEFLYN-GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775
G + ++V + + G+ + S I ++ + L+ + + G YTC+ N+ G
Sbjct: 502 --EGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGT 559
Query: 776 AEISVNL 782
E L
Sbjct: 560 QECFATL 566
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 114/297 (38%), Gaps = 55/297 (18%)
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILD 557
F ++ DV + G FE R+ ++P L V W+ +G+ L +T + L
Sbjct: 104 FARKLKDVHETL-GFPVAFECRING-SEP-LQVSWYKDGELLKDDANLQTSFIHNVATLQ 160
Query: 558 ILYCYEENSGVYECRATNKYGSDVTKA-------------SLKCVSKTNLILES------ 598
IL + + G Y C A+N G+ + A LK VS + ES
Sbjct: 161 ILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCH 220
Query: 599 ---QLP-EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 654
P ++ W + +++ G Y+ L +L + ++G Y C A+N G D
Sbjct: 221 VTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDS 280
Query: 655 TKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEA 714
A L GV + PP+F + + + + E +E
Sbjct: 281 CSAQL----------------------GVQE-----PPRFIKKLEPSRIVKQDEHTRYEC 313
Query: 715 SLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771
+ G + V + + I+ S + R + VLE+ +ED+G YTC A N
Sbjct: 314 KI--GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 368
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 27/180 (15%)
Query: 603 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 662
+ W+ KL Y+ + L I + G Y C+A N G+ + A L
Sbjct: 37 IAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVL--- 93
Query: 663 SKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ 722
+I E +L PP F + + + +A FE + G +
Sbjct: 94 ----VIKERKL-----------------PPSFARKLKDVHETLGFPVA-FECRI--NGSE 129
Query: 723 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ V + +G+ ++ ++T + L+IL T G Y C A+N G A S L
Sbjct: 130 PLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKL 189
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 125/325 (38%), Gaps = 56/325 (17%)
Query: 63 FAKPVF-IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
A P F + P+ + LGE+ +KI W + + + G +K T
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVT----GTAPIKITWAKDNREIRPGGNYKMTLVE 58
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
TL + +V D G YTC A N+AG+ S +
Sbjct: 59 NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL------------------------- 93
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
GV + PP+F + + + + E +E + G + V +
Sbjct: 94 -----------GVQE-----PPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYK 135
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
+ I+ S + R + VLE+ +ED+G YTC A N G A S +L+
Sbjct: 136 DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV-----K 190
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+PP F +E LK D H EC L P +V W + + + + K++S+
Sbjct: 191 EPPVFRKKPHPVETLKGAD-VHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFL 247
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYG 386
+ I V S D GEY C+A N G
Sbjct: 248 TSIHILNVDSADIGEYQCKASNDVG 272
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVIL 556
+FI ++ +K+ + +E ++ P++ V W+ + ++ ++R + +L
Sbjct: 100 RFIKKLEPSRIVKQDEHTRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 157
Query: 557 DILYCYEENSGVYECRATNKYGSDVTKASLKC---------------VSKTNLILESQLP 601
++ E+SG Y C A N GS + SLK + ++ LE +L
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ 217
Query: 602 -----EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
+V W + ++L G +Y+ + + + IL + G Y+C+A+N GS
Sbjct: 218 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/288 (20%), Positives = 109/288 (37%), Gaps = 53/288 (18%)
Query: 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSG 567
L G+S F+ +T T P + + W + +++ G Y+ L +L + ++G
Sbjct: 17 LALGESGTFKCHVTG-TAP-IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAG 74
Query: 568 VYECRATNKYGSDVTKASL---------KCVSKTNLILESQ----------LPEVE--WF 606
Y C A+N G D A L K + + ++ + + PE++ W+
Sbjct: 75 QYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWY 134
Query: 607 YNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTN 666
+ ++ ++R + +L++ E+SG Y C A N GS + SLK
Sbjct: 135 KDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV----- 189
Query: 667 LILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 726
+ P R++P H +G H E L G V
Sbjct: 190 ----KEPPVFRKKP-------------------HPVETLKGADVHLECEL--QGTPPFQV 224
Query: 727 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
+ + + + + + + + + + IL D G Y C+A+N G
Sbjct: 225 SWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 125/325 (38%), Gaps = 56/325 (17%)
Query: 63 FAKPVF-IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
A P F + P+ + LGE+ +KI W + + + G +K T
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVT----GTAPIKITWAKDNREIRPGGNYKMTLVE 58
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
TL + +V D G YTC A N+AG+ S + G++
Sbjct: 59 NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL-------------------GVQA-- 97
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
PP+F + + + + E +E + G + V +
Sbjct: 98 --------------------PPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYK 135
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
+ I+ S + R + VLE+ +ED+G YTC A N G A S +L+
Sbjct: 136 DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV-----K 190
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+PP F +E LK D H EC L P +V W + + + + K++S+
Sbjct: 191 EPPVFRKKPHPVETLKGAD-VHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFL 247
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYG 386
+ I V S D GEY C+A N G
Sbjct: 248 TSIHILNVDSADIGEYQCKASNDVG 272
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVIL 556
+FI ++ +K+ + +E ++ P++ V W+ + ++ ++R + +L
Sbjct: 100 RFIKKLEPSRIVKQDEHTRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 157
Query: 557 DILYCYEENSGVYECRATNKYGSDVTKASLKC---------------VSKTNLILESQLP 601
++ E+SG Y C A N GS + SLK + ++ LE +L
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ 217
Query: 602 -----EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
+V W + ++L G +Y+ + + + IL + G Y+C+A+N GS
Sbjct: 218 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 107/288 (37%), Gaps = 53/288 (18%)
Query: 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSG 567
L G+S F+ +T T P + + W + +++ G Y+ L +L + ++G
Sbjct: 17 LALGESGTFKCHVTG-TAP-IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAG 74
Query: 568 VYECRATNKYGSDVTKASLKCVSKTNLI----------------LESQL---PEVE--WF 606
Y C A+N G D A L + I E ++ PE++ W+
Sbjct: 75 QYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWY 134
Query: 607 YNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTN 666
+ ++ ++R + +L++ E+SG Y C A N GS + SLK
Sbjct: 135 KDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV----- 189
Query: 667 LILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 726
+ P R++P H +G H E L G V
Sbjct: 190 ----KEPPVFRKKP-------------------HPVETLKGADVHLECEL--QGTPPFQV 224
Query: 727 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
+ + + + + + + + + + IL D G Y C+A+N G
Sbjct: 225 SWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 14/201 (6%)
Query: 203 PQFTSEFQHLSNLSEGEIAHFEA--SLIPVGDQTMTVEFLYNGKPIEASHR--IRTVHAF 258
P FT Q + L EG A FEA S PV + V + +G+ I S ++ +
Sbjct: 6 PTFTQPLQSVVVL-EGSTATFEAHISGFPVPE----VSWFRDGQVISTSTLPGVQISFSD 60
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
G L I ++G Y+ +ATN GQA + E + K++ PP F ++S+ ++
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQA--TSTAELLVKAETAPPNFVQRLQSMT-VRQ 117
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G + +T + P +K ++ +G I ++ + + IA DSG Y
Sbjct: 118 GSQVRLQVRVTGIPTPVVK--FYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYS 175
Query: 379 CRAWNKYGEDFTRATIKCFGK 399
A N G + A + G+
Sbjct: 176 VNATNSVGRATSTAELLVQGE 196
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 33/178 (18%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGK-----KLPHGHRYRTFHDFGIVILDILYCYEE 564
EG +A FEA ++ P+ V WF +G+ LP +F D G L I +
Sbjct: 19 EGSTATFEAHISGFPVPE--VSWFRDGQVISTSTLPGVQI--SFSD-GRAKLTIPAVTKA 73
Query: 565 NSGVYECRATNKYGSDVTKASLKCVSKT---NLILESQ--------------------LP 601
NSG Y +ATN G + A L ++T N + Q P
Sbjct: 74 NSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTP 133
Query: 602 EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
V+++ +G ++ ++ + + L I Y E+SG Y ATN G + A L
Sbjct: 134 VVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 35/188 (18%)
Query: 600 LPEVEWFYNGK-----KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 654
+PEV WF +G+ LP +F D G L I + NSG Y +ATN G
Sbjct: 34 VPEVSWFRDGQVISTSTLPGVQI--SFSD-GRAKLTIPAVTKANSGRYSLKATNGSGQAT 90
Query: 655 TKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEA 714
+ A L ++T PP F Q ++ + +G +
Sbjct: 91 STAELLVKAETA------------------------PPNFVQRLQSMT-VRQGSQVRLQV 125
Query: 715 SLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
+ G T V+F +G I++S + + L I ED+G Y+ ATN G
Sbjct: 126 RV--TGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 775 QAEISVNL 782
+A + L
Sbjct: 184 RATSTAEL 191
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVIL 556
F+ ++ +T +++G + R+T + P VV+++ +G ++ ++ + + L
Sbjct: 105 NFVQRLQSMT-VRQGSQVRLQVRVTGIPTP--VVKFYRDGAEIQSSLDFQISQEGDLYSL 161
Query: 557 DILYCYEENSGVYECRATNKYGSDVTKASL 586
I Y E+SG Y ATN G + A L
Sbjct: 162 LIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 82/234 (35%), Gaps = 46/234 (19%)
Query: 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
T P F PL+ L E EA + P ++ W +G+ + + F
Sbjct: 2 TTQAPTFTQPLQSVVVL-EGSTATFEAHI--SGFPVPEVSWFRDGQVISTSTLPGVQISF 58
Query: 122 --GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
G L + V + G Y+ +A N +G+ ST E L+ K E
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQA-------TSTAELLV------KAETA--- 102
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 239
PP F Q ++ + +G + + G T V+F
Sbjct: 103 ----------------------PPNFVQRLQSMT-VRQGSQVRLQVRV--TGIPTPVVKF 137
Query: 240 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+G I++S + + L I ED+G Y+ ATN G+A + L
Sbjct: 138 YRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 14/194 (7%)
Query: 203 PQFTSEFQHLSNLSEGEIAHFEA--SLIPVGDQTMTVEFLYNGKPIEASHR--IRTVHAF 258
P FT Q + L EG A FEA S PV + V + +G+ I S ++ +
Sbjct: 6 PTFTQPLQSVVVL-EGSTATFEAHISGFPVPE----VSWFRDGQVISTSTLPGVQISFSD 60
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
G L I ++G Y+ +ATN GQA + E + K++ PP F ++S+ ++
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQA--TSTAELLVKAETAPPNFVQRLQSMT-VRQ 117
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G + +T + P +K ++ +G I ++ + + IA DSG Y
Sbjct: 118 GSQVRLQVRVTGIPTPVVK--FYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYS 175
Query: 379 CRAWNKYGEDFTRA 392
A N G + A
Sbjct: 176 VNATNSVGRATSTA 189
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 33/178 (18%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGK-----KLPHGHRYRTFHDFGIVILDILYCYEE 564
EG +A FEA ++ P+ V WF +G+ LP +F D G L I +
Sbjct: 19 EGSTATFEAHISGFPVPE--VSWFRDGQVISTSTLPGVQI--SFSD-GRAKLTIPAVTKA 73
Query: 565 NSGVYECRATNKYGSDVTKASLKCVSKT---NLILESQ--------------------LP 601
NSG Y +ATN G + A L ++T N + Q P
Sbjct: 74 NSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTP 133
Query: 602 EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
V+++ +G ++ ++ + + L I Y E+SG Y ATN G + A L
Sbjct: 134 VVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 35/188 (18%)
Query: 600 LPEVEWFYNGK-----KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 654
+PEV WF +G+ LP +F D G L I + NSG Y +ATN G
Sbjct: 34 VPEVSWFRDGQVISTSTLPGVQI--SFSD-GRAKLTIPAVTKANSGRYSLKATNGSGQAT 90
Query: 655 TKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEA 714
+ A L ++T PP F Q ++ + +G +
Sbjct: 91 STAELLVKAETA------------------------PPNFVQRLQSMT-VRQGSQVRLQV 125
Query: 715 SLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
+ G T V+F +G I++S + + L I ED+G Y+ ATN G
Sbjct: 126 RV--TGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 775 QAEISVNL 782
+A + L
Sbjct: 184 RATSTAEL 191
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVIL 556
F+ ++ +T +++G + R+T + P VV+++ +G ++ ++ + + L
Sbjct: 105 NFVQRLQSMT-VRQGSQVRLQVRVTGIPTP--VVKFYRDGAEIQSSLDFQISQEGDLYSL 161
Query: 557 DILYCYEENSGVYECRATNKYGSDVTKASL 586
I Y E+SG Y ATN G + A L
Sbjct: 162 LIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 82/234 (35%), Gaps = 46/234 (19%)
Query: 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
T P F PL+ L E EA + P ++ W +G+ + + F
Sbjct: 2 TTQAPTFTQPLQSVVVL-EGSTATFEAHI--SGFPVPEVSWFRDGQVISTSTLPGVQISF 58
Query: 122 --GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
G L + V + G Y+ +A N +G+ ST E L+ K E
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQA-------TSTAELLV------KAETA--- 102
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 239
PP F Q ++ + +G + + G T V+F
Sbjct: 103 ----------------------PPNFVQRLQSMT-VRQGSQVRLQVRV--TGIPTPVVKF 137
Query: 240 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+G I++S + + L I ED+G Y+ ATN G+A + L
Sbjct: 138 YRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Query: 241 YNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
Y G PI+ ++ A G VL I K ED G+Y C N AE S L+
Sbjct: 367 YTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL--G 424
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM--- 355
+ PP + E ++ G S +C +P ++ W +GK I + +R ++
Sbjct: 425 GRFDPPVIRQAFQE-ETMEPGPSVFLKCVAG--GNPTPEISWELDGKKIANNDRYQVGQY 481
Query: 356 VSDFGFVV--MDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFG 398
V+ G VV ++I V ++D G Y C A +K G A + +G
Sbjct: 482 VTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG 526
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYE 570
G+ A F + T +P V W +GK + H +L I +E+ G+Y+
Sbjct: 358 GRPAVFTCQYT--GNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQ 405
Query: 571 CRATNKYGSDVTKASLK----------------------------CVSKTNLILESQLPE 602
C N S A LK CV+ N PE
Sbjct: 406 CFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGN-----PTPE 460
Query: 603 VEWFYNGKKLPHGHRYR-----TFHDFGIVILDILYCYEENSGVYECRATNKYG 651
+ W +GKK+ + RY+ T + + L+I + + G+Y+C A +K G
Sbjct: 461 ISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG 514
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 109/290 (37%), Gaps = 60/290 (20%)
Query: 525 DPDLVVEWFYNGKKLPHGHRYR-----TFHDFGIVILDILYCYEENSGVYECRATNKYGS 579
+P + W +GKK+ + RY+ T + + L+I + + G+Y+C A +K G
Sbjct: 456 NPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGV 515
Query: 580 DVTKASLKC--------------VSKTNLILESQLP-----EVEWFYNGKKLPHGHRYRT 620
A L V+ LI+ + + W + + LP + +
Sbjct: 516 AEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKV 575
Query: 621 FHDFGIVILDILYCYEENS--GVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRR 678
F + ++I ++ E NS Y C A N+ G + LE Q+ L
Sbjct: 576 FPNGTLIIENV----ERNSDQATYTCVAKNQEGYSARGS-----------LEVQVMVL-- 618
Query: 679 QPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS 738
P +P + + P Q G+ S +P GD + +++ +G+ I
Sbjct: 619 -PRIIPFAFEEGPAQV------------GQYLTLHCS-VPGGDLPLNIDWTLDGQAISED 664
Query: 739 HRIRT--VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786
I T V G VL I + G +TC A N G + + L V
Sbjct: 665 LGITTSRVGRRGS-VLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV 713
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 22/139 (15%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD--KSKGQPPKFTSHIKSLEGLKDGD 320
L I +ED+G Y C N G + L +K PP T G
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF--------GR 359
Query: 321 SAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCR 380
A F C T +P V W +GK I H V+ I V+ D G Y C
Sbjct: 360 PAVFTCQYT--GNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCF 407
Query: 381 AWNKYGEDFTRATIKCFGK 399
N A +K G+
Sbjct: 408 VRNDRESAEASAELKLGGR 426
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 51/147 (34%), Gaps = 40/147 (27%)
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
E+SG Y C N G + + T L + + L P D GRP FT
Sbjct: 316 EDSGKYLCVVNNSVGGESVE--------TVLTVTAPLSAKIDPPTQTVDF--GRPAVFTC 365
Query: 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG 756
++ G+ TV ++ +GK I S VL I
Sbjct: 366 QY--------------------TGNPIKTVSWMKDGKAIGHSES----------VLRIES 395
Query: 757 TKIEDTGVYTCRATNKWGQAEISVNLE 783
K ED G+Y C N AE S L+
Sbjct: 396 VKKEDKGMYQCFVRNDRESAEASAELK 422
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 271 EDTGVYTCRATNKWGQAEI-SVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT 329
ED GVYTC N G+ + S+ L V PK+ + + +K G C +T
Sbjct: 280 EDEGVYTCEVDNGVGKPQKHSLKLTVVSA-----PKYEQKPEKVIVVKQGQDVTIPCKVT 334
Query: 330 PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDF 389
+ P V W HN KP+ V+D G V I V++ D G Y CRA N++G+ +
Sbjct: 335 GL--PAPNVVWSHNAKPL--SGGRATVTDSGLV---IKGVKNGDKGYYGCRATNEHGDKY 387
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVIL 556
K+ + V +K+GQ ++T + P++V W +N K L G T D G+VI
Sbjct: 310 KYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVV--WSHNAKPLSGGRA--TVTDSGLVIK 365
Query: 557 DILYCYEENSGVYECRATNKYG 578
+ + G Y CRATN++G
Sbjct: 366 GVK---NGDKGYYGCRATNEHG 384
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 96 PNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
P + W N KPL G T D G V + V + D+G Y CRA N G+ + T
Sbjct: 337 PAPNVVWSHNAKPLSGGR--ATVTDSGLV---IKGVKNGDKGYYGCRATNEHGDKYFETL 391
Query: 156 I 156
+
Sbjct: 392 V 392
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 29/111 (26%)
Query: 564 ENSGVYECRATNKYGSDVTKASLKCV-----------SKTNLILESQ------------L 600
E+ GVY C N G K SLK K ++ + Q
Sbjct: 280 EDEGVYTCEVDNGVGKP-QKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPA 338
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
P V W +N K L G T D G+VI + + G Y CRATN++G
Sbjct: 339 PNVVWSHNAKPLSGGRA--TVTDSGLVIKGVK---NGDKGYYGCRATNEHG 384
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 236 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 285
V + +N KP+ TV G+V I G K D G Y CRATN+ G
Sbjct: 340 NVVWSHNAKPLSGGRA--TVTDSGLV---IKGVKNGDKGYYGCRATNEHG 384
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 725 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
V + +N KP+ TV G+V I G K D G Y CRATN+ G
Sbjct: 340 NVVWSHNAKPLSGGRA--TVTDSGLV---IKGVKNGDKGYYGCRATNEHG 384
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 74/188 (39%), Gaps = 34/188 (18%)
Query: 221 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV---------VLEILGTKIE 271
A F A + Q +T+E G P+ RI+ G + L+I E
Sbjct: 210 ARFPAETYALVGQQVTLECFAFGNPVP---RIKWRKVDGSLSPQWTTAEPTLQIPSVSFE 266
Query: 272 DTGVYTCRATNKWG----QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECT 327
D G Y C A N G Q I V + P++ I E G + + C
Sbjct: 267 DEGTYECEAENSKGRDTVQGRIIVQAQ---------PEWLKVISDTEA-DIGSNLRWGCA 316
Query: 328 LTPVNDPELKVEWFHNGKPIFHKNRVKMVS-DFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
P V W NG+P+ +NRV++++ D F + + DSG Y C A NK+G
Sbjct: 317 A--AGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSL-----EDSGMYQCVAENKHG 369
Query: 387 EDFTRATI 394
+ A +
Sbjct: 370 TIYASAEL 377
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 47/117 (40%), Gaps = 26/117 (22%)
Query: 564 ENSGVYECRATNKYGSDVTKAS---------LKCVSKTNLILESQL-----------PEV 603
E+ G YEC A N G D + LK +S T + S L P V
Sbjct: 266 EDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTV 325
Query: 604 EWFYNGKKLPHGHRYRTFH-DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
W NG+ L +R D L + E+SG+Y+C A NK+G+ A L
Sbjct: 326 RWLRNGEPLASQNRVEVLAGDLRFSKLSL-----EDSGMYQCVAENKHGTIYASAEL 377
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 34/146 (23%)
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
E+ G YEC A N G D + +I+++Q PE + + D+E
Sbjct: 266 EDEGTYECEAENSKGRDTVQG--------RIIVQAQ-PEWLKV---ISDTEA-------- 305
Query: 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG 756
SNL G A G TV +L NG+P+ + +R+ + L
Sbjct: 306 --DIGSNLRWGCAA--------AGKPRPTVRWLRNGEPLASQNRVEVLAG----DLRFSK 351
Query: 757 TKIEDTGVYTCRATNKWGQAEISVNL 782
+ED+G+Y C A NK G S L
Sbjct: 352 LSLEDSGMYQCVAENKHGTIYASAEL 377
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 96 PNLKIEWIFNGKPLELGSRFKTTA-DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
P + W+ NG+PL +R + A D F L L D G+Y C A N G + S
Sbjct: 321 PRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSL-----EDSGMYQCVAENKHGTIYASA 375
Query: 155 TI 156
+
Sbjct: 376 EL 377
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 526 PDLVVEWFYNGKKLPHGHRYRTFH-DFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
P V W NG+ L +R D L + E+SG+Y+C A NK+G+ A
Sbjct: 321 PRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSL-----EDSGMYQCVAENKHGTIYASA 375
Query: 585 SL 586
L
Sbjct: 376 EL 377
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 5/114 (4%)
Query: 268 TKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECT 327
TK +D GVY C A+N G V+ E + + G +F+ + +G C
Sbjct: 68 TKAQDAGVYQCLASNPVGTV---VSREAILRF-GFLQEFSKEERDPVKAHEGWGVMLPCN 123
Query: 328 LTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381
P + P L W N P F + + IA + D G Y C A
Sbjct: 124 -PPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLA 176
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 113/314 (35%), Gaps = 62/314 (19%)
Query: 92 PKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151
P + L WIFN P +R + + G L + +V D G YTC N T
Sbjct: 126 PPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTN----TV 179
Query: 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
T+ + LI R GE P+ +F
Sbjct: 180 TNHKVL-GPPTPLILRNDGVMGE--------------------------YEPKIEVQFPE 212
Query: 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKI 270
+G E +G+ T+ + +GKPI R + +LEI +
Sbjct: 213 TVPAEKGTTVKLEC--FALGNPVPTILWRRADGKPIARKARRHKSNG----ILEIPNFQQ 266
Query: 271 EDTGVYTCRATNKWGQAEISVNLECVDKSKGQ-----PPKFTSHIKSLEGLKDGDSAHFE 325
ED G Y C A N G+ + +KGQ P + I + + +S +E
Sbjct: 267 EDAGSYECVAENSRGK----------NVAKGQLTFYAQPNWVQIINDIHVAME-ESVFWE 315
Query: 326 CTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKY 385
C P+ W NG P+ ++R+++ ++I V D+G Y C A NK+
Sbjct: 316 CKAN--GRPKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKH 369
Query: 386 GEDFTRATIKCFGK 399
G F+ A + +
Sbjct: 370 GVIFSSAELSVIAE 383
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 24/130 (18%)
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI---------LESQL----- 600
IL+I +E++G YEC A N G +V K L ++ N + +E +
Sbjct: 258 ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECK 317
Query: 601 ------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 654
P W NG L R + L+I ++G+Y+C A NK+G
Sbjct: 318 ANGRPKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIF 373
Query: 655 TKASLKCVSK 664
+ A L +++
Sbjct: 374 SSAELSVIAE 383
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 69/187 (36%), Gaps = 14/187 (7%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
G P F E H+ + E + S G+ + + NG ++ R G
Sbjct: 2 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 61
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWG---QAEISVNLECVDKSKGQPPKFTSHIKSLEGL 316
+++ K +D G Y C ATN +G E + ++ F + +S +
Sbjct: 62 SLLIN-NPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLE-------NFKTRTRSTVSV 113
Query: 317 KDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGE 376
+ G C P + EL W N P + NR + + G + IA V+ D G
Sbjct: 114 RRGQGMVLLCG-PPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLY--IAKVEKSDVGN 170
Query: 377 YVCRAWN 383
Y C N
Sbjct: 171 YTCVVTN 177
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 79/206 (38%), Gaps = 46/206 (22%)
Query: 582 TKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
T L+C + L + +P + W K P + R GI L+I +E++G
Sbjct: 220 TTVKLECFA-----LGNPVPTILWRRADGK-PIARKARRHKSNGI--LEIPNFQQEDAGS 271
Query: 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHL 701
YEC A N G +V K L ++ N + Q ++ H+
Sbjct: 272 YECVAENSRGKNVAKGQLTFYAQPNWV------------------------QIINDI-HV 306
Query: 702 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIED 761
+ + E +A+ G T +L NG P+ RI+ L I + D
Sbjct: 307 A-MEESVFWECKAN----GRPKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSD 357
Query: 762 TGVYTCRATNKWG----QAEISVNLE 783
G+Y C A NK G AE+SV E
Sbjct: 358 AGMYQCVAENKHGVIFSSAELSVIAE 383
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 124/342 (36%), Gaps = 60/342 (17%)
Query: 66 PVFIV-PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
PVF+ P F L +++ ++ E K +P I W NG +++G F+ + G +
Sbjct: 5 PVFVQEPSHVMFPL-DSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 63
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
++ +D G Y C A N G + + + E+ RT+
Sbjct: 64 LIN-NPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRS------------- 109
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
S+RR V G PP GE+++ +++N
Sbjct: 110 TVSVRRGQGMVLLC--GPPPH------------SGELSY---------------AWIFNE 140
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI----SVNLECVDKS 299
P +R G L I + D G YTC TN ++ + + D
Sbjct: 141 YPSYQDNRRFVSQETGN--LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV 198
Query: 300 KGQ-PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHKNRVKMVS 357
G+ PK + G + EC + +P + W +GKPI K R +
Sbjct: 199 MGEYEPKIEVQFPETVPAEKGTTVKLECFA--LGNPVPTILWRRADGKPIARKARRHKSN 256
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+++I Q D+G Y C A N G++ + + + +
Sbjct: 257 G----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ 294
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 579 SDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 638
S+ K L C K N P + W NG + G +R G ++++ ++
Sbjct: 20 SEEKKVKLSCEVKGN-----PKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPN-KTQD 73
Query: 639 SGVYECRATNKYGSDVTKAS 658
+G Y+C ATN +G+ V++ +
Sbjct: 74 AGTYQCIATNSFGTIVSREA 93
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 113/314 (35%), Gaps = 62/314 (19%)
Query: 92 PKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151
P + L WIFN P +R + + G L + +V D G YTC N T
Sbjct: 127 PPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTN----TV 180
Query: 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
T+ + LI R GE P+ +F
Sbjct: 181 TNHKVL-GPPTPLILRNDGVMGE--------------------------YEPKIEVQFPE 213
Query: 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKI 270
+G E +G+ T+ + +GKPI R + +LEI +
Sbjct: 214 TVPAEKGTTVKLEC--FALGNPVPTILWRRADGKPIARKARRHKSNG----ILEIPNFQQ 267
Query: 271 EDTGVYTCRATNKWGQAEISVNLECVDKSKGQ-----PPKFTSHIKSLEGLKDGDSAHFE 325
ED G Y C A N G+ + +KGQ P + I + + +S +E
Sbjct: 268 EDAGSYECVAENSRGK----------NVAKGQLTFYAQPNWVQIINDIHVAME-ESVFWE 316
Query: 326 CTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKY 385
C P+ W NG P+ ++R+++ ++I V D+G Y C A NK+
Sbjct: 317 CKAN--GRPKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKH 370
Query: 386 GEDFTRATIKCFGK 399
G F+ A + +
Sbjct: 371 GVIFSSAELSVIAE 384
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 24/130 (18%)
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI---------LESQL----- 600
IL+I +E++G YEC A N G +V K L ++ N + +E +
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECK 318
Query: 601 ------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 654
P W NG L R + L+I ++G+Y+C A NK+G
Sbjct: 319 ANGRPKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIF 374
Query: 655 TKASLKCVSK 664
+ A L +++
Sbjct: 375 SSAELSVIAE 384
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 69/187 (36%), Gaps = 14/187 (7%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
G P F E H+ + E + S G+ + + NG ++ R G
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWG---QAEISVNLECVDKSKGQPPKFTSHIKSLEGL 316
+++ K +D G Y C ATN +G E + ++ F + +S +
Sbjct: 63 SLLIN-NPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLE-------NFKTRTRSTVSV 114
Query: 317 KDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGE 376
+ G C P + EL W N P + NR + + G + IA V+ D G
Sbjct: 115 RRGQGMVLLCG-PPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLY--IAKVEKSDVGN 171
Query: 377 YVCRAWN 383
Y C N
Sbjct: 172 YTCVVTN 178
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 79/206 (38%), Gaps = 46/206 (22%)
Query: 582 TKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
T L+C + L + +P + W K P + R GI L+I +E++G
Sbjct: 221 TTVKLECFA-----LGNPVPTILWRRADGK-PIARKARRHKSNGI--LEIPNFQQEDAGS 272
Query: 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHL 701
YEC A N G +V K L ++ N + Q ++ H+
Sbjct: 273 YECVAENSRGKNVAKGQLTFYAQPNWV------------------------QIINDI-HV 307
Query: 702 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIED 761
+ + E +A+ G T +L NG P+ RI+ L I + D
Sbjct: 308 A-MEESVFWECKAN----GRPKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSD 358
Query: 762 TGVYTCRATNKWG----QAEISVNLE 783
G+Y C A NK G AE+SV E
Sbjct: 359 AGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 124/342 (36%), Gaps = 60/342 (17%)
Query: 66 PVFIV-PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
PVF+ P F L +++ ++ E K +P I W NG +++G F+ + G +
Sbjct: 6 PVFVQEPSHVMFPL-DSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
++ +D G Y C A N G + + + E+ RT+
Sbjct: 65 LIN-NPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRS------------- 110
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
S+RR V G PP GE+++ +++N
Sbjct: 111 TVSVRRGQGMVLLC--GPPPH------------SGELSY---------------AWIFNE 141
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI----SVNLECVDKS 299
P +R G L I + D G YTC TN ++ + + D
Sbjct: 142 YPSYQDNRRFVSQETGN--LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV 199
Query: 300 KGQ-PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHKNRVKMVS 357
G+ PK + G + EC + +P + W +GKPI K R +
Sbjct: 200 MGEYEPKIEVQFPETVPAEKGTTVKLECFA--LGNPVPTILWRRADGKPIARKARRHKSN 257
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+++I Q D+G Y C A N G++ + + + +
Sbjct: 258 G----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ 295
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 579 SDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 638
S+ K L C K N P + W NG + G +R G ++++ ++
Sbjct: 21 SEEKKVKLSCEVKGN-----PKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPN-KTQD 74
Query: 639 SGVYECRATNKYGSDVTKAS 658
+G Y+C ATN +G+ V++ +
Sbjct: 75 AGTYQCIATNSFGTIVSREA 94
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 16/133 (12%)
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS---HIKSLEGLKD 318
+L IL + D G+Y C A N G A S C PK T ++K +EGLK
Sbjct: 63 LLTILSVEDSDDGIYCCTANNGVGGAVES----CGALQVKMKPKITRPPINVKIIEGLK- 117
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
A CT + +P+ V W + +R+ ++ + I VQ D+G+Y
Sbjct: 118 ---AVLPCTT--MGNPKPSVSWIKGDSALRENSRIAVLESGS---LRIHNVQKEDAGQYR 169
Query: 379 CRAWNKYGEDFTR 391
C A N G +++
Sbjct: 170 CVAKNSLGTAYSK 182
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 272 DTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD-GDSAHFECTLTP 330
D G+Y C +A ++ + PP + KS + G+ F C +
Sbjct: 164 DEGIYRCEGR---VEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS- 219
Query: 331 VNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFT 390
PE + WF NGK I K + + + + + D G YVCRA NK GED
Sbjct: 220 -GSPEPAISWFRNGKLIEENE--KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK 276
Query: 391 RATIKCF 397
+A ++ F
Sbjct: 277 QAFLQVF 283
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 241 YN--GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNLECVD 297
YN G+ I ++ R+ L I IED G+Y C+AT+ GQ E +V LE
Sbjct: 38 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ 97
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS 357
K + + S + K G+ A C ++ + P V W ++H V +S
Sbjct: 98 KLTFR------EVVSPQEFKQGEDAEVVCRVS--SSPAPAVSW------LYHNEEVTTIS 143
Query: 358 DFGFVVM 364
D F ++
Sbjct: 144 DNRFAML 150
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVY 569
G+ F R + P+ + WF NGK + +Y + + + +I+ + G Y
Sbjct: 209 GEEMTFSCRAS--GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII---NSDGGPY 263
Query: 570 ECRATNKYGSDVTKASLK 587
CRATNK G D +A L+
Sbjct: 264 VCRATNKAGEDEKQAFLQ 281
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 601 PEVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P + WF NGK + +Y + + + +I+ + G Y CRATNK G D +A L
Sbjct: 224 PAISWFRNGKLIEENEKYILKGSNTELTVRNII---NSDGGPYVCRATNKAGEDEKQAFL 280
Query: 660 K 660
+
Sbjct: 281 Q 281
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 96 PNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
P I W NGK +E ++ L + + + D G Y CRA N AGE
Sbjct: 222 PEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGE 273
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 730 YN--GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNLE 783
YN G+ I ++ R+ L I IED G+Y C+AT+ GQ E +V LE
Sbjct: 38 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 94
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 726 VEFLYNGKPIEASHR-IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784
+ + NGK IE + + I + V I+ + D G Y CRATNK G+ E L+
Sbjct: 226 ISWFRNGKLIEENEKYILKGSNTELTVRNIINS---DGGPYVCRATNKAGEDEKQAFLQV 282
Query: 785 VV 786
V
Sbjct: 283 FV 284
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 231 GDQTMTVEFLYNGKPIEASHRI---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 287
G T+ +L NGK + HRI + +A ++++ + D G YTC N++G
Sbjct: 42 GTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVP--SDKGNYTCIVENEYGSI 99
Query: 288 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----N 343
+ L+ V++S + P + + + + + G + F C + +DP+ ++W N
Sbjct: 100 NHTYQLDVVERSPHR-PILQAGLPANKTVALGSNVEFMCKV--YSDPQPHIQWLKHIEVN 156
Query: 344 GKPIFHKN--RVKMVSDFG-------FVVMDIAYVQSHDSGEYVCRAWNKYG 386
G I N V+++ G V+ + V D+GEY C A N G
Sbjct: 157 GSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 601 PEVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 657
P + W NGK+ HR Y+ + +I+D + + G Y C N+YGS
Sbjct: 46 PTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYTCIVENEYGSINHTY 103
Query: 658 SLKCVSKT--NLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEAS 715
L V ++ IL++ LP + G + + ++ H+ L H E +
Sbjct: 104 QLDVVERSPHRPILQAGLPANKTVALG--SNVEFMCKVYSDPQPHIQWLK-----HIEVN 156
Query: 716 LIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775
+G + + + + + M VL + ED G YTC A N G
Sbjct: 157 GSKIGPDNLPYVQILKTAGVNTTDK-------EMEVLHLRNVSFEDAGEYTCLAGNSIGL 209
Query: 776 AEISVNL 782
+ S L
Sbjct: 210 SHHSAWL 216
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 526 PDLVVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 582
P+ + W NGK+ HR Y+ + +I+D + + G Y C N+YGS
Sbjct: 44 PNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYTCIVENEYGSINH 101
Query: 583 KASLKCVSKT--NLILESQLP 601
L V ++ IL++ LP
Sbjct: 102 TYQLDVVERSPHRPILQAGLP 122
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 720 GDQTMTVEFLYNGKPIEASHRI---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
G T+ +L NGK + HRI + +A ++++ + D G YTC N++G
Sbjct: 42 GTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVP--SDKGNYTCIVENEYGSI 99
Query: 777 EISVNLECVVWSPSQTKL 794
+ L+ V SP + L
Sbjct: 100 NHTYQLDVVERSPHRPIL 117
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 272 DTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD-GDSAHFECTLTP 330
D G+Y C +A ++ + PP + KS + G+ F C +
Sbjct: 68 DEGIYRCEGR---VEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS- 123
Query: 331 VNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFT 390
PE + WF NGK I + K + + + + + D G YVCRA NK GED
Sbjct: 124 -GSPEPAISWFRNGKLI--EENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK 180
Query: 391 RATIKCF 397
+A ++ F
Sbjct: 181 QAFLQVF 187
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 509 KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSG 567
+ G+ F R + P+ + WF NGK + +Y + + + +I+ + G
Sbjct: 111 ERGEEMTFSCRAS--GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII---NSDGG 165
Query: 568 VYECRATNKYGSDVTKASLK 587
Y CRATNK G D +A L+
Sbjct: 166 PYVCRATNKAGEDEKQAFLQ 185
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 601 PEVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P + WF NGK + +Y + + + +I+ + G Y CRATNK G D +A L
Sbjct: 128 PAISWFRNGKLIEENEKYILKGSNTELTVRNII---NSDGGPYVCRATNKAGEDEKQAFL 184
Query: 660 K 660
+
Sbjct: 185 Q 185
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 96 PNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
P I W NGK +E ++ L + + + D G Y CRA N AGE
Sbjct: 126 PEPAISWFRNGKLIEENEKYILKG--SNTELTVRNIINSDGGPYVCRATNKAGE 177
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 720 GDQTMTVEFLYNGKPIEASHR-IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
G + + NGK IE + + I + V I+ + D G Y CRATNK G+ E
Sbjct: 124 GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINS---DGGPYVCRATNKAGEDEK 180
Query: 779 SVNLECVV 786
L+ V
Sbjct: 181 QAFLQVFV 188
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 32/200 (16%)
Query: 202 PPQFTSEFQHLSNL--SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA------SHRIR 253
PP+ +H S+L S+GE A G T T+E+ G+ +E SHR+
Sbjct: 9 PPRI---VEHPSDLIVSKGEPATLNCKA--EGRPTPTIEWYKGGERVETDKDDPRSHRM- 62
Query: 254 TVHAFGMVVLEIL-GTKIE-DTGVYTCRATNKWGQA---EISVNLECV-DKSKGQPPKFT 307
+ + + L I+ G K D GVY C A N G+A + S+ + + D + P
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVM 122
Query: 308 SHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIA 367
+ G+ A EC P PE + W +G P+ K+ + ++ G +M I
Sbjct: 123 VAV--------GEPAVMECQ-PPRGHPEPTISWKKDGSPLDDKD--ERITIRGGKLM-IT 170
Query: 368 YVQSHDSGEYVCRAWNKYGE 387
Y + D+G+YVC N GE
Sbjct: 171 YTRKSDAGKYVCVGTNMVGE 190
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 41/202 (20%)
Query: 601 PEVEWFYNGKKL------PHGHRYRTFHDFGIVILDILYCYEE--NSGVYECRATNKYGS 652
P +EW+ G+++ P HR + L I++ + + GVY C A N G
Sbjct: 39 PTIEWYKGGERVETDKDDPRSHRM-LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE 97
Query: 653 DVT-KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 711
V+ ASL+ IL + R+ P+ V ++ GE A
Sbjct: 98 AVSHDASLEVA-----ILRD---DFRQNPSDV-------------------MVAVGEPAV 130
Query: 712 FEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771
E P G T+ + +G P++ T+ ++ I T+ D G Y C TN
Sbjct: 131 MECQP-PRGHPEPTISWKKDGSPLDDKDERITIRGGKLM---ITYTRKSDAGKYVCVGTN 186
Query: 772 KWGQAEISVNLECVVWSPSQTK 793
G+ E V V+ PS K
Sbjct: 187 MVGERESEVAELTVLERPSFVK 208
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 231 GDQTMTVEFLYNGKPIEASHRI---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 287
G T+ +L NGK + HRI + +A ++++ + D G YTC N++G
Sbjct: 43 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVP--SDKGNYTCIVENEYGSI 100
Query: 288 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----N 343
+ L+ V++S + P + + + + + G + F C + +DP+ ++W N
Sbjct: 101 NHTYQLDVVERSPHR-PILQAGLPANKTVALGSNVEFMCKV--YSDPQPHIQWLKHIEVN 157
Query: 344 GKPIFHKN--RVKMVSDFG-------FVVMDIAYVQSHDSGEYVCRAWNKYG 386
G I N V+++ G V+ + V D+GEY C A N G
Sbjct: 158 GSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 209
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 601 PEVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 657
P + W NGK+ HR Y+ + +I+D + + G Y C N+YGS
Sbjct: 47 PTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYTCIVENEYGSINHTY 104
Query: 658 SLKCVSKT--NLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEAS 715
L V ++ IL++ LP + G + + ++ H+ L H E +
Sbjct: 105 QLDVVERSPHRPILQAGLPANKTVALG--SNVEFMCKVYSDPQPHIQWLK-----HIEVN 157
Query: 716 LIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775
+G + + + + + M VL + ED G YTC A N G
Sbjct: 158 GSKIGPDNLPYVQILKTAGVNTTDK-------EMEVLHLRNVSFEDAGEYTCLAGNSIGL 210
Query: 776 AEISVNL 782
+ S L
Sbjct: 211 SHHSAWL 217
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 526 PDLVVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 582
P + W NGK+ HR Y+ + +I+D + + G Y C N+YGS
Sbjct: 45 PQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYTCIVENEYGSINH 102
Query: 583 KASLKCVSKT--NLILESQLP 601
L V ++ IL++ LP
Sbjct: 103 TYQLDVVERSPHRPILQAGLP 123
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 720 GDQTMTVEFLYNGKPIEASHRI---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
G T+ +L NGK + HRI + +A ++++ + D G YTC N++G
Sbjct: 43 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVP--SDKGNYTCIVENEYGSI 100
Query: 777 EISVNLECVVWSPSQTKL 794
+ L+ V SP + L
Sbjct: 101 NHTYQLDVVERSPHRPIL 118
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 231 GDQTMTVEFLYNGKPIEASHRI---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 287
G T+ +L NGK + HRI + +A ++++ + D G YTC N++G
Sbjct: 42 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVP--SDKGNYTCIVENEYGSI 99
Query: 288 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----N 343
+ L+ V++S + P + + + + + G + F C + +DP+ ++W N
Sbjct: 100 NHTYQLDVVERSPHR-PILQAGLPANKTVALGSNVEFMCKV--YSDPQPHIQWLKHIEVN 156
Query: 344 GKPIFHKN--RVKMVSDFG-------FVVMDIAYVQSHDSGEYVCRAWNKYG 386
G I N V+++ G V+ + V D+GEY C A N G
Sbjct: 157 GSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 601 PEVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 657
P + W NGK+ HR Y+ + +I+D + + G Y C N+YGS
Sbjct: 46 PTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYTCIVENEYGSINHTY 103
Query: 658 SLKCVSKT--NLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEAS 715
L V ++ IL++ LP + G + + ++ H+ L H E +
Sbjct: 104 QLDVVERSPHRPILQAGLPANKTVALG--SNVEFMCKVYSDPQPHIQWLK-----HIEVN 156
Query: 716 LIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775
+G + + + + + M VL + ED G YTC A N G
Sbjct: 157 GSKIGPDNLPYVQILKTAGVNTTDK-------EMEVLHLRNVSFEDAGEYTCLAGNSIGL 209
Query: 776 AEISVNL 782
+ S L
Sbjct: 210 SHHSAWL 216
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 526 PDLVVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 582
P + W NGK+ HR Y+ + +I+D + + G Y C N+YGS
Sbjct: 44 PQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYTCIVENEYGSINH 101
Query: 583 KASLKCVSKT--NLILESQLP 601
L V ++ IL++ LP
Sbjct: 102 TYQLDVVERSPHRPILQAGLP 122
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 720 GDQTMTVEFLYNGKPIEASHRI---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
G T+ +L NGK + HRI + +A ++++ + D G YTC N++G
Sbjct: 42 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVP--SDKGNYTCIVENEYGSI 99
Query: 777 EISVNLECVVWSPSQTKL 794
+ L+ V SP + L
Sbjct: 100 NHTYQLDVVERSPHRPIL 117
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 24/221 (10%)
Query: 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI-- 252
+S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 9 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 68
Query: 253 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSH 309
R H + +++ ++ + D G YTC N++G + +L+ V++S+ +P
Sbjct: 69 YKVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGL 124
Query: 310 IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-----------NGKPIFHKNRVKMVSD 358
+ + GD F C + +D + ++W +G P + ++
Sbjct: 125 PANASTVVGGD-VEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINS 181
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
V+ + V D+GEY+C+ N G+ A + K
Sbjct: 182 SNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK 222
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 685 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI-- 741
+S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 9 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 68
Query: 742 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785
R H + +++ ++ + D G YTC N++G + +L+ V
Sbjct: 69 YKVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVV 111
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 23/188 (12%)
Query: 600 LPEVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+P + W NGK+ HR Y+ + +I++ + + G Y C N+YGS
Sbjct: 48 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV--VPSDKGNYTCVVENEYGSINHT 105
Query: 657 ASLKCV--SKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEA 714
L V S+ IL++ LP + G +F + + I H E
Sbjct: 106 YHLDVVERSRHRPILQAGLP-------ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 158
Query: 715 SLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
+ G +G P + +++ VL + D G Y C+ +N G
Sbjct: 159 NGSKYGP---------DGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 209
Query: 775 QAEISVNL 782
QA S L
Sbjct: 210 QANQSAWL 217
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 26/218 (11%)
Query: 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI-- 252
+S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 1 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 60
Query: 253 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSH 309
R H + +++ ++ + D G YTC N++G + +L+ V++S+ + P +
Sbjct: 61 YKVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVVERSRHR-PILQAG 115
Query: 310 IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-----------NGKPIFHKNRVKMV-- 356
+ + G F C + +D + ++W +G P + V
Sbjct: 116 LPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNT 173
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+D V+ I V D+GEY C A N G F A +
Sbjct: 174 TDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 211
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 685 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI-- 741
+S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 1 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 60
Query: 742 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785
R H + +++ ++ + D G YTC N++G + +L+ V
Sbjct: 61 YKVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVV 103
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 600 LPEVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+P + W NGK+ HR Y+ + +I++ + + G Y C N+YGS
Sbjct: 40 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV--VPSDKGNYTCVVENEYGSINHT 97
Query: 657 ASLKCV--SKTNLILESQLP 674
L V S+ IL++ LP
Sbjct: 98 YHLDVVERSRHRPILQAGLP 117
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 90/218 (41%), Gaps = 26/218 (11%)
Query: 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI-- 252
+S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 1 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 60
Query: 253 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSH 309
R H + +++ ++ + D G YTC N++G + +L+ V++S + P +
Sbjct: 61 YKVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVVERSPHR-PILQAG 115
Query: 310 IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-----------NGKPIFHKNRVKMV-- 356
+ + G F C + +D + ++W +G P + V
Sbjct: 116 LPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNT 173
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+D V+ I V D+GEY C A N G F A +
Sbjct: 174 TDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 211
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 685 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI-- 741
+S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 1 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 60
Query: 742 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSL 798
R H + +++ ++ + D G YTC N++G + +L+ V SP + L L
Sbjct: 61 YKVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGL 116
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 600 LPEVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+P + W NGK+ HR Y+ + +I++ + + G Y C N+YGS
Sbjct: 40 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV--VPSDKGNYTCVVENEYGSINHT 97
Query: 657 ASLKCVSKT--NLILESQLP 674
L V ++ IL++ LP
Sbjct: 98 YHLDVVERSPHRPILQAGLP 117
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 236 TVEFLYNGKPI----EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA---E 288
T+E+ +G+P+ + SHR++ + G K +D G Y C A N+ GQA
Sbjct: 40 TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRH 99
Query: 289 ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI- 347
S+ + + PK T K G++A EC P PE + W +G P+
Sbjct: 100 ASLQIAVLRDDFRVEPKDTRVAK-------GETALLECG-PPKGIPEPTLIWIKDGVPLD 151
Query: 348 -------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
+RV++V D G ++ I+ V+ D G Y C A N G
Sbjct: 152 DLKAMSFGASSRVRIV-DGGNLL--ISNVEPIDEGNYKCIAQNLVG 194
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIF----HKNRVKMVS 357
Q P+ H L +K + A C + PE +EWF +G+P+ +RV+
Sbjct: 8 QSPRIIEHPTDLV-VKKNEPATLNCKVE--GKPEPTIEWFKDGEPVSTNEKKSHRVQFKD 64
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTR 391
F + + D GEY C A N+ G+ +R
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSR 98
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 725 TVEFLYNGKPI----EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
T+E+ +G+P+ + SHR++ + G K +D G Y C A N+ GQA
Sbjct: 40 TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 236 TVEFLYNGKPI----EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA---E 288
T+E+ +G+P+ + SHR++ + G K +D G Y C A N+ GQA
Sbjct: 40 TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRH 99
Query: 289 ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI- 347
S+ + + PK T K G++A EC P PE + W +G P+
Sbjct: 100 ASLQIAVLRDDFRVEPKDTRVAK-------GETALLECG-PPKGIPEPTLIWIKDGVPLD 151
Query: 348 -------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
+RV++V D G ++ I+ V+ D G Y C A N G
Sbjct: 152 DLKAMSFGASSRVRIV-DGGNLL--ISNVEPIDEGNYKCIAQNLVG 194
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIF----HKNRVKMVS 357
Q P+ H L +K + A C + PE +EWF +G+P+ +RV+
Sbjct: 8 QSPRIIEHPTDLV-VKKNEPATLNCKVE--GKPEPTIEWFKDGEPVSTNEKKSHRVQFKD 64
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTR 391
F + + D GEY C A N+ G+ +R
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSR 98
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 725 TVEFLYNGKPI----EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
T+E+ +G+P+ + SHR++ + G K +D G Y C A N+ GQA
Sbjct: 40 TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 20/172 (11%)
Query: 230 VGDQTMTVEFLYNGKPIEASHRIRTV---HAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 286
G+ T ++ +L NG+ HRI + H +V+E + D G YTC NK+G
Sbjct: 40 AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS--DRGNYTCVVENKFGS 97
Query: 287 AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH---- 342
+ L+ +++S + P + + + + G F C + +D + ++W
Sbjct: 98 IRQTYTLDVLERSPHR-PILQAGLPANQTAVLGSDVEFHCKV--YSDAQPHIQWLKHVEV 154
Query: 343 NGKPIFHKNR--VKMVSDF------GFVVMDIAYVQSHDSGEYVCRAWNKYG 386
NG + V ++ + V + +A V D GEY+CRA N G
Sbjct: 155 NGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIG 206
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 24/183 (13%)
Query: 601 PEVEWFYNGKKLPHGHRYRTF----HDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
P + W NG++ HR + +V+ ++ + G Y C NK+GS
Sbjct: 45 PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVV---PSDRGNYTCVVENKFGSIRQT 101
Query: 657 ASLKCVSKT--NLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEA 714
+L + ++ IL++ LP Q A + + ++ H+ L E+ +
Sbjct: 102 YTLDVLERSPHRPILQAGLPA--NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNG--S 157
Query: 715 SLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
+ P G +TV + + +EA R+R + D G Y CRATN G
Sbjct: 158 KVGPDGTPYVTVLKSWISESVEADVRLR-----------LANVSERDGGEYLCRATNFIG 206
Query: 775 QAE 777
AE
Sbjct: 207 VAE 209
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 719 VGDQTMTVEFLYNGKPIEASHRIRTV---HAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775
G+ T ++ +L NG+ HRI + H +V+E + D G YTC NK+G
Sbjct: 40 AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS--DRGNYTCVVENKFGS 97
Query: 776 AEISVNLECVVWSPSQTKLVYSL 798
+ L+ + SP + L L
Sbjct: 98 IRQTYTLDVLERSPHRPILQAGL 120
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 26/217 (11%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI--- 252
S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 1 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY 60
Query: 253 --RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHI 310
R H + +++ ++ + D G YTC N++G + +L+ V++S + P + +
Sbjct: 61 KVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVVERSPHR-PILQAGL 115
Query: 311 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-----------NGKPIFHKNRVKMV--S 357
+ G F C + +D + ++W +G P + V +
Sbjct: 116 PANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTT 173
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
D V+ I V D+GEY C A N G F A +
Sbjct: 174 DKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 210
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI--- 741
S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 1 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY 60
Query: 742 --RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSL 798
R H + +++ ++ + D G YTC N++G + +L+ V SP + L L
Sbjct: 61 KVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGL 115
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 600 LPEVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+P + W NGK+ HR Y+ + +I++ + + G Y C N+YGS
Sbjct: 39 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV--VPSDKGNYTCVVENEYGSINHT 96
Query: 657 ASLKCVSKT--NLILESQLP 674
L V ++ IL++ LP
Sbjct: 97 YHLDVVERSPHRPILQAGLP 116
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 26/215 (12%)
Query: 199 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI----- 252
+ R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 2 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV 61
Query: 253 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKS 312
R H + +++ ++ + D G YTC N++G + +L+ V++S+ + P + + +
Sbjct: 62 RNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVVERSRHR-PILQAGLPA 116
Query: 313 LEGLKDGDSAHFECTLTPVNDPELKVEWFH-----------NGKPIFHKNRVKMV--SDF 359
G F C + +D + ++W +G P + V +D
Sbjct: 117 NASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 174
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
V+ I V D+GEY C A N G F A +
Sbjct: 175 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 209
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 600 LPEVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+P + W NGK+ HR Y+ + +I++ + + G Y C N+YGS
Sbjct: 38 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV--VPSDKGNYTCVVENEYGSINHT 95
Query: 657 ASLKCV--SKTNLILESQLP 674
L V S+ IL++ LP
Sbjct: 96 YHLDVVERSRHRPILQAGLP 115
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 688 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI----- 741
+ R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 2 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV 61
Query: 742 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785
R H + +++ ++ + D G YTC N++G + +L+ V
Sbjct: 62 RNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVV 101
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 21/172 (12%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTV---HAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 287
G+ T ++ +L NG+ HRI + H +V+E D G YTC NK+G
Sbjct: 149 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVME--SVVPSDRGNYTCVVENKFGSI 206
Query: 288 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----N 343
+ L+ +++S + P + + + + G F C + +D + ++W N
Sbjct: 207 RQTYTLDVLERSPHR-PILQAGLPANQTAVLGSDVEFHCKV--YSDAQPHIQWLKHVEVN 263
Query: 344 GKPI---------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
G + K +D V+ + V D+GEY C A N G
Sbjct: 264 GSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIG 315
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 720 GDQTMTVEFLYNGKPIEASHRIRTV---HAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
G+ T ++ +L NG+ HRI + H +V+E D G YTC NK+G
Sbjct: 149 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVME--SVVPSDRGNYTCVVENKFGSI 206
Query: 777 EISVNLECVVWSPSQTKLVYSL 798
+ L+ + SP + L L
Sbjct: 207 RQTYTLDVLERSPHRPILQAGL 228
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 66/181 (36%), Gaps = 25/181 (13%)
Query: 601 PEVEWFYNGKKLPHGHRYRTF----HDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
P + W NG++ HR + +V+ ++ + G Y C NK+GS
Sbjct: 153 PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVV---PSDRGNYTCVVENKFGSIRQT 209
Query: 657 ASLKCVSKT--NLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEA 714
+L + ++ IL++ LP Q A + + ++ H+ L H E
Sbjct: 210 YTLDVLERSPHRPILQAGLPA--NQTAVLGSDVEFHCKVYSDAQPHIQWLK-----HVEV 262
Query: 715 SLIPVG-DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 773
+ VG D T V L + VL + ED G YTC A N
Sbjct: 263 NGSKVGPDGTPYVTVLKTAGANTTDKELE--------VLSLHNVTFEDAGEYTCLAGNSI 314
Query: 774 G 774
G
Sbjct: 315 G 315
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G+ F C + PE + WF NGK I + K + + + + + D G YV
Sbjct: 19 GEEMTFSCRAS--GSPEPAISWFRNGKLI--EENEKYILKGSNTELTVRNIINSDGGPYV 74
Query: 379 CRAWNKYGEDFTRATIKCF 397
CRA NK GED +A ++ F
Sbjct: 75 CRATNKAGEDEKQAFLQVF 93
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 30/185 (16%)
Query: 601 PEVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P + WF NGK + +Y + + + +I+ + G Y CRATNK G D +A L
Sbjct: 34 PAISWFRNGKLIEENEKYILKGSNTELTVRNII---NSDGGPYVCRATNKAGEDEKQAFL 90
Query: 660 KCVSKTNLI-LESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 718
+ + ++I L+++ Q V D+E P+ T + +
Sbjct: 91 QVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWK------------RAVDGFTFT 138
Query: 719 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
GD+++ RI G L I K+ D+G Y C A ++ G +
Sbjct: 139 EGDKSL-------------DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQK 185
Query: 779 SVNLE 783
S+ L+
Sbjct: 186 SMYLD 190
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 34/169 (20%)
Query: 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVY 569
G+ F R + P+ + WF NGK + +Y + + + +I+ + G Y
Sbjct: 19 GEEMTFSCRAS--GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII---NSDGGPY 73
Query: 570 ECRATNKYGSDVTKASLKCVSKTNLI-LESQ------------------LPEVEW----- 605
CRATNK G D +A L+ + ++I L+++ +PE+ W
Sbjct: 74 VCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVD 133
Query: 606 ---FYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
F G K G R G L I +SG Y+C A ++ G
Sbjct: 134 GFTFTEGDKSLDG-RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 22/160 (13%)
Query: 236 TVEFLYNGKPIEASHR-IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ + NGK IE + + I + V I+ + D G Y CRATNK G+ E L+
Sbjct: 35 AISWFRNGKLIEENEKYILKGSNTELTVRNIINS---DGGPYVCRATNKAGEDEKQAFLQ 91
Query: 295 CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEW--------FHNGKP 346
QP HI L+ ++ +P ++ W F G
Sbjct: 92 VFV----QP-----HIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDK 142
Query: 347 IFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
R+++ G + I V+ DSG Y C A ++ G
Sbjct: 143 SLD-GRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 96 PNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
P I W NGK +E ++ L + + + D G Y CRA N AGE
Sbjct: 32 PEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGE 83
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 725 TVEFLYNGKPIEASHR-IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ + NGK IE + + I + V I+ + D G Y CRATNK G+ E L+
Sbjct: 35 AISWFRNGKLIEENEKYILKGSNTELTVRNIINS---DGGPYVCRATNKAGEDEKQAFLQ 91
Query: 784 CVV 786
V
Sbjct: 92 VFV 94
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 26/218 (11%)
Query: 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI-- 252
+S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 1 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 60
Query: 253 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSH 309
R H + +++ ++ + D G YTC N++G + +L+ V++ +P +
Sbjct: 61 YKVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVVERWPHRP-ILQAG 115
Query: 310 IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-----------NGKPIFHKNRVKMV-- 356
+ + G F C + +D + ++W +G P + V
Sbjct: 116 LPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNT 173
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+D V+ I V D+GEY C A N G F A +
Sbjct: 174 TDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 211
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 685 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI-- 741
+S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 1 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 60
Query: 742 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785
R H + +++ ++ + D G YTC N++G + +L+ V
Sbjct: 61 YKVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVV 103
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 600 LPEVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+P + W NGK+ HR Y+ + +I++ + + G Y C N+YGS
Sbjct: 40 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV--VPSDKGNYTCVVENEYGSINHT 97
Query: 657 ASLKCVSKT--NLILESQLP 674
L V + IL++ LP
Sbjct: 98 YHLDVVERWPHRPILQAGLP 117
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 24/188 (12%)
Query: 229 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 282
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 42 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 97
Query: 283 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH 342
++G + +L+ V++S + P + + + G F C + +D + ++W
Sbjct: 98 EYGSINHTYHLDVVERSPHR-PILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIK 154
Query: 343 -----------NGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTR 391
+G P + ++ V+ + V D+GEY+C+ N G+
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214
Query: 392 ATIKCFGK 399
A + K
Sbjct: 215 AWLTVLPK 222
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 718 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 771
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 42 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 97
Query: 772 KWGQAEISVNLECVVWSPSQTKLVYSL 798
++G + +L+ V SP + L L
Sbjct: 98 EYGSINHTYHLDVVERSPHRPILQAGL 124
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 25/189 (13%)
Query: 600 LPEVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+P + W NGK+ HR Y+ + +I++ + + G Y C N+YGS
Sbjct: 48 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV--VPSDKGNYTCVVENEYGSINHT 105
Query: 657 ASLKCVSKTNLILESQLPELRRQPAGVPDSED---GRPPQFTSEFQHLSNLSEGEIAHFE 713
L V ++ P L+ AG+P + G +F + + I H E
Sbjct: 106 YHLDVVERS-----PHRPILQ---AGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 157
Query: 714 ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 773
+ G +G P + +++ VL + D G Y C+ +N
Sbjct: 158 KNGSKYGP---------DGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYI 208
Query: 774 GQAEISVNL 782
GQA S L
Sbjct: 209 GQANQSAWL 217
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 262 VLEILGTKIE-DTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS--HIKSLEGLKD 318
VL I +++ D +Y C ATN G+ S L +++ + PP F S L+ ++
Sbjct: 64 VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQ-LPPGFPSIDMGPQLKVVEK 122
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
+A C DPE + WF + P+ + + I + D G+Y
Sbjct: 123 ARTATMLCAAGGNPDPE--ISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYE 180
Query: 379 CRAWNKYGEDFT 390
C A N G ++
Sbjct: 181 CVATNSAGTRYS 192
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 64/185 (34%), Gaps = 34/185 (18%)
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--FHDFGIVI 555
FI D T L G A F + T +P + W GKK+ R+ F D +
Sbjct: 9 FIKVPEDQTGLS-GGVASFVCQAT--GEPKPRITWMKKGKKV-SSQRFEVIEFDDGAGSV 64
Query: 556 LDILYC-YEENSGVYECRATNKYGSDVTKASLKCVSKTNLI-------LESQL------- 600
L I + + +YEC ATN G T A L + + L + QL
Sbjct: 65 LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKAR 124
Query: 601 -------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
PE+ WF + + L I E + G YEC AT
Sbjct: 125 TATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVAT 184
Query: 648 NKYGS 652
N G+
Sbjct: 185 NSAGT 189
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 39/183 (21%)
Query: 601 PEVEWFYNGKKLPHGHRYRT--FHDFGIVILDILYC-YEENSGVYECRATNKYGSDVTKA 657
P + W GKK+ R+ F D +L I + + +YEC ATN G T A
Sbjct: 36 PRITWMKKGKKV-SSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSA 94
Query: 658 SLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG------EIAH 711
L +++ E QL P G P + G + + + + L EI+
Sbjct: 95 KL------SVLEEEQL------PPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISW 142
Query: 712 FEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771
F+ +PV P ++ RI+ + + L+I ++ D G Y C ATN
Sbjct: 143 FK-DFLPV-------------DPATSNGRIKQLRSG---ALQIESSEESDQGKYECVATN 185
Query: 772 KWG 774
G
Sbjct: 186 SAG 188
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 89/226 (39%), Gaps = 46/226 (20%)
Query: 64 AKPVFI-VPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA--D 120
+KPVFI VP G +A EPK +I W+ GK + RF+ D
Sbjct: 5 SKPVFIKVPEDQTGLSGGVASFVCQATGEPKP----RITWMKKGKKVS-SQRFEVIEFDD 59
Query: 121 FGFVTLDLTEV-YDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
L + + RD+ IY C A N GE I S K S++E Q P G ++
Sbjct: 60 GAGSVLRIQPLRVQRDEAIYECTATNSLGE------INTSAKLSVLEEEQLPPGFPSIDM 113
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 239
L+ + + A + + G P + EI+ F+ +PV
Sbjct: 114 GPQLKVVEKARTATMLCAAGGNP--------------DPEISWFK-DFLPV--------- 149
Query: 240 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 285
P ++ RI+ + + L+I ++ D G Y C ATN G
Sbjct: 150 ----DPATSNGRIKQLRSG---ALQIESSEESDQGKYECVATNSAG 188
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%)
Query: 570 ECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVIL 629
E K DVT + + I+ LP+++W+ GK+L +Y+ D L
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 630 DILYCYEENSGVYECRATNKYGSDVTKASL 659
++ +E+ GVY C ATN+ G T + L
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKL 95
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 501 QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILY 560
++ DVT K G++A ++ PD ++W+ GK+L +Y+ D L ++
Sbjct: 13 EMKDVTT-KLGEAAQLSCQIVGRPLPD--IKWYRFGKELIQSRKYKMSSDGRTHTLTVMT 69
Query: 561 CYEENSGVYECRATNKYGSDVTKASL 586
+E+ GVY C ATN+ G T + L
Sbjct: 70 EEQEDEGVYTCIATNEVGEVETSSKL 95
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQ 136
KLGEA L + P D I+W GK L ++K ++D TL + D+
Sbjct: 20 KLGEAAQLSCQIVGRPLPD----IKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDE 75
Query: 137 GIYTCRAWNLAGETFTSTTI 156
G+YTC A N GE TS+ +
Sbjct: 76 GVYTCIATNEVGEVETSSKL 95
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360
G+ P +K + K G++A C + V P ++W+ GK + + KM SD
Sbjct: 5 GEAPGIRKEMKDVT-TKLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSSDGR 61
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGE 387
+ + + D G Y C A N+ GE
Sbjct: 62 THTLTVMTEEQEDEGVYTCIATNEVGE 88
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 11/189 (5%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
G P E + ++ GE A + VG +++ GK + S + +
Sbjct: 5 GEAPGIRKEMKDVTT-KLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSSDGR 61
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
L ++ + ED GVYTC ATN+ G+ E S L P+F E
Sbjct: 62 THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL-----QATPQFHPGYPLKEKYYGA 116
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM--VSDFGFVVMDIAYVQSHDSGEY 377
+ + + P + WFH K + + + + + +VM ++H +G+Y
Sbjct: 117 VGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTH-AGKY 175
Query: 378 VCRAWNKYG 386
+ N +G
Sbjct: 176 KVQLSNVFG 184
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
G P E + ++ GE A + VG +++ GK + S + +
Sbjct: 5 GEAPGIRKEMKDVTT-KLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSSDGR 61
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
L ++ + ED GVYTC ATN+ G+ E S L
Sbjct: 62 THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 96 PNLKIEWIFNGKPLELGSRFKTTA-DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
P + W +GKP+ S K + G +L + V RD GIYTC A N AG+ S
Sbjct: 37 PTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSL 96
Query: 155 TIYCSTKES 163
+ + KES
Sbjct: 97 ELVVAAKES 105
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 215 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRTVHAFGMVVLEILGTKIED 272
+ EG++ + + G T + + +GKP+ +++H++ V G+ L I D
Sbjct: 21 VQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDSAHKM-LVRENGVHSLIIEPVTSRD 77
Query: 273 TGVYTCRATNKWGQAEISVNLECVDKSKG 301
G+YTC ATN+ GQ S+ L K G
Sbjct: 78 AGIYTCIATNRAGQNSFSLELVVAAKESG 106
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 316 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM-VSDFGFVVMDIAYVQSHDS 374
+++G +C ++ + P+L W +GKP+ + KM V + G + I V S D+
Sbjct: 21 VQEGKLCRMDCKVSGLPTPDL--SWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDA 78
Query: 375 GEYVCRAWNKYGED 388
G Y C A N+ G++
Sbjct: 79 GIYTCIATNRAGQN 92
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRTVHAFGMVVLEILGTKIED 761
+ EG++ + + G T + + +GKP+ +++H++ V G+ L I D
Sbjct: 21 VQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDSAHKM-LVRENGVHSLIIEPVTSRD 77
Query: 762 TGVYTCRATNKWGQAEISVNL 782
G+YTC ATN+ GQ S+ L
Sbjct: 78 AGIYTCIATNRAGQNSFSLEL 98
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYRTFHDFGIVIL 556
F+ D+T ++EG+ + +++ + PDL W +GK + P + G+ L
Sbjct: 12 FLQAPGDLT-VQEGKLCRMDCKVSGLPTPDL--SWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 557 DILYCYEENSGVYECRATNKYGSD 580
I ++G+Y C ATN+ G +
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQN 92
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 588 CVSKTNLILESQ---LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644
C T IL Q EV+W++NG +L + + G++ L+IL C+ ++SG Y
Sbjct: 22 CGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRA 81
Query: 645 RATNKYGSDVTKASL 659
TN G A+L
Sbjct: 82 VCTNYKGEASDYATL 96
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYE 570
GQ+ F L + P V+W++NG +L + + G++ L+IL C+ ++SG Y
Sbjct: 23 GQNTRF--ILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYR 80
Query: 571 CRATNKYGSDVTKASL 586
TN G A+L
Sbjct: 81 AVCTNYKGEASDYATL 96
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 334 PELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
P +V+W+HNG + +++ + G + ++I + DSG Y N GE AT
Sbjct: 36 PTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYAT 95
Query: 394 IKCFG 398
+ G
Sbjct: 96 LDVTG 100
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 234 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
T V++ +NG ++ S +I + G++ LEIL +D+G Y TN G+A L
Sbjct: 37 TAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96
Query: 294 E 294
+
Sbjct: 97 D 97
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 723 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
T V++ +NG ++ S +I + G++ LEIL +D+G Y TN G+A L
Sbjct: 37 TAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96
Query: 783 E 783
+
Sbjct: 97 D 97
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 93 KNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
++ P +++W NG L+ S+ T G +TL++ + + D G Y N GE
Sbjct: 33 QSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGE 89
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD-FGFV 362
P FT I +E + +G +A F+C + DPE V WF + P+ ++ D G
Sbjct: 42 PYFTKTILDME-VVEGSAARFDCKVEGYPDPE--VMWFKDDNPVKESRHFQIDYDEEGNC 98
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGE 387
+ I+ V D +Y C+A N GE
Sbjct: 99 SLTISEVCGDDDAKYTCKAVNSLGE 123
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
E+ KP F + + ++ E + +VE DP ++ W + P++ F+
Sbjct: 36 EKPHVKPYFTKTIL-DMEVVEGSAARFDCKVEGYPDP--EVMWFKDDNPVKESRHFQIDY 92
Query: 120 DF-GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCST 160
D G +L ++EV D YTC+A N GE + + T
Sbjct: 93 DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 120/317 (37%), Gaps = 63/317 (19%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTA---DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151
DP ++ W GK + RF+T G V RD+ +Y C A N GE
Sbjct: 33 DPKPRVTWNKKGKKVN-SQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGE-- 89
Query: 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
I K +++ Q P G ++ L+ R + A + + G P
Sbjct: 90 ----ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP--------- 136
Query: 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 271
+ EI F+ +PV P ++ RI+ + + L+I ++
Sbjct: 137 -----DPEITWFK-DFLPV-------------DPSASNGRIKQLRSGA---LQIESSEET 174
Query: 272 DTGVYTCRATNKWG-----QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFEC 326
D G Y C ATN G A + V ++ V P+F+ S E + G +
Sbjct: 175 DQGKYECVATNSAGVRYSSPANLYVRVQNVA------PRFSILPMSHEIMPGG---NVNI 225
Query: 327 TLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
T V P V+W + + ++ + + G V+++ V+ DS Y C A + G
Sbjct: 226 TCVAVGSPMPYVKWMQGAEDLTPEDDMPV----GRNVLELTDVK--DSANYTCVAMSSLG 279
Query: 387 --EDFTRATIKCFGKGG 401
E + T+K K G
Sbjct: 280 VIEAVAQITVKSLPKAG 296
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 64/185 (34%), Gaps = 34/185 (18%)
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--FHDFGIV 554
+FI + D + G A F + T DP V W GKK+ + R+ T F +
Sbjct: 8 RFIKEPKDQIGVS-GGVASFVCQAT--GDPKPRVTWNKKGKKV-NSQRFETIEFDESAGA 63
Query: 555 ILDILYCYE-ENSGVYECRATNKYGSDVTKASLKCVSK-------TNLILESQL------ 600
+L I + VYEC A N G A L + + N+ + QL
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 601 --------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRA 646
PE+ WF + + L I E + G YEC A
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Query: 647 TNKYG 651
TN G
Sbjct: 184 TNSAG 188
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 68/177 (38%), Gaps = 27/177 (15%)
Query: 601 PEVEWFYNGKKLPHGHRYRT--FHDFGIVILDILYCYE-ENSGVYECRATNKYGSDVTKA 657
P V W GKK+ + R+ T F + +L I + VYEC A N G A
Sbjct: 36 PRVTWNKKGKKV-NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHA 94
Query: 658 SLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLI 717
L ++ E QLP +G P+ + G PQ + + AS
Sbjct: 95 KL------TVLREDQLP------SGFPNIDMG--PQL-----KVVERTRTATMLCAASGN 135
Query: 718 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
P + T +FL P++ S + L+I ++ D G Y C ATN G
Sbjct: 136 PDPEITWFKDFL----PVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 24/221 (10%)
Query: 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG-DQTMTVEFLYNGKPIEASHRI-- 252
+S + R P +T+ + L A+ P G + T +L NGK + HRI
Sbjct: 8 NSNNKRAPYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGG 67
Query: 253 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSH 309
R H + ++ ++ + D G YTC N++G + +L+ V++S + P +
Sbjct: 68 YKVRNQH-WSLIXESVVPS---DKGNYTCVVENEYGSINHTYHLDVVERSPHR-PILQAG 122
Query: 310 IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-----------NGKPIFHKNRVKMVSD 358
+ + G F C + +D + ++W +G P + ++
Sbjct: 123 LPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINS 180
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
V+ + V D+GEY+C+ N G+ A + K
Sbjct: 181 SNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK 221
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 685 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG-DQTMTVEFLYNGKPIEASHRI-- 741
+S + R P +T+ + L A+ P G + T +L NGK + HRI
Sbjct: 8 NSNNKRAPYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGG 67
Query: 742 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSL 798
R H + ++ ++ + D G YTC N++G + +L+ V SP + L L
Sbjct: 68 YKVRNQH-WSLIXESVVPS---DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGL 123
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Query: 251 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHI 310
RI G L I K+ D+G Y C A ++ G + S+ L+ PKF S+
Sbjct: 53 RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI-----EYAPKFISN- 106
Query: 311 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKMVSDFGFVVMDIAY 368
+++ +G+ + C + ++P + W + + KN +K S ++++IA
Sbjct: 107 QTIYYSWEGNPINISCDVK--SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAP 164
Query: 369 VQSHDSGEYVCRAWNKYGEDF 389
+D G Y C A N G F
Sbjct: 165 TSDNDFGRYNCTATNHIGTRF 185
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 14/125 (11%)
Query: 80 EAQPLHLEAQVEPKNDPNLKIEWIFNGK--PLELGSRFKTTADFGFVTLDLTEVYDRDQG 137
E P+++ V K++P I W + P + + KT + + L++ D D G
Sbjct: 114 EGNPINISCDV--KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFG 171
Query: 138 IYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDS 197
Y C A N G F +E ++ P G+ KI +L ++ + PDS
Sbjct: 172 RYNCTATNHIGTRF---------QEYILALADVPSSPYGV-KIIELSQTTAKVSFNKPDS 221
Query: 198 EDGRP 202
G P
Sbjct: 222 HGGVP 226
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 25/182 (13%)
Query: 231 GDQTMTVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 285
G+ T +L NGK + HRI R H + ++ ++ + D G YTC N++G
Sbjct: 37 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQH-WSLIXESVVPS---DKGNYTCVVENEYG 92
Query: 286 QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH--- 342
+ +L+ V++S + P + + + G F C + +D + ++W
Sbjct: 93 SINHTYHLDVVERSPHR-PILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVE 149
Query: 343 --------NGKPIFHKNRVKMV--SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRA 392
+G P + V +D V+ I V D+GEY C A N G F A
Sbjct: 150 KNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 209
Query: 393 TI 394
+
Sbjct: 210 WL 211
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 720 GDQTMTVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
G+ T +L NGK + HRI R H + ++ ++ + D G YTC N++G
Sbjct: 37 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQH-WSLIXESVVPS---DKGNYTCVVENEYG 92
Query: 775 QAEISVNLECVVWSPSQTKLVYSL 798
+ +L+ V SP + L L
Sbjct: 93 SINHTYHLDVVERSPHRPILQAGL 116
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Query: 251 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHI 310
RI G L I K+ D+G Y C A ++ G + S+ L+ PKF S+
Sbjct: 53 RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI-----EYAPKFISN- 106
Query: 311 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKMVSDFGFVVMDIAY 368
+++ +G+ + C + ++P + W + + KN +K S ++++IA
Sbjct: 107 QTIYYSWEGNPINISCDVK--SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAP 164
Query: 369 VQSHDSGEYVCRAWNKYGEDF 389
+D G Y C A N G F
Sbjct: 165 TSDNDFGRYNCTATNHIGTRF 185
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 23/189 (12%)
Query: 24 DIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEETFAKPVFI-VPLKPEFKLG--- 79
D +E + G++ L +++V+ + +G+Y + + K +++ + P+F
Sbjct: 51 DGRIEVKGQHGSSSLH-IKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTI 109
Query: 80 ----EAQPLHLEAQVEPKNDPNLKIEWIFNGK--PLELGSRFKTTADFGFVTLDLTEVYD 133
E P+++ V K++P I W + P + + KT + + L++ D
Sbjct: 110 YYSWEGNPINISCDV--KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSD 167
Query: 134 RDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAG 193
D G Y C A N G F +E ++ P G+ KI +L ++ +
Sbjct: 168 NDFGRYNCTATNHIGTRF---------QEYILALADVPSSPYGV-KIIELSQTTAKVSFN 217
Query: 194 VPDSEDGRP 202
PDS G P
Sbjct: 218 KPDSHGGVP 226
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 36/189 (19%)
Query: 221 AHFEASLIPVGDQTMTVEFLYNGKPI--------EASHRIRTVHAFGMVVLEILGTKIED 272
A F A + Q +T+E G P+ + S + + + +L I ED
Sbjct: 211 AKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSS--EPLLHIQNVDFED 268
Query: 273 TGVYTCRATNKWG----QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTL 328
G Y C A N G Q I ++ + P + I E G + C
Sbjct: 269 EGTYECEAENIKGRDTYQGRIIIHAQ---------PDWLDVITDTEA-DIGSDLRWSCVA 318
Query: 329 TPVNDPELKVEWFHNGKPIFHKNRVKMVSD---FGFVVMDIAYVQSHDSGEYVCRAWNKY 385
+ P V W +G+P+ +NR+++ F +V++ DSG Y C A NK+
Sbjct: 319 S--GKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLE-------DSGMYQCVAENKH 369
Query: 386 GEDFTRATI 394
G + A +
Sbjct: 370 GTVYASAEL 378
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 30/119 (25%)
Query: 564 ENSGVYECRATNKYGSDVTKAS---------LKCVSKTNLILESQL-----------PEV 603
E+ G YEC A N G D + L ++ T + S L P V
Sbjct: 267 EDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAV 326
Query: 604 EWFYNGKKLPHGHRYRTFHD---FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
W +G+ L +R F ++L E+SG+Y+C A NK+G+ A L
Sbjct: 327 RWLRDGQPLASQNRIEVSGGELRFSKLVL-------EDSGMYQCVAENKHGTVYASAEL 378
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 57/150 (38%), Gaps = 42/150 (28%)
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
E+ G YEC A N G D + +I+ +Q PD D
Sbjct: 267 EDEGTYECEAENIKGRDTYQG--------RIIIHAQ-----------PDWLD-------- 299
Query: 697 EFQHLSNLSEGEI-AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA---FGMVVL 752
+ +E +I + S + G V +L +G+P+ + +RI F +VL
Sbjct: 300 ----VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVL 355
Query: 753 EILGTKIEDTGVYTCRATNKWGQAEISVNL 782
E D+G+Y C A NK G S L
Sbjct: 356 E-------DSGMYQCVAENKHGTVYASAEL 378
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 56/144 (38%), Gaps = 11/144 (7%)
Query: 251 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHI 310
R + G L I +D+G YTC T K S L + PP F +H
Sbjct: 265 RSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL-----VPPWFLNHP 319
Query: 311 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQ 370
+L + D FEC ++ P V W NG + + ++V G + I V
Sbjct: 320 SNLYAYESMD-IEFECAVS--GKPVPTVNWMKNGDVVIPSDYFQIV---GGSNLRILGVV 373
Query: 371 SHDSGEYVCRAWNKYGEDFTRATI 394
D G Y C A N+ G + A +
Sbjct: 374 KSDEGFYQCVAENEAGNAQSSAQL 397
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
PP F H SNL E E G TV ++ NG + S + V G
Sbjct: 312 PPWF---LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGS 365
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
L ILG D G Y C A N+ G A+ S L
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
PP F H SNL E E G TV ++ NG + S + V G
Sbjct: 312 PPWF---LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGS 365
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
L ILG D G Y C A N+ G A+ S L
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 272 DTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPV 331
D G+Y C A+ + IS + + P +F S +S+ GD+ +C + +
Sbjct: 93 DEGLYQCEASLGDSGSIISRTAKVM---VAGPLRFLSQTESITAFM-GDTVLLKCEV--I 146
Query: 332 NDPELKVEWFHNGK---PIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWN 383
DP + W N + PI +RV ++ + I+ +Q DSG Y C A N
Sbjct: 147 GDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA---LQISRLQPGDSGVYRCSARN 198
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD-FGFV 362
P FT I ++ + +G +A F+C + DPE V WF + P+ ++ D G
Sbjct: 42 PYFTKTILDMD-VVEGSAARFDCKVEGYPDPE--VMWFKDDNPVKESRHFQIDYDEEGNC 98
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGE 387
+ I+ V D +Y C+A N GE
Sbjct: 99 SLTISEVCGDDDAKYTCKAVNSLGE 123
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
E+ KP F + + + E + +VE DP ++ W + P++ F+
Sbjct: 36 EKPHVKPYFTKTIL-DMDVVEGSAARFDCKVEGYPDP--EVMWFKDDNPVKESRHFQIDY 92
Query: 120 DF-GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCST 160
D G +L ++EV D YTC+A N GE + + T
Sbjct: 93 DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 12/193 (6%)
Query: 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH--AFGM 260
P F + + LS G +A F G+ + ++ GK + +S R +
Sbjct: 8 PVFVKVPEDQTGLSGG-VASFVCQA--TGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAG 63
Query: 261 VVLEILGTKIE-DTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS--HIKSLEGLK 317
VL I +++ D +Y C ATN G+ S L +++ + P F + L+ ++
Sbjct: 64 SVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQ-LPSGFPTIDMGPQLKVVE 122
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
G +A C DPE + WF + P+ + + I + D G+Y
Sbjct: 123 KGRTATMLCAAGGNPDPE--ISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKY 180
Query: 378 VCRAWNKYGEDFT 390
C A N G ++
Sbjct: 181 ECVATNSAGTRYS 193
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 27/177 (15%)
Query: 601 PEVEWFYNGKKLPHGHRYRT--FHDFGIVILDILYC-YEENSGVYECRATNKYGSDVTKA 657
P + W GKK+ R+ F D +L I + + +YEC ATN G T A
Sbjct: 37 PRITWMKKGKKV-SSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSA 95
Query: 658 SLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLI 717
L +++ E QL P+G P + G PQ L + +G A +
Sbjct: 96 KL------SVLEEDQL------PSGFPTIDMG--PQ-------LKVVEKGRTATMLCAA- 133
Query: 718 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
G+ + + + P++ + + L+I ++ D G Y C ATN G
Sbjct: 134 -GGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 189
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 89/226 (39%), Gaps = 46/226 (20%)
Query: 64 AKPVFI-VPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA--D 120
+KPVF+ VP G +A EPK +I W+ GK + RF+ D
Sbjct: 6 SKPVFVKVPEDQTGLSGGVASFVCQATGEPKP----RITWMKKGKKVS-SQRFEVIEFDD 60
Query: 121 FGFVTLDLTEV-YDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
L + + RD+ IY C A N GE I S K S++E Q P G ++
Sbjct: 61 GAGSVLRIQPLRVQRDEAIYECTATNSLGE------INTSAKLSVLEEDQLPSGFPTIDM 114
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 239
L+ + + A + + G P + EI+ F+ +PV
Sbjct: 115 GPQLKVVEKGRTATMLCAAGGNP--------------DPEISWFK-DFLPV--------- 150
Query: 240 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 285
P ++ RI+ + + L+I ++ D G Y C ATN G
Sbjct: 151 ----DPAASNGRIKQLRSG---ALQIESSEESDQGKYECVATNSAG 189
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 599 QLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
Q +V W++ ++L + +Y ++ G+ IL + + + G Y C+ N YG D + A
Sbjct: 30 QSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAE 89
Query: 659 L 659
L
Sbjct: 90 L 90
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 525 DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
D V W++ ++L + +Y ++ G+ IL + + + G Y C+ N YG D + A
Sbjct: 29 DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA 88
Query: 585 SL 586
L
Sbjct: 89 EL 90
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 333 DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRA 392
D +V W+ + + + + ++ + G ++ + + D G Y C+ N YGED + A
Sbjct: 29 DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA 88
Query: 393 TIKCFGKG 400
+ F KG
Sbjct: 89 EL--FVKG 94
Score = 32.7 bits (73), Expect = 0.79, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
D + ++ W F + LE +++ T + G L + ++ D G Y C+ N GE
Sbjct: 29 DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE 83
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 232 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 286
DQ+ V + + + +E S + + G+ +L + D G Y C+ N +G+
Sbjct: 29 DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE 83
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775
DQ+ V + + + +E S + + G+ +L + D G Y C+ N +G+
Sbjct: 29 DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE 83
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 19/199 (9%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH----A 257
PP+FT + +S G +A F GD + + GK + ++ R + +
Sbjct: 6 PPRFTRTPVDQTGVSGG-VASFICQA--TGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGS 61
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIK---SLE 314
++ ++ L T D +Y C A+N G+ +S L + + Q P+ I L+
Sbjct: 62 GSVLRIQPLRTP-RDEAIYECVASNNVGEISVSTRLTVLRED--QIPRGFPTIDMGPQLK 118
Query: 315 GLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN---RVKMVSDFGFVVMDIAYVQS 371
++ +A C + DPE + WF + P+ N R+K + + I +
Sbjct: 119 VVERTRTATMLCAASGNPDPE--ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE 176
Query: 372 HDSGEYVCRAWNKYGEDFT 390
D G+Y C A N G ++
Sbjct: 177 SDQGKYECVATNSAGTRYS 195
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 44/197 (22%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTA--DFGFVTLDLTEVYD-RDQGIYTCRAWNLAGETF 151
DP KI W GK + RF+ D L + + RD+ IY C A N GE
Sbjct: 33 DPRPKIVWNKKGKKVS-NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGE-- 89
Query: 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
I ST+ +++ Q P+G ++ L+ R + A + + G P
Sbjct: 90 ----ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNP--------- 136
Query: 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH---RIRTVHAFGMVVLEILGT 268
+ EI F+ +FL P++ S+ RI+ + + + L+I +
Sbjct: 137 -----DPEITWFK-------------DFL----PVDTSNNNGRIKQLRSESIGALQIEQS 174
Query: 269 KIEDTGVYTCRATNKWG 285
+ D G Y C ATN G
Sbjct: 175 EESDQGKYECVATNSAG 191
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 30/180 (16%)
Query: 601 PEVEWFYNGKKLPHGHRYRT--FHDFGIVILDILYCYE-ENSGVYECRATNKYGSDVTKA 657
P++ W GKK+ + R+ F D +L I + +YEC A+N G
Sbjct: 36 PKIVWNKKGKKVSN-QRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGE----- 89
Query: 658 SLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLI 717
+ ++ ++ E Q+P G P + G PQ + + AS
Sbjct: 90 -ISVSTRLTVLREDQIPR------GFPTIDMG--PQL-----KVVERTRTATMLCAASGN 135
Query: 718 PVGDQTMTVEFLYNGKPIEASH---RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
P + T +FL P++ S+ RI+ + + + L+I ++ D G Y C ATN G
Sbjct: 136 PDPEITWFKDFL----PVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAG 191
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 21/128 (16%)
Query: 271 EDTGVYTCRATNKWGQ--AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTL 328
+D G YTC + + GQ E+S++L + P K T + S + G+ A C+
Sbjct: 75 KDNGEYTCMVSEEGGQNYGEVSIHLTVLVP----PSKPTISVPS--SVTIGNRAVLTCSE 128
Query: 329 TPVNDPELKVEWFHNGKPIF----HKNRVKMVSDF------GFVVMDIAYVQSHDSGEYV 378
P + WF +G + K R M S F G ++ D V + DSGEY
Sbjct: 129 HD-GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP--VTAFDSGEYY 185
Query: 379 CRAWNKYG 386
C+A N YG
Sbjct: 186 CQAQNGYG 193
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
Query: 598 SQLPEVEWFYNGK-------------KLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644
S +PE++W++ G+ +L H + T+H + I EE++G YEC
Sbjct: 48 SPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYEC 107
Query: 645 RATN 648
RA+N
Sbjct: 108 RASN 111
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 515 HFEARLTPVTD---------PDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 565
H EA +PV + P+ + ++G +L H + T+H + I EE+
Sbjct: 42 HCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEED 101
Query: 566 SGVYECRATN 575
+G YECRA+N
Sbjct: 102 TGTYECRASN 111
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 240 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 282
L++G ++ H T H + I EDTG Y CRA+N
Sbjct: 69 LWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASN 111
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 729 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771
L++G ++ H T H + I EDTG Y CRA+N
Sbjct: 69 LWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASN 111
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
Query: 598 SQLPEVEWFYNGK-------------KLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644
S +PE++W++ G+ +L H + T+H + I EE++G YEC
Sbjct: 48 SPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYEC 107
Query: 645 RATN 648
RA+N
Sbjct: 108 RASN 111
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 515 HFEARLTPVTD---------PDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 565
H EA +PV + P+ + ++G +L H + T+H + I EE+
Sbjct: 42 HCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISIDTLVEED 101
Query: 566 SGVYECRATN 575
+G YECRA+N
Sbjct: 102 TGTYECRASN 111
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 240 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 282
L++G ++ H T H + I EDTG Y CRA+N
Sbjct: 69 LWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASN 111
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 729 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771
L++G ++ H T H + I EDTG Y CRA+N
Sbjct: 69 LWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASN 111
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 80 EAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIY 139
E Q L+ V + P +I W+ NG+P++ ++T + G L + + D G Y
Sbjct: 25 EGQDFVLQCSV--RGTPVPRITWLLNGQPIQYA---RSTCEAGVAELHIQDALPEDHGTY 79
Query: 140 TCRAWNLAGETFTSTTI 156
TC A N G+ S +
Sbjct: 80 TCLAENALGQVSCSAWV 96
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 237 VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
+ +L NG+PI+ + R+ G+ L I ED G YTC A N GQ S
Sbjct: 43 ITWLLNGQPIQYA---RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCS 93
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 726 VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
+ +L NG+PI+ + R+ G+ L I ED G YTC A N GQ S
Sbjct: 43 ITWLLNGQPIQYA---RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCS 93
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 598 SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
+ +P + W NG+ + + R+ + G+ L I E+ G Y C A N G
Sbjct: 38 TPVPRITWLLNGQPIQYA---RSTCEAGVAELHIQDALPEDHGTYTCLAENALG 88
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 25/176 (14%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA--E 288
GD T V YN K I AS+ R F + EDTG YTC + + G + E
Sbjct: 43 GDTTRLV--CYNNK-ITASYEDRVT--FLPTGITFKSVTREDTGTYTCMVSEEGGNSYGE 97
Query: 289 ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI- 347
+ V L + P K T +I S + G+ A C+ P + WF +G +
Sbjct: 98 VKVKLIVLVP----PSKPTVNIPSSATI--GNRAVLTCSEQD-GSPPSEYTWFKDGIVMP 150
Query: 348 --------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
F + + G +V D + + D+GEY C A N YG T ++
Sbjct: 151 TNPKSTRAFSNSSYVLNPTTGELVFDP--LSASDTGEYSCEARNGYGTPMTSNAVR 204
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 39/198 (19%)
Query: 582 TKASLKCVSKTNLILES-----QLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYE 636
T +S + +L+LE P++ W+ G LP F +F L I E
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA--KFENFNKA-LRITNVSE 284
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
E+SG Y C A+NK GS S++ + P +
Sbjct: 285 EDSGEYFCLASNKMGSIRHTISVRVKAA---------------------------PYWLD 317
Query: 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG 756
E ++L L+ GE G+ TV+++ NG+P++++ G ++
Sbjct: 318 EPKNLI-LAPGEDGRLVCRA--NGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTII-FRD 373
Query: 757 TKIEDTGVYTCRATNKWG 774
T+I VY C +N+ G
Sbjct: 374 TQISSRAVYQCNTSNEHG 391
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 62/164 (37%), Gaps = 30/164 (18%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 569
G E + V PD + W+ G LP F +F L I EE+SG Y
Sbjct: 236 RGMDLLLECIASGVPTPD--IAWYKKGGDLPSDKA--KFENFNKA-LRITNVSEEDSGEY 290
Query: 570 ECRATNKYGSDVTKASLKCVSK-------TNLILE-------------SQLPEVEWFYNG 609
C A+NK GS S++ + NLIL + P V+W NG
Sbjct: 291 FCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNG 350
Query: 610 KKLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
+ L + R I+ D + VY+C +N++G
Sbjct: 351 EPLQSAPPNPNREVAGDTIIFRDTQI---SSRAVYQCNTSNEHG 391
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 17/129 (13%)
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAE--ISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
L I ED+G Y C A+NK G ISV ++ P + K+L L G
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA-------PYWLDEPKNLI-LAPG 327
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPI--FHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
+ C +P+ V+W NG+P+ N + V+ + D Q Y
Sbjct: 328 EDGRLVCRAN--GNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRD---TQISSRAVY 382
Query: 378 VCRAWNKYG 386
C N++G
Sbjct: 383 QCNTSNEHG 391
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 241 YN--GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNLECVD 297
YN G+ I ++ R+ L I IED G+Y C+AT+ GQ E +V LE
Sbjct: 36 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ 95
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS 357
K + + S + K G+ A C ++ + P V W ++H V +S
Sbjct: 96 KLTFR------EVVSPQEFKQGEDAEVVCRVS--SSPAPAVSW------LYHNEEVTTIS 141
Query: 358 DFGFVVM 364
D F ++
Sbjct: 142 DNRFAML 148
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 730 YN--GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNLE 783
YN G+ I ++ R+ L I IED G+Y C+AT+ GQ E +V LE
Sbjct: 36 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 92
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 88 AQVEPKNDPNLKIEWIF-NGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNL 146
A+++ + P ++W+ NG L SR + TL+ + V D G+YTC N+
Sbjct: 370 AELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNV 429
Query: 147 AGETFTSTTIYCST 160
AG + S + ST
Sbjct: 430 AGNSNASAYLNVST 443
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGHRYRTFHDFGIVIL 556
FI + EG+ A + R P++ V+W NG L H R+ L
Sbjct: 354 FIMDAPRDLNISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 557 DILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ + ++GVY C TN G+ A L
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 214 NLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIED 272
N+SEG +A + P+ +V++L NG + + R + L + D
Sbjct: 363 NISEGRMAELKCRTPPMS----SVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSD 418
Query: 273 TGVYTCRATNKWGQAEISVNLE 294
TGVYTC TN G + S L
Sbjct: 419 TGVYTCMVTNVAGNSNASAYLN 440
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIED 761
N+SEG +A + P+ +V++L NG + + R + L + D
Sbjct: 363 NISEGRMAELKCRTPPMS----SVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSD 418
Query: 762 TGVYTCRATNKWGQAEISVNLE 783
TGVYTC TN G + S L
Sbjct: 419 TGVYTCMVTNVAGNSNASAYLN 440
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 315 GLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHKNRVKMVSDFGFVVMDIAYVQSHD 373
+ +G A +C P++ V+W NG + H +R +S ++ ++V D
Sbjct: 363 NISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSD 418
Query: 374 SGEYVCRAWNKYGEDFTRATIKCFGKG 400
+G Y C N G A + G
Sbjct: 419 TGVYTCMVTNVAGNSNASAYLNVSTAG 445
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENS 566
++EGQ R+ +P VV W N + + P R+ + G+ L IL ++
Sbjct: 17 VREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDA 74
Query: 567 GVYECRATNKYGSDVTKASLK 587
G Y C+A N+YG+ +A L+
Sbjct: 75 GFYTCKAVNEYGARQCEARLE 95
Score = 36.6 bits (83), Expect = 0.060, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 289
G+ V +L N +P+ R A G+ L IL + D G YTC+A N++G +
Sbjct: 31 GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQC 90
Query: 290 SVNLE 294
LE
Sbjct: 91 EARLE 95
Score = 36.6 bits (83), Expect = 0.060, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 720 GDQTMTVEFLYNGKPIEASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
G+ V +L N +P+ R A G+ L IL + D G YTC+A N++G +
Sbjct: 31 GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQC 90
Query: 779 SVNLE 783
LE
Sbjct: 91 EARLE 95
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 601 PEVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P V W N + + P R+ + G+ L IL ++G Y C+A N+YG+ +A L
Sbjct: 35 PVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
Query: 660 K 660
+
Sbjct: 95 E 95
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR-FKTTADFG 122
A P F V L + + E Q + + +V+ +P + W+ N +P+ R F A+ G
Sbjct: 4 APPTFKVSLMDQ-SVREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAG 148
L + D G YTC+A N G
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYG 86
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 333 DPELKVEWFHNGKPIF-HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTR 391
+P+ V W N +P+ + R ++ G + I + D+G Y C+A N+YG
Sbjct: 32 EPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCE 91
Query: 392 ATIKCFGK 399
A ++ G+
Sbjct: 92 ARLEVRGE 99
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 8/140 (5%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD-GDS 321
L+I G K D G Y C A +N + + PP + + + G S
Sbjct: 157 LQIRGIKKTDEGTYRCEGR---ILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQS 213
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPIFHK--NRVKMVSDFGFVVMDIAYVQSHDSGEYVC 379
C PE + W +G+PI ++ + K + + I V +D EYVC
Sbjct: 214 VTLVCDADGF--PEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 271
Query: 380 RAWNKYGEDFTRATIKCFGK 399
A NK GE +K F K
Sbjct: 272 IAENKAGEQDASIHLKVFAK 291
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 263 LEILGTKIEDTGVYTCRATNKWG-QAEISVNLECVDKS--KGQPPKFTSHIKSLEGLKDG 319
L I I+D G+Y C T + G Q+E +VN++ K K P + + K+G
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP--------TPQEFKEG 115
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQ-----SHDS 374
+ A C + P + W H G+ + K V+ F+V+ Y+Q D
Sbjct: 116 EDAVIVCDVVSSLPP--TIIWKHKGRDVILKKDVR------FIVLSNNYLQIRGIKKTDE 167
Query: 375 GEYVC 379
G Y C
Sbjct: 168 GTYRC 172
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 90 VEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
V+ +P W +GK + G ++K + D G L++ + D G+YTC N AG
Sbjct: 28 VKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGS 87
Query: 150 TFTS 153
+S
Sbjct: 88 VSSS 91
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILD 557
+T + D T + A F + T P + W +GK + G +Y+ D G L+
Sbjct: 9 IVTGLQDTT-VSSDSVAKFAVKATGEPRPTAI--WTKDGKAITQGGKYKLSEDKGGFFLE 65
Query: 558 ILYCYEENSGVYECRATNKYGS 579
I +SG+Y C N GS
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGS 87
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
P W +GK + G +Y+ D G L+I +SG+Y C N GS
Sbjct: 36 PTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGS 87
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 332 NDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387
+P W +GK I + K+ D G ++I + DSG Y C N G
Sbjct: 32 GEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGS 87
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 213 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIED 272
+ +S +A F ++ G+ T + +GK I + + G LEI T D
Sbjct: 16 TTVSSDSVAKF--AVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSD 73
Query: 273 TGVYTCRATNKWGQAEISVNL 293
+G+YTC N G S L
Sbjct: 74 SGLYTCTVKNSAGSVSSSCKL 94
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 702 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIED 761
+ +S +A F ++ G+ T + +GK I + + G LEI T D
Sbjct: 16 TTVSSDSVAKF--AVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSD 73
Query: 762 TGVYTCRATNKWGQAEISVNL 782
+G+YTC N G S L
Sbjct: 74 SGLYTCTVKNSAGSVSSSCKL 94
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
L I ++ D+GV+ C A N +G A ++ LE VDK
Sbjct: 250 LTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK 285
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785
L I ++ D+GV+ C A N +G A ++ LE V
Sbjct: 250 LTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 283
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
L I ++ D+GV+ C A N +G A ++ LE VDK
Sbjct: 275 LTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK 310
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785
L I ++ D+GV+ C A N +G A ++ LE V
Sbjct: 275 LTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 308
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 88 AQVEPKNDPNLKIEWIF-NGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNL 146
A+++ + P ++W+ NG L SR + TL+ + V D G+YTC N+
Sbjct: 25 AELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNV 84
Query: 147 AGETFTSTTIYCSTKES 163
AG + S + S+ S
Sbjct: 85 AGNSNASAYLNVSSGPS 101
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGHRYRTFHDFGIVIL 556
FI + EG+ A + R P++ V+W NG L H R+ L
Sbjct: 9 FIMDAPRDLNISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGTL 64
Query: 557 DILYCYEENSGVYECRATNKYGSDVTKASLKCVS 590
+ + ++GVY C TN G+ A L S
Sbjct: 65 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSS 98
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 214 NLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIED 272
N+SEG +A + P+ +V++L NG + + R + L + D
Sbjct: 18 NISEGRMAELKCRTPPMS----SVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSD 73
Query: 273 TGVYTCRATNKWGQAEISVNL 293
TGVYTC TN G + S L
Sbjct: 74 TGVYTCMVTNVAGNSNASAYL 94
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIED 761
N+SEG +A + P+ +V++L NG + + R + L + D
Sbjct: 18 NISEGRMAELKCRTPPMS----SVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSD 73
Query: 762 TGVYTCRATNKWGQAEISVNL 782
TGVYTC TN G + S L
Sbjct: 74 TGVYTCMVTNVAGNSNASAYL 94
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 565
T++ EGQSA+F R+ + P VV W + ++L +Y ++ L I ++
Sbjct: 492 TEVGEGQSANFYCRVIASSPP--VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDD 549
Query: 566 SGVYECRATNKYGS 579
G Y RA N YG+
Sbjct: 550 KGEYTVRAKNSYGT 563
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 288 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI 347
E S+ D+S+ QP +F E + +G SA+F C + + P V W + + +
Sbjct: 468 EYSIRDAFWDRSEAQP-RFIVKPYGTE-VGEGQSANFYCRVIASSPP--VVTWHKDDREL 523
Query: 348 FHKNRVKMV-----SDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
K VK + +D+G I V+ D GEY RA N YG
Sbjct: 524 --KQSVKYMKRYNGNDYGLT---INRVKGDDKGEYTVRAKNSYG 562
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 565
T++ EGQSA+F R+ + P VV W + ++L +Y ++ L I ++
Sbjct: 386 TEVGEGQSANFYCRVIASSPP--VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDD 443
Query: 566 SGVYECRATNKYGS 579
G Y RA N YG+
Sbjct: 444 KGEYTVRAKNSYGT 457
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 288 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI 347
E S+ D+S+ QP +F E + +G SA+F C + + P V W + + +
Sbjct: 362 EYSIRDAFWDRSEAQP-RFIVKPYGTE-VGEGQSANFYCRVIASSPP--VVTWHKDDREL 417
Query: 348 FHKNRVKMV-----SDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
K VK + +D+G I V+ D GEY RA N YG
Sbjct: 418 --KQSVKYMKRYNGNDYGLT---INRVKGDDKGEYTVRAKNSYG 456
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 263 LEILGTKIEDTGVYTCRATNKWG-QAEISVNLECVDKS--KGQPPKFTSHIKSLEGLKDG 319
L I I+D G+Y C T + G Q+E +VN++ K K P + + K+G
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP--------TPQEFKEG 115
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH-----DS 374
+ A C + P + W H G+ + K V+ F+V+ Y+Q D
Sbjct: 116 EDAVIVCDVVSSLPP--TIIWKHKGRDVILKKDVR------FIVLSNNYLQIRGIKKTDE 167
Query: 375 GEYVC 379
G Y C
Sbjct: 168 GTYRC 172
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 334 PELKVEWFHNGKPIFHK-NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRA 392
PE + W +G+PI + N K ++ + I V D EY+C A NK GE
Sbjct: 41 PEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQDATI 100
Query: 393 TIKCFGK 399
+K F K
Sbjct: 101 HLKVFAK 107
>pdb|1MUJ|A Chain A, Crystal Structure Of Murine Class Ii Mhc I-Ab In Complex
With A Human Clip Peptide
Length = 190
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 27 LETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHL 86
L + P G GL+ + V+H L +R S P A + P P LG QP L
Sbjct: 55 LASFDPQG--GLQNIAVVKHNLGVLTKRSNSTPATNEAPQATVFPKSPVL-LG--QPNTL 109
Query: 87 EAQVEPKNDPNLKIEWIFNGKPLELG---SRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143
V+ P + I W+ N K + G + F D+ F L D IY C+
Sbjct: 110 ICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKV 169
Query: 144 --WNL 146
W L
Sbjct: 170 EHWGL 174
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 15/198 (7%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV--HAFG 259
PP+ + Q+ + G +A F + GD ++ + NGK + + TV G
Sbjct: 8 PPEIIRKPQN-QGVRVGGVASFYCAA--RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 64
Query: 260 MVVLEILGTKI-EDTGVYTCRATNKWG---QAEISVNLECVDKSKGQPPKFTSHIKSLEG 315
+ +L I + D Y C A N G A+ ++ + DK+ P T
Sbjct: 65 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQG-PGTRV 123
Query: 316 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSG 375
++ G + C + +P + W N + N + D GF + I + D G
Sbjct: 124 IEVGHTVLMTCKA--IGNPTPNIYWIKNQTKVDMSNPRYSLKD-GF--LQIENSREEDQG 178
Query: 376 EYVCRAWNKYGEDFTRAT 393
+Y C A N G + ++AT
Sbjct: 179 KYECVAENSMGTEHSKAT 196
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 61/165 (36%), Gaps = 34/165 (20%)
Query: 525 DPDLVVEWFYNGKKLPHGH-RYRTF-HDFGIVILDILYCYE-ENSGVYECRATNKYG--- 578
DP + W NGKK+ RY GI IL I + YEC A N G
Sbjct: 35 DPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV 94
Query: 579 ----------SDVTKASLKCVSK---TNLI------------LESQLPEVEWFYNGKKLP 613
D T A +++ T +I + + P + W N K+
Sbjct: 95 SADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVD 154
Query: 614 HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
+ + D L I EE+ G YEC A N G++ +KA+
Sbjct: 155 MSNPRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEHSKAT 196
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 230 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 289
G Q +T ++ K I+ S ++ ++ L IL + E G YT NK G +
Sbjct: 32 TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA 91
Query: 290 SVNLECVDKSKGQPPKFT 307
VNL VDK PP T
Sbjct: 92 QVNLTVVDKP--DPPAGT 107
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 719 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
G Q +T ++ K I+ S ++ ++ L IL + E G YT NK G +
Sbjct: 32 TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA 91
Query: 779 SVNLECV 785
VNL V
Sbjct: 92 QVNLTVV 98
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 202 PPQFTSEFQHLSNLSEGEIAH--FEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHA 257
PP+F +++S + EG F+ S +P D V + NG+ +++ H++ V
Sbjct: 5 PPRFIQVPENMS-IDEGRFCRMDFKVSGLPAPD----VSWYLNGRTVQSDDLHKM-IVSE 58
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
G+ L + D G Y C A N+ G+A +V L+ + K
Sbjct: 59 KGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM-VSDFGF 361
PP+F +++ + +G + ++ + P+ V W+ NG+ + + KM VS+ G
Sbjct: 5 PPRFIQVPENMS-IDEGRFCRMDFKVSGLPAPD--VSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGE 387
+ V++ D+G Y C A N+ GE
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGE 87
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 691 PPQFTSEFQHLSNLSEGEIAH--FEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHA 746
PP+F +++S + EG F+ S +P D V + NG+ +++ H++ V
Sbjct: 5 PPRFIQVPENMS-IDEGRFCRMDFKVSGLPAPD----VSWYLNGRTVQSDDLHKM-IVSE 58
Query: 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785
G+ L + D G Y C A N+ G+A +V L+ +
Sbjct: 59 KGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 96 PNLKIEWIFNGKPLELGSRFKT-TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE-TFT 152
P + W NG+ ++ K ++ G +L V D G Y C A N AGE TFT
Sbjct: 33 PAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFT 91
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 68/177 (38%), Gaps = 27/177 (15%)
Query: 601 PEVEWFYNGKKLPHGHRYRT--FHDFGIVILDILYCYE-ENSGVYECRATNKYGSDVTKA 657
P V W GKK+ + R+ T F + +L I + VYEC A N G A
Sbjct: 36 PRVTWNKKGKKV-NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHA 94
Query: 658 SLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLI 717
L ++ E QLP +G P+ + G PQ + + AS
Sbjct: 95 KL------TVLREDQLP------SGFPNIDMG--PQL-----KVVERTRTATMLCAASGN 135
Query: 718 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
P + T +FL P++ S + L+I ++ D G Y C ATN G
Sbjct: 136 PDPEITWFKDFL----PVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 64/185 (34%), Gaps = 34/185 (18%)
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--FHDFGIV 554
+FI + D + G A F + T DP V W GKK+ + R+ T F +
Sbjct: 8 RFIKEPKDQIGVS-GGVASFVCQAT--GDPKPRVTWNKKGKKV-NSQRFETIEFDESAGA 63
Query: 555 ILDILYCYE-ENSGVYECRATNKYGSDVTKASLKCVSKT-------NLILESQL------ 600
+L I + VYEC A N G A L + + N+ + QL
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 601 --------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRA 646
PE+ WF + + L I E + G YEC A
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Query: 647 TNKYG 651
TN G
Sbjct: 184 TNSAG 188
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 41/194 (21%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTA---DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151
DP ++ W GK + RF+T G V RD+ +Y C A N GE
Sbjct: 33 DPKPRVTWNKKGKKVN-SQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGE-- 89
Query: 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
I K +++ Q P G ++ L+ R + A + + G P
Sbjct: 90 ----ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP--------- 136
Query: 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 271
+ EI F+ +PV P ++ RI+ + + L+I ++
Sbjct: 137 -----DPEITWFK-DFLPV-------------DPSASNGRIKQLRSGA---LQIESSEET 174
Query: 272 DTGVYTCRATNKWG 285
D G Y C ATN G
Sbjct: 175 DQGKYECVATNSAG 188
>pdb|1LNU|A Chain A, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|C Chain C, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|E Chain E, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|G Chain G, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|3C5Z|C Chain C, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C5Z|G Chain G, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C60|C Chain C, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C60|G Chain G, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C6L|C Chain C, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3C6L|G Chain G, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3RDT|C Chain C, Crystal Structure Of 809.B5 Tcr Complexed With Mhc Class
Ii I-Ab3K Peptide
Length = 182
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 27 LETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHL 86
L + P G GL+ + V+H L +R S P A + P P LG QP L
Sbjct: 52 LASFDPQG--GLQNIAVVKHNLGVLTKRSNSTPATNEAPQATVFPKSPVL-LG--QPNTL 106
Query: 87 EAQVEPKNDPNLKIEWIFNGKPLELG---SRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143
V+ P + I W+ N K + G + F D+ F L D IY C+
Sbjct: 107 ICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKV 166
Query: 144 --WNL 146
W L
Sbjct: 167 EHWGL 171
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 68/177 (38%), Gaps = 27/177 (15%)
Query: 601 PEVEWFYNGKKLPHGHRYRT--FHDFGIVILDILYCYE-ENSGVYECRATNKYGSDVTKA 657
P V W GKK+ + R+ T F + +L I + VYEC A N G A
Sbjct: 36 PRVTWNKKGKKV-NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHA 94
Query: 658 SLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLI 717
L ++ E QLP +G P+ + G PQ + + AS
Sbjct: 95 KL------TVLREDQLP------SGFPNIDMG--PQL-----KVVERTRTATMLCAASGN 135
Query: 718 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
P + T +FL P++ S + L+I ++ D G Y C ATN G
Sbjct: 136 PDPEITWFKDFL----PVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 64/185 (34%), Gaps = 34/185 (18%)
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--FHDFGIV 554
+FI + D + G A F + T DP V W GKK+ + R+ T F +
Sbjct: 8 RFIKEPKDQIGVS-GGVASFVCQAT--GDPKPRVTWNKKGKKV-NSQRFETIEFDESAGA 63
Query: 555 ILDILYCYE-ENSGVYECRATNKYGSDVTKASLKCVSKT-------NLILESQL------ 600
+L I + VYEC A N G A L + + N+ + QL
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 601 --------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRA 646
PE+ WF + + L I E + G YEC A
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Query: 647 TNKYG 651
TN G
Sbjct: 184 TNSAG 188
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 41/194 (21%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTA---DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151
DP ++ W GK + RF+T G V RD+ +Y C A N GE
Sbjct: 33 DPKPRVTWNKKGKKVN-SQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGE-- 89
Query: 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
I K +++ Q P G ++ L+ R + A + + G P
Sbjct: 90 ----ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP--------- 136
Query: 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 271
+ EI F+ +PV P ++ RI+ + + L+I ++
Sbjct: 137 -----DPEITWFK-DFLPV-------------DPSASNGRIKQLRSGA---LQIESSEET 174
Query: 272 DTGVYTCRATNKWG 285
D G Y C ATN G
Sbjct: 175 DQGKYECVATNSAG 188
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 15/198 (7%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV--HAFG 259
PP+ + Q+ + G +A F + GD ++ + NGK + + TV G
Sbjct: 6 PPEIIRKPQN-QGVRVGGVASFYCAA--RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 260 MVVLEILGTKI-EDTGVYTCRATNKWG---QAEISVNLECVDKSKGQPPKFTSHIKSLEG 315
+ +L I + D Y C A N G A+ ++ + DK+ P T
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQG-PGTRV 121
Query: 316 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSG 375
++ G + C + +P + W N + N + D GF + I + D G
Sbjct: 122 IEVGHTVLMTCKA--IGNPTPNIYWIKNQTKVDMSNPRYSLKD-GF--LQIENSREEDQG 176
Query: 376 EYVCRAWNKYGEDFTRAT 393
+Y C A N G + ++AT
Sbjct: 177 KYECVAENSMGTEHSKAT 194
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 62/166 (37%), Gaps = 36/166 (21%)
Query: 525 DPDLVVEWFYNGKKLPHGH-RYRTFHD-FGIVILDILYCYE-ENSGVYECRATNKYG--- 578
DP + W NGKK+ RY GI IL I + YEC A N G
Sbjct: 33 DPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV 92
Query: 579 ----------SDVTKASLKCVSK---TNLI------------LESQLPEVEWFYNGKKLP 613
D T A +++ T +I + + P + W N K+
Sbjct: 93 SADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVD 152
Query: 614 HGH-RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
+ RY F L I EE+ G YEC A N G++ +KA+
Sbjct: 153 MSNPRYSLKDGF----LQIENSREEDQGKYECVAENSMGTEHSKAT 194
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN-KWG-QAEIS 290
+ + V + +NG I S R++T + L+I D G Y + K G Q +
Sbjct: 31 EDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD 90
Query: 291 VNLECVDKSKGQPPKFT-------SHIKSLEGLKD------GDSAHFECTLTPVNDPELK 337
++ + D++ + + + + L GL D G + + C + DP +
Sbjct: 91 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW--GDPPPE 148
Query: 338 VEWFHNGKPIFHKNRVKMVSDFGFVV-MDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396
V W N K + + + + G I V + DSG+Y NKYG + + T+
Sbjct: 149 VSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Query: 397 F 397
F
Sbjct: 209 F 209
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 42/123 (34%), Gaps = 22/123 (17%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD--KSKGQPPKFTSHIKSLEGLKDGD 320
L I +ED+G Y C N G + L +K PP T G
Sbjct: 272 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF--------GR 323
Query: 321 SAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCR 380
A F C T +P V W +GK I H V+ I V+ D G Y C
Sbjct: 324 PAVFTCQYT--GNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCF 371
Query: 381 AWN 383
N
Sbjct: 372 VRN 374
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 51/147 (34%), Gaps = 40/147 (27%)
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
E+SG Y C N G + + T L + + L P D GRP FT
Sbjct: 280 EDSGKYLCVVNNSVGGESVE--------TVLTVTAPLSAKIDPPTQTVDF--GRPAVFTC 329
Query: 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG 756
++ G+ TV ++ +GK I S VL I
Sbjct: 330 QY--------------------TGNPIKTVSWMKDGKAIGHSES----------VLRIES 359
Query: 757 TKIEDTGVYTCRATNKWGQAEISVNLE 783
K ED G+Y C N AE S L+
Sbjct: 360 VKKEDKGMYQCFVRNDRESAEASAELK 386
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 241 YNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
Y G PI+ ++ A G VL I K ED G+Y C N AE S L+
Sbjct: 331 YTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 42/123 (34%), Gaps = 22/123 (17%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD--KSKGQPPKFTSHIKSLEGLKDGD 320
L I +ED+G Y C N G + L +K PP T G
Sbjct: 278 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF--------GR 329
Query: 321 SAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCR 380
A F C T +P V W +GK I H V+ I V+ D G Y C
Sbjct: 330 PAVFTCQYT--GNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCF 377
Query: 381 AWN 383
N
Sbjct: 378 VRN 380
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 51/147 (34%), Gaps = 40/147 (27%)
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
E+SG Y C N G + + T L + + L P D GRP FT
Sbjct: 286 EDSGKYLCVVNNSVGGESVE--------TVLTVTAPLSAKIDPPTQTVDF--GRPAVFTC 335
Query: 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG 756
++ G+ TV ++ +GK I S VL I
Sbjct: 336 QY--------------------TGNPIKTVSWMKDGKAIGHSES----------VLRIES 365
Query: 757 TKIEDTGVYTCRATNKWGQAEISVNLE 783
K ED G+Y C N AE S L+
Sbjct: 366 VKKEDKGMYQCFVRNDRESAEASAELK 392
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 241 YNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
Y G PI+ ++ A G VL I K ED G+Y C N AE S L+
Sbjct: 337 YTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 392
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 42/123 (34%), Gaps = 22/123 (17%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD--KSKGQPPKFTSHIKSLEGLKDGD 320
L I +ED+G Y C N G + L +K PP T G
Sbjct: 275 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF--------GR 326
Query: 321 SAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCR 380
A F C T +P V W +GK I H V+ I V+ D G Y C
Sbjct: 327 PAVFTCQYT--GNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCF 374
Query: 381 AWN 383
N
Sbjct: 375 VRN 377
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 51/147 (34%), Gaps = 40/147 (27%)
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
E+SG Y C N G + + T L + + L P D GRP FT
Sbjct: 283 EDSGKYLCVVNNSVGGESVE--------TVLTVTAPLSAKIDPPTQTVDF--GRPAVFTC 332
Query: 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG 756
++ G+ TV ++ +GK I S VL I
Sbjct: 333 QY--------------------TGNPIKTVSWMKDGKAIGHSES----------VLRIES 362
Query: 757 TKIEDTGVYTCRATNKWGQAEISVNLE 783
K ED G+Y C N AE S L+
Sbjct: 363 VKKEDKGMYQCFVRNDRESAEASAELK 389
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 241 YNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
Y G PI+ ++ A G VL I K ED G+Y C N AE S L+
Sbjct: 334 YTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 389
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLE 753
F S + L + GE A + G +++ NG P+E++H I+ H VL
Sbjct: 202 FGSGMESLVEATVGERVRIPAKYL--GYPPPEIKWYKNGIPLESNHTIKAGH-----VLT 254
Query: 754 ILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791
I+ DTG YT TN + + S + VV+ P Q
Sbjct: 255 IMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQ 292
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 79/216 (36%), Gaps = 44/216 (20%)
Query: 205 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLE 264
F S + L + GE A + G +++ NG P+E++H I+ H VL
Sbjct: 202 FGSGMESLVEATVGERVRIPAKYL--GYPPPEIKWYKNGIPLESNHTIKAGH-----VLT 254
Query: 265 ILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKF--TSHIKSLEGLKDGDSA 322
I+ DTG YT TN + + S V PP+ S I ++ + G +
Sbjct: 255 IMEVSERDTGNYTVILTNPISKEKQS---HVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ 311
Query: 323 HFECTLTPV-----------------NDPELKV---------EW-----FHNGKPI-FHK 350
CT+ + N+P V EW F G I +K
Sbjct: 312 TLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNK 371
Query: 351 NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
N+ ++ V + ++ S Y C A NK G
Sbjct: 372 NQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG 407
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
L I G D G+YTC A++ + S + +K F S ++SL G+
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPF---VAFGSGMESLVEATVGERV 218
Query: 323 HFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
PE+K W+ NG P+ + +K V+ I V D+G Y
Sbjct: 219 RIPAKYLGYPPPEIK--WYKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNY 266
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
L I +++D+GV+ C A N +G A ++ L+ V+K
Sbjct: 254 LTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785
L I +++D+GV+ C A N +G A ++ L+ V
Sbjct: 254 LTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 307 TSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS----DFGFV 362
TSH+ LK GD+ CT+ V+ + W H +VK S DF +
Sbjct: 196 TSHL-----LKKGDTFTVVCTIKDVST-SVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYE 249
Query: 363 ---VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKG 400
+ I+ + DSG ++C A N +G T+K KG
Sbjct: 250 RQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 79/216 (36%), Gaps = 44/216 (20%)
Query: 205 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLE 264
F S + L + GE A + G +++ NG P+E++H I+ H VL
Sbjct: 332 FGSGMESLVEATVGERVRIPAKYL--GYPPPEIKWYKNGIPLESNHTIKAGH-----VLT 384
Query: 265 ILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKF--TSHIKSLEGLKDGDSA 322
I+ DTG YT TN + + S V PP+ S I ++ + G +
Sbjct: 385 IMEVSERDTGNYTVILTNPISKEKQS---HVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ 441
Query: 323 HFECTLTPV-----------------NDPELKV---------EW-----FHNGKPI-FHK 350
CT+ + N+P V EW F G I +K
Sbjct: 442 TLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNK 501
Query: 351 NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
N+ ++ V + ++ S Y C A NK G
Sbjct: 502 NQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG 537
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLE 753
F S + L + GE A + G +++ NG P+E++H I+ H VL
Sbjct: 332 FGSGMESLVEATVGERVRIPAKYL--GYPPPEIKWYKNGIPLESNHTIKAGH-----VLT 384
Query: 754 ILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791
I+ DTG YT TN + + S + VV+ P Q
Sbjct: 385 IMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQ 422
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 22/135 (16%)
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISV--NLECVDKSKGQPPKFTSHIKSLEGLK 317
++++E+ ++D G Y C A ++ + V L +++ P T ++++ +
Sbjct: 624 ILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA---PTITGNLEN-QTTS 679
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD------IAYVQS 371
G+S CT + +P ++ WF K+ +V D G V+ D I V+
Sbjct: 680 IGESIEVSCTAS--GNPPPQIMWF--------KDNETLVEDSGIVLKDGNRNLTIRRVRK 729
Query: 372 HDSGEYVCRAWNKYG 386
D G Y C+A + G
Sbjct: 730 EDEGLYTCQACSVLG 744
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
PE++W+ NG L H + H +L I+ E ++G Y TN
Sbjct: 360 PEIKWYKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTVILTN 402
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 10/118 (8%)
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
+ L I G D G+YTC A++ + S + +K F S ++SL G
Sbjct: 289 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPF---VAFGSGMESLVEATVG 345
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
+ PE+K W+ NG P+ + +K V+ I V D+G Y
Sbjct: 346 ERVRIPAKYLGYPPPEIK--WYKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNY 396
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 237 VEFLYNGKPIEASHRIRTVHAF--GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
V++ GK I A + F G L I +D VY RATN+ G + +LE
Sbjct: 36 VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE 95
Query: 295 CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--- 351
+K PK + ++ L+ G+ + + DP + + G+ + N
Sbjct: 96 VEVPAKIHLPKTLEGMGAVHALR-GEVVSIKIPFSGKPDPVIT---WQKGQDLIDNNGHY 151
Query: 352 RVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGED 388
+V + F +V V+ D+G YV A N++G D
Sbjct: 152 QVIVTRSFTSLVFPNG-VERKDAGFYVVCAKNRFGID 187
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 526 PDLVVEWFYNGKKL-PHGHRYRTFHDF--GIVILDILYCYEENSGVYECRATNKYGSDVT 582
P +V+W+ GK++ G +YR +F G L I ++++ VY+ RATN+ GS
Sbjct: 32 PKPIVKWYRQGKEIIADGLKYR-IQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90
Query: 583 KASLKC 588
ASL+
Sbjct: 91 TASLEV 96
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 601 PEVEWFYNGKKL-PHGHRYRTFHDF--GIVILDILYCYEENSGVYECRATNKYGSDVTKA 657
P V+W+ GK++ G +YR +F G L I ++++ VY+ RATN+ GS A
Sbjct: 34 PIVKWYRQGKEIIADGLKYR-IQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 92
Query: 658 SLKC 661
SL+
Sbjct: 93 SLEV 96
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN-KWG-QAEIS 290
+ + V + +NG I S R++T + L+I D G Y + K G Q +
Sbjct: 136 EDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD 195
Query: 291 VNLECVDKSKGQPPKFT-------SHIKSLEGLKD------GDSAHFECTLTPVNDPELK 337
++ + D++ + + + + L GL D G + + C + DP +
Sbjct: 196 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW--GDPPPE 253
Query: 338 VEWFHNGKPIFHKNRVKMVSDFGFVV-MDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396
V W N K + + + + G I V + DSG+Y NKYG + + T+
Sbjct: 254 VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Query: 397 F 397
F
Sbjct: 314 F 314
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPI-FHKNRVKMVSD-FGFVVMDIAYVQSHDSG 375
+GDS EC ++ + P K+ W N + + F+ +R+ + D G V + I V D+G
Sbjct: 29 EGDSVKLECQISAIPPP--KLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAG 86
Query: 376 EYVCRAWNKYG 386
Y A N+ G
Sbjct: 87 WYTVSAVNEAG 97
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 66 PVFIVPLKPEFK-LGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS-RFKTTAD-FG 122
P+FI KP+ K + E + LE Q+ P K+ W N + ++ + R D G
Sbjct: 16 PMFI--YKPQSKKVLEGDSVKLECQISAIPPP--KLFWKRNNEMVQFNTDRISLYQDNTG 71
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
VTL + +V +D G YT A N AG T +T +
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 237 VEFLYNGKPIEASHRIRTVHAF--GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
V++ GK I A + F G L I +D VY RATN+ G + +LE
Sbjct: 36 VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE 95
Query: 295 CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--- 351
+K PK + ++ L+ G+ + + DP + + G+ + N
Sbjct: 96 VEVPAKIHLPKTLEGMGAVHALR-GEVVSIKIPFSGKPDPVIT---WQKGQDLIDNNGHY 151
Query: 352 RVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGED 388
+V + F +V V+ D+G YV A N++G D
Sbjct: 152 QVIVTRSFTSLVFPNG-VERKDAGFYVVCAKNRFGID 187
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 526 PDLVVEWFYNGKKL-PHGHRYRTFHDF--GIVILDILYCYEENSGVYECRATNKYGSDVT 582
P +V+W+ GK++ G +YR +F G L I ++++ VY+ RATN+ GS
Sbjct: 32 PKPIVKWYRQGKEIIADGLKYR-IQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90
Query: 583 KASLKC 588
ASL+
Sbjct: 91 TASLEV 96
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 601 PEVEWFYNGKKL-PHGHRYRTFHDF--GIVILDILYCYEENSGVYECRATNKYGSDVTKA 657
P V+W+ GK++ G +YR +F G L I ++++ VY+ RATN+ GS A
Sbjct: 34 PIVKWYRQGKEIIADGLKYR-IQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 92
Query: 658 SLKC 661
SL+
Sbjct: 93 SLEV 96
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 237 VEFLYNGKPIEASHRIRTVHAF--GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
V++ GK I A + F G L I +D VY RATN+ G + +LE
Sbjct: 34 VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE 93
Query: 295 CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--- 351
+K PK + ++ L+ G+ + + DP + + G+ + N
Sbjct: 94 VEVPAKIHLPKTLEGMGAVHALR-GEVVSIKIPFSGKPDPVIT---WQKGQDLIDNNGHY 149
Query: 352 RVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGED 388
+V + F +V V+ D+G YV A N++G D
Sbjct: 150 QVIVTRSFTSLVFPNG-VERKDAGFYVVCAKNRFGID 185
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 526 PDLVVEWFYNGKKL-PHGHRYRTFHDF--GIVILDILYCYEENSGVYECRATNKYGSDVT 582
P +V+W+ GK++ G +YR +F G L I ++++ VY+ RATN+ GS
Sbjct: 30 PKPIVKWYRQGKEIIADGLKYR-IQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 88
Query: 583 KASLKC 588
ASL+
Sbjct: 89 TASLEV 94
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 601 PEVEWFYNGKKL-PHGHRYRTFHDF--GIVILDILYCYEENSGVYECRATNKYGSDVTKA 657
P V+W+ GK++ G +YR +F G L I ++++ VY+ RATN+ GS A
Sbjct: 32 PIVKWYRQGKEIIADGLKYR-IQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 90
Query: 658 SLKC 661
SL+
Sbjct: 91 SLEV 94
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 271 EDTGVYTCRATNKW-GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT 329
+++G+YTC+A N G + +V V +P +++ K +E D D+ F C
Sbjct: 436 KNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVE---DKDAVAFTCEPE 492
Query: 330 PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC 379
N L W+ NG+ + R+++ + G + + V +D+ YVC
Sbjct: 493 AQNTTYL---WWVNGQSLPVSPRLQLSN--GNRTLTLFNVTRNDARAYVC 537
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Query: 47 ALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-N 105
L G+Y + T PV + P + + E L+ + + W+ N
Sbjct: 294 GLKGRYIGELDQSHFTCYAPVIVEP-PTDLNVTEGMAAELKCRTGTSMT---SVNWLTPN 349
Query: 106 GKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTK 161
G + GS + TL+ T V +D G YTC N AG T S T+ TK
Sbjct: 350 GTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVGTK 405
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 214 NLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPI-EASHRIRTVHAFGMVVLEILGTKIE 271
N++EG A + G +V +L NG + S+R+R + L ++
Sbjct: 323 NVTEGMAAELKCR---TGTSMTSVNWLTPNGTLMTHGSYRVR-ISVLHDGTLNFTNVTVQ 378
Query: 272 DTGVYTCRATNKWGQAEISVNLE 294
DTG YTC TN G S L
Sbjct: 379 DTGQYTCMVTNSAGNTTASATLN 401
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPI-EASHRIRTVHAFGMVVLEILGTKIE 760
N++EG A + G +V +L NG + S+R+R + L ++
Sbjct: 323 NVTEGMAAELKCR---TGTSMTSVNWLTPNGTLMTHGSYRVR-ISVLHDGTLNFTNVTVQ 378
Query: 761 DTGVYTCRATNKWGQAEISVNLE 783
DTG YTC TN G S L
Sbjct: 379 DTGQYTCMVTNSAGNTTASATLN 401
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 584 ASLKCVSKTNLILESQLPEVEWFY-NGKKLPHGH---RYRTFHDFGIVILDILYCYEENS 639
A LKC + T++ V W NG + HG R HD + ++ +++
Sbjct: 330 AELKCRTGTSMT------SVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTV---QDT 380
Query: 640 GVYECRATNKYGSDVTKASLKCVSK 664
G Y C TN G+ A+L +K
Sbjct: 381 GQYTCMVTNSAGNTTASATLNVGTK 405
>pdb|3HOS|A Chain A, Crystal Structure Of The Mariner Mos1 Paired End Complex
With Mg
pdb|3HOS|B Chain B, Crystal Structure Of The Mariner Mos1 Paired End Complex
With Mg
pdb|3HOT|A Chain A, Crystal Structure Of The Mos1 Mariner Paired End Complex
With Mn
pdb|3HOT|B Chain B, Crystal Structure Of The Mos1 Mariner Paired End Complex
With Mn
Length = 345
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 225 ASLIPVGDQTMTVE-FLYNGKPIEA-SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 282
+S +P +QT TV F ++ K A SHR+ V AFG V V TC
Sbjct: 2 SSFVPNKEQTRTVLIFCFHLKKTAAESHRM-LVEAFGEQV----------PTVKTC---E 47
Query: 283 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT 329
+W Q S + + DK G+PPK + L+ L D D A + L
Sbjct: 48 RWFQRFKSGDFDVDDKEHGKPPKRYEDAE-LQALLDEDDAQTQKQLA 93
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 48 LAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNL-KIEWIF-N 105
L G+Y + T PV + P + + E + A+++ + +L + WI N
Sbjct: 324 LKGRYIGELDQNYFTCYAPVIVEP-PADLNVTEG----MAAELKCRASTSLTSVSWITPN 378
Query: 106 GKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
G + G+ A TL+ T V +D G+YTC N G T S T+
Sbjct: 379 GTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
>pdb|4ELK|B Chain B, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELK|D Chain D, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELM|F Chain F, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
pdb|4ELM|H Chain H, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
Length = 244
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 230 VGDQTMTVEFLYNGKPIEASHRIRTVHAF-----GMVVLEILGTKIEDTGVYTCRATNKW 284
+G Q + YNGK +E S + + L+I T +ED+ VY C A++ W
Sbjct: 40 LGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFC-ASSFW 98
Query: 285 GQ---------AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE 335
G ++V LE D PPK + S + A C T
Sbjct: 99 GAYAEQFFGPGTRLTV-LE--DLRNVTPPKVSLFEPSKAEISHTQKATLVCLATGFYPDH 155
Query: 336 LKVEWFHNGKPI 347
+++ W+ NGK +
Sbjct: 156 VELSWWVNGKEV 167
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIF--HKNRVKMV 356
S+G PPK + + S + +G C T +P +V W G+ I + R +
Sbjct: 3 SRGIPPKIEA-LPSDISIDEGKVLTVACAFT--GEPTPEVTWSCGGRKIHSQEQGRFHIE 59
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + I VQ D G Y N++G D I
Sbjct: 60 NTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 97
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFH---DFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 657
PEV W G+K+ H FH + L I+ +++ G+Y N++GSD
Sbjct: 37 PEVTWSCGGRKI-HSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATV 95
Query: 658 SL 659
++
Sbjct: 96 NI 97
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 39/173 (22%)
Query: 41 VQEVEHALAGKYQRQPSGPEETFA--KPV--FIVPLKP-EFKLGEAQPLHLEAQVEPKND 95
+Q+V+ A G Y + E+ KPV +++P +P + ++ + ++ +
Sbjct: 88 LQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEE 147
Query: 96 PNL-KIEWIFN-------------------GKPLELGSRFKTTADF-GFVT-----LDLT 129
+ K+ W+F+ GK LG RF+ D G ++ + L
Sbjct: 148 KRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLG-RFRNRVDLTGDISRNDGSIKLQ 206
Query: 130 EVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHP-----KGEEGL 177
V + DQGIYTC + G+ + TI + +RT P KG++G+
Sbjct: 207 TVKESDQGIYTCSIY--VGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQGI 257
>pdb|3SGD|H Chain H, Crystal Structure Of The Mouse Mab 17.2
pdb|3SGD|J Chain J, Crystal Structure Of The Mouse Mab 17.2
pdb|3SGE|H Chain H, Crystal Structure Of Mab 17.2 In Complex With R13 Peptide
pdb|3SGE|J Chain J, Crystal Structure Of Mab 17.2 In Complex With R13 Peptide
Length = 217
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 260 MVVLEILGTKIEDTGVYTC-RATNKWGQAEISVNLECVDKSKGQPP 304
M+ L++ K EDT +Y C R T WGQ L V +K PP
Sbjct: 80 MLYLQMNNLKTEDTAMYYCVRGTTYWGQG----TLVTVSAAKTTPP 121
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR-YRTFHDFGIVILDILYCYEENSGV 568
+G AHF R+ V PD EW+ NG K+ R Y + + + L I E+S
Sbjct: 19 QGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSAS 76
Query: 569 YECRATNKYGSDVTKASLKCVSK 591
+A N G + A L +K
Sbjct: 77 IMVKAINIAGETSSHAFLLVQAK 99
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV-SDFG 360
+ PK I+S + + G AHF + DPE EW+ NG I +R+ +
Sbjct: 4 EAPKIFERIQS-QTVGQGSDAHFRVRVVGKPDPEC--EWYKNGVKIERSDRIYWYWPEDN 60
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRA 392
+ I V DS + +A N GE + A
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHA 92
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI-- 252
+S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 2 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 61
Query: 253 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
R H + +++ ++ + D G YTC N++G + +L+ V
Sbjct: 62 YKVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVV 104
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 685 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI-- 741
+S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 2 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 61
Query: 742 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785
R H + +++ ++ + D G YTC N++G + +L+ V
Sbjct: 62 YKVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVV 104
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 600 LPEVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
+P + W NGK+ HR Y+ + +I++ + + G Y C N+YGS
Sbjct: 41 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV--VPSDKGNYTCVVENEYGS 94
>pdb|2CR6|A Chain A, Solution Structure Of The Ig Domain (2998-3100) Of Human
Obscurin
Length = 115
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 316 LKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSD--FGFVVMDIAYVQSH 372
+++G SA F C ++P N +P V WF + P+ H N + + G+ V+ + +
Sbjct: 25 VQEGSSATFRCRISPANYEP---VHWFLDKTPL-HANELNEIDAQPGGYHVLTLRQLALK 80
Query: 373 DSGEYVCRAWNKYGEDFTRATIK--CFGKGG 401
DSG A ++ R T K F + G
Sbjct: 81 DSGTIYFEAGDQRASAALRVTEKPSVFSRSG 111
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI-- 252
+S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 3 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 62
Query: 253 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
R H + +++ ++ + D G YTC N++G + +L+ V
Sbjct: 63 YKVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVV 105
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 685 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI-- 741
+S + R P +T+ + L A+ P G M T+ +L NGK + HRI
Sbjct: 3 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 62
Query: 742 ---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785
R H + +++ ++ + D G YTC N++G + +L+ V
Sbjct: 63 YKVRNQH-WSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVV 105
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 600 LPEVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
+P + W NGK+ HR Y+ + +I++ + + G Y C N+YGS
Sbjct: 42 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV--VPSDKGNYTCVVENEYGS 95
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
+G + F C DP + W K + ++ F +++ Y Q D+G Y
Sbjct: 399 EGHTVQFVCRAD--GDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTY 456
Query: 378 VCRAWNKYGED 388
+C A N G D
Sbjct: 457 LCIAANAGGND 467
>pdb|4G6F|H Chain H, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|B Chain B, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 236
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 245 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 284
P+E I +++ + LE+ ++ED+G+Y C T K+
Sbjct: 65 PVEGRFTISRLNSINFLYLEMNNLRMEDSGLYFCARTGKY 104
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 734 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 773
P+E I +++ + LE+ ++ED+G+Y C T K+
Sbjct: 65 PVEGRFTISRLNSINFLYLEMNNLRMEDSGLYFCARTGKY 104
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 94 NDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145
ND I+W+FN + L+L R + + + +D + D G Y C N
Sbjct: 135 NDIGANIQWLFNSQSLQLTERMTLSQNNSILRID--PIKREDAGEYQCEISN 184
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 94 NDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145
ND I+W+FN + L+L R + + + +D + D G Y C N
Sbjct: 135 NDIGANIQWLFNSQSLQLTERMTLSQNNSILRID--PIKREDAGEYQCEISN 184
>pdb|4EI5|D Chain D, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
pdb|4EI5|H Chain H, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
pdb|4EI6|B Chain B, Structure Of Xv19 Valpha1-Vbeta16 Type-Ii Natural Killer T
Cell Receptor
pdb|4EI6|D Chain D, Structure Of Xv19 Valpha1-Vbeta16 Type-Ii Natural Killer T
Cell Receptor
Length = 245
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 230 VGDQTMTVEFLYNGKPIEASHRIRTVHAF-----GMVVLEILGTKIEDTGVYTCRATNKW 284
+G Q + YNGK +E S + + L+I T +ED+ VY C A++ W
Sbjct: 40 LGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFC-ASSFW 98
Query: 285 GQ-AE----ISVNLECVDKSKGQ-PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKV 338
G AE L ++ K PP+ S + A C T +++
Sbjct: 99 GAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 158
Query: 339 EWFHNGKPI 347
W+ NGK +
Sbjct: 159 SWWVNGKEV 167
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
+ P KFT +++ E +G +A C L+ + VEW+ + + +R + D
Sbjct: 16 RALPIKFTEGLRNEEA-TEGATAVLRCELSKM----APVEWWKGHETLRDGDRHSLRQDG 70
Query: 360 GFVVMDIAYVQSHDSGEYVC 379
+ I + + D+GEY+C
Sbjct: 71 ARCELQIRGLVAEDAGEYLC 90
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 331 VNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381
++ P V W+ +G+ + + RV++ V+ + +S D+GEY+C A
Sbjct: 20 LSGPGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA 70
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 241 YN--GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNLE 294
YN G+ I ++ R+ L I IED G+Y C+AT+ GQ E +V LE
Sbjct: 34 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 90
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 730 YN--GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNLE 783
YN G+ I ++ R+ L I IED G+Y C+AT+ GQ E +V LE
Sbjct: 34 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 90
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
+G+SA F C +P V W G+ + R ++ + +I+ VQ+ D G Y
Sbjct: 28 EGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNY 85
Query: 378 VCRAWNKYGE 387
N G+
Sbjct: 86 SVVVENSEGK 95
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 21/124 (16%)
Query: 270 IEDTGVYTCRATN-------KWGQAEISVNLECVDKSKGQPPKFTSHI---KSLEGLKDG 319
++D G Y CR N +W Q ++ E +S + I + + L G
Sbjct: 74 VKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPG 133
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC 379
+ +C V P +WF N P+ H+ + + + YV G Y C
Sbjct: 134 STLVLQC--VAVGSPIPHYQWFKNELPLTHETKKLYM---------VPYVDLEHQGTYWC 182
Query: 380 RAWN 383
+N
Sbjct: 183 HVYN 186
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFH---DFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 657
PEV W G+K+ H FH + L I+ +++ G+Y N++GSD
Sbjct: 35 PEVTWSCGGRKI-HSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATV 93
Query: 658 SL 659
++
Sbjct: 94 NI 95
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 230 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 289
GD + +L G T+ G L+I +I DTG YTC AT+ G+
Sbjct: 33 TGDPLPVISWLKEGFTFPGRDPRATIQEQG--TLQIKNLRISDTGTYTCVATSSSGETSW 90
Query: 290 SVNLECVDK 298
S L+ +
Sbjct: 91 SAVLDVTES 99
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 719 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
GD + +L G T+ G L+I +I DTG YTC AT+ G+
Sbjct: 33 TGDPLPVISWLKEGFTFPGRDPRATIQEQG--TLQIKNLRISDTGTYTCVATSSSGETSW 90
Query: 779 SVNLE 783
S L+
Sbjct: 91 SAVLD 95
>pdb|2IIR|A Chain A, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|B Chain B, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|C Chain C, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|D Chain D, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|E Chain E, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|F Chain F, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|G Chain G, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|H Chain H, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|I Chain I, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|J Chain J, Acetate Kinase From A Hypothermophile Thermotoga Maritima
Length = 403
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 264 EILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
EILG K+E+ + TC N A + +CVD S G P LEGL G
Sbjct: 192 EILGKKLEELKIITCHIGNGASVAAVKYG-KCVDTSMGFTP--------LEGLVMG 238
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 73/194 (37%), Gaps = 41/194 (21%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTA---DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151
DP ++ W GK + RF+T G V RD+ IY C A N GE
Sbjct: 33 DPKPRVTWNKKGKKVN-SQRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQNPHGE-- 89
Query: 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
+ K +++ Q P G ++ L+ R + A + + G P
Sbjct: 90 ----VTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNP--------- 136
Query: 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 271
+ EI F+ +PV P ++ RI+ + + G L+I ++
Sbjct: 137 -----DPEITWFK-DFLPV-------------DPSTSNGRIKQLRSGG---LQIESSEET 174
Query: 272 DTGVYTCRATNKWG 285
D G Y C A+N G
Sbjct: 175 DQGKYECVASNSAG 188
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 229 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 282
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 31 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 86
Query: 283 KWGQAEISVNLECV 296
++G + +L+ V
Sbjct: 87 EYGSINHTYHLDVV 100
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 718 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 771
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 31 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 86
Query: 772 KWGQAEISVNLECV 785
++G + +L+ V
Sbjct: 87 EYGSINHTYHLDVV 100
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 600 LPEVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
+P + W NGK+ HR Y+ + +I++ + + G Y C N+YGS
Sbjct: 37 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV--VPSDKGNYTCVVENEYGS 90
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
+G+SA F C +P V W G+ + R ++ + +I+ VQ+ D G Y
Sbjct: 22 EGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNY 79
Query: 378 VCRAWNKYGE 387
N G+
Sbjct: 80 SVVVENSEGK 89
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD-KSKGQPPKFT 307
VL+I K+ DTG YTC A+ G+A S +E + QPP+ T
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPT 109
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 238 EFLYNGKPI-EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
E++++ K + E R+R + + G + ED GVYT N G+ ++++ ++ +
Sbjct: 79 EWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
Query: 297 D 297
D
Sbjct: 139 D 139
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 101 EWIFNGKPL---ELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
EW+F+ K L E R +TT D T++ E D+G+YT N GE + T+
Sbjct: 79 EWVFDKKLLCETEGRVRVETTKDRSIFTVEGAE--KEDEGVYTVTVKNPVGEDQVNLTV 135
>pdb|2D4D|A Chain A, The Crystal Structure Of Human Beta2-Microglobulin, L39w
W60f W95f Mutant
Length = 100
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 310 IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI--FHKNRVKMVSDFGFVVMDIA 367
+ S ++G S C ++ + +++V+W NG+ I + + DF F ++
Sbjct: 10 VYSRHPAENGKSNFLNCYVSGFHPSDIEVDWLKNGERIEKVEHSDLSFSKDFSFYLLYYT 69
Query: 368 YVQSHDSGEYVCRA 381
+ EY CR
Sbjct: 70 EFTPTEKDEYACRV 83
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVIL 556
+F + D+ L EG +A L+ V P V+W Y L G +Y + ++ L
Sbjct: 10 RFQEALKDLEVL-EGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDKYSLRQEGAMLEL 65
Query: 557 DILYCYEENSGVYECRATNKYGSDVTKASL 586
+ ++SG Y C +G T A+L
Sbjct: 66 VVRNLRPQDSGRYSC----SFGDQTTSATL 91
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEW--FHNGKPIFHKNRVKMVSDF 359
+P T + + ++ G F CT P + W HNGK DF
Sbjct: 8 KPIMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGK------LPSRAMDF 60
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + I VQ D+G YVC N + D AT+
Sbjct: 61 NGI-LTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
>pdb|3SQO|H Chain H, Pcsk9 J16 Fab Complex
Length = 219
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 675 ELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP 734
E+++ A V S FTS + H + G+ + + P G +T YN K
Sbjct: 10 EVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGEISPFGGRTN-----YNEK- 63
Query: 735 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR------ATNKWGQA 776
++ + + V +E+ + EDT VY C A++ WGQ
Sbjct: 64 FKSRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARERPLYASDLWGQG 111
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
+G PP F + + + G A +C + + +P V W G+ + R+ +D
Sbjct: 11 QGSPPCFLRRPRPVR-VVSGAEAELKCVV--LGEPPPVVVWEKGGQQLAASERLSFPADG 67
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWN 383
+ + D+G YVCRA N
Sbjct: 68 AEHGLLLTAALPTDAGVYVCRARN 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,749,069
Number of Sequences: 62578
Number of extensions: 1083495
Number of successful extensions: 4637
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 3862
Number of HSP's gapped (non-prelim): 718
length of query: 805
length of database: 14,973,337
effective HSP length: 107
effective length of query: 698
effective length of database: 8,277,491
effective search space: 5777688718
effective search space used: 5777688718
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)