Query psy2166
Match_columns 805
No_of_seqs 292 out of 2891
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 18:00:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 2.9E-60 6.2E-65 516.5 53.4 539 66-791 40-618 (1051)
2 KOG3513|consensus 100.0 8.9E-53 1.9E-57 458.1 51.9 496 14-665 59-615 (1051)
3 KOG4221|consensus 100.0 1.8E-43 3.8E-48 381.9 42.1 534 54-786 29-610 (1381)
4 KOG4222|consensus 100.0 2.3E-42 5E-47 371.3 24.5 450 196-787 25-511 (1281)
5 KOG4221|consensus 100.0 1.3E-38 2.9E-43 344.4 37.1 478 35-663 94-610 (1381)
6 KOG4222|consensus 100.0 6.5E-38 1.4E-42 337.2 31.6 441 62-665 28-512 (1281)
7 KOG4194|consensus 100.0 9.3E-28 2E-32 242.5 19.9 283 199-593 500-800 (873)
8 KOG4194|consensus 100.0 2.9E-27 6.3E-32 238.9 20.5 284 63-401 501-800 (873)
9 PHA02785 IL-beta-binding prote 100.0 3.9E-26 8.4E-31 234.3 29.0 233 508-778 38-320 (326)
10 PHA02785 IL-beta-binding prote 99.9 2.7E-25 5.9E-30 228.0 29.5 257 215-582 38-320 (326)
11 KOG3515|consensus 99.9 1.9E-25 4.2E-30 238.9 24.6 525 75-784 16-589 (741)
12 KOG3515|consensus 99.9 2.4E-21 5.2E-26 207.7 21.7 570 38-783 60-687 (741)
13 PHA02826 IL-1 receptor-like pr 99.8 3.2E-18 6.9E-23 164.0 19.1 160 75-284 31-211 (227)
14 cd05762 Ig8_MLCK Eighth immuno 99.8 1.1E-18 2.4E-23 144.5 13.0 97 692-791 1-97 (98)
15 PHA02826 IL-1 receptor-like pr 99.8 2.3E-17 5E-22 158.2 19.8 139 600-774 62-212 (227)
16 cd05851 Ig3_Contactin-1 Third 99.7 6.6E-17 1.4E-21 131.3 10.1 88 691-785 1-88 (88)
17 cd05747 Ig5_Titin_like M5, fif 99.7 2.3E-16 5E-21 129.9 12.3 91 690-783 2-92 (92)
18 cd05762 Ig8_MLCK Eighth immuno 99.7 3.1E-16 6.7E-21 129.9 13.0 95 496-593 1-95 (98)
19 PF07679 I-set: Immunoglobulin 99.7 4.2E-16 9.1E-21 128.6 12.2 90 692-784 1-90 (90)
20 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 4.8E-16 1E-20 125.3 11.7 80 703-784 6-86 (86)
21 cd05892 Ig_Myotilin_C C-termin 99.7 3.7E-16 8E-21 121.6 10.4 73 710-784 1-75 (75)
22 cd05737 Ig_Myomesin_like_C C-t 99.7 5.3E-16 1.1E-20 127.7 11.8 80 703-784 12-92 (92)
23 cd04975 Ig4_SCFR_like Fourth i 99.7 6.1E-16 1.3E-20 128.0 10.6 82 703-786 14-101 (101)
24 cd05852 Ig5_Contactin-1 Fifth 99.6 8.7E-16 1.9E-20 119.2 9.1 73 707-784 1-73 (73)
25 cd05893 Ig_Palladin_C C-termin 99.6 1.4E-15 3E-20 118.6 10.1 73 710-784 1-75 (75)
26 cd04972 Ig_TrkABC_d4 Fourth do 99.6 2.8E-15 6.1E-20 122.9 12.0 85 697-784 6-90 (90)
27 cd05745 Ig3_Peroxidasin Third 99.6 1.2E-15 2.5E-20 119.9 8.7 74 706-784 1-74 (74)
28 cd05730 Ig3_NCAM-1_like Third 99.6 2.7E-15 5.9E-20 124.7 11.2 80 703-786 14-94 (95)
29 cd05870 Ig5_NCAM-2 Fifth immun 99.6 3.1E-15 6.7E-20 124.8 11.3 90 691-784 2-98 (98)
30 cd05869 Ig5_NCAM-1 Fifth immun 99.6 3.8E-15 8.1E-20 124.0 11.7 91 691-784 2-97 (97)
31 cd05748 Ig_Titin_like Immunogl 99.6 4.3E-15 9.3E-20 116.9 11.3 74 709-784 1-74 (74)
32 cd05735 Ig8_DSCAM Eight immuno 99.6 7.4E-15 1.6E-19 119.1 12.4 80 707-788 1-85 (88)
33 cd05859 Ig4_PDGFR-alpha Fourth 99.6 3.7E-15 8.1E-20 123.6 10.6 82 703-786 14-101 (101)
34 cd05728 Ig4_Contactin-2-like F 99.6 3.8E-15 8.2E-20 120.4 10.0 82 696-784 4-85 (85)
35 cd05744 Ig_Myotilin_C_like Imm 99.6 7.2E-15 1.6E-19 115.2 10.9 73 710-784 1-75 (75)
36 cd05865 Ig1_NCAM-1 First immun 99.6 9.3E-15 2E-19 120.0 11.9 85 697-784 6-95 (96)
37 cd05866 Ig1_NCAM-2 First immun 99.6 1.1E-14 2.3E-19 118.2 12.0 84 697-784 6-91 (92)
38 cd05737 Ig_Myomesin_like_C C-t 99.6 1E-14 2.2E-19 120.0 12.1 89 498-588 3-92 (92)
39 cd04968 Ig3_Contactin_like Thi 99.6 7.1E-15 1.5E-19 120.1 11.0 88 691-785 1-88 (88)
40 cd05863 Ig2_VEGFR-3 Second imm 99.6 4E-15 8.6E-20 112.1 8.6 67 710-786 1-67 (67)
41 cd05723 Ig4_Neogenin Fourth im 99.6 7.4E-15 1.6E-19 114.0 10.4 71 709-784 1-71 (71)
42 cd05732 Ig5_NCAM-1_like Fifth 99.6 6.6E-15 1.4E-19 122.9 10.9 90 691-784 2-96 (96)
43 cd05743 Ig_Perlecan_D2_like Im 99.6 9.7E-15 2.1E-19 115.9 10.8 77 707-785 1-77 (78)
44 cd05867 Ig4_L1-CAM_like Fourth 99.6 1.6E-14 3.5E-19 114.0 11.4 75 707-785 1-76 (76)
45 cd05747 Ig5_Titin_like M5, fif 99.6 2.4E-14 5.1E-19 117.9 12.3 91 494-587 2-92 (92)
46 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 3E-14 6.5E-19 114.9 12.3 81 506-588 5-86 (86)
47 cd05851 Ig3_Contactin-1 Third 99.6 2.2E-14 4.8E-19 116.5 11.1 88 65-159 1-88 (88)
48 cd04975 Ig4_SCFR_like Fourth i 99.6 2.9E-14 6.3E-19 118.0 11.8 84 505-590 12-101 (101)
49 cd05868 Ig4_NrCAM Fourth immun 99.6 1.8E-14 3.9E-19 113.3 10.1 75 707-785 1-76 (76)
50 PF07679 I-set: Immunoglobulin 99.6 3.3E-14 7.1E-19 117.3 11.8 90 496-588 1-90 (90)
51 cd07693 Ig1_Robo First immunog 99.6 3.1E-14 6.8E-19 120.3 11.8 91 691-784 1-99 (100)
52 cd05891 Ig_M-protein_C C-termi 99.6 3.1E-14 6.6E-19 116.8 11.2 80 703-784 12-92 (92)
53 cd05857 Ig2_FGFR Second immuno 99.6 3.6E-14 7.7E-19 115.4 11.5 80 703-784 5-85 (85)
54 cd04969 Ig5_Contactin_like Fif 99.6 2E-14 4.4E-19 112.5 9.6 73 707-784 1-73 (73)
55 cd05892 Ig_Myotilin_C C-termin 99.6 3.2E-14 7E-19 110.7 10.5 73 514-588 1-75 (75)
56 cd05848 Ig1_Contactin-5 First 99.6 4.9E-14 1.1E-18 116.0 12.1 82 692-778 2-87 (94)
57 cd05853 Ig6_Contactin-4 Sixth 99.6 2.3E-14 5.1E-19 113.3 9.7 81 708-788 1-85 (85)
58 cd05854 Ig6_Contactin-2 Sixth 99.6 5.2E-14 1.1E-18 113.2 11.6 78 708-787 1-84 (85)
59 cd05855 Ig_TrkB_d5 Fifth domai 99.6 2.8E-14 6E-19 111.1 9.5 71 711-783 2-77 (79)
60 cd05740 Ig_CEACAM_D4 Fourth im 99.5 6.1E-14 1.3E-18 114.2 11.9 86 692-784 2-90 (91)
61 cd05864 Ig2_VEGFR-2 Second imm 99.5 2.2E-14 4.8E-19 109.7 8.5 70 710-786 1-70 (70)
62 cd05852 Ig5_Contactin-1 Fifth 99.5 2.8E-14 6E-19 110.7 9.1 73 511-588 1-73 (73)
63 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 5.6E-14 1.2E-18 111.3 10.5 71 711-783 2-79 (81)
64 cd04978 Ig4_L1-NrCAM_like Four 99.5 3.8E-14 8.3E-19 112.4 9.6 75 707-785 1-76 (76)
65 cd05850 Ig1_Contactin-2 First 99.5 1.3E-13 2.7E-18 113.6 12.9 86 692-782 2-92 (94)
66 cd05745 Ig3_Peroxidasin Third 99.5 3.7E-14 8E-19 111.3 8.8 74 510-588 1-74 (74)
67 cd04976 Ig2_VEGFR Second immun 99.5 3.8E-14 8.1E-19 109.7 8.6 71 710-786 1-71 (71)
68 cd05893 Ig_Palladin_C C-termin 99.5 7.5E-14 1.6E-18 108.9 10.2 73 514-588 1-75 (75)
69 cd05746 Ig4_Peroxidasin Fourth 99.5 3.6E-14 7.8E-19 109.5 7.9 69 710-783 1-69 (69)
70 cd05760 Ig2_PTK7 Second immuno 99.5 8.1E-14 1.8E-18 110.1 10.0 72 710-785 1-73 (77)
71 cd05773 Ig8_hNephrin_like Eigh 99.5 1.1E-13 2.3E-18 117.3 11.3 97 690-788 3-108 (109)
72 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 9.6E-14 2.1E-18 106.4 9.8 69 707-783 1-69 (69)
73 cd05758 Ig5_KIRREL3-like Fifth 99.5 1.9E-13 4.2E-18 114.0 12.1 88 691-782 2-97 (98)
74 cd04973 Ig1_FGFR First immunog 99.5 8.9E-14 1.9E-18 110.5 9.6 75 703-784 5-79 (79)
75 cd05748 Ig_Titin_like Immunogl 99.5 1.8E-13 4E-18 107.6 11.4 74 513-588 1-74 (74)
76 cd04972 Ig_TrkABC_d4 Fourth do 99.5 2.3E-13 4.9E-18 111.6 12.3 80 507-588 11-90 (90)
77 cd05849 Ig1_Contactin-1 First 99.5 2E-13 4.3E-18 111.7 11.4 85 691-782 1-91 (93)
78 cd05876 Ig3_L1-CAM Third immun 99.5 9.8E-14 2.1E-18 107.7 9.1 70 710-784 1-70 (71)
79 cd05869 Ig5_NCAM-1 Fifth immun 99.5 2.8E-13 6E-18 112.7 12.0 91 495-588 2-97 (97)
80 cd05723 Ig4_Neogenin Fourth im 99.5 2.5E-13 5.4E-18 105.4 10.6 71 513-588 1-71 (71)
81 cd05763 Ig_1 Subgroup of the i 99.5 1.2E-13 2.5E-18 108.9 8.7 72 710-785 1-75 (75)
82 cd05744 Ig_Myotilin_C_like Imm 99.5 3.3E-13 7.1E-18 105.8 11.0 73 514-588 1-75 (75)
83 cd05865 Ig1_NCAM-1 First immun 99.5 4.4E-13 9.4E-18 110.1 12.1 80 507-588 11-95 (96)
84 cd05859 Ig4_PDGFR-alpha Fourth 99.5 2.6E-13 5.6E-18 112.6 10.9 82 506-589 13-100 (101)
85 cd05735 Ig8_DSCAM Eight immuno 99.5 4.9E-13 1.1E-17 108.5 12.2 81 511-593 1-86 (88)
86 cd04970 Ig6_Contactin_like Six 99.5 2.9E-13 6.3E-18 109.6 10.5 78 708-787 1-84 (85)
87 cd05730 Ig3_NCAM-1_like Third 99.5 3.9E-13 8.6E-18 111.6 11.5 80 507-590 14-94 (95)
88 cd05743 Ig_Perlecan_D2_like Im 99.5 4E-13 8.6E-18 106.6 11.0 76 511-588 1-76 (78)
89 cd05870 Ig5_NCAM-2 Fifth immun 99.5 4.3E-13 9.2E-18 111.9 11.6 90 495-588 2-98 (98)
90 cd05728 Ig4_Contactin-2-like F 99.5 2.9E-13 6.3E-18 109.4 10.2 81 501-588 5-85 (85)
91 cd05736 Ig2_Follistatin_like S 99.5 2.5E-13 5.5E-18 107.4 9.7 74 710-785 1-74 (76)
92 cd04977 Ig1_NCAM-1_like First 99.5 4.4E-13 9.5E-18 109.9 11.3 83 698-784 7-92 (92)
93 cd05863 Ig2_VEGFR-3 Second imm 99.5 2.4E-13 5.2E-18 102.4 8.8 66 514-589 1-66 (67)
94 cd05764 Ig_2 Subgroup of the i 99.5 2.9E-13 6.3E-18 106.5 9.5 73 707-784 1-74 (74)
95 cd05725 Ig3_Robo Third immunog 99.5 2.7E-13 5.9E-18 104.8 9.1 69 710-784 1-69 (69)
96 cd05854 Ig6_Contactin-2 Sixth 99.5 7.1E-13 1.5E-17 106.6 11.8 81 512-592 1-85 (85)
97 cd05866 Ig1_NCAM-2 First immun 99.5 8E-13 1.7E-17 107.3 12.1 84 501-588 6-91 (92)
98 cd05726 Ig4_Robo Fhird immunog 99.5 2.8E-13 6.1E-18 111.0 9.6 76 707-787 1-84 (90)
99 cd05858 Ig3_FGFR-2 Third immun 99.5 3.4E-13 7.3E-18 110.4 10.1 76 707-784 1-89 (90)
100 cd05856 Ig2_FGFRL1-like Second 99.5 2E-13 4.4E-18 110.3 8.7 78 703-784 5-82 (82)
101 cd05891 Ig_M-protein_C C-termi 99.5 6.7E-13 1.5E-17 108.8 11.7 85 502-588 7-92 (92)
102 cd04974 Ig3_FGFR Third immunog 99.5 1.7E-13 3.7E-18 112.0 8.1 76 707-784 1-89 (90)
103 cd04968 Ig3_Contactin_like Thi 99.5 6E-13 1.3E-17 108.7 11.3 87 67-159 2-88 (88)
104 cd05724 Ig2_Robo Second immuno 99.5 3.6E-13 7.8E-18 109.8 10.0 81 698-784 3-86 (86)
105 cd05853 Ig6_Contactin-4 Sixth 99.5 4.2E-13 9E-18 106.3 9.7 81 512-592 1-85 (85)
106 cd05867 Ig4_L1-CAM_like Fourth 99.5 9.1E-13 2E-17 104.0 11.4 75 511-589 1-76 (76)
107 cd04969 Ig5_Contactin_like Fif 99.5 4.8E-13 1E-17 104.7 9.6 73 511-588 1-73 (73)
108 cd05732 Ig5_NCAM-1_like Fifth 99.4 7.3E-13 1.6E-17 110.5 11.2 90 495-588 2-96 (96)
109 cd05749 Ig2_Tyro3_like Second 99.4 3.5E-13 7.7E-18 106.4 8.7 76 696-782 3-80 (81)
110 cd05868 Ig4_NrCAM Fourth immun 99.4 6.2E-13 1.4E-17 104.6 10.1 75 511-589 1-76 (76)
111 cd05773 Ig8_hNephrin_like Eigh 99.4 1.2E-12 2.6E-17 110.9 12.3 98 493-592 2-108 (109)
112 cd05722 Ig1_Neogenin First imm 99.4 5.8E-13 1.3E-17 110.5 10.1 84 695-784 3-95 (95)
113 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 4.8E-13 1E-17 104.8 8.9 70 710-784 1-73 (74)
114 cd05731 Ig3_L1-CAM_like Third 99.4 5.6E-13 1.2E-17 104.1 9.0 70 710-784 1-70 (71)
115 cd05750 Ig_Pro_neuregulin Immu 99.4 6.1E-13 1.3E-17 105.2 9.2 71 710-782 1-75 (75)
116 cd05857 Ig2_FGFR Second immuno 99.4 1.7E-12 3.8E-17 105.4 11.7 79 508-588 6-85 (85)
117 cd04973 Ig1_FGFR First immunog 99.4 1.2E-12 2.5E-17 104.0 10.0 78 74-158 2-79 (79)
118 cd07693 Ig1_Robo First immunog 99.4 2.2E-12 4.8E-17 108.9 12.0 91 495-588 1-99 (100)
119 cd04967 Ig1_Contactin First Ig 99.4 2E-12 4.2E-17 106.2 11.0 82 692-778 2-87 (91)
120 cd04978 Ig4_L1-NrCAM_like Four 99.4 1.5E-12 3.2E-17 103.2 9.9 75 511-589 1-76 (76)
121 cd07702 Ig2_VEGFR-1 Second imm 99.4 1.4E-12 3E-17 99.8 9.2 71 710-785 1-71 (72)
122 cd05756 Ig1_IL1R_like First im 99.4 7E-13 1.5E-17 108.5 7.9 78 703-784 10-94 (94)
123 cd05746 Ig4_Peroxidasin Fourth 99.4 8.8E-13 1.9E-17 101.7 7.8 68 514-586 1-68 (69)
124 cd05898 Ig5_KIRREL3 Fifth immu 99.4 4.2E-12 9.1E-17 103.4 11.3 89 691-783 2-98 (98)
125 cd05864 Ig2_VEGFR-2 Second imm 99.4 1.7E-12 3.6E-17 99.3 8.3 69 514-589 1-69 (70)
126 cd05765 Ig_3 Subgroup of the i 99.4 1.9E-12 4.1E-17 104.1 9.1 76 707-784 1-81 (81)
127 cd05848 Ig1_Contactin-5 First 99.4 6.4E-12 1.4E-16 103.4 12.3 83 496-582 2-87 (94)
128 cd04970 Ig6_Contactin_like Six 99.4 4.1E-12 8.8E-17 102.9 10.7 79 512-592 1-85 (85)
129 cd05855 Ig_TrkB_d5 Fifth domai 99.4 3.4E-12 7.4E-17 99.5 9.6 71 515-587 2-77 (79)
130 cd05740 Ig_CEACAM_D4 Fourth im 99.4 7.2E-12 1.6E-16 102.0 11.9 80 73-158 10-90 (91)
131 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 5.6E-12 1.2E-16 99.9 10.8 71 515-587 2-79 (81)
132 cd05733 Ig6_L1-CAM_like Sixth 99.4 2.1E-12 4.6E-17 101.9 8.2 65 710-778 1-71 (77)
133 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 5E-12 1.1E-16 96.9 10.0 68 511-586 1-68 (69)
134 cd05876 Ig3_L1-CAM Third immun 99.4 2.3E-12 5.1E-17 99.9 8.1 71 514-589 1-71 (71)
135 cd04976 Ig2_VEGFR Second immun 99.4 3.6E-12 7.8E-17 98.6 9.0 70 84-159 1-70 (71)
136 cd05760 Ig2_PTK7 Second immuno 99.4 5.2E-12 1.1E-16 99.7 10.0 71 514-588 1-72 (77)
137 cd05771 IgC_Tapasin_R Tapasin- 99.4 2.2E-11 4.9E-16 109.0 15.0 116 628-773 2-131 (139)
138 cd05752 Ig1_FcgammaR_like Frst 99.3 2.1E-12 4.6E-17 101.3 7.0 77 692-784 1-78 (78)
139 cd05850 Ig1_Contactin-2 First 99.3 1.9E-11 4.2E-16 100.6 13.0 84 496-586 2-92 (94)
140 cd05758 Ig5_KIRREL3-like Fifth 99.3 1.2E-11 2.7E-16 103.0 11.9 88 495-586 2-97 (98)
141 cd05764 Ig_2 Subgroup of the i 99.3 7.7E-12 1.7E-16 98.3 9.8 73 511-588 1-74 (74)
142 cd05742 Ig1_VEGFR_like First i 99.3 7.2E-12 1.6E-16 101.2 9.5 76 707-784 1-83 (84)
143 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 6.4E-12 1.4E-16 98.4 8.8 71 514-589 1-74 (74)
144 cd05874 Ig6_NrCAM Sixth immuno 99.3 7.3E-12 1.6E-16 98.5 9.1 66 710-779 1-72 (77)
145 cd05726 Ig4_Robo Fhird immunog 99.3 7.9E-12 1.7E-16 102.4 9.5 77 511-592 1-85 (90)
146 cd05875 Ig6_hNeurofascin_like 99.3 7.2E-12 1.6E-16 98.6 8.9 66 710-779 1-72 (77)
147 cd05849 Ig1_Contactin-1 First 99.3 1.7E-11 3.7E-16 100.3 11.4 85 495-586 1-91 (93)
148 cd05763 Ig_1 Subgroup of the i 99.3 8.4E-12 1.8E-16 98.3 9.2 71 514-588 1-74 (75)
149 cd05895 Ig_Pro_neuregulin-1 Im 99.3 8.5E-12 1.8E-16 98.6 9.3 72 710-782 1-76 (76)
150 cd05736 Ig2_Follistatin_like S 99.3 1.1E-11 2.5E-16 97.9 9.9 74 514-589 1-74 (76)
151 cd05725 Ig3_Robo Third immunog 99.3 7.7E-12 1.7E-16 96.6 8.6 69 514-588 1-69 (69)
152 cd05858 Ig3_FGFR-2 Third immun 99.3 1.3E-11 2.9E-16 101.0 10.2 76 511-588 1-89 (90)
153 cd05724 Ig2_Robo Second immuno 99.3 2.1E-11 4.5E-16 99.4 10.8 79 74-156 4-84 (86)
154 cd04974 Ig3_FGFR Third immunog 99.3 9.1E-12 2E-16 101.8 8.4 77 511-589 1-90 (90)
155 cd04977 Ig1_NCAM-1_like First 99.3 3.2E-11 6.9E-16 98.9 11.5 79 507-588 11-92 (92)
156 cd05729 Ig2_FGFR_like Second i 99.3 2.6E-11 5.7E-16 98.6 11.0 80 703-784 5-85 (85)
157 cd05750 Ig_Pro_neuregulin Immu 99.3 1.5E-11 3.3E-16 97.1 9.2 71 514-585 1-74 (75)
158 cd05856 Ig2_FGFRL1-like Second 99.3 1.4E-11 3.1E-16 99.4 8.8 77 508-588 6-82 (82)
159 cd05722 Ig1_Neogenin First imm 99.3 2.7E-11 5.8E-16 100.5 10.5 83 500-588 4-95 (95)
160 cd05734 Ig7_DSCAM Seventh immu 99.3 1.1E-11 2.4E-16 98.7 7.8 70 710-784 1-79 (79)
161 cd05749 Ig2_Tyro3_like Second 99.3 2.2E-11 4.7E-16 96.2 9.0 70 507-586 9-80 (81)
162 cd07702 Ig2_VEGFR-1 Second imm 99.3 2.2E-11 4.8E-16 93.2 8.7 68 514-587 1-69 (72)
163 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 2.6E-11 5.7E-16 97.3 9.3 76 707-784 1-82 (84)
164 cd05731 Ig3_L1-CAM_like Third 99.3 1.6E-11 3.5E-16 95.7 7.9 70 514-588 1-70 (71)
165 cd07701 Ig1_Necl-3 First (N-te 99.3 3.6E-11 7.9E-16 98.8 10.1 82 699-784 5-95 (95)
166 cd05873 Ig_Sema4D_like Immunog 99.3 4.1E-11 8.9E-16 95.3 9.9 68 698-773 3-71 (87)
167 cd05754 Ig3_Perlecan_like Thir 99.2 3.4E-11 7.4E-16 97.5 9.2 77 698-782 8-84 (85)
168 cd05895 Ig_Pro_neuregulin-1 Im 99.2 4.3E-11 9.4E-16 94.5 9.4 71 514-585 1-75 (76)
169 cd05756 Ig1_IL1R_like First im 99.2 2.1E-11 4.6E-16 99.8 7.2 77 508-588 11-94 (94)
170 cd05765 Ig_3 Subgroup of the i 99.2 4E-11 8.7E-16 96.4 8.8 76 511-588 1-81 (81)
171 cd05742 Ig1_VEGFR_like First i 99.2 5.6E-11 1.2E-15 95.9 9.1 78 511-588 1-83 (84)
172 cd05757 Ig2_IL1R_like Second i 99.2 5.4E-11 1.2E-15 96.6 8.2 80 703-786 6-88 (92)
173 TIGR00864 PCC polycystin catio 99.2 1.6E-05 3.4E-10 98.1 57.1 484 77-786 1522-2040(2740)
174 cd04979 Ig_Semaphorin_C Immuno 99.2 8.9E-11 1.9E-15 96.0 9.2 78 703-785 7-87 (89)
175 cd05882 Ig1_Necl-1 First (N-te 99.2 1.9E-10 4E-15 94.1 10.9 79 703-784 8-95 (95)
176 cd05733 Ig6_L1-CAM_like Sixth 99.2 6.9E-11 1.5E-15 93.3 7.9 65 514-582 1-71 (77)
177 cd05874 Ig6_NrCAM Sixth immuno 99.2 1.4E-10 3.1E-15 91.2 9.0 65 514-582 1-71 (77)
178 cd05771 IgC_Tapasin_R Tapasin- 99.2 8.4E-10 1.8E-14 98.8 15.2 117 262-385 2-131 (139)
179 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 2.4E-10 5.3E-15 91.7 10.4 77 511-589 1-83 (84)
180 cd05898 Ig5_KIRREL3 Fifth immu 99.2 4.4E-10 9.5E-15 91.6 11.7 89 495-586 2-97 (98)
181 cd05873 Ig_Sema4D_like Immunog 99.2 2.9E-10 6.2E-15 90.4 10.3 66 74-146 4-70 (87)
182 TIGR00864 PCC polycystin catio 99.2 1.5E-05 3.3E-10 98.2 54.6 468 77-787 1619-2127(2740)
183 cd07701 Ig1_Necl-3 First (N-te 99.1 3.4E-10 7.4E-15 93.1 10.3 84 72-158 3-95 (95)
184 cd05875 Ig6_hNeurofascin_like 99.1 2.7E-10 5.8E-15 89.6 9.1 66 514-583 1-72 (77)
185 cd05727 Ig2_Contactin-2-like S 99.1 9.3E-11 2E-15 94.5 6.5 71 703-776 14-86 (96)
186 cd04967 Ig1_Contactin First Ig 99.1 5.4E-10 1.2E-14 91.7 10.9 80 66-152 2-87 (91)
187 cd05752 Ig1_FcgammaR_like Frst 99.1 2.1E-10 4.6E-15 90.0 8.1 66 67-146 2-68 (78)
188 cd05753 Ig2_FcgammaR_like Seco 99.1 2E-10 4.4E-15 91.7 8.0 64 703-775 10-73 (83)
189 cd05754 Ig3_Perlecan_like Thir 99.1 4.5E-10 9.8E-15 90.9 9.9 82 68-156 3-84 (85)
190 cd05729 Ig2_FGFR_like Second i 99.1 8.5E-10 1.8E-14 89.7 11.6 79 508-588 6-85 (85)
191 cd07690 Ig1_CD4 First immunogl 99.1 3.3E-10 7.1E-15 91.9 8.2 73 703-777 3-92 (94)
192 cd05757 Ig2_IL1R_like Second i 99.1 3.9E-10 8.4E-15 91.6 8.3 79 507-589 6-87 (92)
193 cd05727 Ig2_Contactin-2-like S 99.1 2.8E-10 6.1E-15 91.8 7.4 78 68-148 5-84 (96)
194 PF13895 Ig_2: Immunoglobulin 99.1 6.9E-10 1.5E-14 89.0 9.7 78 692-784 2-80 (80)
195 cd05734 Ig7_DSCAM Seventh immu 99.1 3.8E-10 8.1E-15 89.8 8.0 70 514-588 1-79 (79)
196 cd05862 Ig1_VEGFR First immuno 99.1 7.7E-10 1.7E-14 89.1 9.4 77 707-785 1-85 (86)
197 cd05882 Ig1_Necl-1 First (N-te 99.1 1.5E-09 3.3E-14 88.7 11.1 81 74-157 5-94 (95)
198 smart00410 IG_like Immunoglobu 99.1 2.8E-09 6E-14 86.8 12.2 80 703-784 5-85 (86)
199 smart00409 IG Immunoglobulin. 99.1 2.8E-09 6E-14 86.8 12.2 80 703-784 5-85 (86)
200 smart00408 IGc2 Immunoglobulin 99.1 9.1E-10 2E-14 83.5 8.5 63 706-774 1-63 (63)
201 cd05860 Ig4_SCFR Fourth immuno 99.0 2.7E-09 5.9E-14 85.9 11.0 81 703-785 14-100 (101)
202 cd05871 Ig_Semaphorin_classIII 99.0 1.3E-09 2.9E-14 88.5 9.5 77 703-786 7-90 (91)
203 cd05753 Ig2_FcgammaR_like Seco 99.0 8E-10 1.7E-14 88.3 7.9 65 508-581 11-75 (83)
204 cd05717 Ig1_Necl-1-3_like Firs 99.0 2E-09 4.4E-14 89.2 10.0 79 703-784 8-95 (95)
205 cd04979 Ig_Semaphorin_C Immuno 99.0 1.8E-09 3.9E-14 88.2 9.4 78 75-159 5-87 (89)
206 cd05885 Ig2_Necl-4 Second immu 99.0 1.4E-09 3E-14 84.3 8.1 64 710-775 2-68 (80)
207 cd07690 Ig1_CD4 First immunogl 99.0 1.4E-09 3E-14 88.2 8.3 73 76-150 2-91 (94)
208 cd05845 Ig2_L1-CAM_like Second 99.0 5.3E-10 1.1E-14 90.0 5.6 69 703-776 14-85 (95)
209 cd05845 Ig2_L1-CAM_like Second 99.0 8.8E-10 1.9E-14 88.7 6.8 78 66-147 3-82 (95)
210 cd05717 Ig1_Necl-1-3_like Firs 99.0 3.5E-09 7.5E-14 87.8 10.6 83 73-158 4-95 (95)
211 cd05862 Ig1_VEGFR First immuno 99.0 2.9E-09 6.2E-14 85.8 9.2 79 511-589 1-85 (86)
212 smart00410 IG_like Immunoglobu 98.9 1.9E-08 4.2E-13 81.7 12.7 82 75-158 3-85 (86)
213 smart00409 IG Immunoglobulin. 98.9 1.9E-08 4.2E-13 81.7 12.7 82 75-158 3-85 (86)
214 cd05881 Ig1_Necl-2 First (N-te 98.9 1.6E-08 3.5E-13 81.9 11.6 71 74-146 5-84 (95)
215 PF00047 ig: Immunoglobulin do 98.9 3E-09 6.5E-14 80.8 6.9 61 707-769 1-64 (64)
216 cd05871 Ig_Semaphorin_classIII 98.9 1.1E-08 2.3E-13 83.3 10.3 78 75-159 5-89 (91)
217 cd05897 Ig2_IL1R2_like Second 98.9 4.5E-09 9.7E-14 85.0 7.9 73 703-777 6-82 (95)
218 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 6.9E-09 1.5E-13 83.8 8.5 82 75-158 9-104 (104)
219 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 9.8E-09 2.1E-13 82.9 8.6 80 703-784 11-104 (104)
220 cd05897 Ig2_IL1R2_like Second 98.9 8.5E-09 1.8E-13 83.4 7.5 72 508-581 7-82 (95)
221 cd05885 Ig2_Necl-4 Second immu 98.9 1E-08 2.2E-13 79.6 7.5 64 514-580 2-69 (80)
222 cd05872 Ig_Sema4B_like Immunog 98.8 1.5E-08 3.3E-13 79.9 8.5 76 703-786 7-82 (85)
223 smart00408 IGc2 Immunoglobulin 98.8 1.3E-08 2.9E-13 77.0 7.9 63 510-578 1-63 (63)
224 cd05860 Ig4_SCFR Fourth immuno 98.8 5.6E-08 1.2E-12 78.4 11.0 83 505-589 12-100 (101)
225 PF13895 Ig_2: Immunoglobulin 98.8 4.2E-08 9.1E-13 78.5 10.6 78 66-158 2-80 (80)
226 cd05881 Ig1_Necl-2 First (N-te 98.8 4.9E-08 1.1E-12 79.1 10.8 67 703-771 8-83 (95)
227 cd05759 Ig2_KIRREL3-like Secon 98.8 2E-08 4.2E-13 80.6 8.5 73 710-783 2-79 (82)
228 cd05872 Ig_Sema4B_like Immunog 98.8 2.9E-08 6.3E-13 78.3 8.9 64 75-145 5-68 (85)
229 PF00047 ig: Immunoglobulin do 98.8 1.5E-08 3.2E-13 76.9 7.1 61 81-143 1-64 (64)
230 PHA03376 BARF1; Provisional 98.8 9.5E-08 2.1E-12 84.0 12.5 75 75-149 20-112 (221)
231 cd05751 Ig1_LILRB1_like First 98.8 3.3E-08 7.2E-13 80.8 8.2 74 691-772 2-75 (91)
232 cd05759 Ig2_KIRREL3-like Secon 98.7 7.6E-08 1.6E-12 77.1 9.2 73 513-586 1-78 (82)
233 PHA03376 BARF1; Provisional 98.7 2.8E-07 6E-12 81.1 12.6 123 214-344 22-162 (221)
234 PF13927 Ig_3: Immunoglobulin 98.7 3.6E-08 7.8E-13 77.8 5.8 74 691-771 1-75 (75)
235 cd05714 Ig_CSPGs_LP Immunoglob 98.6 3.3E-07 7.1E-12 77.7 11.1 79 706-786 1-104 (106)
236 cd05877 Ig_LP_like Immunoglobu 98.6 2.8E-07 6E-12 78.2 10.3 79 706-786 1-104 (106)
237 cd04983 IgV_TCR_alpha_like Imm 98.6 1.7E-07 3.6E-12 80.1 9.0 73 699-774 6-94 (109)
238 cd05751 Ig1_LILRB1_like First 98.6 1.4E-07 3.1E-12 77.0 8.1 74 65-146 2-75 (91)
239 cd04983 IgV_TCR_alpha_like Imm 98.6 2.3E-07 4.9E-12 79.3 9.2 74 72-147 4-93 (109)
240 cd05883 Ig2_Necl-2 Second immu 98.6 5.5E-07 1.2E-11 70.2 10.1 75 710-785 2-80 (82)
241 cd05713 Ig_MOG_like Immunoglob 98.6 4.3E-07 9.2E-12 76.1 10.4 76 707-784 1-99 (100)
242 cd05900 Ig_Aggrecan Immunoglob 98.6 4.4E-07 9.5E-12 76.4 9.9 80 706-785 1-109 (112)
243 cd00099 IgV Immunoglobulin var 98.6 2.7E-07 5.8E-12 78.3 8.7 70 703-774 2-91 (105)
244 cd05774 Ig_CEACAM_D1 First imm 98.6 4.6E-07 1E-11 75.3 9.5 77 703-784 9-105 (105)
245 cd05879 Ig_P0 Immunoglobulin ( 98.6 5.1E-07 1.1E-11 76.7 10.0 81 703-783 9-113 (116)
246 cd05774 Ig_CEACAM_D1 First imm 98.5 8.2E-07 1.8E-11 73.8 9.8 76 76-156 8-103 (105)
247 cd05899 IgV_TCR_beta Immunoglo 98.5 4.7E-07 1E-11 77.3 8.4 72 72-146 4-94 (110)
248 cd05877 Ig_LP_like Immunoglobu 98.5 9.8E-07 2.1E-11 74.8 10.3 80 80-159 1-103 (106)
249 cd05718 Ig1_PVR_like First imm 98.5 1.6E-06 3.4E-11 72.4 11.2 76 708-785 1-98 (98)
250 cd05713 Ig_MOG_like Immunoglob 98.5 1.3E-06 2.8E-11 73.2 10.5 78 81-158 1-99 (100)
251 cd05878 Ig_Aggrecan_like Immun 98.5 1.5E-06 3.3E-11 73.6 10.8 79 706-786 1-108 (110)
252 cd00099 IgV Immunoglobulin var 98.5 6.2E-07 1.3E-11 76.1 8.5 71 77-148 2-91 (105)
253 cd05899 IgV_TCR_beta Immunoglo 98.5 5.6E-07 1.2E-11 76.8 8.2 69 703-774 9-96 (110)
254 cd04980 IgV_L_kappa Immunoglob 98.5 8.4E-07 1.8E-11 75.1 9.0 74 71-146 5-93 (106)
255 cd04980 IgV_L_kappa Immunoglob 98.5 9.1E-07 2E-11 74.9 8.9 68 703-772 11-93 (106)
256 cd05879 Ig_P0 Immunoglobulin ( 98.5 1.9E-06 4E-11 73.3 10.6 76 73-148 5-104 (116)
257 cd05883 Ig2_Necl-2 Second immu 98.4 2.3E-06 5.1E-11 66.7 10.0 75 514-589 2-80 (82)
258 cd04982 IgV_TCR_gamma Immunogl 98.4 1.1E-06 2.3E-11 76.0 9.2 73 73-145 5-98 (116)
259 cd05755 Ig2_ICAM-1_like Second 98.4 1.2E-06 2.5E-11 71.5 8.6 72 703-775 12-87 (100)
260 cd05714 Ig_CSPGs_LP Immunoglob 98.4 2.4E-06 5.1E-11 72.4 10.5 80 80-159 1-103 (106)
261 cd05900 Ig_Aggrecan Immunoglob 98.4 1.8E-06 3.9E-11 72.7 9.6 80 80-159 1-109 (112)
262 cd05878 Ig_Aggrecan_like Immun 98.4 2.2E-06 4.8E-11 72.6 10.0 80 80-159 1-107 (110)
263 cd04984 IgV_L_lambda Immunoglo 98.4 1.5E-06 3.3E-11 72.3 8.8 68 703-772 2-85 (98)
264 cd04984 IgV_L_lambda Immunoglo 98.4 1.5E-06 3.3E-11 72.3 8.8 70 77-146 2-85 (98)
265 cd05711 Ig_FcalphaRI Immunoglo 98.4 1.3E-06 2.9E-11 71.6 8.3 74 692-770 2-75 (94)
266 cd05761 Ig2_Necl-1-4_like Seco 98.4 2.2E-06 4.7E-11 68.4 9.0 64 710-775 2-70 (82)
267 cd05741 Ig_CEACAM_D1_like Firs 98.4 1.5E-06 3.2E-11 71.6 8.3 72 707-783 1-91 (92)
268 cd05775 Ig_SLAM-CD84_like_N N- 98.4 1.6E-06 3.5E-11 71.7 8.5 78 705-784 2-96 (97)
269 cd05888 Ig1_Nectin-4_like Frst 98.4 3.7E-06 8.1E-11 70.0 10.6 74 709-784 2-99 (100)
270 cd07694 Ig2_CD4 Second immunog 98.4 4.6E-06 9.9E-11 64.6 9.9 79 75-159 8-86 (88)
271 cd05880 Ig_EVA1 Immunoglobulin 98.4 2.4E-06 5.1E-11 73.2 9.3 77 72-148 4-103 (115)
272 cd05711 Ig_FcalphaRI Immunoglo 98.4 2.2E-06 4.7E-11 70.3 8.4 75 66-145 2-76 (94)
273 cd05718 Ig1_PVR_like First imm 98.3 3.8E-06 8.2E-11 70.1 10.0 77 82-158 1-97 (98)
274 cd04982 IgV_TCR_gamma Immunogl 98.3 2.2E-06 4.8E-11 74.0 8.5 67 703-771 9-98 (116)
275 PHA02987 Ig domain OX-2-like p 98.3 3.2E-06 7E-11 75.5 9.4 87 75-162 24-125 (189)
276 cd07705 Ig2_Necl-1 Second immu 98.3 4.6E-06 9.9E-11 66.4 9.5 64 710-774 2-70 (83)
277 cd05902 Ig_Neurocan Immunoglob 98.3 5.9E-06 1.3E-10 69.3 10.5 79 706-786 1-108 (110)
278 cd05761 Ig2_Necl-1-4_like Seco 98.3 3.9E-06 8.5E-11 66.9 9.0 66 514-580 2-71 (82)
279 cd05886 Ig1_Nectin-1_like Firs 98.3 5.9E-06 1.3E-10 67.9 10.2 75 709-784 2-98 (99)
280 cd05715 Ig_P0-like Immunoglobu 98.3 3.3E-06 7.2E-11 72.7 9.1 76 73-148 5-104 (116)
281 cd05755 Ig2_ICAM-1_like Second 98.3 3.5E-06 7.7E-11 68.6 8.6 70 508-579 13-87 (100)
282 cd05741 Ig_CEACAM_D1_like Firs 98.3 3.2E-06 7E-11 69.6 8.6 63 81-148 1-81 (92)
283 cd05880 Ig_EVA1 Immunoglobulin 98.3 2.9E-06 6.2E-11 72.7 8.4 71 703-775 9-104 (115)
284 cd05715 Ig_P0-like Immunoglobu 98.3 3.3E-06 7.1E-11 72.8 7.9 73 703-775 9-105 (116)
285 cd05901 Ig_Versican Immunoglob 98.3 1.5E-05 3.2E-10 66.9 11.3 79 706-786 1-115 (117)
286 cd00098 IgC Immunoglobulin Con 98.2 4.1E-06 8.8E-11 69.5 7.6 71 509-579 11-87 (95)
287 PF13927 Ig_3: Immunoglobulin 98.2 3.9E-06 8.3E-11 66.0 6.9 73 203-282 2-75 (75)
288 cd07705 Ig2_Necl-1 Second immu 98.2 9.3E-06 2E-10 64.7 8.7 65 514-579 2-71 (83)
289 cd00098 IgC Immunoglobulin Con 98.2 4.7E-06 1E-10 69.1 7.2 69 705-775 11-87 (95)
290 cd07706 IgV_TCR_delta Immunogl 98.2 9.3E-06 2E-10 70.1 9.0 73 72-145 5-93 (116)
291 cd05884 Ig2_Necl-3 Second immu 98.2 9.3E-06 2E-10 64.5 8.3 65 710-775 2-71 (83)
292 cd05775 Ig_SLAM-CD84_like_N N- 98.2 7.6E-06 1.6E-10 67.7 8.0 79 509-588 2-96 (97)
293 cd05884 Ig2_Necl-3 Second immu 98.2 1.1E-05 2.4E-10 64.0 8.4 65 514-579 2-71 (83)
294 cd05772 IgC_SIRP Signal-regula 98.2 2.7E-05 5.9E-10 65.5 11.1 69 508-577 18-92 (111)
295 PHA02987 Ig domain OX-2-like p 98.2 1.1E-05 2.4E-10 72.1 8.9 85 703-788 26-125 (189)
296 PF07686 V-set: Immunoglobulin 98.1 2.2E-05 4.9E-10 67.6 10.7 85 73-158 8-114 (114)
297 PF07686 V-set: Immunoglobulin 98.1 2.7E-05 5.9E-10 67.1 11.1 81 703-784 12-114 (114)
298 cd05888 Ig1_Nectin-4_like Frst 98.1 2.6E-05 5.6E-10 64.9 10.3 77 82-158 1-99 (100)
299 cd05902 Ig_Neurocan Immunoglob 98.1 2.7E-05 5.9E-10 65.3 9.9 79 81-159 2-107 (110)
300 cd05772 IgC_SIRP Signal-regula 98.1 3.6E-05 7.9E-10 64.8 10.7 79 691-773 8-92 (111)
301 cd05887 Ig1_Nectin-3_like Firs 98.1 3.2E-05 6.9E-10 63.0 9.9 76 708-784 1-95 (96)
302 cd05712 Ig_Siglec_N Immunoglob 98.1 2E-05 4.4E-10 68.1 9.3 76 71-146 4-102 (119)
303 cd07706 IgV_TCR_delta Immunogl 98.1 1.9E-05 4.1E-10 68.1 9.1 68 703-772 10-94 (116)
304 cd05846 Ig1_MRC-OX-2_like Firs 98.1 1.7E-05 3.8E-10 65.7 8.3 77 81-158 1-96 (97)
305 cd05846 Ig1_MRC-OX-2_like Firs 98.1 2.5E-05 5.3E-10 64.8 9.1 76 707-784 1-96 (97)
306 cd07699 IgC_L Immunoglobulin C 98.1 1.6E-05 3.4E-10 65.9 7.9 83 495-577 1-89 (100)
307 cd05716 Ig_pIgR Immunoglobulin 98.1 2E-05 4.4E-10 65.6 8.4 70 76-146 2-86 (98)
308 cd05716 Ig_pIgR Immunoglobulin 98.1 1.7E-05 3.8E-10 66.0 8.0 70 703-773 3-87 (98)
309 cd05886 Ig1_Nectin-1_like Firs 98.0 5.3E-05 1.1E-09 62.3 10.3 76 83-158 2-98 (99)
310 cd05766 IgC_MHC_II_beta Class 98.0 5.2E-05 1.1E-09 61.9 10.0 72 508-579 11-85 (94)
311 cd07698 IgC_MHC_I_alpha3 Class 98.0 4.4E-05 9.6E-10 62.5 9.6 80 495-578 2-84 (93)
312 cd05901 Ig_Versican Immunoglob 98.0 8.1E-05 1.8E-09 62.5 10.9 79 81-159 2-114 (117)
313 PHA03269 envelope glycoprotein 98.0 0.0009 1.9E-08 68.3 20.0 81 260-349 288-373 (566)
314 cd05720 Ig_CD8_alpha Immunoglo 98.0 2.3E-05 5.1E-10 65.7 7.7 67 77-145 2-90 (104)
315 cd07700 IgV_CD8_beta Immunoglo 98.0 3.2E-05 6.9E-10 65.4 8.2 68 703-772 2-94 (107)
316 cd05887 Ig1_Nectin-3_like Firs 98.0 6.2E-05 1.3E-09 61.3 9.3 76 82-158 1-95 (96)
317 cd07700 IgV_CD8_beta Immunoglo 98.0 3.7E-05 8.1E-10 65.0 8.2 68 77-145 2-93 (107)
318 PF08205 C2-set_2: CD80-like C 97.9 4.4E-05 9.4E-10 62.2 8.1 69 707-776 14-87 (89)
319 cd05767 IgC_MHC_II_alpha Class 97.9 7.3E-05 1.6E-09 60.8 9.0 78 495-577 1-84 (94)
320 cd07698 IgC_MHC_I_alpha3 Class 97.9 8.6E-05 1.9E-09 60.8 9.2 76 691-773 2-83 (93)
321 cd07699 IgC_L Immunoglobulin C 97.9 7E-05 1.5E-09 62.1 8.7 82 66-147 2-89 (100)
322 cd05720 Ig_CD8_alpha Immunoglo 97.9 4.7E-05 1E-09 63.9 7.8 67 703-771 2-90 (104)
323 cd05769 IgC_TCR_beta T cell re 97.9 7.6E-05 1.7E-09 63.0 8.9 87 495-581 2-96 (115)
324 cd07694 Ig2_CD4 Second immunog 97.9 0.0001 2.2E-09 57.3 8.7 77 214-296 10-86 (88)
325 cd05770 IgC_beta2m Class I maj 97.9 0.0002 4.3E-09 58.0 10.9 69 508-577 12-83 (93)
326 cd04981 IgV_H Immunoglobulin ( 97.9 6.9E-05 1.5E-09 64.3 8.5 73 73-145 4-97 (117)
327 cd05768 IgC_CH4 CH4 domain (fo 97.9 6.3E-05 1.4E-09 62.4 7.9 78 500-577 5-91 (102)
328 cd00096 Ig Immunoglobulin doma 97.9 7.4E-05 1.6E-09 57.6 7.9 64 710-775 1-68 (74)
329 PHA03273 envelope glycoprotein 97.8 0.0025 5.5E-08 65.1 20.2 79 261-348 198-280 (486)
330 PHA03270 envelope glycoprotein 97.8 0.0048 1E-07 62.4 21.7 212 77-349 138-363 (466)
331 PHA03270 envelope glycoprotein 97.8 0.0043 9.2E-08 62.8 20.5 80 261-349 182-265 (466)
332 smart00407 IGc1 Immunoglobulin 97.8 0.00017 3.6E-09 56.3 8.7 65 513-577 1-71 (75)
333 cd05889 Ig1_DNAM-1_like First 97.8 0.00023 5E-09 58.0 9.5 74 708-782 1-93 (96)
334 cd05847 IgC_CH2_IgE CH2 domain 97.8 0.00019 4E-09 58.5 9.0 72 509-580 12-89 (94)
335 PHA03273 envelope glycoprotein 97.8 0.0033 7.2E-08 64.2 19.4 163 124-344 198-376 (486)
336 cd05768 IgC_CH4 CH4 domain (fo 97.8 0.00017 3.7E-09 59.9 8.7 76 72-147 7-91 (102)
337 cd07697 IgC_TCR_gamma T cell r 97.7 0.00026 5.6E-09 57.6 9.3 78 497-576 2-84 (96)
338 cd05712 Ig_Siglec_N Immunoglob 97.7 0.00019 4E-09 62.1 9.1 68 703-772 10-102 (119)
339 cd05766 IgC_MHC_II_beta Class 97.7 0.00038 8.3E-09 56.8 10.2 70 78-147 11-83 (94)
340 cd05719 Ig2_PVR_like Second im 97.7 0.00027 5.9E-09 57.6 9.2 73 706-782 14-93 (95)
341 cd05769 IgC_TCR_beta T cell re 97.7 0.00029 6.4E-09 59.5 9.2 84 65-149 2-94 (115)
342 PF08205 C2-set_2: CD80-like C 97.7 0.00018 3.9E-09 58.6 7.8 69 511-580 14-87 (89)
343 cd05767 IgC_MHC_II_alpha Class 97.7 0.00028 6.1E-09 57.4 8.6 66 704-772 12-83 (94)
344 smart00407 IGc1 Immunoglobulin 97.7 0.00026 5.6E-09 55.2 8.2 65 709-773 1-71 (75)
345 cd05770 IgC_beta2m Class I maj 97.7 0.00043 9.4E-09 56.0 9.6 65 704-772 12-82 (93)
346 cd05847 IgC_CH2_IgE CH2 domain 97.7 0.00034 7.5E-09 56.9 8.9 74 705-778 12-91 (94)
347 smart00406 IGv Immunoglobulin 97.6 0.00015 3.2E-09 57.9 6.6 61 83-143 1-81 (81)
348 cd04981 IgV_H Immunoglobulin ( 97.6 0.00041 8.8E-09 59.6 9.5 67 703-771 8-97 (117)
349 PHA03271 envelope glycoprotein 97.6 0.0083 1.8E-07 60.2 19.3 126 113-281 194-332 (490)
350 cd07696 IgC_CH3 CH3 domain (th 97.6 0.00031 6.7E-09 57.5 8.1 72 507-578 10-87 (96)
351 KOG0613|consensus 97.6 0.00029 6.2E-09 81.0 10.4 225 512-790 206-433 (1205)
352 KOG0613|consensus 97.6 0.00079 1.7E-08 77.5 13.7 405 214-732 240-684 (1205)
353 PHA03271 envelope glycoprotein 97.6 0.013 2.8E-07 59.0 20.2 82 260-349 206-291 (490)
354 cd05889 Ig1_DNAM-1_like First 97.6 0.00065 1.4E-08 55.4 9.3 74 82-156 1-93 (96)
355 cd07696 IgC_CH3 CH3 domain (th 97.6 0.00063 1.4E-08 55.7 9.2 73 75-147 8-86 (96)
356 PF07654 C1-set: Immunoglobuli 97.5 0.00041 8.8E-09 55.5 7.9 69 508-579 5-79 (83)
357 cd00096 Ig Immunoglobulin doma 97.5 0.00044 9.5E-09 53.1 7.9 62 514-577 1-66 (74)
358 PHA03269 envelope glycoprotein 97.5 0.0071 1.5E-07 62.0 17.9 168 122-347 287-471 (566)
359 smart00406 IGv Immunoglobulin 97.5 0.00038 8.3E-09 55.4 7.6 59 709-769 1-81 (81)
360 KOG1480|consensus 97.5 3E-05 6.5E-10 83.1 1.3 89 696-789 134-223 (909)
361 cd04986 IgC_CH2 CH2 domain (se 97.5 0.00037 8.1E-09 56.7 7.1 83 495-578 3-90 (99)
362 cd07704 Ig2_Nectin-3-4_like Se 97.4 0.0006 1.3E-08 55.2 7.2 70 703-774 12-85 (97)
363 cd07691 Ig_CD3_gamma_delta Imm 97.4 0.0004 8.7E-09 50.8 5.5 61 706-786 5-65 (69)
364 cd07697 IgC_TCR_gamma T cell r 97.4 0.0014 3E-08 53.4 8.8 70 75-146 10-84 (96)
365 cd04985 IgC_CH1 CH1 domain (fi 97.3 0.0016 3.5E-08 53.2 8.5 67 510-577 15-87 (95)
366 cd07703 Ig2_Nectin-2_like Seco 97.3 0.0016 3.4E-08 53.0 8.3 73 708-782 16-91 (95)
367 cd05719 Ig2_PVR_like Second im 97.3 0.0023 5E-08 52.2 9.2 68 511-582 15-87 (95)
368 PF07654 C1-set: Immunoglobuli 97.3 0.0011 2.3E-08 53.0 7.2 68 704-774 5-78 (83)
369 cd07704 Ig2_Nectin-3-4_like Se 97.2 0.0015 3.4E-08 52.8 7.2 74 503-578 8-85 (97)
370 cd07692 Ig_CD3_epsilon Immunog 97.2 0.0007 1.5E-08 49.3 4.5 51 705-771 5-55 (65)
371 cd05721 IgV_CTLA-4 Immunoglobu 97.1 0.0037 8E-08 51.9 9.0 68 75-143 7-93 (115)
372 cd05721 IgV_CTLA-4 Immunoglobu 97.1 0.0034 7.4E-08 52.1 8.8 67 703-769 9-93 (115)
373 cd07692 Ig_CD3_epsilon Immunog 97.1 0.00089 1.9E-08 48.8 4.5 52 79-146 5-56 (65)
374 cd04986 IgC_CH2 CH2 domain (se 97.1 0.0043 9.4E-08 50.6 8.8 81 66-147 4-89 (99)
375 PHA02982 hypothetical protein; 97.0 0.0034 7.4E-08 56.6 8.6 84 75-159 33-136 (251)
376 cd04985 IgC_CH1 CH1 domain (fi 97.0 0.0038 8.2E-08 51.0 8.3 67 706-773 15-87 (95)
377 cd07703 Ig2_Nectin-2_like Seco 97.0 0.0048 1E-07 50.2 8.2 72 512-585 16-90 (95)
378 cd07689 Ig2_VCAM-1 Second immu 96.9 0.005 1.1E-07 49.4 7.4 67 703-770 11-83 (99)
379 KOG4597|consensus 96.9 0.0021 4.5E-08 65.5 6.2 93 692-787 197-294 (560)
380 KOG1480|consensus 96.8 0.00098 2.1E-08 72.0 4.1 190 48-287 8-209 (909)
381 cd07691 Ig_CD3_gamma_delta Imm 96.7 0.0035 7.7E-08 46.0 5.0 61 510-590 5-65 (69)
382 cd07689 Ig2_VCAM-1 Second immu 96.7 0.008 1.7E-07 48.3 7.3 67 77-146 11-85 (99)
383 PHA02633 hypothetical protein; 96.7 0.0054 1.2E-07 43.8 5.5 38 751-788 19-56 (63)
384 PHA02633 hypothetical protein; 96.7 0.0049 1.1E-07 43.9 5.3 38 125-162 19-56 (63)
385 PF08204 V-set_CD47: CD47 immu 96.2 0.011 2.4E-07 50.3 5.5 78 80-158 26-119 (130)
386 PF08204 V-set_CD47: CD47 immu 96.1 0.0038 8.2E-08 53.1 2.5 80 703-785 23-120 (130)
387 PHA02914 Immunoglobulin-like d 95.6 0.52 1.1E-05 47.6 14.9 167 71-285 269-468 (500)
388 PHA02982 hypothetical protein; 95.5 0.042 9E-07 49.9 6.5 81 703-784 35-135 (251)
389 KOG4597|consensus 94.8 0.061 1.3E-06 55.2 6.1 85 73-159 203-292 (560)
390 PHA03042 CD47-like protein; Pr 94.6 0.18 3.9E-06 48.3 8.4 72 705-786 29-106 (286)
391 PF07354 Sp38: Zona-pellucida- 94.4 0.057 1.2E-06 51.4 4.7 49 95-146 10-59 (271)
392 PHA03283 envelope glycoprotein 94.4 1.2 2.6E-05 47.1 14.4 98 124-242 134-234 (542)
393 PF07354 Sp38: Zona-pellucida- 94.1 0.091 2E-06 50.1 5.3 49 722-773 11-60 (271)
394 PHA02914 Immunoglobulin-like d 93.8 9 0.00019 39.1 33.2 74 312-385 272-369 (500)
395 PHA03283 envelope glycoprotein 93.3 2.6 5.7E-05 44.7 14.6 97 627-730 134-233 (542)
396 PF11465 Receptor_2B4: Natural 93.0 0.58 1.3E-05 38.0 7.4 38 113-152 62-99 (108)
397 PF11465 Receptor_2B4: Natural 92.9 0.32 7E-06 39.5 5.8 62 720-784 38-104 (108)
398 PHA03042 CD47-like protein; Pr 92.3 0.55 1.2E-05 45.1 7.4 73 509-588 29-104 (286)
399 PHA02865 MHC-like TNF binding 91.7 0.66 1.4E-05 46.8 7.7 37 690-731 202-238 (338)
400 PHA02865 MHC-like TNF binding 91.6 0.78 1.7E-05 46.3 8.1 39 492-535 200-238 (338)
401 PF06328 Lep_receptor_Ig: Ig-l 91.6 0.99 2.1E-05 36.2 7.2 68 75-144 12-82 (89)
402 PF05790 C2-set: Immunoglobuli 91.2 1.8 3.8E-05 33.9 8.1 52 97-158 26-78 (80)
403 PF06328 Lep_receptor_Ig: Ig-l 91.1 0.81 1.7E-05 36.7 6.2 64 508-573 15-81 (89)
404 PF02124 Marek_A: Marek's dise 90.4 16 0.00034 34.5 15.9 75 491-574 78-158 (211)
405 PHA03282 envelope glycoprotein 90.3 13 0.00028 39.0 15.3 23 260-282 332-354 (540)
406 PHA03286 envelope glycoprotein 90.3 11 0.00024 39.4 14.7 94 627-730 127-225 (492)
407 PHA03286 envelope glycoprotein 90.2 17 0.00038 37.9 16.1 37 124-160 127-164 (492)
408 PF06832 BiPBP_C: Penicillin-B 89.0 6.2 0.00013 31.7 10.0 75 690-778 9-86 (89)
409 PHA03282 envelope glycoprotein 88.8 11 0.00023 39.6 13.4 22 749-770 332-353 (540)
410 PF02124 Marek_A: Marek's dise 88.6 22 0.00048 33.6 15.3 51 97-147 6-63 (211)
411 PHA03052 Hypothetical protein; 88.4 1.8 3.9E-05 31.7 5.6 37 74-110 5-42 (69)
412 PHA03281 envelope glycoprotein 88.3 13 0.00028 39.7 13.8 92 628-730 299-394 (642)
413 PHA03052 Hypothetical protein; 87.7 2.2 4.8E-05 31.3 5.6 37 504-540 5-42 (69)
414 PHA03281 envelope glycoprotein 87.0 15 0.00032 39.4 13.3 92 125-241 299-394 (642)
415 PF02480 Herpes_gE: Alphaherpe 87.0 0.59 1.3E-05 50.0 3.6 95 125-241 90-189 (439)
416 PHA03189 UL14 tegument protein 86.4 6.2 0.00013 38.7 9.6 86 73-159 59-168 (348)
417 PF05790 C2-set: Immunoglobuli 85.8 7.2 0.00016 30.5 8.2 51 724-784 27-78 (80)
418 PHA03189 UL14 tegument protein 84.4 7.4 0.00016 38.2 9.1 78 703-781 63-165 (348)
419 PF02480 Herpes_gE: Alphaherpe 83.9 1.8 4E-05 46.4 5.5 94 628-730 90-189 (439)
420 KOG1026|consensus 82.5 1.4 3E-05 49.8 4.0 147 507-665 203-366 (774)
421 PF03921 ICAM_N: Intercellular 81.5 6.9 0.00015 31.4 6.5 78 75-162 12-89 (91)
422 PF06832 BiPBP_C: Penicillin-B 79.9 29 0.00063 27.8 10.3 76 493-582 8-86 (89)
423 PRK14081 triple tyrosine motif 76.5 1.4E+02 0.0031 33.9 29.4 233 77-383 301-552 (667)
424 cd05890 Ig2_Nectin-1_like Seco 74.5 9.6 0.00021 30.5 5.3 70 709-784 22-98 (98)
425 KOG0200|consensus 72.8 1.8E+02 0.0039 33.4 17.5 39 551-589 114-152 (609)
426 PRK14081 triple tyrosine motif 72.0 1.8E+02 0.004 33.0 32.3 144 215-382 302-455 (667)
427 cd05890 Ig2_Nectin-1_like Seco 71.0 19 0.00041 28.9 6.3 70 512-587 21-97 (98)
428 PF02440 Adeno_E3_CR1: Adenovi 71.0 7 0.00015 28.7 3.7 21 704-730 2-22 (63)
429 KOG0200|consensus 68.1 19 0.00041 41.2 8.4 122 628-785 14-152 (609)
430 PF03921 ICAM_N: Intercellular 65.6 70 0.0015 25.7 11.0 75 316-401 15-90 (91)
431 KOG1026|consensus 61.8 11 0.00024 42.9 4.7 290 75-400 61-366 (774)
432 smart00089 PKD Repeats in poly 58.4 83 0.0018 24.2 9.0 65 704-784 11-78 (79)
433 PHA03112 IL-18 binding protein 57.7 49 0.0011 28.9 6.9 28 508-536 35-63 (141)
434 PHA03240 envelope glycoprotein 54.8 21 0.00045 33.1 4.4 81 703-785 34-144 (258)
435 PHA03112 IL-18 binding protein 51.1 1.3E+02 0.0027 26.5 8.3 28 703-732 34-63 (141)
436 PF00801 PKD: PKD domain; Int 50.3 86 0.0019 23.4 6.8 60 703-777 7-68 (69)
437 PHA03240 envelope glycoprotein 49.9 20 0.00044 33.1 3.5 66 75-142 32-123 (258)
438 PF02010 REJ: REJ domain; Int 46.8 29 0.00063 37.9 5.1 85 508-593 205-302 (440)
439 PF11141 DUF2914: Protein of u 46.4 1.2E+02 0.0027 22.6 7.0 60 723-784 6-65 (66)
440 PF11141 DUF2914: Protein of u 45.7 1.3E+02 0.0027 22.6 7.4 60 527-588 6-65 (66)
441 PF00801 PKD: PKD domain; Int 42.2 1.4E+02 0.003 22.3 6.8 58 508-581 8-68 (69)
442 PF02440 Adeno_E3_CR1: Adenovi 38.6 48 0.001 24.5 3.4 21 215-241 2-22 (63)
443 PF12988 DUF3872: Domain of un 38.0 2.7E+02 0.0059 24.2 9.4 72 703-777 43-127 (137)
444 PF12988 DUF3872: Domain of un 36.9 2.8E+02 0.0062 24.1 9.1 77 71-150 37-126 (137)
445 PF02010 REJ: REJ domain; Int 35.1 58 0.0013 35.6 5.2 79 703-784 204-297 (440)
446 smart00089 PKD Repeats in poly 33.8 2.2E+02 0.0047 21.8 8.3 66 508-588 11-78 (79)
447 PF01688 Herpes_gI: Alphaherpe 27.0 1.1E+02 0.0023 27.7 4.4 26 124-149 124-149 (161)
448 PF07705 CARDB: CARDB; InterP 25.8 3.5E+02 0.0075 21.6 8.6 35 75-109 12-49 (101)
449 PF01688 Herpes_gI: Alphaherpe 24.8 1.7E+02 0.0037 26.5 5.2 35 627-661 124-158 (161)
450 PF07705 CARDB: CARDB; InterP 24.6 2.4E+02 0.0052 22.6 6.1 32 508-539 15-49 (101)
451 cd00146 PKD polycystic kidney 22.5 3.6E+02 0.0078 20.6 8.2 63 707-783 14-80 (81)
No 1
>KOG3513|consensus
Probab=100.00 E-value=2.9e-60 Score=516.46 Aligned_cols=539 Identities=24% Similarity=0.340 Sum_probs=416.0
Q ss_pred CeEEecCCCCceecCCCc--EEEEEEEecCCCCCceEEEEECCEecCCCC--ceEEEecCcEEEEEEcccc-cCCCeEEE
Q psy2166 66 PVFIVPLKPEFKLGEAQP--LHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTADFGFVTLDLTEVY-DRDQGIYT 140 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~--v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~--~~~~~~~~~~~~L~I~~~~-~~D~G~Y~ 140 (805)
|.|+..+........-+. ++|.|.+. |+|.|++.|+|||..+.... ++.+. ++ +|.|.+.. ..|.|.|+
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~--G~P~Psy~W~kng~~~d~~~~~~~~~~--~G--~lvI~~p~~~~d~G~Yq 113 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEAN--GNPEPSYRWTKNGTEFDPTEYPRVSVL--GG--TLVITNPDAALDQGIYQ 113 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEec--CCCCceeEEEECCeecccccccceeee--cC--ceEecCCcchhhcceeE
Confidence 888877765544444443 99999999 79999999999999887654 44444 33 67887777 88999999
Q ss_pred EEEEeCCeeEEEE-EEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCc
Q psy2166 141 CRAWNLAGETFTS-TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE 219 (805)
Q Consensus 141 C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 219 (805)
|.|+|..|...+. +.|... .-+.|...-++...+.+|+
T Consensus 114 C~AsN~~Gta~S~~~~l~~~-----------------------------------------~i~~F~~e~~~~v~v~eG~ 152 (1051)
T KOG3513|consen 114 CFASNKLGTAVSREARLQFG-----------------------------------------FIPKFKKEERSPVEVEEGD 152 (1051)
T ss_pred EEeecccceeeccceeeccc-----------------------------------------ccccCccccCCcEEEEeCC
Confidence 9999999887553 333321 1233443334455689999
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeE---EEEEEEEEe
Q psy2166 220 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA---EISVNLECV 296 (805)
Q Consensus 220 ~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~---~~~~~l~v~ 296 (805)
.+.|.|.-- .+.|.+.+.|..+..+--.....+.+.......|.|.++..+|.+.|.|.|.+..... ...+.|.+.
T Consensus 153 ~~~L~C~pP-~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~ 231 (1051)
T KOG3513|consen 153 GVVLPCNPP-AHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVR 231 (1051)
T ss_pred ceEEeCCCC-CCCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEc
Confidence 999999753 5778899999987654311111111222333479999999999999999999843222 233344431
Q ss_pred c--cCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCc
Q psy2166 297 D--KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDS 374 (805)
Q Consensus 297 ~--~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~ 374 (805)
. .....+|.+............|+.+.|.|-+. |.|.|.|.|.|.+.... ..+..... ...+|.|.++..+|+
T Consensus 232 ~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~--G~P~P~i~W~k~~g~~~-~~r~~~~~--~~~vL~I~nv~~~D~ 306 (1051)
T KOG3513|consen 232 SNNVMREYAPKILVPFPETETALKGQSVKLECFAL--GNPTPQIKWRKVDGKPP-PRRATYSN--YGKVLKIPNVQYEDA 306 (1051)
T ss_pred ccccccccCCccccCCCCcccccCCCeEEEEEEec--CCCCCcEEEEeCCCCCC-Ccceeeec--cccEEEecccCcCCC
Confidence 1 11235666666655455578999999999997 99999999999876321 22333222 233799999999999
Q ss_pred eEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCce
Q psy2166 375 GEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQS 454 (805)
Q Consensus 375 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (805)
|.|.|.|.|..|.......+.|+
T Consensus 307 G~Y~C~AeN~~G~~~~~~~v~v~--------------------------------------------------------- 329 (1051)
T KOG3513|consen 307 GEYECIAENSRGSATHSGHVTVY--------------------------------------------------------- 329 (1051)
T ss_pred eEEEEEEecccccceeeEEEEEe---------------------------------------------------------
Confidence 99999999999988888888874
Q ss_pred EEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEE
Q psy2166 455 AHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY 534 (805)
Q Consensus 455 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~ 534 (805)
.+|.+...+.+.. +-.|++++|.|.+. |.|.|.|+|+|
T Consensus 330 ---------------------------------------a~P~w~~~~~d~~-~~~gs~v~~eC~a~--g~P~p~v~Wlk 367 (1051)
T KOG3513|consen 330 ---------------------------------------APPYWLQKPQDTE-ADTGSNVTLECKAS--GKPNPTVKWLK 367 (1051)
T ss_pred ---------------------------------------cCchhhcccceeE-ecCCCCeEEEEEec--CCCCCceEEee
Confidence 5677777666665 88999999999999 88999999999
Q ss_pred CCEEccCCCc---eEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeee-e----------------
Q psy2166 535 NGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTN-L---------------- 594 (805)
Q Consensus 535 ~g~~l~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~-~---------------- 594 (805)
||.+|....+ +.+.. + +|.|.+++.+|+|+|+|.|+|.+|....++.|.|.+.+. +
T Consensus 368 Ng~pl~~~~r~~~~~i~~--g--~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~ 443 (1051)
T KOG3513|consen 368 NGEPLEPAERDPRYKIDD--G--TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGT 443 (1051)
T ss_pred CCeecCccCCCcceEEeC--C--EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCe
Confidence 9999986555 55433 2 499999999999999999999999999999999987632 1
Q ss_pred -ee-----cCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccc
Q psy2166 595 -IL-----ESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI 668 (805)
Q Consensus 595 -~~-----~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~ 668 (805)
++ ..|.|.++|++.++.+..++|+.+..+|+ |.|.+++.+|+|.|+|.|+|..|.......|.|.+
T Consensus 444 v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGt---L~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd----- 515 (1051)
T KOG3513|consen 444 VTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGT---LEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD----- 515 (1051)
T ss_pred EEEeeccCCCCcceEEEEcCCcccccCceEEECCCCc---EEecccCcccCcEEEEEEEcccCccceEEEEEEec-----
Confidence 22 24788999999999888889999988876 99999999999999999999999999999999984
Q ss_pred cccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccC---CCCeEEEe
Q psy2166 669 LESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA---SHRIRTVH 745 (805)
Q Consensus 669 ~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~---~~~~~~~~ 745 (805)
+++|...|.+. .+..|+.+.|.|.+..+......|.|.+||+.+.- ...++...
T Consensus 516 ----------------------~tri~~~P~~~-~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~ 572 (1051)
T KOG3513|consen 516 ----------------------ATRITLAPSNT-DVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEIND 572 (1051)
T ss_pred ----------------------CceEEeccchh-hhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeC
Confidence 78888888888 99999999999999855555678999999997653 33444332
Q ss_pred eCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEeCCCc
Q psy2166 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791 (805)
Q Consensus 746 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~ 791 (805)
......|+|.++...|+|.|+|+|.-.+-+.+..+.|.|+..|-++
T Consensus 573 ~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP 618 (1051)
T KOG3513|consen 573 GSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPP 618 (1051)
T ss_pred CcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCC
Confidence 2222469999999999999999999988899999999998764443
No 2
>KOG3513|consensus
Probab=100.00 E-value=8.9e-53 Score=458.07 Aligned_cols=496 Identities=24% Similarity=0.335 Sum_probs=390.9
Q ss_pred EEEEEEecCCc-----eeccccCC---------CCchhhhhHHhhh-hhhcCccccCCCCCCCCc----------CCCeE
Q psy2166 14 SGTLKCLGQKD-----IYLETQHP---------MGAAGLEKVQEVE-HALAGKYQRQPSGPEETF----------AKPVF 68 (805)
Q Consensus 14 ~~~l~~~~~~~-----~~~~~~~~---------~~~~g~~~i~~~~-~~d~g~y~c~~~~~~~~~----------~~p~~ 68 (805)
.++|.|.+++. .|..++.. ....|.+.|.+.. ..|.|.|+|.+.+..... -.+.|
T Consensus 59 ~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~~G~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~F 138 (1051)
T KOG3513|consen 59 SVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVLGGTLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPKF 138 (1051)
T ss_pred cEEEEEEecCCCCceeEEEECCeecccccccceeeecCceEecCCcchhhcceeEEEeecccceeeccceeecccccccC
Confidence 47888887773 34332211 1235778887777 899999999888664321 24455
Q ss_pred EecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEe-cCC--CCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 69 IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKP-LEL--GSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 69 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~-i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
.....+.+.+.+|+.+.|.|.... +.|.+.+.|..++.+ +.. +.|+.+..+| .|.|.++..+|.+.|.|.|.+
T Consensus 139 ~~e~~~~v~v~eG~~~~L~C~pP~-~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G---~Lyfs~V~~~D~~~Y~C~a~~ 214 (1051)
T KOG3513|consen 139 KKEERSPVEVEEGDGVVLPCNPPA-HFPPLRYYWMLNEFPHFVQIDNRRVFSQENG---NLYFSNVETSDFGNYICSATF 214 (1051)
T ss_pred ccccCCcEEEEeCCceEEeCCCCC-CCCCccEEehhccCCcccccCcceeEecccc---eEEEeecchhhcCceEEEEEc
Confidence 545555789999999999999864 578899999987543 222 3367676666 799999999999999999988
Q ss_pred CCeeE---EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEE
Q psy2166 146 LAGET---FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 222 (805)
Q Consensus 146 ~~g~~---~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 222 (805)
..-.. ...+.|.+.... .....+|.|...++.......|+.+.
T Consensus 215 ~~~~~~v~~~~~~L~~~~~~----------------------------------~~~~~~P~i~~~~p~~~~a~~G~~v~ 260 (1051)
T KOG3513|consen 215 PSTQTIVQGPPFPLIVRSNN----------------------------------VMREYAPKILVPFPETETALKGQSVK 260 (1051)
T ss_pred hhhcccccCCceeEEEcccc----------------------------------cccccCCccccCCCCcccccCCCeEE
Confidence 43211 122333331110 11125677777766566688999999
Q ss_pred EEEEEeeCCCCCeEEEEEECCE-EccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCC
Q psy2166 223 FEASLIPVGDQTMTVEFLYNGK-PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301 (805)
Q Consensus 223 l~C~~~~~~~p~~~i~W~k~g~-~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~ 301 (805)
|.|.+ .|+|.|+|.|+|.|. ++... .. ..+...+|.|.+++.+|+|.|.|.|.|..|.......+.|.
T Consensus 261 LECfA--~G~P~P~i~W~k~~g~~~~~r--~~--~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~----- 329 (1051)
T KOG3513|consen 261 LECFA--LGNPTPQIKWRKVDGKPPPRR--AT--YSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVY----- 329 (1051)
T ss_pred EEEEe--cCCCCCcEEEEeCCCCCCCcc--ee--eeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEe-----
Confidence 99988 899999999999776 33322 22 22233589999999999999999999999999999999988
Q ss_pred CCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCc---eEEEEeCcEEEEEEcccCcCCceEEE
Q psy2166 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNR---VKMVSDFGFVVMDIAYVQSHDSGEYV 378 (805)
Q Consensus 302 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~~~l~i~~v~~~d~G~Y~ 378 (805)
.+|.+...+.+.. +..|++++|.|.+. |.|.|.|.|++||.++....+ ..+..+ +|.|.++...|+|.|.
T Consensus 330 a~P~w~~~~~d~~-~~~gs~v~~eC~a~--g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g----~L~is~v~~~dsg~YQ 402 (1051)
T KOG3513|consen 330 APPYWLQKPQDTE-ADTGSNVTLECKAS--GKPNPTVKWLKNGEPLEPAERDPRYKIDDG----TLIISNVQESDSGVYQ 402 (1051)
T ss_pred cCchhhcccceeE-ecCCCCeEEEEEec--CCCCCceEEeeCCeecCccCCCcceEEeCC----EEEEEecccccCeEEE
Confidence 7889988888877 88999999999998 999999999999999986655 444332 6999999999999999
Q ss_pred EEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEE
Q psy2166 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 458 (805)
Q Consensus 379 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (805)
|.|+|..|...+++.|.|..
T Consensus 403 C~A~Nk~G~i~anA~L~V~a------------------------------------------------------------ 422 (1051)
T KOG3513|consen 403 CIAENKYGTIYANAELKVLA------------------------------------------------------------ 422 (1051)
T ss_pred eeeecccceEeeeeEEEEEc------------------------------------------------------------
Confidence 99999999999999999963
Q ss_pred EEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecC-CCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCE
Q psy2166 459 ARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQI-SDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGK 537 (805)
Q Consensus 459 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~ 537 (805)
.+|.|...+ .....+..|.++.|.|.+. +.|.|.++|.|+++
T Consensus 423 -----------------------------------~~P~f~~~p~~~~~~a~~g~~v~i~C~~~--asP~p~~~W~k~~~ 465 (1051)
T KOG3513|consen 423 -----------------------------------SAPVFPLNPVERKVMAVVGGTVTIDCKPF--ASPKPKVSWLKGGE 465 (1051)
T ss_pred -----------------------------------cCCCCCCCccceEEEEEeCCeEEEeeccC--CCCcceEEEEcCCc
Confidence 445555543 4444588999999999999 78999999999999
Q ss_pred EccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeeeeecCC------------------
Q psy2166 538 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ------------------ 599 (805)
Q Consensus 538 ~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~------------------ 599 (805)
.+..+.|+.+..++. |.|.+++.+|+|.|+|.|.|..|.....+.|.|...+.+++.+.
T Consensus 466 ~~~~~~r~~i~edGt---L~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~sh 542 (1051)
T KOG3513|consen 466 KLLQSGRIRILEDGT---LEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASH 542 (1051)
T ss_pred ccccCceEEECCCCc---EEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeeccc
Confidence 888888999888876 99999999999999999999999999999999999888766321
Q ss_pred ----CCeEEEEECCEEcc---CCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeecc
Q psy2166 600 ----LPEVEWFYNGKKLP---HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT 665 (805)
Q Consensus 600 ----~p~v~W~~~g~~l~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 665 (805)
...+.|.+||..+. .++++.+....+...|+|.+++..|+|.|.|.|.-...+.++.+.|.|..+|
T Consensus 543 D~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpP 615 (1051)
T KOG3513|consen 543 DPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPP 615 (1051)
T ss_pred CCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCC
Confidence 23899999999874 3445554443333679999999999999999999999999999999999876
No 3
>KOG4221|consensus
Probab=100.00 E-value=1.8e-43 Score=381.93 Aligned_cols=534 Identities=21% Similarity=0.290 Sum_probs=382.2
Q ss_pred cCCCCCCC-CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC--CceEEEecCcEEEEEEcc
Q psy2166 54 RQPSGPEE-TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--SRFKTTADFGFVTLDLTE 130 (805)
Q Consensus 54 c~~~~~~~-~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~--~~~~~~~~~~~~~L~I~~ 130 (805)
|+...... ...+-.|++.+. + +.+|..+.|.|.....+.+.+.|+|.|||..+... .|.++-.++ +|.|.+
T Consensus 29 ~q~~~~~~~~~~~~~f~~ep~-d--~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNg---Sl~i~~ 102 (1381)
T KOG4221|consen 29 CQTTGKSIQANTPLQFLLEPS-D--AMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNG---SLYISS 102 (1381)
T ss_pred hhcchhhhhccCcceEEeccc-c--cccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCC---ceeEee
Confidence 65554433 334445555555 3 38999999999998655568899999999877644 344444444 677877
Q ss_pred ccc-----CCCeEEEEEEEeC-CeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy2166 131 VYD-----RDQGIYTCRAWNL-AGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP 203 (805)
Q Consensus 131 ~~~-----~D~G~Y~C~a~n~-~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (805)
+.. -|+|.|+|.|.-. .|.. +..+.|.+. ..+
T Consensus 103 v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a-----------------------------------------~~~ 141 (1381)
T KOG4221|consen 103 VLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALA-----------------------------------------GLA 141 (1381)
T ss_pred ecccccccccCceEEEEEEccccceeecceEEEEec-----------------------------------------ccC
Confidence 766 7899999999865 3433 334444442 234
Q ss_pred ceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcC
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 283 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 283 (805)
.|...+.+. .+..|+.+.|.|.+ .+.|.+.+.|.||..++....++ +...++ .|.|.++++.|.|.|+|.+.++
T Consensus 142 ~f~~~~~~~-t~~~g~ta~f~c~v--n~e~~p~i~w~kn~~pl~~~~r~-i~lpsG--~L~I~~~qp~d~g~yrc~vt~g 215 (1381)
T KOG4221|consen 142 DFALQPEST-TLLYGQTALFSCEV--NAEPVPTIMWLKNDQPLPLDSRV-IVLPSG--ALEISGLQPSDTGEYRCVVTGG 215 (1381)
T ss_pred ccccCccce-eEecCCcEEEEEEE--cCccCceeEEecccccccCCCcE-EEcCCC--cEEecccccCCCceEEEEEecC
Confidence 455555555 38899999999999 67888899999999988877743 344444 6999999999999999999986
Q ss_pred Cee-EEEEEEEEEeccCCCC-CCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcE
Q psy2166 284 WGQ-AEISVNLECVDKSKGQ-PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361 (805)
Q Consensus 284 ~g~-~~~~~~l~v~~~~~~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~ 361 (805)
... .+..+.|+|...+... ...|...+... .+.+|+++.|.|.+. +.|.|.|.|.|||..|.-.. +.+... +.
T Consensus 216 ~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~-~v~~g~~v~leCvvs--~~p~p~v~Wlrng~~i~~ds-~rivl~-g~ 290 (1381)
T KOG4221|consen 216 ASQRTSNEAELTVLSDPGALNKLVFLDEPSNA-VVVEGDDVVLECVVS--GVPKPSVKWLRNGEKISVDS-YRIVLV-GG 290 (1381)
T ss_pred CcCCccceeEEEecCCcccccceeeecCCCcc-ccccCCcEEEEEEec--CCCCCceEEeeCCeeeeecc-eEEEEe-cc
Confidence 533 3555666665222111 12233344444 488999999999998 99999999999999987543 333322 22
Q ss_pred EEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceee
Q psy2166 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFIT 441 (805)
Q Consensus 362 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (805)
..|.|.+++.+|+|.|+|+|.|......+++.|.|.
T Consensus 291 ~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~-------------------------------------------- 326 (1381)
T KOG4221|consen 291 SSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL-------------------------------------------- 326 (1381)
T ss_pred cceEEeccccccCceEEEEecCCCcccccceEEEEE--------------------------------------------
Confidence 358899999999999999999987777788888875
Q ss_pred eecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEe
Q psy2166 442 QISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLT 521 (805)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~ 521 (805)
.+|.|...+.... ..++.++.|.|.+.
T Consensus 327 ----------------------------------------------------a~P~~~~~p~~l~-A~e~~die~ec~~~ 353 (1381)
T KOG4221|consen 327 ----------------------------------------------------APPGFTKAPTTLV-AHESMDIEFECPVS 353 (1381)
T ss_pred ----------------------------------------------------cCCCCCCCCccee-eeeccceeEeCCCC
Confidence 4566666655554 77899999999999
Q ss_pred eCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeeee------
Q psy2166 522 PVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI------ 595 (805)
Q Consensus 522 ~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~------ 595 (805)
|.|.|.+.|+|||..+..++.+.+..+++ |.|.-+-..|.|.|+|.+.|..|.....+.|.|...+...
T Consensus 354 --g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~ 428 (1381)
T KOG4221|consen 354 --GKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLP 428 (1381)
T ss_pred --CCCcceEEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccc
Confidence 77999999999999988777777666555 5666566799999999999999999988888665542210
Q ss_pred -------------------------ecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCC
Q psy2166 596 -------------------------LESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKY 650 (805)
Q Consensus 596 -------------------------~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 650 (805)
...+.+.++|++..... ...+......-+ ..+.+.++...-...++|.|.|..
T Consensus 429 sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~-~rer~~~tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~ 506 (1381)
T KOG4221|consen 429 SAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGD-VRERLQNTSSPG-IQVTVQNLSPLTMYFFRVRAKNEA 506 (1381)
T ss_pred cCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCc-hhhhheeccCCc-eEEEeeecccceeEEEEEeccCcc
Confidence 11122366666422111 111111112222 456677777766677778888999
Q ss_pred cceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCe----EE
Q psy2166 651 GSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM----TV 726 (805)
Q Consensus 651 g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~----~v 726 (805)
|+...+..|.|...| .+|. .+..+....++|.+. ..|++ .|
T Consensus 507 g~g~sS~pLkV~t~p------------------------Egp~---------~~~a~ats~~ti~v~--WepP~~~n~~I 551 (1381)
T KOG4221|consen 507 GSGESSAPLKVTTQP------------------------EGPV---------QLQAYATSPTTILVT--WEPPPFGNGPI 551 (1381)
T ss_pred cCCccCCceEEecCC------------------------CCCc---------cccccccCcceEEEE--ecCCCCCCCCc
Confidence 999999999998643 1222 244556678899998 77777 89
Q ss_pred EEEECCEEcc-CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 727 EFLYNGKPIE-ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 727 ~W~~~g~~l~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
+|||...... .+....+.. ....++|+++...+.-.|.|+|.|.+|....+..+.|.-
T Consensus 552 ~~yk~~ys~~~~~~~~~~~~--n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~T 610 (1381)
T KOG4221|consen 552 TGYKLFYSEDDTGKELRVEN--NATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRT 610 (1381)
T ss_pred eEEEEEEEcCCCCceEEEec--CccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEe
Confidence 9999776555 233333333 334799999999999999999999999998888888865
No 4
>KOG4222|consensus
Probab=100.00 E-value=2.3e-42 Score=371.30 Aligned_cols=450 Identities=26% Similarity=0.397 Sum_probs=351.1
Q ss_pred CCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC--cEEEEEEcC-eEEEEEcCC--CC
Q psy2166 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH--RIRTVHAFG-MVVLEILGT--KI 270 (805)
Q Consensus 196 ~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~--~~~~~~~~~-~~~L~i~~~--~~ 270 (805)
......+|.|+..+.+.. +..|+.++|.|.+ .|.|.|+|+|||+|+...... ..++...++ -..|.+..- ..
T Consensus 25 ~r~qd~~p~iiehp~d~v-vs~~~patlnc~a--sG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~ 101 (1281)
T KOG4222|consen 25 LRAQDQPPRIIEHPHDLV-VSKGEPATLNCKA--SGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAG 101 (1281)
T ss_pred cccccCCCceEecchhhh-ccCCCCceeecCC--CCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCccc
Confidence 345557899999998874 8899999999988 799999999999996543221 112223333 223333211 12
Q ss_pred cccEEEEEEEEcCCeeE-EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEcc-
Q psy2166 271 EDTGVYTCRATNKWGQA-EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIF- 348 (805)
Q Consensus 271 ~d~G~Y~C~~~n~~g~~-~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~- 348 (805)
.|.|.|+|++.|..|.. +....|.+.. .+-.|...+.+.. +..|+.+.|.|.-. .+.|.+.+.|.|+|+++.
T Consensus 102 ~d~G~y~cvasn~~g~avSr~a~L~vav----lrddfrv~prd~~-~a~ge~avlEcgpP-~ghpeptvSw~Kdg~pl~~ 175 (1281)
T KOG4222|consen 102 HDHGVYSCVASNRLGEAVSRGASLIVAV----LRDDFRVSPRDVQ-AAVGEEAVLECGPP-RGHPEPTVSWVKDGKPLDH 175 (1281)
T ss_pred CCCceeEeeecCccceeeecCceEEEEE----echhcccCccccc-ccccceeEEeccCC-CCCCCCcceeecCCCcccc
Confidence 38999999999998876 3444444432 3445566666643 77899999999875 589999999999999987
Q ss_pred -CCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEE-EEEEEEecccccccCCChhHHHHHHHhhhccCCCC
Q psy2166 349 -HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTR-ATIKCFGKGGVYLDSLQPESLARIRELENAQGQQP 426 (805)
Q Consensus 349 -~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 426 (805)
....+.++.++ .|.|.+++..|.|.|.|++.|.+|...+. ++|+|.
T Consensus 176 ~~~~~~~lisgG---~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~----------------------------- 223 (1281)
T KOG4222|consen 176 YDVPIIALISGG---NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ----------------------------- 223 (1281)
T ss_pred ccceeEEEecCC---cEEEeccccCCCceeeeeecccccccccccceeeec-----------------------------
Confidence 33344444444 38899999999999999999999987654 777764
Q ss_pred ccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcc
Q psy2166 427 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVT 506 (805)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 506 (805)
++|.|...+.+..
T Consensus 224 -------------------------------------------------------------------e~P~f~~rp~~~~ 236 (1281)
T KOG4222|consen 224 -------------------------------------------------------------------EKPWFWKRPKDLA 236 (1281)
T ss_pred -------------------------------------------------------------------cCCccccccccce
Confidence 6677777777765
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
+..|..+.+.|.+. |.|.|.+.|.|++..++.. |+.+..+.. +|.|..++..|.|.|.|.|.|..|.....+.|
T Consensus 237 -v~~g~~~~f~c~v~--GdP~P~Vrwkk~~~~~P~~-ry~i~~d~q--tl~i~r~tp~deg~y~C~a~n~vG~l~asa~l 310 (1281)
T KOG4222|consen 237 -VLVGAAAEFDCRVG--GDPQPTVRWKKDDPSLPRS-RYSILDDTQ--TLRIDRVTPTDEGTYVCPAENLVGGLEASATL 310 (1281)
T ss_pred -eecccccccccccC--CCCCCceeeeccCCCCCcc-ceeeeeccc--cccccccCCCcccceeeeccccccccccccce
Confidence 88999999999999 8999999999988877765 676666533 49999999999999999999999999999999
Q ss_pred EEeeeeee--------------------eecCCCCeEEEEECCEE-c-------cCCCceEEEeeCCEEEEEeccCCCCC
Q psy2166 587 KCVSKTNL--------------------ILESQLPEVEWFYNGKK-L-------PHGHRYRTFHDFGIVILDILYCYEEN 638 (805)
Q Consensus 587 ~V~~~~~~--------------------~~~~~~p~v~W~~~g~~-l-------~~~~~~~~~~~~~~~~L~i~~~~~~d 638 (805)
+|.+++.+ +.+.|.|.+.|.+.|.. + ..+.+..+...+ .|+|.++...|
T Consensus 311 tV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d 387 (1281)
T KOG4222|consen 311 TVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSD 387 (1281)
T ss_pred EEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCC---Ccccccccccc
Confidence 99988764 34568899999997642 2 233444444444 49999999999
Q ss_pred cEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEee
Q psy2166 639 SGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 718 (805)
Q Consensus 639 ~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~ 718 (805)
.|.|.|...+.+|.......+.+.+.-. ....+|.|...+.+. +..+|..+.|.|.++
T Consensus 388 ~g~Yvcq~~~~~~ss~~~a~~~qt~~~~--------------------~~rPpp~i~~g~~nQ-tl~v~s~a~l~c~at- 445 (1281)
T KOG4222|consen 388 EGYYVCQTQTSAGSSLTKAYLEQTDVLT--------------------DSRPPPIIEQGPANQ-TLPVGSTASLPCSAT- 445 (1281)
T ss_pred cceEeecccccccccccceeEEEEeeec--------------------cCCCCceeeeccccc-ccccCcccccChhhh-
Confidence 9999999999999988888777765211 013567888899999 899999999999999
Q ss_pred cCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEe
Q psy2166 719 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 719 ~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 787 (805)
|.|.+.+.|+++|..+...+.-......+ .|+|.+...-|.|.|+|+|.+..|+..-+++|.|...
T Consensus 446 -g~P~p~i~wl~dg~~v~~~d~~~s~~~~~--~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~ 511 (1281)
T KOG4222|consen 446 -GAPTPNISWLKDGCNVMNPDSRISQQEIG--SLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKA 511 (1281)
T ss_pred -CCCCCCchhhhcccccccCCcccceeeec--eeeeeeeecCCCcceeeeccCcccccccceeeEhhhc
Confidence 99999999999998777655333233323 7999999999999999999999999999999999874
No 5
>KOG4221|consensus
Probab=100.00 E-value=1.3e-38 Score=344.39 Aligned_cols=478 Identities=21% Similarity=0.251 Sum_probs=338.1
Q ss_pred chhhhhHHhhhh-----hhcCccccCCCCCC-----------CCcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCc
Q psy2166 35 AAGLEKVQEVEH-----ALAGKYQRQPSGPE-----------ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNL 98 (805)
Q Consensus 35 ~~g~~~i~~~~~-----~d~g~y~c~~~~~~-----------~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~ 98 (805)
.+|.+.|+++.. .+.|.|+|.+.... .....+.|.... .+..+..|+.+.|.|.+. +.|.+
T Consensus 94 sNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~-~~~t~~~g~ta~f~c~vn--~e~~p 170 (1381)
T KOG4221|consen 94 SNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQP-ESTTLLYGQTALFSCEVN--AEPVP 170 (1381)
T ss_pred cCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCc-cceeEecCCcEEEEEEEc--CccCc
Confidence 457777887777 88999999876552 112344444333 367899999999999999 57888
Q ss_pred eEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeE-EEEEEEEEeccccccccccCCCCcchh
Q psy2166 99 KIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGL 177 (805)
Q Consensus 99 ~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~ 177 (805)
.+.|.||.+++..++|+..-.+| .|.|.+++..|.|.|+|.+++..... ...+.|+|...+...
T Consensus 171 ~i~w~kn~~pl~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~------------ 235 (1381)
T KOG4221|consen 171 TIMWLKNDQPLPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGAL------------ 235 (1381)
T ss_pred eeEEecccccccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccc------------
Confidence 99999999999988887777776 79999999999999999999874332 445667776322211
Q ss_pred hhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEE
Q psy2166 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 257 (805)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~ 257 (805)
..-.|...+... .+.+|+.+.|.|.+ .+.|.|+|.|.|||..|.-.. +++...
T Consensus 236 -----------------------~~~~fl~~p~~~-~v~~g~~v~leCvv--s~~p~p~v~Wlrng~~i~~ds-~rivl~ 288 (1381)
T KOG4221|consen 236 -----------------------NKLVFLDEPSNA-VVVEGDDVVLECVV--SGVPKPSVKWLRNGEKISVDS-YRIVLV 288 (1381)
T ss_pred -----------------------cceeeecCCCcc-ccccCCcEEEEEEe--cCCCCCceEEeeCCeeeeecc-eEEEEe
Confidence 112244555544 48899999999999 799999999999999997665 433333
Q ss_pred cCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcE
Q psy2166 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELK 337 (805)
Q Consensus 258 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~ 337 (805)
+...|.|.+++.+|+|.|+|.|.|.......++.|.|. .+|.|...+.... ..++.++.|.|.+. +.|.+.
T Consensus 289 -g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~-----a~P~~~~~p~~l~-A~e~~die~ec~~~--g~p~p~ 359 (1381)
T KOG4221|consen 289 -GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL-----APPGFTKAPTTLV-AHESMDIEFECPVS--GKPIPT 359 (1381)
T ss_pred -cccceEEeccccccCceEEEEecCCCcccccceEEEEE-----cCCCCCCCCccee-eeeccceeEeCCCC--CCCcce
Confidence 33579999999999999999999966666677777776 5688877776665 77899999999998 789999
Q ss_pred EEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHH
Q psy2166 338 VEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRE 417 (805)
Q Consensus 338 v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~ 417 (805)
+.|+|||..+..+..+++..++. |.|..+-..|.|.|.|.++|..|.....+.+.|...+- +..+
T Consensus 360 v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~-~~~s----------- 424 (1381)
T KOG4221|consen 360 VRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA-SASS----------- 424 (1381)
T ss_pred EEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheeccCCc-cccc-----------
Confidence 99999999988877777766654 66777789999999999999999999988886643210 0000
Q ss_pred hhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCc
Q psy2166 418 LENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPK 497 (805)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~ 497 (805)
......++.
T Consensus 425 -----------------------------------------------------------------------~~~~sap~~ 433 (1381)
T KOG4221|consen 425 -----------------------------------------------------------------------DLLPSAPRD 433 (1381)
T ss_pred -----------------------------------------------------------------------CccccCCcc
Confidence 000012222
Q ss_pred eEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEE-CCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEE--EEE
Q psy2166 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC--RAT 574 (805)
Q Consensus 498 ~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~ 574 (805)
+...+.... +.. -+....|.. +.+.+.++|++ ++..+. . |.......+ ..+++.+ ...++.|.| +|.
T Consensus 434 lv~~~~~sr-fi~-~tw~~p~~~---~g~i~~~~v~~~~~~~~r-e-r~~~tss~g-~~~tv~n--l~p~t~Y~~rv~A~ 503 (1381)
T KOG4221|consen 434 LVANLVSSR-FIQ-LTWRPPAQI---SGNISTYTVFYKVEGDVR-E-RLQNTSSPG-IQVTVQN--LSPLTMYFFRVRAK 503 (1381)
T ss_pred eecccccce-eEE-EeecCcccc---CCCcceEEEEEecCCchh-h-hheeccCCc-eEEEeee--cccceeEEEEEecc
Confidence 222222111 111 111255633 45667899985 333332 1 222222223 4566665 455777755 556
Q ss_pred cCCcceEEEEEEEEeeeee--------------eeecC-CCC----eEEEEECCEEccCCCceEEEeeCCEEEEEeccCC
Q psy2166 575 NKYGSDVTKASLKCVSKTN--------------LILES-QLP----EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY 635 (805)
Q Consensus 575 n~~g~~~~~~~l~V~~~~~--------------~~~~~-~~p----~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~ 635 (805)
|.+|....++.|.|..++. +.+.+ +++ .++|||......+.+ ....-+.+...++|.++.
T Consensus 504 n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~-~~~~~~~n~~e~ti~gL~ 582 (1381)
T KOG4221|consen 504 NEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTG-KELRVENNATEYTINGLE 582 (1381)
T ss_pred CcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCC-ceEEEecCccEEEeecCC
Confidence 9999999999999987762 11111 222 788888765554222 233334455679999999
Q ss_pred CCCcEEEEEEEEeCCcceEEEEEEEEee
Q psy2166 636 EENSGVYECRATNKYGSDVTKASLKCVS 663 (805)
Q Consensus 636 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 663 (805)
..+...|+|+|.|.+|...++..+.|..
T Consensus 583 k~TeY~~~vvA~N~~G~g~sS~~i~V~T 610 (1381)
T KOG4221|consen 583 KYTEYSIRVVAYNSAGSGVSSADITVRT 610 (1381)
T ss_pred CccceEEEEEEecCCCCCCCCCceEEEe
Confidence 9999999999999999999999888874
No 6
>KOG4222|consensus
Probab=100.00 E-value=6.5e-38 Score=337.17 Aligned_cols=441 Identities=25% Similarity=0.385 Sum_probs=329.3
Q ss_pred CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC---ceEEEecCcEEEEEEcc--cccCCC
Q psy2166 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS---RFKTTADFGFVTLDLTE--VYDRDQ 136 (805)
Q Consensus 62 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~---~~~~~~~~~~~~L~I~~--~~~~D~ 136 (805)
...+|.++..+. ++.+..|++++|.|.++ |.|.|+|+|+|+|+....+. +..+..++...-|.+.. -...|.
T Consensus 28 qd~~p~iiehp~-d~vvs~~~patlnc~as--G~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~ 104 (1281)
T KOG4222|consen 28 QDQPPRIIEHPH-DLVVSKGEPATLNCKAS--GDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDH 104 (1281)
T ss_pred ccCCCceEecch-hhhccCCCCceeecCCC--CCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCC
Confidence 345666666555 77889999999999999 79999999999997554332 22223333322333221 112399
Q ss_pred eEEEEEEEeCCeeEEE-EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccccc
Q psy2166 137 GIYTCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNL 215 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 215 (805)
|.|+|+|+|..|...+ ...|.|... +-.|...++++ .+
T Consensus 105 G~y~cvasn~~g~avSr~a~L~vavl----------------------------------------rddfrv~prd~-~~ 143 (1281)
T KOG4222|consen 105 GVYSCVASNRLGEAVSRGASLIVAVL----------------------------------------RDDFRVSPRDV-QA 143 (1281)
T ss_pred ceeEeeecCccceeeecCceEEEEEe----------------------------------------chhcccCcccc-cc
Confidence 9999999999888644 455555432 12344555553 57
Q ss_pred CCCceEEEEEEEeeCCCCCeEEEEEECCEEccC--CCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeE-EEEEE
Q psy2166 216 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA--SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVN 292 (805)
Q Consensus 216 ~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~ 292 (805)
..|+.+.|.|.- +.+.|.+.+.|.|+|+++.. ...+.++.. | .|.|.++...|+|.|.|++.|..|.. +....
T Consensus 144 a~ge~avlEcgp-P~ghpeptvSw~Kdg~pl~~~~~~~~~lisg-G--~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~ 219 (1281)
T KOG4222|consen 144 AVGEEAVLECGP-PRGHPEPTVSWVKDGKPLDHYDVPIIALISG-G--NLLISNVRKSDEGTYACVATNMVGERESIPAR 219 (1281)
T ss_pred cccceeEEeccC-CCCCCCCcceeecCCCccccccceeEEEecC-C--cEEEeccccCCCceeeeeecccccccccccce
Confidence 899999999964 46899999999999999873 333333333 3 59999999999999999999998875 55667
Q ss_pred EEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcC
Q psy2166 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH 372 (805)
Q Consensus 293 l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~ 372 (805)
+.|. .+|.|...+.... +..|..+.+.|.+. |.|.|.+.|.+++-.+.. .++.+..+.. +|.|.++...
T Consensus 220 lsv~-----e~P~f~~rp~~~~-v~~g~~~~f~c~v~--GdP~P~Vrwkk~~~~~P~-~ry~i~~d~q--tl~i~r~tp~ 288 (1281)
T KOG4222|consen 220 LSVQ-----EKPWFWKRPKDLA-VLVGAAAEFDCRVG--GDPQPTVRWKKDDPSLPR-SRYSILDDTQ--TLRIDRVTPT 288 (1281)
T ss_pred eeec-----cCCccccccccce-eecccccccccccC--CCCCCceeeeccCCCCCc-cceeeeeccc--cccccccCCC
Confidence 7777 6788888777776 88899999999997 999999999997766653 3555555533 6899999999
Q ss_pred CceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCC
Q psy2166 373 DSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEG 452 (805)
Q Consensus 373 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (805)
|.|.|.|.+.|..|.....+.++|+
T Consensus 289 deg~y~C~a~n~vG~l~asa~ltV~------------------------------------------------------- 313 (1281)
T KOG4222|consen 289 DEGTYVCPAENLVGGLEASATLTVQ------------------------------------------------------- 313 (1281)
T ss_pred cccceeeeccccccccccccceEEe-------------------------------------------------------
Confidence 9999999999999999999999885
Q ss_pred ceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEE
Q psy2166 453 QSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW 532 (805)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W 532 (805)
.+|.|...+.+.. +..|..++|.|.+. |.|.|.+.|
T Consensus 314 -----------------------------------------apP~f~kkp~dq~-v~lg~~vt~pc~~~--gnP~PavfW 349 (1281)
T KOG4222|consen 314 -----------------------------------------APPSFGKKPRDQK-VALGGTVTFPCETL--GNPPPAVFW 349 (1281)
T ss_pred -----------------------------------------cCcccccccCccc-cccCceEEeeeecC--CCCCcceEE
Confidence 5666777666665 78899999999999 889999999
Q ss_pred EECCEEc--c------CCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEee------eeeeee--
Q psy2166 533 FYNGKKL--P------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVS------KTNLIL-- 596 (805)
Q Consensus 533 ~~~g~~l--~------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------~~~~~~-- 596 (805)
.|.|... . .+.+..+...+ .|+|.+++..|.|.|.|...+..|....-+.+.+.. ++.+++
T Consensus 350 ~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g 426 (1281)
T KOG4222|consen 350 LKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQG 426 (1281)
T ss_pred eccCcceecccCCCCCcCccceecCCC---CcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeec
Confidence 9987642 1 22333333333 599999999999999999998888876655555432 222221
Q ss_pred -------------------cCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2166 597 -------------------ESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 657 (805)
Q Consensus 597 -------------------~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 657 (805)
..|.|.+.|+++|-.+........... ...|+|.+....|.|.|+|.|.+..|+...++
T Consensus 427 ~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~--~~~l~i~dl~~~DtG~YTc~as~~~ges~wSa 504 (1281)
T KOG4222|consen 427 PANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQE--IGSLRIRDLKGPDTGRYTCIASDESGESTWSA 504 (1281)
T ss_pred ccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceee--eceeeeeeeecCCCcceeeeccCcccccccce
Confidence 235679999999877654332211121 23499999999999999999999999999999
Q ss_pred EEEEeecc
Q psy2166 658 SLKCVSKT 665 (805)
Q Consensus 658 ~l~V~~~p 665 (805)
+|.|.+..
T Consensus 505 tl~v~~~~ 512 (1281)
T KOG4222|consen 505 TLTVEKAG 512 (1281)
T ss_pred eeEhhhcC
Confidence 99998643
No 7
>KOG4194|consensus
Probab=99.96 E-value=9.3e-28 Score=242.51 Aligned_cols=283 Identities=22% Similarity=0.375 Sum_probs=221.3
Q ss_pred CCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC-----cEEEEEEc--------CeEEEEE
Q psy2166 199 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH-----RIRTVHAF--------GMVVLEI 265 (805)
Q Consensus 199 ~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~-----~~~~~~~~--------~~~~L~i 265 (805)
+...|++...|.... ...|+.++|+|.+...+..+.++.|.++.+.+..-. .+.....+ -...|.+
T Consensus 500 DspkpqI~~qPe~~~-al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L 578 (873)
T KOG4194|consen 500 DSPKPQIVTQPETVS-ALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHL 578 (873)
T ss_pred CCCCcceecCchHhh-hhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeee
Confidence 445677887777664 678999999999865456678999999877443211 11111101 1368999
Q ss_pred cCCCCcccEEEEEEEEcCCeeE-EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECC
Q psy2166 266 LGTKIEDTGVYTCRATNKWGQA-EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNG 344 (805)
Q Consensus 266 ~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g 344 (805)
.++...|+|.|.|++.|..|.. +..+.++|. ..|.|...|.+.. +..|+.+.|.|.+. |.|.|.|.|.|+|
T Consensus 579 ~nVt~td~grYQCVvtN~FGStysqk~KltV~-----~~PsFtktP~dlt-l~tg~mArl~CaAt--G~P~PeIawqkdg 650 (873)
T KOG4194|consen 579 DNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN-----QAPSFTKTPEDLT-LRTGQMARLECAAT--GHPRPEIAWQKDG 650 (873)
T ss_pred eeeecccCceEEEEEecccCcchhheeEEEee-----ccCccccCcccce-eecccceeeeeecc--CCCCcceeehhcC
Confidence 9999999999999999999876 666778877 5788888888876 89999999999998 9999999999987
Q ss_pred EE-cc--CCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhc
Q psy2166 345 KP-IF--HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENA 421 (805)
Q Consensus 345 ~~-l~--~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~ 421 (805)
-. .. ...+..+..++. .+.|.++..+|.|.|+|.|.|.+|.....+++.|.+
T Consensus 651 gtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e----------------------- 705 (873)
T KOG4194|consen 651 GTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE----------------------- 705 (873)
T ss_pred CCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEec-----------------------
Confidence 55 33 234556655555 577999999999999999999999999999999854
Q ss_pred cCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEec
Q psy2166 422 QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQ 501 (805)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 501 (805)
.|.|..+
T Consensus 706 -------------------------------------------------------------------------~p~f~~P 712 (873)
T KOG4194|consen 706 -------------------------------------------------------------------------TPSFSIP 712 (873)
T ss_pred -------------------------------------------------------------------------CCccccc
Confidence 4566667
Q ss_pred CCCcccccCCCeEEEEEEEeeCCCCC-cEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 502 ISDVTQLKEGQSAHFEARLTPVTDPD-LVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 502 ~~~~~~v~~G~~v~L~C~v~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
+.+.. +..|+++.|.|.+. +.|. |...|+|++++|.-..|..... +. -.|.+.+...+|+|.|+|...|..|..
T Consensus 713 L~~~~-V~~get~vlqC~a~--~~~a~pr~~W~k~d~pil~t~rh~f~d-~d-Qllvv~~~~~~daG~yTcem~~~~~~~ 787 (873)
T KOG4194|consen 713 LEDQL-VVVGETLVLQCLAE--GAPADPRLEWFKEDKPILITERHTFPD-GD-QLLVVKENLVEDAGIYTCEMSNTLGTE 787 (873)
T ss_pred ccceE-EEecceEEEEEecC--CCCCCccccccCCCCceEEeecccCCC-CC-eEEEEEehhhhhcceEEEEEEeeccce
Confidence 77766 89999999999999 4454 9999999999885444433222 22 258888888999999999999999998
Q ss_pred EEEEEEEEeeeee
Q psy2166 581 VTKASLKCVSKTN 593 (805)
Q Consensus 581 ~~~~~l~V~~~~~ 593 (805)
.....+.+...+.
T Consensus 788 ~~~i~l~~~~~~~ 800 (873)
T KOG4194|consen 788 RIHICLLVYQKKK 800 (873)
T ss_pred eeEEEEEEeecCC
Confidence 8877777766554
No 8
>KOG4194|consensus
Probab=99.95 E-value=2.9e-27 Score=238.94 Aligned_cols=284 Identities=22% Similarity=0.358 Sum_probs=217.5
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC-----CCceEEEe-c-------CcEEEEEEc
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-----GSRFKTTA-D-------FGFVTLDLT 129 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~-----~~~~~~~~-~-------~~~~~L~I~ 129 (805)
..+|.++..+ .++....|++++|+|.+.+....+.++.|.+|++.... .-++.... . .-...|.+.
T Consensus 501 spkpqI~~qP-e~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~ 579 (873)
T KOG4194|consen 501 SPKPQIVTQP-ETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD 579 (873)
T ss_pred CCCcceecCc-hHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence 3455554444 36677789999999999865466778999998774331 11111111 0 013369999
Q ss_pred ccccCCCeEEEEEEEeCCeeEE-EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecc
Q psy2166 130 EVYDRDQGIYTCRAWNLAGETF-TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSE 208 (805)
Q Consensus 130 ~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 208 (805)
+|...|+|.|.|+++|..|+.. ..+.++|. ..|.|...
T Consensus 580 nVt~td~grYQCVvtN~FGStysqk~KltV~-----------------------------------------~~PsFtkt 618 (873)
T KOG4194|consen 580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN-----------------------------------------QAPSFTKT 618 (873)
T ss_pred eeecccCceEEEEEecccCcchhheeEEEee-----------------------------------------ccCccccC
Confidence 9999999999999999998864 46778875 45778888
Q ss_pred cccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEE-ccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeE
Q psy2166 209 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP-IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 287 (805)
Q Consensus 209 ~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~-l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~ 287 (805)
|.+.. +..|+.+.|.|.+ .|.|.|+|.|.|+|.. ++.....++........+.|.+++.+|.|.|+|.|.|.+|..
T Consensus 619 P~dlt-l~tg~mArl~CaA--tG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i 695 (873)
T KOG4194|consen 619 PEDLT-LRTGQMARLECAA--TGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI 695 (873)
T ss_pred cccce-eecccceeeeeec--cCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccce
Confidence 87774 8899999999988 8999999999998765 554433233322233478899999999999999999999999
Q ss_pred EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC-cEEEEEECCEEccCCCceEEEEeCcEEEEEE
Q psy2166 288 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE-LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDI 366 (805)
Q Consensus 288 ~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i 366 (805)
+..+++.|.+ .|.+..+..+.. +..|+++.|.|.+. +.|. |.+.|+|+++++.-..+..+..+++ .|.+
T Consensus 696 sanAtL~V~e-----~p~f~~PL~~~~-V~~get~vlqC~a~--~~~a~pr~~W~k~d~pil~t~rh~f~d~dQ--llvv 765 (873)
T KOG4194|consen 696 SANATLTVLE-----TPSFSIPLEDQL-VVVGETLVLQCLAE--GAPADPRLEWFKEDKPILITERHTFPDGDQ--LLVV 765 (873)
T ss_pred eeceEEEEec-----CCcccccccceE-EEecceEEEEEecC--CCCCCccccccCCCCceEEeecccCCCCCe--EEEE
Confidence 9999999985 445555566665 88999999999997 5555 9999999999987666665554444 5778
Q ss_pred cccCcCCceEEEEEEEeCceeeEEEEEEEEEeccc
Q psy2166 367 AYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGG 401 (805)
Q Consensus 367 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 401 (805)
.+...+|+|.|+|...|..|.......+.++.++.
T Consensus 766 ~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~ 800 (873)
T KOG4194|consen 766 KENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKK 800 (873)
T ss_pred EehhhhhcceEEEEEEeeccceeeEEEEEEeecCC
Confidence 88889999999999999999988888877776554
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.95 E-value=3.9e-26 Score=234.31 Aligned_cols=233 Identities=19% Similarity=0.202 Sum_probs=166.6
Q ss_pred ccCCCeEEEEEEEe---eCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEE
Q psy2166 508 LKEGQSAHFEARLT---PVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584 (805)
Q Consensus 508 v~~G~~v~L~C~v~---~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 584 (805)
+.+|+.+.|.|.+. ..|.|.++++|+|+|.... +.....++. .|.|.++..+|+|.|+|.|.|..|....++
T Consensus 38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g~--~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~ 112 (326)
T PHA02785 38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNGS--NMLILNPTQSDSGIYICITKNETYCDMMSL 112 (326)
T ss_pred hhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCCc--eEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence 67899999999972 1177889999999985321 222222222 377899999999999999999999888888
Q ss_pred EEEEeeeee-----------------eeecC----------CCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCC
Q psy2166 585 SLKCVSKTN-----------------LILES----------QLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637 (805)
Q Consensus 585 ~l~V~~~~~-----------------~~~~~----------~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~ 637 (805)
+|+|..... ..+.| +.|.++|++++. + .+.++..... ..|.|.+++.+
T Consensus 113 ~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~---~~L~i~~v~~~ 187 (326)
T PHA02785 113 NLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTP---GIITIEDVRKN 187 (326)
T ss_pred EEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCC---CeEEEeecChh
Confidence 888865321 12333 456999998652 3 3344433222 25999999999
Q ss_pred CcEEEEEEEEeCCcceEEE----EEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEE
Q psy2166 638 NSGVYECRATNKYGSDVTK----ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE 713 (805)
Q Consensus 638 d~G~Y~C~a~n~~g~~~~~----~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~ 713 (805)
|+|.|+|.|.|.+|..... +.|.|..+. .||.+. .|.+. .+..|+.++|.
T Consensus 188 d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~------------------------~pp~~~-~p~~~-~~~~G~~v~L~ 241 (326)
T PHA02785 188 DAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRI------------------------IPPTMQ-LPEGV-VTSIGSNLTIA 241 (326)
T ss_pred hCeEEEEEEEeccCCEEEeEEEEEEEEEeccC------------------------CCceec-CCCcE-EecCCCcEEEE
Confidence 9999999999998876543 345444311 456654 34555 78889999999
Q ss_pred EEEeecCCCC---eEEEEEECCEEccCCC-----CeEEEee-----C---cEEEEEEcCCCCCCCEEEEEEEEcCCccEE
Q psy2166 714 ASLIPVGDQT---MTVEFLYNGKPIEASH-----RIRTVHA-----F---GMVVLEILGTKIEDTGVYTCRATNKWGQAE 777 (805)
Q Consensus 714 C~~~~~g~p~---~~v~W~~~g~~l~~~~-----~~~~~~~-----~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 777 (805)
|.+. |.|. +.|.|+|||+.+...+ ++..... . ....|+|.+|+.+|+|.|+|.|.|.+|...
T Consensus 242 C~a~--g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 242 CRVS--LRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred EEEE--CCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 9999 8776 4899999999886432 2222111 0 135799999999999999999999885443
Q ss_pred E
Q psy2166 778 I 778 (805)
Q Consensus 778 ~ 778 (805)
.
T Consensus 320 ~ 320 (326)
T PHA02785 320 T 320 (326)
T ss_pred e
Confidence 3
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.95 E-value=2.7e-25 Score=228.02 Aligned_cols=257 Identities=19% Similarity=0.239 Sum_probs=176.1
Q ss_pred cCCCceEEEEEEEe---eCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEE
Q psy2166 215 LSEGEIAHFEASLI---PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291 (805)
Q Consensus 215 v~~g~~~~l~C~~~---~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~ 291 (805)
..+|+.+.|.|.+. ..|.|.++++|+|+|.... +.. ....+ ..|.|.++..+|+|.|+|.+.|..+....++
T Consensus 38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~-~~~~g-~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~ 112 (326)
T PHA02785 38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RII-PIDNG-SNMLILNPTQSDSGIYICITKNETYCDMMSL 112 (326)
T ss_pred hhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEE-EccCC-ceEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence 66899999999852 2478889999999985321 111 11222 3578999999999999999999988888888
Q ss_pred EEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEe---ecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcc
Q psy2166 292 NLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT---PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAY 368 (805)
Q Consensus 292 ~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~---~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~ 368 (805)
.|.|.... ++.+...+.+.. +.+|..+.|.|... ..+.|.+.|+|++++. + ...++....+ ..|.|.+
T Consensus 113 ~L~V~~~~---~~~~~~~~~~~~-~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~---~~L~i~~ 183 (326)
T PHA02785 113 NLTIVSVS---ESNIDLISYPQI-VNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTP---GIITIED 183 (326)
T ss_pred EEEEEecC---CCccceeeccce-ecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCC---CeEEEee
Confidence 88886542 232322222232 67899999999721 1257889999988653 3 2334333221 2699999
Q ss_pred cCcCCceEEEEEEEeCceeeEEEE----EEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeec
Q psy2166 369 VQSHDSGEYVCRAWNKYGEDFTRA----TIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQIS 444 (805)
Q Consensus 369 v~~~d~G~Y~C~a~n~~g~~~~~~----~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (805)
+..+|.|.|+|.|.|..|...... .|.|..+
T Consensus 184 v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~--------------------------------------------- 218 (326)
T PHA02785 184 VRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDR--------------------------------------------- 218 (326)
T ss_pred cChhhCeEEEEEEEeccCCEEEeEEEEEEEEEecc---------------------------------------------
Confidence 999999999999999887665433 3333210
Q ss_pred ceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCC
Q psy2166 445 DVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT 524 (805)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g 524 (805)
..||.+.. +. ...+..|+.++|.|.+. |
T Consensus 219 ------------------------------------------------~~pp~~~~-p~-~~~~~~G~~v~L~C~a~--g 246 (326)
T PHA02785 219 ------------------------------------------------IIPPTMQL-PE-GVVTSIGSNLTIACRVS--L 246 (326)
T ss_pred ------------------------------------------------CCCceecC-CC-cEEecCCCcEEEEEEEE--C
Confidence 13344322 22 33367899999999999 4
Q ss_pred CCC---cEEEEEECCEEccCCC-----ceEEEee-----C---CEEEEEEccCCCCCCEEEEEEEEcCCcceEE
Q psy2166 525 DPD---LVVEWFYNGKKLPHGH-----RYRTFHD-----F---GIVILDILYCYEENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 525 ~p~---~~v~W~~~g~~l~~~~-----~~~~~~~-----~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 582 (805)
.|. +.+.|+|||..|...+ ++..... . ....|.|.+++.+|+|.|+|.|.|..|....
T Consensus 247 ~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~~ 320 (326)
T PHA02785 247 RPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISKT 320 (326)
T ss_pred CCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceEe
Confidence 444 5899999999985421 2222110 0 1357999999999999999999998855443
No 11
>KOG3515|consensus
Probab=99.94 E-value=1.9e-25 Score=238.86 Aligned_cols=525 Identities=14% Similarity=0.157 Sum_probs=328.9
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEE-E
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT-S 153 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~ 153 (805)
+..+.+|+.|.|.|.+.+ ++|.+.|+|++.+..+. .|+....+. +|......++.-+.|.|++.|..+.... .
T Consensus 16 ~~~~~~g~~v~l~C~v~~-~pp~~~~eW~h~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~ 89 (741)
T KOG3515|consen 16 TVGLRLGEDVPLPCRVNS-NPPEIDVEWYHSTSGEH--GRYATIADP---TLVTTGDVRDTVAELNCRAFNSVGMPSRCP 89 (741)
T ss_pred ChhhccCCcceeeeecCC-CCCCcceEEEecCcccc--cccccccCC---ceeeecchhhhhhhhhhhhcccccCceecc
Confidence 348899999999999985 57888999999987776 566666554 6888888888899999999988544332 2
Q ss_pred EEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCC
Q psy2166 154 TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ 233 (805)
Q Consensus 154 ~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p 233 (805)
..+.|..++ .-....... ....+..+.+.|.....+.|
T Consensus 90 ~~l~v~~~p-----------------------------------------a~~~~~~e~-~~~~~~vvqi~c~~~~~~~P 127 (741)
T KOG3515|consen 90 MILDVDYPP-----------------------------------------ACLPELGEI-FQVDKGVVQIICSAKVAGRP 127 (741)
T ss_pred eeeccccCc-----------------------------------------cccccccch-hhhcCCeEEEEEeecCCCCC
Confidence 333333221 111111111 14577889999988778899
Q ss_pred CeEEEEEECCEEccCCCcEEEEEE--------cCeEEEEEcCCCCcccEEEEEEEEcC---CeeEEEEEEEEEeccCCCC
Q psy2166 234 TMTVEFLYNGKPIEASHRIRTVHA--------FGMVVLEILGTKIEDTGVYTCRATNK---WGQAEISVNLECVDKSKGQ 302 (805)
Q Consensus 234 ~~~i~W~k~g~~l~~~~~~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~~~n~---~g~~~~~~~l~v~~~~~~~ 302 (805)
.+++.|+.++........-..... ...+.|.+.....++.|.|+|.|.+. .+.......+.+.. .
T Consensus 128 ~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~----~ 203 (741)
T KOG3515|consen 128 NPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEA----P 203 (741)
T ss_pred CcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccc----c
Confidence 999999998876543221100010 12346778788899999999999984 33333333333322 1
Q ss_pred CCeEEec-CCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCc--EEEEEEcccCcCCceEEEE
Q psy2166 303 PPKFTSH-IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG--FVVMDIAYVQSHDSGEYVC 379 (805)
Q Consensus 303 ~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~--~~~l~i~~v~~~d~G~Y~C 379 (805)
...+... ......+.+|+.+.|.|.+.+ ++|.+.++|+++.+.+..+....-..++. ...+.+..-..++.-...|
T Consensus 204 ~~~~~~~~~~~~qsF~~g~~inlvc~~~g-g~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc 282 (741)
T KOG3515|consen 204 CKGIGITGAQEQQSFTEGQTINLVCNAQG-GNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKC 282 (741)
T ss_pred cccceecchhhcCcccccceEEEEehhhc-CCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhc
Confidence 2222222 222234889999999998875 99999999999987765542111111111 1122222222333446779
Q ss_pred EEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEE
Q psy2166 380 RAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA 459 (805)
Q Consensus 380 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (805)
.+.| .+ .....+.+.
T Consensus 283 ~a~n-~~--~~~~~tav~-------------------------------------------------------------- 297 (741)
T KOG3515|consen 283 KASN-LL--AASQITAVQ-------------------------------------------------------------- 297 (741)
T ss_pred cccC-cc--ccceeeecc--------------------------------------------------------------
Confidence 9987 11 111112221
Q ss_pred EEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEc
Q psy2166 460 RLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL 539 (805)
Q Consensus 460 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l 539 (805)
.+|.-.........+..|+...+.|...+ ++|.+.+.|+|+.+..
T Consensus 298 ----------------------------------~~~~~~~Ist~~~~ls~g~s~r~~c~~ss-s~p~~~i~w~~~~~~~ 342 (741)
T KOG3515|consen 298 ----------------------------------VKPTAVPISTSDSGLSSGRSARSSCVSSS-SKPPAHIAWYKDTKMP 342 (741)
T ss_pred ----------------------------------cccccccccCcccccccccccccceeccC-CCCccceeeeccCccc
Confidence 11111112222222788999999999886 7899999999977665
Q ss_pred cCCCceEEE--eeC--CEEEEEEccCCCCCCEEEEEEEEcCCcceEEEE--EEEEeeeeeee------------------
Q psy2166 540 PHGHRYRTF--HDF--GIVILDILYCYEENSGVYECRATNKYGSDVTKA--SLKCVSKTNLI------------------ 595 (805)
Q Consensus 540 ~~~~~~~~~--~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~--~l~V~~~~~~~------------------ 595 (805)
..+...... .++ ....+.+......|.|.|+|.|.|.......+. .|.+...+.+.
T Consensus 343 ~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~ 422 (741)
T KOG3515|consen 343 KGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAP 422 (741)
T ss_pred ccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCcccccc
Confidence 433222111 111 123356666778899999999998875544433 33333332210
Q ss_pred ----ecCCCCeEEEEECCEEccCCCc--eEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeecccccc
Q psy2166 596 ----LESQLPEVEWFYNGKKLPHGHR--YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL 669 (805)
Q Consensus 596 ----~~~~~p~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~ 669 (805)
-.+..+.+.|.+++.++..... +.+.... ..+.+.++.+.|.|.|.|.|+|..|.......+.+..
T Consensus 423 ~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~--~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~------ 494 (741)
T KOG3515|consen 423 LPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGA--GLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHT------ 494 (741)
T ss_pred CcccCCCcccchhheecceecccccCceEEeeccc--cccccceeeeccCCcceeeeccCCCceeeEEeecccc------
Confidence 1123569999999988865443 3333333 3355778999999999999999999998887777764
Q ss_pred ccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCC--eEEEEEECCEEccCCCC--eEEEe
Q psy2166 670 ESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT--MTVEFLYNGKPIEASHR--IRTVH 745 (805)
Q Consensus 670 ~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~g~~l~~~~~--~~~~~ 745 (805)
.|.+...-... ....|+++.+.|... +.|. -++.|.+.|.+...... .....
T Consensus 495 ---------------------sp~~~~~~~~~-~~~~~ns~~~~~~q~--~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~ 550 (741)
T KOG3515|consen 495 ---------------------SPHNHHLQDQV-EGATGNSVDGECMQD--EQPQDQQMHHEPRSGEPPSDQIDQDAPQQQ 550 (741)
T ss_pred ---------------------CCccccccccc-ccCCCCcccceeecc--ccccchhhhcccccCCCCcccccccccccc
Confidence 34444433334 677888899999998 5554 58999998876543211 11122
Q ss_pred eCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 746 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
......|.+.....-.+|.|.|.|.|..--+.....|.+
T Consensus 551 ~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~ 589 (741)
T KOG3515|consen 551 LMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKA 589 (741)
T ss_pred cCCccceeecccccccccceEEeecCCCCccccceEEEe
Confidence 223346888888888899999999992223333334444
No 12
>KOG3515|consensus
Probab=99.88 E-value=2.4e-21 Score=207.72 Aligned_cols=570 Identities=15% Similarity=0.092 Sum_probs=330.6
Q ss_pred hhhHHhhhhhhcCccccCCCCCCCCc----------CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCE
Q psy2166 38 LEKVQEVEHALAGKYQRQPSGPEETF----------AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGK 107 (805)
Q Consensus 38 ~~~i~~~~~~d~g~y~c~~~~~~~~~----------~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~ 107 (805)
.+..+.......++|.|.+.+..... -+|.-.... .......+..+.+.|.+...+.|.+.+.|..++.
T Consensus 60 ~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~-~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r 138 (741)
T KOG3515|consen 60 TLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPEL-GEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNR 138 (741)
T ss_pred ceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccc-cchhhhcCCeEEEEEeecCCCCCCcceeeeeccE
Confidence 34556666777889999877553221 122211111 1335567889999998877789999999999875
Q ss_pred ecCCCC--ceEEE--ec----CcEEEEEEcccccCCCeEEEEEEEeC---CeeEEEEEEEEEeccccccccccCCCCcch
Q psy2166 108 PLELGS--RFKTT--AD----FGFVTLDLTEVYDRDQGIYTCRAWNL---AGETFTSTTIYCSTKESLIERTQHPKGEEG 176 (805)
Q Consensus 108 ~i~~~~--~~~~~--~~----~~~~~L~I~~~~~~D~G~Y~C~a~n~---~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~ 176 (805)
-..... +.... .- .....|.+...+.+|.|.|+|.|.+. .+.......+.|..+.
T Consensus 139 ~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~-------------- 204 (741)
T KOG3515|consen 139 AELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPC-------------- 204 (741)
T ss_pred EeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccc--------------
Confidence 443221 11000 00 11235888888999999999999884 2222333333332211
Q ss_pred hhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE
Q psy2166 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256 (805)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~ 256 (805)
.............+.+|+.+.|.|.+. .+.|.++++||++...+..........
T Consensus 205 -------------------------~~~~~~~~~~~qsF~~g~~inlvc~~~-gg~P~~~~~w~~~s~~~~~~sl~~~~~ 258 (741)
T KOG3515|consen 205 -------------------------KGIGITGAQEQQSFTEGQTINLVCNAQ-GGNPSQQQTWYKDSRPQSESSLLSQEP 258 (741)
T ss_pred -------------------------ccceecchhhcCcccccceEEEEehhh-cCCcchhhhhccccccchhhhcccCCC
Confidence 111112222223488999999999654 689999999999987765531111111
Q ss_pred EcC--eEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCC
Q psy2166 257 AFG--MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP 334 (805)
Q Consensus 257 ~~~--~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p 334 (805)
.+. .+.+.+..-..++.-...|.+.| ..... ..+.+. .++.-.....+...+..|+...+.|...+ +.|
T Consensus 259 sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~~--~~tav~-----~~~~~~~Ist~~~~ls~g~s~r~~c~~ss-s~p 329 (741)
T KOG3515|consen 259 SGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAAS--QITAVQ-----VKPTAVPISTSDSGLSSGRSARSSCVSSS-SKP 329 (741)
T ss_pred CCCcccccccccccccchhhhhhccccC-ccccc--eeeecc-----cccccccccCcccccccccccccceeccC-CCC
Confidence 111 23455555555556677899998 12111 112222 11211111112222778999999998874 888
Q ss_pred CcEEEEEECCEEccCCCceE-EEEeC---cEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChh
Q psy2166 335 ELKVEWFHNGKPIFHKNRVK-MVSDF---GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPE 410 (805)
Q Consensus 335 ~~~v~W~~~g~~l~~~~~~~-~~~~~---~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~ 410 (805)
.+.+.|+++........... -.... ....+.+-.....|.|.|.|.+.+.......+....+.
T Consensus 330 ~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~------------- 396 (741)
T KOG3515|consen 330 PAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLP------------- 396 (741)
T ss_pred ccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceecc-------------
Confidence 89999999655443221110 00111 11235556667889999999998877444443333221
Q ss_pred HHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccC
Q psy2166 411 SLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAA 490 (805)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 490 (805)
T Consensus 397 -------------------------------------------------------------------------------- 396 (741)
T KOG3515|consen 397 -------------------------------------------------------------------------------- 396 (741)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEeeCCEEEEEEccCCCCCCEE
Q psy2166 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFHDFGIVILDILYCYEENSGV 568 (805)
Q Consensus 491 ~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~ 568 (805)
+..+|.|...-.......+++.....-.+.+ .++.+.+.|.+++.++....+ +.+....+ .+.+.++...|.|.
T Consensus 397 -~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~-~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~--~~s~~~v~~~d~g~ 472 (741)
T KOG3515|consen 397 -VLPSPAFLVRHKTAVVAMEQDHQAAPLPVRG-APAERTFYWTFRLYKLSQVDGGVVRVGAGAG--LGSGVNVSRSDGGS 472 (741)
T ss_pred -ccCCchhhhhcccceeeccCccccccCcccC-CCcccchhheecceecccccCceEEeecccc--ccccceeeeccCCc
Confidence 1222333222111111334444444333433 467789999999988865443 33333332 35567788999999
Q ss_pred EEEEEEcCCcceEEEEEEEEeeeeeeeecC----------------------CCCeEEEEECCEEccCCCc--eEEEeeC
Q psy2166 569 YECRATNKYGSDVTKASLKCVSKTNLILES----------------------QLPEVEWFYNGKKLPHGHR--YRTFHDF 624 (805)
Q Consensus 569 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~----------------------~~p~v~W~~~g~~l~~~~~--~~~~~~~ 624 (805)
|.|.|.|..|.......+-+...+.+.-.. ..-.+.|.+.|.+..+... .......
T Consensus 473 y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~ 552 (741)
T KOG3515|consen 473 YGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLM 552 (741)
T ss_pred ceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcccccccccccccC
Confidence 999999999999888887777655431110 1126788888876643211 1111112
Q ss_pred CEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCccccc
Q psy2166 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNL 704 (805)
Q Consensus 625 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v 704 (805)
....+.+.......+|+|.|.+.+..-.......|.+...+ .++ ..+|.+.......
T Consensus 553 ~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~--~v~------------------~~tp~~~~~~~g~--- 609 (741)
T KOG3515|consen 553 AHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSAL--IVT------------------VRTPNMYTAQEGC--- 609 (741)
T ss_pred CccceeecccccccccceEEeecCCCCccccceEEEecccc--ccc------------------ccCCceeeeccCc---
Confidence 23447777777777899999999832222233334433211 111 0233333222222
Q ss_pred CCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE--Eee---CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEE
Q psy2166 705 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT--VHA---FGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 779 (805)
..++..|.+. |.|.+.++|.|++.....+.++.. .+. .......+..+...|.+ -.|++.|.+|.+..+
T Consensus 610 ---v~as~~~~a~--~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~-~~c~t~n~lg~~~v~ 683 (741)
T KOG3515|consen 610 ---VNASDDCVAS--GVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDGSDYE-NGCTTQNLLGSDHVS 683 (741)
T ss_pred ---ccccccceec--ccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcchhhhc-ceeeecccCCCcccc
Confidence 1799999777 999999999999876444443321 111 12334666777777877 999999999988877
Q ss_pred EEEE
Q psy2166 780 VNLE 783 (805)
Q Consensus 780 ~~l~ 783 (805)
..+.
T Consensus 684 ~~~~ 687 (741)
T KOG3515|consen 684 GAIH 687 (741)
T ss_pred ceec
Confidence 6544
No 13
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.80 E-value=3.2e-18 Score=164.03 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=115.4
Q ss_pred CceecCCCcEEEEEEEecCC---------CCCceEEEEECCEec--C-CCCc---e--EEEe-cCcEEEEEEcccccCCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKN---------DPNLKIEWIFNGKPL--E-LGSR---F--KTTA-DFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~---------~p~~~v~W~k~g~~i--~-~~~~---~--~~~~-~~~~~~L~I~~~~~~D~ 136 (805)
.+.+.+|+++.|.|.+.+.. ...+.|.|+|++... . .+.+ . .... ..+..+|.|.+++.+|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 46889999999999986311 245699999987542 1 1111 0 0000 11223899999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccC
Q psy2166 137 GIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 216 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 216 (805)
|.|+|.|+|..+.......|.|.... . + ..+.
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~~~-----------------------------------------~------~-~~~~ 142 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDSGT-----------------------------------------I------N-YQFN 142 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEecCC-----------------------------------------c------c-ceEe
Confidence 99999999988877777777773210 0 0 1367
Q ss_pred CCceEEEEEEEeeC---CCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 217 EGEIAHFEASLIPV---GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 217 ~g~~~~l~C~~~~~---~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
+|+.+.|.|.+... +.|.|+|+|||+|++|....++.... +...|.|.+++.+|+|.|+|.|....
T Consensus 143 ~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~--~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 143 SGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRN--NNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred cCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeC--CCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 89999999987321 34679999999999998666654332 33479999999999999999999754
No 14
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.79 E-value=1.1e-18 Score=144.54 Aligned_cols=97 Identities=24% Similarity=0.297 Sum_probs=88.5
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
|.|...+.++ .+..|+.+.|.|.+. |.|+|.+.|+|+|++|..+.++++......+.|.|.++.++|+|.|+|.|.|
T Consensus 1 p~~~~~p~~~-~v~~G~~v~l~C~~~--G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPEDM-KVRAGESVELFCKVT--GTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred CceEECCcCE-EEECCCEEEEEEEEc--ccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence 5677788888 999999999999999 9999999999999999988888877777778999999999999999999999
Q ss_pred CCccEEEEEEEEEEEeCCCc
Q psy2166 772 KWGQAEISVNLECVVWSPSQ 791 (805)
Q Consensus 772 ~~G~~~~~~~l~V~~~~~~~ 791 (805)
.+|.+..+++|+|+..|.++
T Consensus 78 ~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 78 KLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred CCCceeEEEEEEEecCCCCC
Confidence 99999999999998766543
No 15
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.77 E-value=2.3e-17 Score=158.16 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=103.7
Q ss_pred CCeEEEEECCEEc--c-CCCce--E---EEe-eCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccc
Q psy2166 600 LPEVEWFYNGKKL--P-HGHRY--R---TFH-DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILE 670 (805)
Q Consensus 600 ~p~v~W~~~g~~l--~-~~~~~--~---~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~ 670 (805)
.+.+.|+|++... . .+.+. . ... .+....|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 62 ~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~------- 134 (227)
T PHA02826 62 SYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDS------- 134 (227)
T ss_pred CccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEec-------
Confidence 3589999988652 1 11110 0 000 01123599999999999999999999998888888888852
Q ss_pred cccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeec---CCCCeEEEEEECCEEccCCCCeEEEeeC
Q psy2166 671 SQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV---GDQTMTVEFLYNGKPIEASHRIRTVHAF 747 (805)
Q Consensus 671 ~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~---g~p~~~v~W~~~g~~l~~~~~~~~~~~~ 747 (805)
++ .+. .+.+|+.+.|.|.+... |.|.|.|+|+|||+++..+.++.+..++
T Consensus 135 --------------------~~------~~~-~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~ 187 (227)
T PHA02826 135 --------------------GT------INY-QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNN 187 (227)
T ss_pred --------------------CC------ccc-eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCC
Confidence 11 123 67789999999998611 2467999999999999888887655444
Q ss_pred cEEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 748 GMVVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 748 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
+ +|.|.+++.+|+|.|+|.|+..++
T Consensus 188 ~--~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 188 S--TLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred C--EEEECcCCHHhCEEEEEEEEEeEC
Confidence 4 799999999999999999999764
No 16
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=6.6e-17 Score=131.31 Aligned_cols=88 Identities=22% Similarity=0.354 Sum_probs=77.9
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
||.|...+.+. .+.+|+.+.|.|.+. |+|.|.|+|+|++..+....++. ..++ .|.|.++..+|+|.|+|.|.
T Consensus 1 ~p~i~~~~~~~-~~~~G~~v~l~C~~~--G~P~P~v~W~k~~~~~~~~~~~~--~~~~--~L~I~~v~~~D~G~Y~C~A~ 73 (88)
T cd05851 1 PADINVKFKDT-YALKGQNVTLECFAL--GNPVPVIRWRKILEPMPATAEIS--MSGA--VLKIFNIQPEDEGTYECEAE 73 (88)
T ss_pred CCceEEccccE-EEeCCCcEEEEEEec--ccCCCEEEEEECCcCCCCCCEEe--cCCC--EEEECcCChhhCEEEEEEEE
Confidence 58889999998 999999999999999 99999999999999887654433 2333 79999999999999999999
Q ss_pred cCCccEEEEEEEEEE
Q psy2166 771 NKWGQAEISVNLECV 785 (805)
Q Consensus 771 N~~G~~~~~~~l~V~ 785 (805)
|.+|.+..+++|.|+
T Consensus 74 N~~G~~~~~~~l~V~ 88 (88)
T cd05851 74 NIKGKDKHQARVYVQ 88 (88)
T ss_pred cCCCceEEEEEEEEC
Confidence 999999999999884
No 17
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.69 E-value=2.3e-16 Score=129.93 Aligned_cols=91 Identities=27% Similarity=0.376 Sum_probs=83.3
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.||+|...|.+. .+.+|+.+.|.|.+. |+|.|.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|
T Consensus 2 ~~~~~~~~p~~~-~~~~G~~~~L~C~~~--g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 2 LPATILTKPRSL-TVSEGESARFSCDVD--GEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCCcccccCccE-EEeCCCcEEEEEEEe--ecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence 578899999888 999999999999999 99999999999999998888887776666779999999999999999999
Q ss_pred EcCCccEEEEEEEE
Q psy2166 770 TNKWGQAEISVNLE 783 (805)
Q Consensus 770 ~N~~G~~~~~~~l~ 783 (805)
.|.+|..+.+++|+
T Consensus 79 ~N~~G~~~~~~~l~ 92 (92)
T cd05747 79 ENSEGKQEAQFTLT 92 (92)
T ss_pred EcCCCCEeEEEEeC
Confidence 99999999988874
No 18
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.69 E-value=3.1e-16 Score=129.91 Aligned_cols=95 Identities=22% Similarity=0.358 Sum_probs=84.9
Q ss_pred CceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEc
Q psy2166 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 575 (805)
Q Consensus 496 P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 575 (805)
|.|...+.+.. +..|+.++|.|.+. |.|.+.+.|+|||++|..+.++.+......+.|.|.++..+|+|.|+|.|.|
T Consensus 1 p~~~~~p~~~~-v~~G~~v~l~C~~~--G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPEDMK-VRAGESVELFCKVT--GTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred CceEECCcCEE-EECCCEEEEEEEEc--ccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence 55666665554 89999999999999 8899999999999999888788877777778999999999999999999999
Q ss_pred CCcceEEEEEEEEeeeee
Q psy2166 576 KYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 576 ~~g~~~~~~~l~V~~~~~ 593 (805)
..|....++.|.|...|.
T Consensus 78 ~~G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 78 KLGSRQAQVNLTVVDKPD 95 (98)
T ss_pred CCCceeEEEEEEEecCCC
Confidence 999999999999998775
No 19
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.68 E-value=4.2e-16 Score=128.63 Aligned_cols=90 Identities=36% Similarity=0.542 Sum_probs=85.5
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
|+|...+.+. .+.+|+.+.|.|.+. |.|.+.+.|+++|..+..+.++.+...++...|.|.++..+|+|.|+|.|.|
T Consensus 1 P~~~~~~~~~-~v~~G~~~~l~c~~~--~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n 77 (90)
T PF07679_consen 1 PVFTKKPKDV-TVKEGESVTLECEVS--GNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASN 77 (90)
T ss_dssp EEEEEESSEE-EEETTSEEEEEEEEE--ESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEE
T ss_pred CEEEEecCCE-EEeCCCEEEEEEEEE--eCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEE
Confidence 6788888888 999999999999999 8899999999999999999999998888999999999999999999999999
Q ss_pred CCccEEEEEEEEE
Q psy2166 772 KWGQAEISVNLEC 784 (805)
Q Consensus 772 ~~G~~~~~~~l~V 784 (805)
..|..+.++.|.|
T Consensus 78 ~~g~~~~~~~l~V 90 (90)
T PF07679_consen 78 SSGEATASVNLTV 90 (90)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEC
Confidence 9999999999987
No 20
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.68 E-value=4.8e-16 Score=125.35 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=72.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+.+|+.+.|.|.+. |.|.|.|.|+|+|+++... .++.+........|.|.++.++|+|.|+|.|.|.+|+++.++.
T Consensus 6 ~v~~G~~v~l~c~~~--G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 6 VVVAGNKLRLDVPIS--GEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEcCCEEEEEeeEe--ecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 789999999999999 9999999999999999764 4677666666778999999999999999999999999999998
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 876
No 21
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.67 E-value=3.7e-16 Score=121.56 Aligned_cols=73 Identities=23% Similarity=0.280 Sum_probs=64.4
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccC-CCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEA-SHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
+.|.|.+. |.|.|.|.|+|+|+.+.. +.++.+..+ .+..+|.|.++..+|+|.|+|.|.|.+|..+.+++|.|
T Consensus 1 v~l~C~v~--G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQIS--AIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEE--ecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999 999999999999999874 467766544 45568999999999999999999999999999999986
No 22
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.67 E-value=5.3e-16 Score=127.69 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=72.8
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
++.+|+++.|.|.+. |.|.|.|.|+|+|+++..+.++.+... +....|.|.++..+|+|.|+|.|.|.+|.++..+.
T Consensus 12 ~v~~G~~v~L~C~v~--G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05737 12 TIMEGKTLNLTCTVF--GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVT 89 (92)
T ss_pred EEeCCCcEEEEEEEE--ecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence 899999999999999 999999999999999998888776544 44678999999999999999999999999999988
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 90 v~v 92 (92)
T cd05737 90 VSV 92 (92)
T ss_pred EeC
Confidence 876
No 23
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.66 E-value=6.1e-16 Score=128.03 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=70.9
Q ss_pred ccCCCCeEEEEEEEeecC-CCCeEEEEEECCEEccCCCCeEEEeeC-----cEEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 703 NLSEGEIAHFEASLIPVG-DQTMTVEFLYNGKPIEASHRIRTVHAF-----GMVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
.+.+|+.+.|.|.+. | +|+|.+.|+|||.+|.......+.... ....|.|.+++.+|+|.|+|.|+|..|..
T Consensus 14 ~v~~G~~v~L~c~v~--g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 14 FVNLGENLNLVVEVE--AYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred EEECCCCEEEEEEEE--ecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 899999999999999 8 899999999999999865554333321 13679999999999999999999999999
Q ss_pred EEEEEEEEEE
Q psy2166 777 EISVNLECVV 786 (805)
Q Consensus 777 ~~~~~l~V~~ 786 (805)
+.++.|.|.+
T Consensus 92 ~~t~~L~V~v 101 (101)
T cd04975 92 SLTFELYVNV 101 (101)
T ss_pred EEEEEEEEEC
Confidence 9999999864
No 24
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.64 E-value=8.7e-16 Score=119.15 Aligned_cols=73 Identities=26% Similarity=0.297 Sum_probs=66.4
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
|+.+.|.|.+. |.|.|.|.|+|++..+..+.++.+..+ + .|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 G~~~~l~C~~~--g~P~p~v~W~k~~~~l~~~~r~~~~~~-g--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPK--AAPKPKFSWSKGTELLVNNSRISIWDD-G--SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecc--eeCCCEEEEEeCCEecccCCCEEEcCC-C--EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 78999999999 999999999999999888888776443 3 6999999999999999999999999999999976
No 25
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.64 E-value=1.4e-15 Score=118.63 Aligned_cols=73 Identities=22% Similarity=0.333 Sum_probs=63.9
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEeeC-cEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAF-GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
+.|.|.+. |.|.|.|+|+|++..+..+ .++.+..++ +..+|.|.++..+|+|.|+|.|.|.+|+.+.+++|.|
T Consensus 1 v~l~C~v~--G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVS--GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEe--EecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999 9999999999999998754 566665443 4557999999999999999999999999999999986
No 26
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.64 E-value=2.8e-15 Score=122.89 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=72.8
Q ss_pred cCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 697 ~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
.+.+. .+.+|+.+.|.|.+. |+|.|.+.|+++|..+................|.|.+++.+|.|.|+|.|.|.+|+.
T Consensus 6 ~p~~~-~v~~G~~v~l~C~~~--G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 6 GPNAT-VVYEGGTATIRCTAE--GSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA 82 (90)
T ss_pred CCcCE-EEcCCCcEEEEEEEE--EcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence 34555 799999999999999 999999999999998876655433444455689999999999999999999999999
Q ss_pred EEEEEEEE
Q psy2166 777 EISVNLEC 784 (805)
Q Consensus 777 ~~~~~l~V 784 (805)
+.+++|.|
T Consensus 83 ~~~~~L~v 90 (90)
T cd04972 83 NVSVQVTV 90 (90)
T ss_pred eEEEEEeC
Confidence 99999875
No 27
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.63 E-value=1.2e-15 Score=119.86 Aligned_cols=74 Identities=23% Similarity=0.385 Sum_probs=65.9
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
+|+++.|.|.+. |+|.|.|+|+|+|..+....++.+.. .+ +|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 eG~~v~l~C~~~--g~P~p~i~W~k~g~~~~~~~~~~~~~-~~--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQ--GYPQPVIAWTKGGSQLSVDRRHLVLS-SG--TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECC--EecCCEEEEEECCEECCCCCCeEEcc-CC--eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 699999999998 99999999999999988776655433 33 7999999999999999999999999999999876
No 28
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.63 E-value=2.7e-15 Score=124.67 Aligned_cols=80 Identities=24% Similarity=0.324 Sum_probs=69.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+..|+++.|.|.+. |.|.|.|.|+|+|..+... .++....++ ..|+|.+++.+|+|.|+|.|.|.+|..+.++.
T Consensus 14 ~~~~G~~v~L~C~~~--g~P~p~v~W~k~g~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 14 TANLGQSVTLACDAD--GFPEPTMTWTKDGEPIESGEEKYSFNEDG--SEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred EEeCCCCEEEEEecc--EeCCCEEEEEECCEECcCCCCEEEEeCCC--CEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 789999999999999 9999999999999998776 444333332 37999999999999999999999999999999
Q ss_pred EEEEE
Q psy2166 782 LECVV 786 (805)
Q Consensus 782 l~V~~ 786 (805)
|+|.+
T Consensus 90 L~V~~ 94 (95)
T cd05730 90 LKVFA 94 (95)
T ss_pred EEEEe
Confidence 99975
No 29
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.62 E-value=3.1e-15 Score=124.78 Aligned_cols=90 Identities=21% Similarity=0.371 Sum_probs=74.6
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CCEEccC-----CCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGKPIEA-----SHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~~l~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
+|+|.. +.+. .+.+|+.++|.|.+. |.|.|.|+|+| +|..+.. +.++.+....+...|+|.+++.+|+|
T Consensus 2 ~p~i~~-~~~~-~~~~G~~v~l~C~~~--G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 2 QPHIIQ-LKNE-TTVENGAATLSCKAE--GEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77 (98)
T ss_pred CCEEEe-eccE-EEcCCCcEEEEEecc--cCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence 577765 5677 899999999999998 99999999999 4554432 24666554455668999999999999
Q ss_pred EEEEEEEcCCccEEEEEEEEE
Q psy2166 764 VYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 764 ~Y~C~a~N~~G~~~~~~~l~V 784 (805)
.|+|.|.|.+|....++.|.|
T Consensus 78 ~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCcceeEEEEeC
Confidence 999999999999999999876
No 30
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.62 E-value=3.8e-15 Score=124.01 Aligned_cols=91 Identities=21% Similarity=0.257 Sum_probs=75.5
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-----CCeEEEeeCcEEEEEEcCCCCCCCEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-----HRIRTVHAFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y 765 (805)
+|.|...+... .+..|+.++|.|.+. |.|.|.|+|+++++.+... .++.+........|.|.+++.+|+|.|
T Consensus 2 ~p~i~~~~~~~-~~~~g~~v~l~C~~~--G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 2 KPKITYVENQT-AMELEEQITLTCEAS--GDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred CceEEEccCce-EEEcCCCEEEEEEee--EeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEE
Confidence 47777776666 666789999999999 9999999999999877543 234444444556899999999999999
Q ss_pred EEEEEcCCccEEEEEEEEE
Q psy2166 766 TCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 766 ~C~a~N~~G~~~~~~~l~V 784 (805)
+|.|.|.+|.++.++.|+|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999999999986
No 31
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.62 E-value=4.3e-15 Score=116.90 Aligned_cols=74 Identities=26% Similarity=0.381 Sum_probs=68.1
Q ss_pred eEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 709 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 709 ~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
++.|.|.+. |.|.|.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.|.+|.++.+++|.|
T Consensus 1 ~~~l~c~~~--G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPIS--GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEe--eeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 478999999 99999999999999998888888777777789999999999999999999999999999999876
No 32
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.62 E-value=7.4e-15 Score=119.15 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=67.8
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEe-e---CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVH-A---FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~-~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
|+.++|.|.+. |.|++.|+|+|++..+..+ .++.+.. . .....|.|.++..+|+|.|+|.|.|.+|..+.++.
T Consensus 1 g~~~~l~C~~~--g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAH--GEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEEE--CCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 78999999999 9999999999999988654 3554432 1 22367999999999999999999999999999999
Q ss_pred EEEEEeC
Q psy2166 782 LECVVWS 788 (805)
Q Consensus 782 l~V~~~~ 788 (805)
|+|+..|
T Consensus 79 L~V~~~P 85 (88)
T cd05735 79 LTVQEPP 85 (88)
T ss_pred EEEeCCC
Confidence 9997643
No 33
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.61 E-value=3.7e-15 Score=123.65 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=70.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee------CcEEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA------FGMVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
.+..|+.+.|.|.+. |+|+|.|+|+|||++|..+.+..+... ....+|+|.+++.+|+|.|+|.|.|..|..
T Consensus 14 ~~~~~~~~~l~~~v~--g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 14 FANLHEVKEFVVEVE--AYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred EEecCCcEEEEEEEE--EeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 789999999999999 999999999999999987665433211 123589999999999999999999999999
Q ss_pred EEEEEEEEEE
Q psy2166 777 EISVNLECVV 786 (805)
Q Consensus 777 ~~~~~l~V~~ 786 (805)
+.++.|.|++
T Consensus 92 ~~t~~l~V~v 101 (101)
T cd05859 92 SYTFALQIQV 101 (101)
T ss_pred EEEEEEEEEC
Confidence 9999999864
No 34
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.61 E-value=3.8e-15 Score=120.39 Aligned_cols=82 Identities=27% Similarity=0.438 Sum_probs=72.2
Q ss_pred ecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 696 SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 696 ~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
..|.+. .+..|+.+.|.|.+. |.|.|.+.|+|+|..+....++.+. .+ .|.|.+++.+|+|.|+|.|.|.+|.
T Consensus 4 ~~p~~~-~~~~G~~~~l~C~~~--g~p~p~v~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 4 KVISDT-EADIGSSLRWECKAS--GNPRPAYRWLKNGQPLASENRIEVE--AG--DLRITKLSLSDSGMYQCVAENKHGT 76 (85)
T ss_pred ccCCcc-EEcCCCcEEEEEEee--EeCCCEEEEEECCEECCCCCeEEEe--CC--EEEEeeCCHHHCEEEEEEEECCCCe
Confidence 345566 899999999999999 9999999999999999877776542 33 6999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2166 776 AEISVNLEC 784 (805)
Q Consensus 776 ~~~~~~l~V 784 (805)
...++.|.|
T Consensus 77 ~~~~~~l~V 85 (85)
T cd05728 77 IYASAELAV 85 (85)
T ss_pred EEEEEEEEC
Confidence 999999876
No 35
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.60 E-value=7.2e-15 Score=115.17 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=63.8
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccC-CCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEA-SHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
++|.|.+. |.|.|.|.|+|+|+.+.. ..++.+..+ .+..+|.|.+++.+|+|.|+|.|.|.+|+.+.+++|.|
T Consensus 1 v~L~C~v~--G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVS--AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEe--ecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 57999999 999999999999999874 456665443 45568999999999999999999999999999999976
No 36
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.60 E-value=9.3e-15 Score=119.98 Aligned_cols=85 Identities=26% Similarity=0.447 Sum_probs=70.3
Q ss_pred cCCcccccCCCCeEEEEEEEeecCCCC-eEEEEEE-CCEEccC-CCCeEEEe-eCcEEEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 697 EFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLY-NGKPIEA-SHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 697 ~~~~~~~v~~G~~~~l~C~~~~~g~p~-~~v~W~~-~g~~l~~-~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
.|.+. .+.+|++++|.|.+. |.|. |.|+|++ ||+.+.. +.++.+.. ++...+|.|.+++.+|+|.|+|.|+|.
T Consensus 6 ~p~~~-~v~~G~~v~l~C~v~--G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 6 VPSQG-EISVGESKFFLCQVA--GEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred eCCcc-EECCCCeEEEEEEEe--CCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence 34455 789999999999999 9995 7999998 8887765 44555433 334568999999999999999999999
Q ss_pred C-ccEEEEEEEEE
Q psy2166 773 W-GQAEISVNLEC 784 (805)
Q Consensus 773 ~-G~~~~~~~l~V 784 (805)
+ |..+.++.|.|
T Consensus 83 ~~g~~~~s~~l~v 95 (96)
T cd05865 83 DEGESEATVNVKI 95 (96)
T ss_pred CCCcEEEEEEEEE
Confidence 7 89999999887
No 37
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.60 E-value=1.1e-14 Score=118.24 Aligned_cols=84 Identities=32% Similarity=0.526 Sum_probs=72.1
Q ss_pred cCCcccccCCCCeEEEEEEEeecCCCCeEEEEEE-CCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 697 ~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
.+.+. .+.+|+++.|.|.+. |.|. .++|++ +|.++..+.++.+..++....|.|.++..+|+|.|+|.|+|.+|.
T Consensus 6 ~~~~~-~v~~G~~v~l~C~~~--G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 6 SLSKV-ELSVGESKFFTCTAI--GEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred Eecce-EEcCCCeEEEEEEEE--EeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 45566 899999999999999 9998 999998 588888888888776666778999999999999999999999997
Q ss_pred E-EEEEEEEE
Q psy2166 776 A-EISVNLEC 784 (805)
Q Consensus 776 ~-~~~~~l~V 784 (805)
. ..++.|.|
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 5 66666665
No 38
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.60 E-value=1e-14 Score=119.99 Aligned_cols=89 Identities=25% Similarity=0.411 Sum_probs=75.9
Q ss_pred eEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEee-CCEEEEEEccCCCCCCEEEEEEEEcC
Q psy2166 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD-FGIVILDILYCYEENSGVYECRATNK 576 (805)
Q Consensus 498 ~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~ 576 (805)
+...+++...+.+|++++|.|.+. |.|.|++.|+|+|.++..+.++.+... +....|.|.+++.+|+|.|+|.|.|.
T Consensus 3 ~~~~lp~~v~v~~G~~v~L~C~v~--G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (92)
T cd05737 3 VVGGLPDVVTIMEGKTLNLTCTVF--GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNK 80 (92)
T ss_pred eeccCCceEEEeCCCcEEEEEEEE--ecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEEC
Confidence 344556655689999999999999 779999999999999988777776544 45668999999999999999999999
Q ss_pred CcceEEEEEEEE
Q psy2166 577 YGSDVTKASLKC 588 (805)
Q Consensus 577 ~g~~~~~~~l~V 588 (805)
.|.....+.|.|
T Consensus 81 ~G~~~~~~~v~v 92 (92)
T cd05737 81 YGGETVDVTVSV 92 (92)
T ss_pred CCcceEEEEEeC
Confidence 999998888765
No 39
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.60 E-value=7.1e-15 Score=120.09 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=74.4
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
||.|...+.+. .+.+|+.+.|.|.+. |.|.|.++|+|++..+....... ...+ .|.|.+++.+|+|.|+|.|.
T Consensus 1 p~~~~~~p~~~-~~~~g~~v~l~C~~~--g~P~p~v~W~k~~~~~~~~~~~~--~~~~--~L~i~~v~~~D~G~Y~C~a~ 73 (88)
T cd04968 1 PSIIVVFPKDT-YALKGQNVTLECFAL--GNPVPQIKWRKVDGSMPSSAEIS--MSGA--VLKIPNIQFEDEGTYECEAE 73 (88)
T ss_pred CCcEEECCCce-EEeCCCcEEEEEEee--EeCCCEEEEEECCCcCCCccEEE--EeCC--EEEECCCCcccCEEEEEEEE
Confidence 45666677777 899999999999998 99999999999987765554332 2233 79999999999999999999
Q ss_pred cCCccEEEEEEEEEE
Q psy2166 771 NKWGQAEISVNLECV 785 (805)
Q Consensus 771 N~~G~~~~~~~l~V~ 785 (805)
|.+|....++.|.|.
T Consensus 74 N~~G~~~~~~~l~V~ 88 (88)
T cd04968 74 NIKGKDTHQGRIYVQ 88 (88)
T ss_pred ECCCcEEEEEEEEEC
Confidence 999999999999873
No 40
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.60 E-value=4e-15 Score=112.12 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=58.1
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
++|.|.+. |+|.|.++|+|||+++.... ....|.|.++..+|+|.|+|.|+|.+|..+.++.|+|.+
T Consensus 1 ~~l~c~v~--g~P~P~v~W~kdg~~l~~~~--------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~v 67 (67)
T cd05863 1 VKLPVKVA--AYPPPEFQWYKDGKLISGKH--------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELIV 67 (67)
T ss_pred CEEEEEEE--EeCCCEEEEEECCEECcccC--------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEEC
Confidence 47999999 99999999999999996321 223799999999999999999999999888888888753
No 41
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.60 E-value=7.4e-15 Score=114.01 Aligned_cols=71 Identities=31% Similarity=0.456 Sum_probs=63.3
Q ss_pred eEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 709 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 709 ~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
.+.|.|.+. |.|.|.|+|+|+|..+.++.++.+..++ .|.|.++..+|+|.|+|.|.|.+|+.+.+++|.|
T Consensus 1 ~v~l~C~~~--G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVT--GKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEE--EeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999 9999999999999999888777765544 4788899999999999999999999999999976
No 42
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.60 E-value=6.6e-15 Score=122.89 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=74.7
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-----CCeEEEeeCcEEEEEEcCCCCCCCEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-----HRIRTVHAFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y 765 (805)
+|+|. .+.+. .+.+|+.+.|.|.+. |.|.|.|.|++++..+... .++.+........|.|.++..+|+|.|
T Consensus 2 ~P~i~-~~~~~-~~~~g~~v~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 77 (96)
T cd05732 2 QPKIT-YLENQ-TAVELEQITLTCEAE--GDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY 77 (96)
T ss_pred Cccce-ecCce-eEecCCcEEEEEEEe--EcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEe
Confidence 56675 34556 899999999999999 9999999999999776543 244444445567899999999999999
Q ss_pred EEEEEcCCccEEEEEEEEE
Q psy2166 766 TCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 766 ~C~a~N~~G~~~~~~~l~V 784 (805)
+|.|.|.+|.++.++.|.|
T Consensus 78 ~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCCcEEEEEEeC
Confidence 9999999999999998875
No 43
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.59 E-value=9.7e-15 Score=115.88 Aligned_cols=77 Identities=26% Similarity=0.264 Sum_probs=70.0
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
|+++.|.|.+. |.|.|.|+|++++..+....++.+...++...|.|.+++.+|+|.|+|.|.|.+|.....+.+.+.
T Consensus 1 G~~v~l~C~~~--g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~~ 77 (78)
T cd05743 1 GETVEFTCVAT--GVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGILT 77 (78)
T ss_pred CCEEEEEEEEE--EecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEEE
Confidence 78999999999 999999999999999888788877777777899999999999999999999999999888887765
No 44
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.59 E-value=1.6e-14 Score=114.04 Aligned_cols=75 Identities=29% Similarity=0.461 Sum_probs=63.6
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe-EEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
|+++.|.|.+. |.|.|.|+|+|+|.++...... +.....+ .|.|.+++.+|+|.|+|.|.|.+|....++.|.|.
T Consensus 1 G~~v~l~C~~~--G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 76 (76)
T cd05867 1 GETARLDCQVE--GIPTPNITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV 76 (76)
T ss_pred CCeEEEEEEee--EeCCCeEEEEECCEECCCCCCCceEEeeCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence 78999999999 9999999999999988764321 2222333 69999999999999999999999999999999883
No 45
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.58 E-value=2.4e-14 Score=117.95 Aligned_cols=91 Identities=20% Similarity=0.310 Sum_probs=79.2
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRA 573 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 573 (805)
.||+|...+.+.. +.+|+.++|.|.+. |.|.|.+.|+|+|..+..+.++.+......+.|.|.++..+|+|.|+|.|
T Consensus 2 ~~~~~~~~p~~~~-~~~G~~~~L~C~~~--g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 2 LPATILTKPRSLT-VSEGESARFSCDVD--GEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCCcccccCccEE-EeCCCcEEEEEEEe--ecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence 3677777766654 99999999999999 77889999999999998877887766666678999999999999999999
Q ss_pred EcCCcceEEEEEEE
Q psy2166 574 TNKYGSDVTKASLK 587 (805)
Q Consensus 574 ~n~~g~~~~~~~l~ 587 (805)
.|..|.....+.|+
T Consensus 79 ~N~~G~~~~~~~l~ 92 (92)
T cd05747 79 ENSEGKQEAQFTLT 92 (92)
T ss_pred EcCCCCEeEEEEeC
Confidence 99999998887763
No 46
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.58 E-value=3e-14 Score=114.87 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=71.5
Q ss_pred ccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEE
Q psy2166 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584 (805)
Q Consensus 506 ~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 584 (805)
..+.+|+.+.|.|.+. |.|.|.++|+|+|+++... .++.+......+.|.|.++..+|+|.|+|.|.|..|....++
T Consensus 5 ~~v~~G~~v~l~c~~~--G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 5 IVVVAGNKLRLDVPIS--GEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEcCCEEEEEeeEe--ecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 3488999999999999 7899999999999999753 467766666677899999999999999999999999999888
Q ss_pred EEEE
Q psy2166 585 SLKC 588 (805)
Q Consensus 585 ~l~V 588 (805)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 8865
No 47
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.57 E-value=2.2e-14 Score=116.46 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=75.0
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
+|.|...+. +..+.+|+.++|.|.+. |.|.|.|+|+|++..+....++.+ .+. .|.|.+++.+|+|.|+|.|.
T Consensus 1 ~p~i~~~~~-~~~~~~G~~v~l~C~~~--G~P~P~v~W~k~~~~~~~~~~~~~--~~~--~L~I~~v~~~D~G~Y~C~A~ 73 (88)
T cd05851 1 PADINVKFK-DTYALKGQNVTLECFAL--GNPVPVIRWRKILEPMPATAEISM--SGA--VLKIFNIQPEDEGTYECEAE 73 (88)
T ss_pred CCceEEccc-cEEEeCCCcEEEEEEec--ccCCCEEEEEECCcCCCCCCEEec--CCC--EEEECcCChhhCEEEEEEEE
Confidence 477777776 67899999999999999 799999999999988876554433 222 79999999999999999999
Q ss_pred eCCeeEEEEEEEEEe
Q psy2166 145 NLAGETFTSTTIYCS 159 (805)
Q Consensus 145 n~~g~~~~~~~l~V~ 159 (805)
|..|.....+.|.|+
T Consensus 74 N~~G~~~~~~~l~V~ 88 (88)
T cd05851 74 NIKGKDKHQARVYVQ 88 (88)
T ss_pred cCCCceEEEEEEEEC
Confidence 999999998888873
No 48
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.57 E-value=2.9e-14 Score=118.00 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=71.0
Q ss_pred cccccCCCeEEEEEEEeeCC-CCCcEEEEEECCEEccCCCceEEEeeC-----CEEEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 505 VTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDF-----GIVILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 505 ~~~v~~G~~v~L~C~v~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
...+.+|++++|.|.+. | .|+|.+.|+|||.+|.......+...+ ....|.|.++..+|+|.|+|.|.|..|
T Consensus 12 ~~~v~~G~~v~L~c~v~--g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 12 TIFVNLGENLNLVVEVE--AYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred eEEEECCCCEEEEEEEE--ecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 34588999999999999 6 899999999999999866554443332 246799999999999999999999999
Q ss_pred ceEEEEEEEEee
Q psy2166 579 SDVTKASLKCVS 590 (805)
Q Consensus 579 ~~~~~~~l~V~~ 590 (805)
..+.++.|.|.+
T Consensus 90 ~~~~t~~L~V~v 101 (101)
T cd04975 90 SKSLTFELYVNV 101 (101)
T ss_pred cEEEEEEEEEEC
Confidence 999999998863
No 49
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.57 E-value=1.8e-14 Score=113.34 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=63.5
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC-eEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR-IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
|+.+.|.|.+. |+|.|.|+|+|+|+++..... .....+++ .|.|.+++.+|+|.|+|.|+|.+|....+++|.|.
T Consensus 1 g~~~~l~C~a~--G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRAN--GNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEee--EeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 78899999999 999999999999999864422 11223333 68999999999999999999999999999999983
No 50
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.56 E-value=3.3e-14 Score=117.28 Aligned_cols=90 Identities=33% Similarity=0.584 Sum_probs=81.8
Q ss_pred CceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEc
Q psy2166 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 575 (805)
Q Consensus 496 P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 575 (805)
|+|...+.+.. +.+|++++|.|.+. +.|.+.+.|+++|..+..+.++.+...+..+.|.|.++..+|+|.|+|.|.|
T Consensus 1 P~~~~~~~~~~-v~~G~~~~l~c~~~--~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n 77 (90)
T PF07679_consen 1 PVFTKKPKDVT-VKEGESVTLECEVS--GNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASN 77 (90)
T ss_dssp EEEEEESSEEE-EETTSEEEEEEEEE--ESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEE
T ss_pred CEEEEecCCEE-EeCCCEEEEEEEEE--eCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEE
Confidence 56777775554 99999999999999 5688999999999999999999998888999999999999999999999999
Q ss_pred CCcceEEEEEEEE
Q psy2166 576 KYGSDVTKASLKC 588 (805)
Q Consensus 576 ~~g~~~~~~~l~V 588 (805)
..|..+..+.|.|
T Consensus 78 ~~g~~~~~~~l~V 90 (90)
T PF07679_consen 78 SSGEATASVNLTV 90 (90)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEC
Confidence 9999999999876
No 51
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.56 E-value=3.1e-14 Score=120.27 Aligned_cols=91 Identities=27% Similarity=0.475 Sum_probs=72.4
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-----CCeEEEeeCcEEEEEEc--CCCCCCCE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-----HRIRTVHAFGMVVLEIL--GTKIEDTG 763 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~--~v~~~d~G 763 (805)
||.|...+.+. .+.+|+.+.|.|.+. |.|.|.|+|+|+|..+... .+..+..++....|.|. .++.+|+|
T Consensus 1 ~P~i~~~p~~~-~v~~G~~~~l~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G 77 (100)
T cd07693 1 PPRIVEHPSDL-IVSKGDPATLNCKAE--GRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEG 77 (100)
T ss_pred CCeEEecCcee-EEcCCCeEEEEeeCC--cCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCE
Confidence 58888888888 999999999999998 9999999999999988762 22222333333344443 34789999
Q ss_pred EEEEEEEcCCcc-EEEEEEEEE
Q psy2166 764 VYTCRATNKWGQ-AEISVNLEC 784 (805)
Q Consensus 764 ~Y~C~a~N~~G~-~~~~~~l~V 784 (805)
.|+|.|.|.+|. .+..+.|.|
T Consensus 78 ~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 78 VYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEEccccceecceEEEEe
Confidence 999999999998 778888877
No 52
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.56 E-value=3.1e-14 Score=116.76 Aligned_cols=80 Identities=24% Similarity=0.386 Sum_probs=71.0
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+.+|+.+.|.|.+. |.|.|.+.|+|+|..+..+.++.+... +....|.|.+++.+|+|.|+|.|.|.+|.++.++.
T Consensus 12 ~v~eG~~v~L~C~v~--g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05891 12 TIMEGKTLNLTCTVF--GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT 89 (92)
T ss_pred EEcCCCEEEEEEEEE--EeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence 899999999999998 999999999999999988877765433 33458999999999999999999999999999888
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 90 v~~ 92 (92)
T cd05891 90 VSV 92 (92)
T ss_pred EEC
Confidence 875
No 53
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.56 E-value=3.6e-14 Score=115.35 Aligned_cols=80 Identities=25% Similarity=0.379 Sum_probs=68.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeE-EEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+.+|+.+.|.|.+. |.|.|.|+|+|+|..+..+.+.. .........|.|.++..+|+|.|+|.|.|.+|....+++
T Consensus 5 ~v~~G~~~~L~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 5 AVPAANTVKFRCPAA--GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EcCCCCEEEEEEEcC--CCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 688999999999998 99999999999999998765532 112223457999999999999999999999999999999
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 876
No 54
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.56 E-value=2e-14 Score=112.51 Aligned_cols=73 Identities=29% Similarity=0.345 Sum_probs=65.9
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
|+.+.|.|.+. |.|.|.++|+|++..+....++.+..+ + .|.|.+++.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 G~~v~L~C~~~--g~P~p~v~W~k~~~~~~~~~~~~~~~~-~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPK--AAPKPTISWSKGTELLTNSSRICIWPD-G--SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeee--EcCCCEEEEEECCEEcccCCCEEECCC-C--eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 78999999998 999999999999999988878765433 3 6999999999999999999999999999999876
No 55
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.56 E-value=3.2e-14 Score=110.67 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=63.3
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccC-CCceEEEee-CCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPH-GHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
|.|.|.+. |.|.|.++|+|||+.|.. +.++.+..+ ++...|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~--G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQIS--AIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEE--ecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999 789999999999999974 457766544 44568999999999999999999999999999999875
No 56
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.56 E-value=4.9e-14 Score=115.98 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=65.8
Q ss_pred CeeeecCCcccccC---CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCC-CCCCEEEEE
Q psy2166 692 PQFTSEFQHLSNLS---EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTK-IEDTGVYTC 767 (805)
Q Consensus 692 P~~~~~~~~~~~v~---~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C 767 (805)
|.|...|.++ .+. +|+.+.|.|.+. |.|.|.|+|+|||..+......++....+ .|.|.++. .+|+|.|+|
T Consensus 2 P~f~~~p~~~-~~~~~~~g~~v~l~C~~~--G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C 76 (94)
T cd05848 2 PVFVQEPDDA-IFPTDSDEKKVILNCEAR--GNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQC 76 (94)
T ss_pred CeeEECCCcE-EccCCCCCCEEEEEEEee--ecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEE
Confidence 6777777776 443 578999999999 99999999999999997654444333344 68898885 699999999
Q ss_pred EEEcCCccEEE
Q psy2166 768 RATNKWGQAEI 778 (805)
Q Consensus 768 ~a~N~~G~~~~ 778 (805)
.|.|.+|...+
T Consensus 77 ~A~N~~G~~~S 87 (94)
T cd05848 77 LATNSIGSILS 87 (94)
T ss_pred EEEcCCCeEEe
Confidence 99999997754
No 57
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.56 E-value=2.3e-14 Score=113.35 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=64.6
Q ss_pred CeEEEEEEEeecCCCCeEEEEEECCEEccC---CCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 708 EIAHFEASLIPVGDQTMTVEFLYNGKPIEA---SHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~---~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
+++.|.|.+..++.+++.|.|+|||++|.. +.++..... .....|+|.+++..|+|.|+|.|+|.+++.+.+++|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999844567899999999999963 234433211 1123799999999999999999999999999999999
Q ss_pred EEEeC
Q psy2166 784 CVVWS 788 (805)
Q Consensus 784 V~~~~ 788 (805)
|+++|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 98754
No 58
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.55 E-value=5.2e-14 Score=113.21 Aligned_cols=78 Identities=23% Similarity=0.235 Sum_probs=63.5
Q ss_pred CeEEEEEEEeecCCCCe--EEEEEECCEEccCC---CCeEE-EeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 708 EIAHFEASLIPVGDQTM--TVEFLYNGKPIEAS---HRIRT-VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p~~--~v~W~~~g~~l~~~---~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
+.++|.|.+. |+|.| .|+|+|||+++... .++.. ........|.|.+++.+|+|.|+|.|.|.+|+.+.++.
T Consensus 1 ~~~~L~C~a~--g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHAS--HDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred CcEEEEEEEe--cCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 4689999999 88887 68999999988643 23322 22223358999999999999999999999999999999
Q ss_pred EEEEEe
Q psy2166 782 LECVVW 787 (805)
Q Consensus 782 l~V~~~ 787 (805)
|.|..+
T Consensus 79 L~V~~~ 84 (85)
T cd05854 79 LVVRGP 84 (85)
T ss_pred EEEECC
Confidence 999763
No 59
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.55 E-value=2.8e-14 Score=111.15 Aligned_cols=71 Identities=21% Similarity=0.264 Sum_probs=59.6
Q ss_pred EEEEEEeecCCCCeEEEEEECCEEccCCCCeEE--Ee---eCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 711 HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT--VH---AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 711 ~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
.|.|.+. |+|.|.|+|+|||++|..+.++.. .. ......|+|.++..+|+|.|+|+|+|.+|+++.++.+.
T Consensus 2 ~i~~~v~--G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVK--GNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEe--EeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 4789998 999999999999999987766432 11 12346899999999999999999999999999888765
No 60
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.55 E-value=6.1e-14 Score=114.22 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=69.5
Q ss_pred Ceeee--cCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 692 PQFTS--EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 692 P~~~~--~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
|.|.. .+.++ .+.+|++++|.|.+. |. .|.|.|+|+|..+... ++.+..+++ .|.|.+++++|+|.|+|.|
T Consensus 2 p~~~~~~~~~~~-~v~~g~~v~l~C~a~--g~-~p~i~W~kng~~l~~~-~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a 74 (91)
T cd05740 2 PVINSNNSVGNQ-PPEDNQPVTLTCEAE--GQ-ATYIWWVNNGSLLVPP-RLQLSNDNR--TLTFNNVTRSDTGHYQCEA 74 (91)
T ss_pred CEeecccccCcc-ccccCCcEEEEEEeC--CC-CCEEEEEECCEECCCC-CEEEeCCCC--EEEECcCChhhCEEEEEEE
Confidence 55543 34466 899999999999999 88 9999999999988654 455444444 7999999999999999999
Q ss_pred EcCCccE-EEEEEEEE
Q psy2166 770 TNKWGQA-EISVNLEC 784 (805)
Q Consensus 770 ~N~~G~~-~~~~~l~V 784 (805)
.|.+|.. +..+.|.|
T Consensus 75 ~N~~G~~~S~~~~L~V 90 (91)
T cd05740 75 SNEVSNMTSDPYILNV 90 (91)
T ss_pred EcCCCCEEeeeEEEEe
Confidence 9999964 45777776
No 61
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.55 E-value=2.2e-14 Score=109.74 Aligned_cols=70 Identities=26% Similarity=0.279 Sum_probs=59.9
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
+.|.|.+. |.|.|.++|+|||+++..+.++ ..+ ..|.|.++..+|+|.|+|.|.|.+|..+...+++|++
T Consensus 1 ~~~~c~v~--G~P~P~v~W~k~g~~l~~~~~~---~~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~v 70 (70)
T cd05864 1 VKIPVKYY--GYPPPEVKWYKNGQLIVLNHTF---KRG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLVV 70 (70)
T ss_pred CEEEeEEE--EeCCCEEEEEECCEECCCCCEE---ccC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEEC
Confidence 47999999 9999999999999999765432 222 2699999999999999999999999888888888764
No 62
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.54 E-value=2.8e-14 Score=110.72 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=65.4
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
|+++.|.|.+. |.|.|+|+|+|+++.+..+.++.+..++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~--g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPK--AAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecc--eeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 78999999999 7788999999999998877788765543 4999999999999999999999999999998875
No 63
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.54 E-value=5.6e-14 Score=111.32 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=60.0
Q ss_pred EEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-------CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 711 HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-------FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 711 ~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
.|.|.+. |+|.|.|+|+|||+++..+.++.+... .....|+|.++..+|+|.|+|.|+|.+|.+..++.|.
T Consensus 2 ~i~~~v~--G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVR--GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeE--eeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 4789999 999999999999999988775443211 2345799999999999999999999999999988775
No 64
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.54 E-value=3.8e-14 Score=112.39 Aligned_cols=75 Identities=27% Similarity=0.307 Sum_probs=64.3
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe-EEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
|+.+.|.|.+. |.|.|.|.|+++|..+...... ...... ..|.|.+++.+|+|.|+|.|.|.+|....++.|.|.
T Consensus 1 G~~~~l~C~~~--g~P~p~i~W~~~g~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAE--GIPQPTITWRLNGVPIEELPPDPRRRVDG--GTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEce--eeCCCEEEEEECCEECCCCCCcceEEccC--CEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 78999999998 9999999999999988765433 222223 379999999999999999999999999999999883
No 65
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.54 E-value=1.3e-13 Score=113.62 Aligned_cols=86 Identities=27% Similarity=0.361 Sum_probs=65.9
Q ss_pred CeeeecCCcccccCCC---CeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCC-CCCCEEEEE
Q psy2166 692 PQFTSEFQHLSNLSEG---EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTK-IEDTGVYTC 767 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G---~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C 767 (805)
|.|...|.+. .+.+| +.++|.|.+. |+|.|.|+|++||..+............+ .|.|.++. .+|+|.|+|
T Consensus 2 P~f~~~P~~~-~~~~~~~g~~v~l~C~a~--g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C 76 (94)
T cd05850 2 PVFEEQPSSL-LFPEGSPEEKVTLGCRAR--ASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQC 76 (94)
T ss_pred CeeEECCCCE-EecCCCCCCeEEEEeEce--eCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEE
Confidence 6677777777 55555 6899999999 99999999999999987543322223334 68898765 699999999
Q ss_pred EEEcCCccEEE-EEEE
Q psy2166 768 RATNKWGQAEI-SVNL 782 (805)
Q Consensus 768 ~a~N~~G~~~~-~~~l 782 (805)
.|+|.+|...+ .+.|
T Consensus 77 ~A~N~~G~~~s~~a~l 92 (94)
T cd05850 77 LAINRCGTVVSREANL 92 (94)
T ss_pred EEEcCcCcEEEEEEEE
Confidence 99999997765 4444
No 66
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.53 E-value=3.7e-14 Score=111.28 Aligned_cols=74 Identities=31% Similarity=0.430 Sum_probs=64.8
Q ss_pred CCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 510 ~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
+|+++.|.|.+. |.|.|.|+|+|+|..+..+.++.+..++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~--g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQ--GYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECC--EecCCEEEEEECCEECCCCCCeEEccCC---eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 689999999999 7799999999999999876666544332 5999999999999999999999999999988875
No 67
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.53 E-value=3.8e-14 Score=109.74 Aligned_cols=71 Identities=25% Similarity=0.296 Sum_probs=61.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
+.|.|.+. |.|.|.++|+|||+++..+.++. ..+ ..|.|.++..+|+|.|+|.|.|.+|..+.++.++|.+
T Consensus 1 ~~l~c~v~--g~P~p~v~W~k~g~~l~~~~~~~--~~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~v 71 (71)
T cd04976 1 VRLPVKVK--AYPPPEIQWYKNGKLISEKNRTK--KSG--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLVV 71 (71)
T ss_pred CEEEeEEE--EeCCCEEEEEECCEECCCCCEEE--cCC--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEEC
Confidence 47999999 99999999999999998775432 222 3799999999999999999999999998888888753
No 68
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.53 E-value=7.5e-14 Score=108.85 Aligned_cols=73 Identities=26% Similarity=0.355 Sum_probs=62.7
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccC-CCceEEEeeC-CEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPH-GHRYRTFHDF-GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
|+|.|.+. |.|.|.++|+|+|.++.. ..++.+..++ +...|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~--G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVS--GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEe--EecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999 789999999999999975 3566665443 4557999999999999999999999999999999875
No 69
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.52 E-value=3.6e-14 Score=109.50 Aligned_cols=69 Identities=28% Similarity=0.421 Sum_probs=61.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
+.|.|.+. |.|.|.|+|+|+|..+..+.++.+..+ + .|.|.++..+|+|.|+|.|.|.+|..+.++.|+
T Consensus 1 v~L~C~~~--g~P~p~i~W~k~g~~~~~~~~~~~~~~-~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 1 VQIPCSAQ--GDPEPTITWNKDGVQVTESGKFHISPE-G--YLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred CEeEecce--EeCCCEEEEEECCEECCCCCCEEECCC-C--EEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 57999999 999999999999999988777765433 3 799999999999999999999999999988874
No 70
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.52 E-value=8.1e-14 Score=110.06 Aligned_cols=72 Identities=19% Similarity=0.347 Sum_probs=58.5
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCC-CeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASH-RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
++|.|.+. |.|.|.|+|+|+|.++..+. ++.+.... ..|.|.++..+|+|.|+|.|.|.+|....+..++|.
T Consensus 1 v~L~C~~~--g~P~p~v~W~k~g~~l~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHID--GHPRPTYQWFRDGTPLSDGQGNYSVSSKE--RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEee--ecCCCcEEEEECCEECCCCCccEEEeCCC--CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 57999999 99999999999999987664 33333333 379999999999999999999999988665555554
No 71
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.52 E-value=1.1e-13 Score=117.31 Aligned_cols=97 Identities=19% Similarity=0.276 Sum_probs=73.0
Q ss_pred CCCeeeecCCccccc---CCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEE--eeC--cEEEEEEcCCC-CC
Q psy2166 690 RPPQFTSEFQHLSNL---SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTV--HAF--GMVVLEILGTK-IE 760 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v---~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~--~~~--~~~~L~i~~v~-~~ 760 (805)
.+|.|...+.....+ ..|..++|.|.+. |.|.|.+.|+|||..+... .++... ..+ ...+|+|.+++ .+
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~--G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~ 80 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQ--GVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAAL 80 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECc--ccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccC
Confidence 355565554432122 2568999999999 9999999999999998754 344322 111 13579999997 58
Q ss_pred CCEEEEEEEEcCCccEEEEEEEEEEEeC
Q psy2166 761 DTGVYTCRATNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 761 d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 788 (805)
|.|.|+|.|.|.+|.+..++.|.|+..|
T Consensus 81 D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 81 DYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 9999999999999999999999997543
No 72
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.51 E-value=9.6e-14 Score=106.43 Aligned_cols=69 Identities=20% Similarity=0.389 Sum_probs=58.7
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
|+.+.|.|.+. |.|.|.|+|+|+|.++....++.. +...|+|.++. |+|.|+|.|.|.+|....+++|+
T Consensus 1 G~~v~L~C~a~--G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVAV--GAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEee--ecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 78899999999 999999999999999876655432 23379999974 89999999999999999988874
No 73
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.51 E-value=1.9e-13 Score=113.96 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=72.1
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCe-EEEEEECCEEccCC--CCeEEEee----CcEEEEEEcCCCC-CCC
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEAS--HRIRTVHA----FGMVVLEILGTKI-EDT 762 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~--~~~~~~~~----~~~~~L~i~~v~~-~d~ 762 (805)
||.|.. +.+. .+.+|+++.|.|.+. |.|.| .|.|++++..+... .++.+... +...+|.|.++.. +|.
T Consensus 2 pp~i~~-~~~~-~~~~G~~v~L~C~~~--g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~ 77 (98)
T cd05758 2 PPIITS-EATQ-YAILGDKGRVECFIF--STPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQ 77 (98)
T ss_pred CCeEcC-CCcE-EEeCCCcEEEEEEEc--ccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccc
Confidence 567754 4455 789999999999999 99999 69999999988764 46665443 2235899999998 569
Q ss_pred EEEEEEEEcCCccEEEEEEE
Q psy2166 763 GVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 763 G~Y~C~a~N~~G~~~~~~~l 782 (805)
|.|+|.|.|..|.++..++|
T Consensus 78 G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 78 TSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred eeEEEEEEcCCCcccEEEEe
Confidence 99999999999999998876
No 74
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.51 E-value=8.9e-14 Score=110.46 Aligned_cols=75 Identities=16% Similarity=0.346 Sum_probs=65.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
.+.+|+.+.|.|.+. |. .+.|.|+|||.+|..+.++.+. ++ .|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 5 ~~~~G~~v~l~C~~~--~~-~~~v~W~k~g~~l~~~~~~~~~--~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 5 SAHPGDLLQLRCRLR--DD-VQSINWTKDGVQLGENNRTRIT--GE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred EecCCCCEEEEEEec--CC-CceEEEeeCCcCCCCCceEEEe--CC--EEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 789999999999998 75 5689999999999887777653 33 79999999999999999999999999888887
Q ss_pred EE
Q psy2166 783 EC 784 (805)
Q Consensus 783 ~V 784 (805)
+|
T Consensus 78 ~V 79 (79)
T cd04973 78 NV 79 (79)
T ss_pred eC
Confidence 65
No 75
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.51 E-value=1.8e-13 Score=107.55 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=66.8
Q ss_pred eEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 513 SAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 513 ~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
.+.|.|.+. |.|.|.++|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~--G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPIS--GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEe--eeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 478999999 78999999999999998777887777677788999999999999999999999999999888875
No 76
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.51 E-value=2.3e-13 Score=111.56 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=68.9
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
.+.+|+.+.|.|.+. |.|.|.++|+++|..+................|.|.++..+|.|.|+|.|.|..|.....+.|
T Consensus 11 ~v~~G~~v~l~C~~~--G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 11 VVYEGGTATIRCTAE--GSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred EEcCCCcEEEEEEEE--EcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 388999999999999 789999999999999876555443444456689999999999999999999999999999888
Q ss_pred EE
Q psy2166 587 KC 588 (805)
Q Consensus 587 ~V 588 (805)
.|
T Consensus 89 ~v 90 (90)
T cd04972 89 TV 90 (90)
T ss_pred eC
Confidence 65
No 77
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.50 E-value=2e-13 Score=111.73 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=65.6
Q ss_pred CCeeeecCCcccccCC---CCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEeeCcEEEEEEcCCC-CCCCEEE
Q psy2166 691 PPQFTSEFQHLSNLSE---GEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTK-IEDTGVY 765 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~---G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~-~~d~G~Y 765 (805)
+|.|...|.++ .+.+ |+.+.|.|.+. |+|.|.|+|+|++..+... .++.+ .++ .|.|.++. .+|+|.|
T Consensus 1 ~P~f~~~P~~~-~~~~~~~~~~v~l~C~a~--G~P~P~i~W~k~~~~i~~~~~~~~~--~~g--~L~I~~~~~~~D~G~Y 73 (93)
T cd05849 1 GPVFEEQPIDT-IYPEESTEGKVSVNCRAR--ANPFPIYKWRKNNLDIDLTNDRYSM--VGG--NLVINNPDKYKDAGRY 73 (93)
T ss_pred CCEEEECCCCE-EecCCccCCeEEEeCcCc--cCCCCEEEEEECCEEccCCCCeEEE--ECC--EEEECcCCcCCCCEEE
Confidence 36777777776 5544 44899999999 9999999999999988643 44432 334 69999985 6899999
Q ss_pred EEEEEcCCccEEE-EEEE
Q psy2166 766 TCRATNKWGQAEI-SVNL 782 (805)
Q Consensus 766 ~C~a~N~~G~~~~-~~~l 782 (805)
+|.|+|.+|...+ .+.|
T Consensus 74 ~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 74 VCIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEEeCcceEEEccEEE
Confidence 9999999997654 4444
No 78
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.50 E-value=9.8e-14 Score=107.70 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=59.3
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
+.|.|.+. |.|.|.|.|+|++..+..+. .......+ .|+|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 ~~L~C~~~--G~P~P~v~W~k~~~~~~~~~-~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAE--GLPTPEVHWDRIDGPLSPNR-TKKLNNNK--TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEee--EecCCeEEEEECCcCCCCCc-eeEEcCCC--EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 47999999 99999999999998876543 22233333 7999999999999999999999999999999887
No 79
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.50 E-value=2.8e-13 Score=112.74 Aligned_cols=91 Identities=16% Similarity=0.277 Sum_probs=72.7
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-----CceEEEeeCCEEEEEEccCCCCCCEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-----HRYRTFHDFGIVILDILYCYEENSGVY 569 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y 569 (805)
.|+|........ +..|+.++|.|.+. |.|.|.++|+++++.+... .++.+........|.|.+++.+|+|.|
T Consensus 2 ~p~i~~~~~~~~-~~~g~~v~l~C~~~--G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 2 KPKITYVENQTA-MELEEQITLTCEAS--GDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred CceEEEccCceE-EEcCCCEEEEEEee--EeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEE
Confidence 467766544433 56689999999999 7788999999999887532 234444445557899999999999999
Q ss_pred EEEEEcCCcceEEEEEEEE
Q psy2166 570 ECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 570 ~C~a~n~~g~~~~~~~l~V 588 (805)
+|.|.|..|....++.|.|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999999988875
No 80
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.49 E-value=2.5e-13 Score=105.39 Aligned_cols=71 Identities=25% Similarity=0.472 Sum_probs=62.0
Q ss_pred eEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 513 SAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 513 ~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
+++|.|.+. |.|.|.++|+|+|..+..+.++.+..++. |.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~--G~P~p~v~W~k~g~~~~~~~~~~~~~~~~---l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVT--GKPTPTVKWVKNGDMVIPSDYFKIVKEHN---LQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEE--EeCCCEEEEEECCeECCCCCCEEEEecCC---EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999 78999999999999998777776655544 778899999999999999999999999998875
No 81
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.49 E-value=1.2e-13 Score=108.94 Aligned_cols=72 Identities=29% Similarity=0.439 Sum_probs=59.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccC---CCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEA---SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~---~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
++|.|.+. |.|.|.|+|+|+|....+ ..++.+...++ .|.|.++..+|+|.|+|.|.|.+|....+++|.|+
T Consensus 1 a~l~C~~~--G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 1 ARLECAAT--GHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred CEeEeecc--cccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 47999998 999999999999864322 23444433334 79999999999999999999999999999999883
No 82
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.49 E-value=3.3e-13 Score=105.76 Aligned_cols=73 Identities=26% Similarity=0.368 Sum_probs=62.6
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccC-CCceEEEee-CCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPH-GHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
++|.|.+. |.|.|.++|+|||..+.. ..++.+..+ .+...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~--G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVS--AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEe--ecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 57999999 789999999999999974 456665543 35567999999999999999999999999999998875
No 83
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.49 E-value=4.4e-13 Score=110.09 Aligned_cols=80 Identities=25% Similarity=0.471 Sum_probs=66.2
Q ss_pred cccCCCeEEEEEEEeeCCCC-CcEEEEEE-CCEEccC-CCceEEEe-eCCEEEEEEccCCCCCCEEEEEEEEcCC-cceE
Q psy2166 507 QLKEGQSAHFEARLTPVTDP-DLVVEWFY-NGKKLPH-GHRYRTFH-DFGIVILDILYCYEENSGVYECRATNKY-GSDV 581 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p-~~~v~W~~-~g~~l~~-~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~-g~~~ 581 (805)
.+.+|++++|.|.+. |.| +|.++|++ +|+.+.. +.++.+.. ++..+.|.|.+++.+|+|.|+|.|+|.. |...
T Consensus 11 ~v~~G~~v~l~C~v~--G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~ 88 (96)
T cd05865 11 EISVGESKFFLCQVA--GEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE 88 (96)
T ss_pred EECCCCeEEEEEEEe--CCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence 388999999999999 677 47999998 8887755 44555433 3345789999999999999999999997 8889
Q ss_pred EEEEEEE
Q psy2166 582 TKASLKC 588 (805)
Q Consensus 582 ~~~~l~V 588 (805)
.++.|.|
T Consensus 89 ~s~~l~v 95 (96)
T cd05865 89 ATVNVKI 95 (96)
T ss_pred EEEEEEE
Confidence 8888876
No 84
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.48 E-value=2.6e-13 Score=112.63 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=68.9
Q ss_pred ccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEee------CCEEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD------FGIVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 506 ~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
..+..|+.++|.|.+. |.|.|.+.|+|||++|..+.+...... ...+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 13 ~~~~~~~~~~l~~~v~--g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 13 EFANLHEVKEFVVEVE--AYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred EEEecCCcEEEEEEEE--EeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 3478899999999999 678889999999999986654433221 12457999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy2166 580 DVTKASLKCV 589 (805)
Q Consensus 580 ~~~~~~l~V~ 589 (805)
.+.++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999885
No 85
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.48 E-value=4.9e-13 Score=108.47 Aligned_cols=81 Identities=25% Similarity=0.386 Sum_probs=68.8
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-CceEEEe--e--CCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-HRYRTFH--D--FGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~--~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
|+.++|.|.+. |.|++.++|+|+++.+..+ .++.+.. . ...+.|.|.++..+|+|.|+|.|.|..|..+..+.
T Consensus 1 g~~~~l~C~~~--g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAH--GEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEEE--CCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 78999999999 7799999999999988643 4565432 1 22367999999999999999999999999999999
Q ss_pred EEEeeeee
Q psy2166 586 LKCVSKTN 593 (805)
Q Consensus 586 l~V~~~~~ 593 (805)
|.|..+|.
T Consensus 79 L~V~~~P~ 86 (88)
T cd05735 79 LTVQEPPD 86 (88)
T ss_pred EEEeCCCC
Confidence 99998764
No 86
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.48 E-value=2.9e-13 Score=109.61 Aligned_cols=78 Identities=23% Similarity=0.251 Sum_probs=62.6
Q ss_pred CeEEEEEEEeecCCCCe--EEEEEECCEEccCCC---CeE-EEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 708 EIAHFEASLIPVGDQTM--TVEFLYNGKPIEASH---RIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p~~--~v~W~~~g~~l~~~~---~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
+++.|.|.+. |.|.| .+.|+|+|+++.... ++. .........|.|.+++.+|+|.|+|.|.|.+|..+.++.
T Consensus 1 e~~~L~C~~~--g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHAS--HDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEEe--cCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 4689999999 88877 679999999886432 221 112223347999999999999999999999999999999
Q ss_pred EEEEEe
Q psy2166 782 LECVVW 787 (805)
Q Consensus 782 l~V~~~ 787 (805)
|.|..+
T Consensus 79 l~V~~p 84 (85)
T cd04970 79 LIVRGP 84 (85)
T ss_pred EEEECC
Confidence 999764
No 87
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.48 E-value=3.9e-13 Score=111.65 Aligned_cols=80 Identities=23% Similarity=0.344 Sum_probs=68.5
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
.+..|++++|.|.+. |.|.|.++|+|+|..+... .++.... ....|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 14 ~~~~G~~v~L~C~~~--g~P~p~v~W~k~g~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 14 TANLGQSVTLACDAD--GFPEPTMTWTKDGEPIESGEEKYSFNE--DGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred EEeCCCCEEEEEecc--EeCCCEEEEEECCEECcCCCCEEEEeC--CCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 378999999999999 7789999999999999765 4443332 2346999999999999999999999999999999
Q ss_pred EEEee
Q psy2166 586 LKCVS 590 (805)
Q Consensus 586 l~V~~ 590 (805)
|.|.+
T Consensus 90 L~V~~ 94 (95)
T cd05730 90 LKVFA 94 (95)
T ss_pred EEEEe
Confidence 99875
No 88
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.48 E-value=4e-13 Score=106.59 Aligned_cols=76 Identities=24% Similarity=0.327 Sum_probs=67.7
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
|++++|.|.+. |.|.|.++|++++..+....++.+...++...|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus 1 G~~v~l~C~~~--g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVAT--GVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEE--EecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 78999999999 77999999999999998877887777777788999999999999999999999999887776654
No 89
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.48 E-value=4.3e-13 Score=111.86 Aligned_cols=90 Identities=21% Similarity=0.353 Sum_probs=71.9
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEE--CCEEccC-----CCceEEEeeCCEEEEEEccCCCCCCE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY--NGKKLPH-----GHRYRTFHDFGIVILDILYCYEENSG 567 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~--~g~~l~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G 567 (805)
+|++.. +.+.. +.+|+.++|.|.+. |.|.|.++|+| +|..+.. +.++.+....+...|.|.+++.+|+|
T Consensus 2 ~p~i~~-~~~~~-~~~G~~v~l~C~~~--G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 2 QPHIIQ-LKNET-TVENGAATLSCKAE--GEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77 (98)
T ss_pred CCEEEe-eccEE-EcCCCcEEEEEecc--cCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence 566654 45544 88999999999999 78999999999 4555532 24666555455668999999999999
Q ss_pred EEEEEEEcCCcceEEEEEEEE
Q psy2166 568 VYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 568 ~Y~C~a~n~~g~~~~~~~l~V 588 (805)
.|+|.|.|..|....++.|.|
T Consensus 78 ~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCcceeEEEEeC
Confidence 999999999999998888764
No 90
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.48 E-value=2.9e-13 Score=109.35 Aligned_cols=81 Identities=31% Similarity=0.448 Sum_probs=68.7
Q ss_pred cCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 501 QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 501 ~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
.+.+.. +..|+.++|.|.+. |.|.|.+.|+|+|.++....++... ++ .|.|.++..+|+|.|+|.|.|..|..
T Consensus 5 ~p~~~~-~~~G~~~~l~C~~~--g~p~p~v~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 5 VISDTE-ADIGSSLRWECKAS--GNPRPAYRWLKNGQPLASENRIEVE--AG--DLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred cCCccE-EcCCCcEEEEEEee--EeCCCEEEEEECCEECCCCCeEEEe--CC--EEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 344443 89999999999999 7788999999999999877666542 23 59999999999999999999999999
Q ss_pred EEEEEEEE
Q psy2166 581 VTKASLKC 588 (805)
Q Consensus 581 ~~~~~l~V 588 (805)
..++.|.|
T Consensus 78 ~~~~~l~V 85 (85)
T cd05728 78 YASAELAV 85 (85)
T ss_pred EEEEEEEC
Confidence 99888875
No 91
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.48 E-value=2.5e-13 Score=107.40 Aligned_cols=74 Identities=27% Similarity=0.249 Sum_probs=62.8
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
+.|.|.+. |.|.|.|.|+|+++.+..+.+.++........|.|.++..+|+|.|+|.|.|..|.++.++.|.|+
T Consensus 1 ~~L~C~v~--g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAE--GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEee--ecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 47999999 999999999999999886654333333333479999999999999999999999999999999885
No 92
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.47 E-value=4.4e-13 Score=109.89 Aligned_cols=83 Identities=30% Similarity=0.494 Sum_probs=66.4
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE-CCEEccCCCCeEEEe-eCcEEEEEEcCCCCCCCEEEEEEEEcCCc-
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWG- 774 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G- 774 (805)
|.+. .+..|+++.|.|.+. |.|+ .|+|++ +|..+....++.+.. .....+|+|.+++.+|+|.|+|.|.|..|
T Consensus 7 p~~~-~v~~G~~~~l~C~~~--G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 7 PSQG-EISVGESKFFLCQVI--GEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred cCcE-EECCCCeEEEEEEeE--eeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 4455 899999999999999 8875 999998 777776656655443 34567899999999999999999999976
Q ss_pred cEEEEEEEEE
Q psy2166 775 QAEISVNLEC 784 (805)
Q Consensus 775 ~~~~~~~l~V 784 (805)
....++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 5667776654
No 93
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.47 E-value=2.4e-13 Score=102.43 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=56.4
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
++|.|.+. |.|.|.++|+|||++|... .....|.|.++..+|+|.|+|.|.|..|..+++..|.+.
T Consensus 1 ~~l~c~v~--g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVA--AYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEE--EeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 47999999 7899999999999999632 123469999999999999999999999988888777764
No 94
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.47 E-value=2.9e-13 Score=106.47 Aligned_cols=73 Identities=34% Similarity=0.522 Sum_probs=62.2
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEE-CCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
|+.+.|.|.+. |.|.|.+.|++ ++..+....+..... .+ .|.|.++..+|+|.|+|.|.|..|..+.+++|.|
T Consensus 1 G~~~~l~C~~~--g~P~p~v~W~~~~~~~~~~~~~~~~~~-~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKAR--GDPEPAIHWISPDGKLISNSSRTLVYD-NG--TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEcc--CcCCCEEEEEeCCCEEecCCCeEEEec-CC--EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 78999999998 99999999997 677777665554333 34 6999999999999999999999999999888875
No 95
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.47 E-value=2.7e-13 Score=104.83 Aligned_cols=69 Identities=28% Similarity=0.361 Sum_probs=59.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
++|.|.+. |.|+|.+.|+|++..+.. .++... ..+ .|.|.++..+|+|.|+|.|.|.+|....++.|.|
T Consensus 1 v~l~C~~~--g~P~p~v~W~k~~~~~~~-~~~~~~-~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVG--GDPVPTVLWRKEDGELPK-GRAEIL-DDK--SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECc--cCCCCEEEEEECCccCCC-CcEEEe-eCC--EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999998 999999999999887754 355444 333 6999999999999999999999999999998876
No 96
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.47 E-value=7.1e-13 Score=106.58 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=63.3
Q ss_pred CeEEEEEEEeeCCCCCcEEEEEECCEEccCC---CceEEE-eeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 512 QSAHFEARLTPVTDPDLVVEWFYNGKKLPHG---HRYRTF-HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~---~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
++++|.|.+.+.+.|.+.++|+|||.+|... .++... .......|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 4789999999443444479999999998542 344222 222335799999999999999999999999999999999
Q ss_pred Eeeee
Q psy2166 588 CVSKT 592 (805)
Q Consensus 588 V~~~~ 592 (805)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98754
No 97
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.47 E-value=8e-13 Score=107.30 Aligned_cols=84 Identities=25% Similarity=0.467 Sum_probs=69.6
Q ss_pred cCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEE-CCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 501 QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 501 ~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
.+.+.. +.+|++++|.|.+. |.|. .++|++ +|..+..+.++.+..++....|.|.++..+|+|.|+|.|+|..|.
T Consensus 6 ~~~~~~-v~~G~~v~l~C~~~--G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 6 SLSKVE-LSVGESKFFTCTAI--GEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred EecceE-EcCCCeEEEEEEEE--EeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 344443 88999999999999 6777 899998 588887777888776676778999999999999999999999998
Q ss_pred e-EEEEEEEE
Q psy2166 580 D-VTKASLKC 588 (805)
Q Consensus 580 ~-~~~~~l~V 588 (805)
. ..+..|.+
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 6 55666654
No 98
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.47 E-value=2.8e-13 Score=111.01 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=63.8
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEc--------cCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPI--------EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 778 (805)
|+.++|.|.+. |.|.|.|.|+|+|..+ ....++.+.. .+ .|+|.+++.+|+|.|+|.|.|.+|....
T Consensus 1 G~~v~L~C~~~--g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEAT--GNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-TG--DLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEECC--ccCCCEEEEEeCCCcceeecccCCCCCCeEEECC-CC--eEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 78999999998 9999999999998643 2234554432 23 6999999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy2166 779 SVNLECVVW 787 (805)
Q Consensus 779 ~~~l~V~~~ 787 (805)
.+.|.|...
T Consensus 76 ~~~l~V~~~ 84 (90)
T cd05726 76 KAYLEVTDV 84 (90)
T ss_pred EEEEEEeec
Confidence 999999874
No 99
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.47 E-value=3.4e-13 Score=110.42 Aligned_cols=76 Identities=26% Similarity=0.378 Sum_probs=61.1
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEE----CCEEccCCCC--eEEEee-------CcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLY----NGKPIEASHR--IRTVHA-------FGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~----~g~~l~~~~~--~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
|+.+.|.|.+. |.|.|.|+|+| +|..+.+..+ ...... .....|.|.+++.+|+|.|+|.|.|.+
T Consensus 1 G~~v~L~C~~~--g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKVY--SDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEEe--cCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 78999999999 99999999998 4555544332 111111 123579999999999999999999999
Q ss_pred ccEEEEEEEEE
Q psy2166 774 GQAEISVNLEC 784 (805)
Q Consensus 774 G~~~~~~~l~V 784 (805)
|....++.|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99999999998
No 100
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.46 E-value=2e-13 Score=110.26 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=66.2
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
.+..|+.+.|.|.+. |.|.|.+.|+|+|..+....... .......|.|.++..+|+|.|+|.|.|..|..+.+++|
T Consensus 5 ~~~~G~~v~L~C~~~--g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 5 ARPVGSSVRLKCVAS--GNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eccCCCeEEEEEEee--EeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 577899999999998 99999999999999887654432 22334589999999999999999999999999888887
Q ss_pred EE
Q psy2166 783 EC 784 (805)
Q Consensus 783 ~V 784 (805)
.|
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 65
No 101
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.46 E-value=6.7e-13 Score=108.79 Aligned_cols=85 Identities=25% Similarity=0.425 Sum_probs=71.3
Q ss_pred CCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEe-eCCEEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 502 ISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH-DFGIVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 502 ~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
++....+.+|+.+.|.|.+. |.|.|.+.|+|+|..+..+.++.+.. ++....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~--g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVF--GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE 84 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEE--EeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce
Confidence 34444589999999999998 67888999999999998776665533 3344579999999999999999999999999
Q ss_pred EEEEEEEE
Q psy2166 581 VTKASLKC 588 (805)
Q Consensus 581 ~~~~~l~V 588 (805)
..++.|.|
T Consensus 85 ~~~~~v~~ 92 (92)
T cd05891 85 TVDVTVSV 92 (92)
T ss_pred eeEEEEEC
Confidence 98888765
No 102
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.46 E-value=1.7e-13 Score=112.01 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=59.8
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEEC----CEEccCCCC--eEEEe-------eCcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYN----GKPIEASHR--IRTVH-------AFGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~----g~~l~~~~~--~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
|+.+.|.|.+. |.|.|.|+|+|+ |..+..... ..... .+...+|.|.+++.+|+|.|+|.|.|.+
T Consensus 1 G~~v~l~C~v~--g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 1 GSDVEFHCKVY--SDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred CCcEEEEEEEe--CCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence 78899999999 999999999996 343332211 11111 1223479999999999999999999999
Q ss_pred ccEEEEEEEEE
Q psy2166 774 GQAEISVNLEC 784 (805)
Q Consensus 774 G~~~~~~~l~V 784 (805)
|....++.|+|
T Consensus 79 G~~~~sa~L~V 89 (90)
T cd04974 79 GPSHHSAWLTV 89 (90)
T ss_pred CcccCCEEEEe
Confidence 99999999998
No 103
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.46 E-value=6e-13 Score=108.68 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=71.0
Q ss_pred eEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeC
Q psy2166 67 VFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 67 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 146 (805)
.++...+.+..+.+|+.++|.|.+. |.|.|.++|+|++..+....++.. .+ ..|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~--g~P~p~v~W~k~~~~~~~~~~~~~--~~--~~L~i~~v~~~D~G~Y~C~a~N~ 75 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFAL--GNPVPQIKWRKVDGSMPSSAEISM--SG--AVLKIPNIQFEDEGTYECEAENI 75 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEee--EeCCCEEEEEECCCcCCCccEEEE--eC--CEEEECCCCcccCEEEEEEEEEC
Confidence 3444455578899999999999998 689999999999887765544432 22 28999999999999999999999
Q ss_pred CeeEEEEEEEEEe
Q psy2166 147 AGETFTSTTIYCS 159 (805)
Q Consensus 147 ~g~~~~~~~l~V~ 159 (805)
.|.....+.|+|+
T Consensus 76 ~G~~~~~~~l~V~ 88 (88)
T cd04968 76 KGKDTHQGRIYVQ 88 (88)
T ss_pred CCcEEEEEEEEEC
Confidence 9999988888873
No 104
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.46 E-value=3.6e-13 Score=109.83 Aligned_cols=81 Identities=31% Similarity=0.459 Sum_probs=66.0
Q ss_pred CCcccccCCCCeEEEEEEE-eecCCCCeEEEEEECCEEccCC-CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 698 FQHLSNLSEGEIAHFEASL-IPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~-~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
|.+. .+.+|+++.|.|.+ . |.|.|.+.|+|+|..+... .++.+.. .+ .|.|.++..+|+|.|+|.|.|.+|.
T Consensus 3 p~~~-~~~~G~~v~l~C~~~~--g~p~p~i~W~k~g~~~~~~~~~~~~~~-~~--~L~I~~~~~~D~G~Y~C~a~N~~G~ 76 (86)
T cd05724 3 PSDT-QVAVGEMAVLECSPPR--GHPEPTVSWRKDGQPLNLDNERVRIVD-DG--NLLIAEARKSDEGTYKCVATNMVGE 76 (86)
T ss_pred CccE-EEeCCCCEEEEEECCC--CCCCCEEEEEECCEECCCCCCCEEEcc-CC--EEEEeECCcccCEEEEEEEEeccCc
Confidence 3455 88999999999998 6 8999999999999998873 4444333 33 6999999999999999999999997
Q ss_pred E-EEEEEEEE
Q psy2166 776 A-EISVNLEC 784 (805)
Q Consensus 776 ~-~~~~~l~V 784 (805)
. +..+.|.|
T Consensus 77 ~~s~~~~l~V 86 (86)
T cd05724 77 RESAAARLSV 86 (86)
T ss_pred eeeeeEEEEC
Confidence 5 55666654
No 105
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.46 E-value=4.2e-13 Score=106.25 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=65.6
Q ss_pred CeEEEEEEEeeCCCCCcEEEEEECCEEccC---CCceEEEee-CCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 512 QSAHFEARLTPVTDPDLVVEWFYNGKKLPH---GHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~---~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
+++.|.|.+.+.+.+++.|.|+|||++|.. +.++..... .....|.|.+++.+|+|+|+|.|.|..+....++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999855677999999999999962 234443211 1223599999999999999999999999999999999
Q ss_pred Eeeee
Q psy2166 588 CVSKT 592 (805)
Q Consensus 588 V~~~~ 592 (805)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99765
No 106
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.45 E-value=9.1e-13 Score=103.98 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=61.7
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-EEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
|+.++|.|.+. |.|.|+++|+|||.++...... .....++ .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 1 G~~v~l~C~~~--G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 76 (76)
T cd05867 1 GETARLDCQVE--GIPTPNITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV 76 (76)
T ss_pred CCeEEEEEEee--EeCCCeEEEEECCEECCCCCCCceEEeeCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence 78999999999 7788999999999998654211 1122222 59999999999999999999999999999988873
No 107
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.45 E-value=4.8e-13 Score=104.70 Aligned_cols=73 Identities=25% Similarity=0.413 Sum_probs=64.7
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
|+.+.|.|.+. |.|.|.++|+|++..+..+.++.+..++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~--g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPK--AAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeee--EcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 78999999998 6788999999999999877777754443 4999999999999999999999999999988875
No 108
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.45 E-value=7.3e-13 Score=110.51 Aligned_cols=90 Identities=20% Similarity=0.315 Sum_probs=72.2
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-----CceEEEeeCCEEEEEEccCCCCCCEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-----HRYRTFHDFGIVILDILYCYEENSGVY 569 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y 569 (805)
+|+|. .+.+.. +.+|++++|.|.+. |.|.|.++|++++..+... .++.+........|.|.+++.+|+|.|
T Consensus 2 ~P~i~-~~~~~~-~~~g~~v~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 77 (96)
T cd05732 2 QPKIT-YLENQT-AVELEQITLTCEAE--GDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY 77 (96)
T ss_pred Cccce-ecCcee-EecCCcEEEEEEEe--EcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEe
Confidence 46665 344443 88999999999999 6788899999999776542 244444445567899999999999999
Q ss_pred EEEEEcCCcceEEEEEEEE
Q psy2166 570 ECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 570 ~C~a~n~~g~~~~~~~l~V 588 (805)
+|.|.|..|....++.|.|
T Consensus 78 ~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCCcEEEEEEeC
Confidence 9999999999988888764
No 109
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.45 E-value=3.5e-13 Score=106.37 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=60.1
Q ss_pred ecCCcccccCCCCeEEEEEEEeecCCCCe-EEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 696 SEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 696 ~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
..|.+. .+.+|+.+.|.|.+. |+|.| .|.|+|||.++..... .....|.|.++. |+|.|.|.|+|.+|
T Consensus 3 ~~P~~~-~v~~G~~v~l~C~a~--G~P~P~~I~W~k~g~~l~~~~~------~~~s~L~i~~~~--d~g~Y~C~A~N~~G 71 (81)
T cd05749 3 VEPEDL-SVTANTPFNLTCQAV--GPPEPVEILWWQGGSPLGDPPA------PSPSVLNVPGLN--ETSKFSCEAHNAKG 71 (81)
T ss_pred CCCCce-EEcCCCCEEEEEEee--eecCCeEEEEEECCEECCCCCC------CCCCEEEEcccc--CCeEEEEEEEeccC
Confidence 445666 899999999999999 99999 7999999999865211 112379998874 78999999999999
Q ss_pred cEEE-EEEE
Q psy2166 775 QAEI-SVNL 782 (805)
Q Consensus 775 ~~~~-~~~l 782 (805)
.... .++|
T Consensus 72 ~~~s~~a~~ 80 (81)
T cd05749 72 VTTSRTGTV 80 (81)
T ss_pred cEEeeeEEe
Confidence 6654 5554
No 110
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.45 E-value=6.2e-13 Score=104.59 Aligned_cols=75 Identities=23% Similarity=0.380 Sum_probs=61.9
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-EEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
|++++|.|.+. |.|.|+|+|+|||+++...... ....+++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 1 g~~~~l~C~a~--G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRAN--GNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEee--EeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 78899999999 7899999999999998643221 1122333 58999999999999999999999999999999873
No 111
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.44 E-value=1.2e-12 Score=110.87 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=74.8
Q ss_pred CCCCceEecCCCcccc---cCCCeEEEEEEEeeCCCCCcEEEEEECCEEccC-CCceEEE--eeC--CEEEEEEccCC-C
Q psy2166 493 AEAPKFITQISDVTQL---KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH-GHRYRTF--HDF--GIVILDILYCY-E 563 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v---~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~-~~~~~~~--~~~--~~~~L~i~~v~-~ 563 (805)
..+|.|...+.....+ ..|..++|.|.+. |.|.+.++|+|||..|.. +.++.+. ..+ ..+.|.|.++. .
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~--G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~ 79 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQ--GVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAA 79 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECc--ccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCcc
Confidence 4567776654422222 2568999999999 789999999999999864 3455432 111 24679999987 5
Q ss_pred CCCEEEEEEEEcCCcceEEEEEEEEeeee
Q psy2166 564 ENSGVYECRATNKYGSDVTKASLKCVSKT 592 (805)
Q Consensus 564 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 592 (805)
+|.|.|+|.|.|..|.....+.|.|..+|
T Consensus 80 ~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 80 LDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 89999999999999999999999998765
No 112
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.44 E-value=5.8e-13 Score=110.47 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=65.6
Q ss_pred eecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC--eEEEeeCcEEEEEEcCC-----CCCCCEEEEE
Q psy2166 695 TSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR--IRTVHAFGMVVLEILGT-----KIEDTGVYTC 767 (805)
Q Consensus 695 ~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v-----~~~d~G~Y~C 767 (805)
...|.+. .+.+|+++.|.|.+. |.|.|.|+|+|||..+..... ..+..+ + .|.|.++ .++|+|.|+|
T Consensus 3 ~~~P~~~-~~~~g~~v~l~C~v~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-~--~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 3 LSEPSDI-VAVRGGPVVLNCSAE--GEPPPKIEWKKDGVLLNLVSDERRQQLPN-G--SLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred EECCCCe-EEcCCCCEEEeeecc--cCCCCEEEEEECCeECccccCcceEEccC-C--eEEEeeeeccCCCCCcCEEEEE
Confidence 3445666 788999999999999 999999999999999876543 333333 3 3556555 6899999999
Q ss_pred EEEcC-CccE-EEEEEEEE
Q psy2166 768 RATNK-WGQA-EISVNLEC 784 (805)
Q Consensus 768 ~a~N~-~G~~-~~~~~l~V 784 (805)
.|.|. +|.. +..+.|+|
T Consensus 77 ~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 77 VAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEECCccCcEEEeeeEEeC
Confidence 99999 9976 66777765
No 113
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.44 E-value=4.8e-13 Score=104.80 Aligned_cols=70 Identities=26% Similarity=0.395 Sum_probs=58.8
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEcc--CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc-EEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIE--ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-AEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V 784 (805)
++|.|.+. |.|.|.|+|+|++.++. ...++.. ...+ .|.|.++..+|+|.|+|.|.|.+|. .+.++.|.|
T Consensus 1 a~l~C~~~--G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAAS--GNPDPEITWFKDFLPVDTTSNGRIKQ-LRSG--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEe--EecCCEEEEEECCEECccCCCCCEEE-cCCc--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47999998 99999999999999887 3445543 2333 5999999999999999999999997 578888877
No 114
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.43 E-value=5.6e-13 Score=104.08 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=58.8
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
+.|.|.+. |.|.|.+.|+|++..+... +..... ....|.|.+++.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 v~l~C~~~--g~P~p~v~W~k~~~~~~~~-~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAE--GLPTPEISWIKIGGELPAD-RTKFEN--FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEee--EecCCeEEEEECCeECCCC-ceeEec--CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47999999 9999999999999887643 322222 2337999999999999999999999999999998887
No 115
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.43 E-value=6.1e-13 Score=105.18 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=59.7
Q ss_pred EEEEEEEeecC-CCCeEEEEEECCEEccCCCCeE---EEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 710 AHFEASLIPVG-DQTMTVEFLYNGKPIEASHRIR---TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 710 ~~l~C~~~~~g-~p~~~v~W~~~g~~l~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
+.|.|.+. | .|.|.++|+|+|+.+..+.+.. +........|.|.+++.+|+|.|+|.|.|.+|.+..++.+
T Consensus 1 ~~l~C~~~--g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~~ 75 (75)
T cd05750 1 LVLKCEAT--SEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTANV 75 (75)
T ss_pred CEEEEEcc--CCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEeC
Confidence 46999999 8 9999999999999998765432 3344456789999999999999999999999998887753
No 116
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.43 E-value=1.7e-12 Score=105.38 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=66.1
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE-EEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
+.+|+.++|.|.+. |.|.|.++|+|+|..+..+.+.. .........|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 6 v~~G~~~~L~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 6 VPAANTVKFRCPAA--GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred cCCCCEEEEEEEcC--CCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 78999999999998 77999999999999997654432 1112234469999999999999999999999999999888
Q ss_pred EE
Q psy2166 587 KC 588 (805)
Q Consensus 587 ~V 588 (805)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 75
No 117
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.42 E-value=1.2e-12 Score=104.01 Aligned_cols=78 Identities=21% Similarity=0.422 Sum_probs=65.9
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEE
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 153 (805)
....+.+|+.++|.|.+. +. .+.|.|+|||.+|..+.++.+..+ +|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 2 ~~~~~~~G~~v~l~C~~~--~~-~~~v~W~k~g~~l~~~~~~~~~~~----~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~ 74 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLR--DD-VQSINWTKDGVQLGENNRTRITGE----EVQIKDAVPRDSGLYACVTSSPSGSDTTY 74 (79)
T ss_pred CcEEecCCCCEEEEEEec--CC-CceEEEeeCCcCCCCCceEEEeCC----EEEECCCChhhCEEEEEEEeCCCCcccEE
Confidence 356889999999999998 34 568999999999988878776532 79999999999999999999998887777
Q ss_pred EEEEE
Q psy2166 154 TTIYC 158 (805)
Q Consensus 154 ~~l~V 158 (805)
+.|.|
T Consensus 75 ~~v~V 79 (79)
T cd04973 75 FSVNV 79 (79)
T ss_pred EEEeC
Confidence 66654
No 118
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.41 E-value=2.2e-12 Score=108.86 Aligned_cols=91 Identities=23% Similarity=0.444 Sum_probs=69.1
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-----CceEEEeeCCEEEEEEc--cCCCCCCE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-----HRYRTFHDFGIVILDIL--YCYEENSG 567 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~--~v~~~d~G 567 (805)
+|.|...+.+.. +.+|+.++|.|.+. |.|.|.++|+|+|+.+... .+.....++....+.+. .+..+|+|
T Consensus 1 ~P~i~~~p~~~~-v~~G~~~~l~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G 77 (100)
T cd07693 1 PPRIVEHPSDLI-VSKGDPATLNCKAE--GRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEG 77 (100)
T ss_pred CCeEEecCceeE-EcCCCeEEEEeeCC--cCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCE
Confidence 577777766654 89999999999999 7899999999999998651 22223334444444443 33689999
Q ss_pred EEEEEEEcCCcc-eEEEEEEEE
Q psy2166 568 VYECRATNKYGS-DVTKASLKC 588 (805)
Q Consensus 568 ~Y~C~a~n~~g~-~~~~~~l~V 588 (805)
.|+|.|.|..|. .+..+.|.|
T Consensus 78 ~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 78 VYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEEccccceecceEEEEe
Confidence 999999999999 677777776
No 119
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.41 E-value=2e-12 Score=106.25 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=63.5
Q ss_pred CeeeecCCcccccC---CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCC-CCCCEEEEE
Q psy2166 692 PQFTSEFQHLSNLS---EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTK-IEDTGVYTC 767 (805)
Q Consensus 692 P~~~~~~~~~~~v~---~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C 767 (805)
|.|...|.++ .+. .|+.+.|.|.+. |+|.|.|+|+|+|+.+.......+....+ .|.|.++. .+|+|.|+|
T Consensus 2 P~f~~~p~~~-~~~~~~~~~~~~l~C~~~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C 76 (91)
T cd04967 2 PVFEEQPDDT-IFPEESDEGKVSLNCRAR--GSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQC 76 (91)
T ss_pred CeeEeCCCCE-EccCCCCCCEEEEEEeee--EcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEE
Confidence 6677777776 544 446799999998 99999999999999985433333333344 68898887 489999999
Q ss_pred EEEcCCccEEE
Q psy2166 768 RATNKWGQAEI 778 (805)
Q Consensus 768 ~a~N~~G~~~~ 778 (805)
.|+|.+|...+
T Consensus 77 ~a~N~~G~~~S 87 (91)
T cd04967 77 LASNIVGTVLS 87 (91)
T ss_pred EEEcCCCEEEe
Confidence 99999997655
No 120
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.41 E-value=1.5e-12 Score=103.20 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=62.7
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-EEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
|+.++|.|.+. |.|.|.++|+++|..+...... ..... ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 1 G~~~~l~C~~~--g~P~p~i~W~~~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAE--GIPQPTITWRLNGVPIEELPPDPRRRVD--GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEce--eeCCCEEEEEECCEECCCCCCcceEEcc--CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 78999999998 7899999999999998755432 12222 2369999999999999999999999999999998873
No 121
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.41 E-value=1.4e-12 Score=99.79 Aligned_cols=71 Identities=18% Similarity=0.098 Sum_probs=56.8
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
+.|.|.+. |.|+|.+.|+|+|.++..+.. ....+++ +|.|.+++.+|+|.|+|.|+|..+.......++..
T Consensus 1 ~~l~c~v~--g~P~P~v~W~kdg~~l~~~~~-~~~~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~ 71 (72)
T cd07702 1 YRLTPKVK--AFPAPEVIWLKDGLPAAEKCS-RYHVDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITLI 71 (72)
T ss_pred CeEEeeEE--EcCCCeEEEEECCEECCCCCc-EEEeCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEEEE
Confidence 47999999 999999999999999876532 2223333 79999999999999999999998766666655543
No 122
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.40 E-value=7e-13 Score=108.51 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=64.6
Q ss_pred ccCCCCeEEEEEEEeecC-----CCCeEEEEEECCEEccCC--CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 703 NLSEGEIAHFEASLIPVG-----DQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g-----~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
.+.+|+.+.|.|.+. | .|.+.|.|+|+|..+... ...++...++ .|.|.++..+|+|.|+|.|.|..|.
T Consensus 10 ~v~~G~~~~L~C~~~--g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 10 YVLEGEPVVIKCPLF--YSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEecCCCeEEECCCC--CcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCcc
Confidence 678999999999998 7 689999999999764321 2233333344 7999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2166 776 AEISVNLEC 784 (805)
Q Consensus 776 ~~~~~~l~V 784 (805)
.+.++.|+|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 999999876
No 123
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.40 E-value=8.8e-13 Score=101.73 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=59.3
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
|+|.|.+. |.|.|.++|+|+|..+..+.++.+..++ .|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~--g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQ--GDPEPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecce--EeCCCEEEEEECCEECCCCCCEEECCCC---EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 57999999 7789999999999999877777654332 59999999999999999999999999888776
No 124
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.39 E-value=4.2e-12 Score=103.35 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=71.0
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCe-EEEEEECCEEccCC--CCeEEEee----CcEEEEEEcCCCCCC-C
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEAS--HRIRTVHA----FGMVVLEILGTKIED-T 762 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~--~~~~~~~~----~~~~~L~i~~v~~~d-~ 762 (805)
||.| ...... .+.+|+++.|.|.+. +.|+| .|.|.+++..+..+ .++.+... +..+.|.|.++.+.| .
T Consensus 2 pP~i-~~~~s~-~~~~G~~~~L~C~~~--s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~ 77 (98)
T cd05898 2 PPII-SSEQVQ-YAVRGERGKVKCFIG--STPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQ 77 (98)
T ss_pred CCEE-ecCceE-EEeCCCcEEEEEEEc--cCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCC
Confidence 6766 444455 799999999999997 66665 67899888877654 57776554 357889999998766 8
Q ss_pred EEEEEEEEcCCccEEEEEEEE
Q psy2166 763 GVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 763 G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
|.|.|.|.|.+|+++..++|.
T Consensus 78 g~Y~C~a~N~~G~d~~~i~L~ 98 (98)
T cd05898 78 THYNCTAWNSFGSGTAIIQLE 98 (98)
T ss_pred cEEEEEEEeCCccceEEEEeC
Confidence 999999999999999988873
No 125
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.38 E-value=1.7e-12 Score=99.35 Aligned_cols=69 Identities=22% Similarity=0.365 Sum_probs=56.9
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
+.|.|.+. |.|.|.++|+|||++|..+.++. .+ ..|.|.++..+|+|.|+|.|.|..|......++.+.
T Consensus 1 ~~~~c~v~--G~P~P~v~W~k~g~~l~~~~~~~---~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYY--GYPPPEVKWYKNGQLIVLNHTFK---RG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEE--EeCCCEEEEEECCEECCCCCEEc---cC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 47899999 78999999999999997654321 22 359999999999999999999999988777666654
No 126
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.38 E-value=1.9e-12 Score=104.11 Aligned_cols=76 Identities=24% Similarity=0.342 Sum_probs=57.9
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCE-----EccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGK-----PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~-----~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
|+.++|.|.+. |.|.|.|+|+|++. .+.+..............|.|.++..+|+|.|+|.|.|.+|....++.
T Consensus 1 G~~v~l~C~~~--g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVT--GRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred CCcEEEEeecc--ccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence 78999999998 99999999999742 111111100011112247999999999999999999999999999999
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 876
No 127
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.38 E-value=6.4e-12 Score=103.36 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=62.4
Q ss_pred CceEecCCCcccc--cCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCC-CCCCEEEEEE
Q psy2166 496 PKFITQISDVTQL--KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY-EENSGVYECR 572 (805)
Q Consensus 496 P~~~~~~~~~~~v--~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~ 572 (805)
|.|+..+.+.... .+|+.++|.|.+. |.|.|+|+|+|||..|...........++ .|.|.++. .+|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~--G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~ 77 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEAR--GNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCL 77 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEee--ecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEE
Confidence 5666666654322 3589999999999 78999999999999996543333322233 48888874 6999999999
Q ss_pred EEcCCcceEE
Q psy2166 573 ATNKYGSDVT 582 (805)
Q Consensus 573 a~n~~g~~~~ 582 (805)
|.|..|....
T Consensus 78 A~N~~G~~~S 87 (94)
T cd05848 78 ATNSIGSILS 87 (94)
T ss_pred EEcCCCeEEe
Confidence 9999998753
No 128
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.38 E-value=4.1e-12 Score=102.88 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=62.0
Q ss_pred CeEEEEEEEeeCCCCCc--EEEEEECCEEccCCC---ceE-EEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 512 QSAHFEARLTPVTDPDL--VVEWFYNGKKLPHGH---RYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~--~v~W~~~g~~l~~~~---~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
++++|.|.+. |.|.| .+.|+|||+.|.... ++. .........|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 e~~~L~C~~~--g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHAS--HDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEEe--cCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 4689999999 55554 789999999986332 222 111223346999999999999999999999999999999
Q ss_pred EEEeeee
Q psy2166 586 LKCVSKT 592 (805)
Q Consensus 586 l~V~~~~ 592 (805)
|.|..+|
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9998754
No 129
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.37 E-value=3.4e-12 Score=99.45 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=57.4
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEEccCCCceEE--Ee---eCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 515 HFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--FH---DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 515 ~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
-|.|.+. |.|.|+|+|+|||++|..+.+... .. ......|.|.++..+|+|.|+|.|+|..|....++.+.
T Consensus 2 ~i~~~v~--G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVK--GNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEe--EeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 3789999 789999999999999987655422 11 12345799999999999999999999999988877653
No 130
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.37 E-value=7.2e-12 Score=102.03 Aligned_cols=80 Identities=25% Similarity=0.339 Sum_probs=65.0
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 152 (805)
+.+..+.+|+.++|.|.+. |. .|.|.|+||+..+..+ ++.+..+++ +|+|.+++.+|+|.|+|.|.|..|...+
T Consensus 10 ~~~~~v~~g~~v~l~C~a~--g~-~p~i~W~kng~~l~~~-~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAE--GQ-ATYIWWVNNGSLLVPP-RLQLSNDNR--TLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred cCccccccCCcEEEEEEeC--CC-CCEEEEEECCEECCCC-CEEEeCCCC--EEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 4467899999999999999 56 8899999999988653 555554433 7999999999999999999999987655
Q ss_pred -EEEEEE
Q psy2166 153 -STTIYC 158 (805)
Q Consensus 153 -~~~l~V 158 (805)
...|.|
T Consensus 84 ~~~~L~V 90 (91)
T cd05740 84 DPYILNV 90 (91)
T ss_pred eeEEEEe
Confidence 455555
No 131
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.37 E-value=5.6e-12 Score=99.90 Aligned_cols=71 Identities=24% Similarity=0.265 Sum_probs=58.0
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEe-------eCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 515 HFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH-------DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 515 ~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
.|.|.+. |.|.|.|+|+|||++|..+....... ......|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 2 ~i~~~v~--G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVR--GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeE--eeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 4789999 78999999999999998765443321 12355799999999999999999999999998877664
No 132
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.37 E-value=2.1e-12 Score=101.94 Aligned_cols=65 Identities=23% Similarity=0.315 Sum_probs=51.3
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCC--CeEEEeeCcEEEEEEcCCCC----CCCEEEEEEEEcCCccEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASH--RIRTVHAFGMVVLEILGTKI----EDTGVYTCRATNKWGQAEI 778 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~N~~G~~~~ 778 (805)
+.|.|.+. |+|.|.|+|+|||.++.... ++.+....+ .|.|.++.. +|+|.|+|+|.|.+|...+
T Consensus 1 i~l~C~~~--G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAK--GNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG--TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCc--ccCCCeEEEEECCeECCCCCCCCEEEeCCCC--EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 47999999 99999999999999986543 444434345 677777753 7999999999999997554
No 133
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.37 E-value=5e-12 Score=96.92 Aligned_cols=68 Identities=22% Similarity=0.362 Sum_probs=56.5
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
|++++|.|.+. |.|.|.|+|+|+|+++....++.. +...|.|.++ .|+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~--G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAV--GAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEee--ecCCCEEEEEECCEECCCccceec----CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 78899999999 789999999999999876554332 2236889886 48999999999999998888776
No 134
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.36 E-value=2.3e-12 Score=99.94 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=58.7
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
+.|.|.+. |.|.|.+.|+|++..+..+. ...... ...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 1 ~~L~C~~~--G~P~P~v~W~k~~~~~~~~~-~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAE--GLPTPEVHWDRIDGPLSPNR-TKKLNN--NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEee--EecCCeEEEEECCcCCCCCc-eeEEcC--CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 47999999 78999999999998876543 222222 2369999999999999999999999999999888874
No 135
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.36 E-value=3.6e-12 Score=98.63 Aligned_cols=70 Identities=26% Similarity=0.312 Sum_probs=59.5
Q ss_pred EEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 84 LHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 84 v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
+.|.|.+. |.|.|.+.|+|||..+..+.++... ..+|.|.+++.+|+|.|+|.|.|..|......++.|.
T Consensus 1 ~~l~c~v~--g~P~p~v~W~k~g~~l~~~~~~~~~----~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVK--AYPPPEIQWYKNGKLISEKNRTKKS----GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEE--EeCCCEEEEEECCEECCCCCEEEcC----CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 47999999 7899999999999999877555432 2379999999999999999999999988888777764
No 136
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.36 E-value=5.2e-12 Score=99.73 Aligned_cols=71 Identities=23% Similarity=0.462 Sum_probs=56.3
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCC-ceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGH-RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
++|.|.+. |.|.|.++|+|+|.++..+. ++.+...+ ..|.|.++..+|+|.|+|.|.|..|....+..+++
T Consensus 1 v~L~C~~~--g~P~p~v~W~k~g~~l~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHID--GHPRPTYQWFRDGTPLSDGQGNYSVSSKE--RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEee--ecCCCcEEEEECCEECCCCCccEEEeCCC--CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 58999999 77899999999999996653 33333322 36999999999999999999999999865444444
No 137
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.35 E-value=2.2e-11 Score=109.01 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=85.9
Q ss_pred EEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCC
Q psy2166 628 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 707 (805)
Q Consensus 628 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 707 (805)
.|.|.+++.+|+|.|.|.+.+..|.......|.|.. ||.+...+... ...+|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~---------------------------~P~v~~~~~~~-~~~~~ 53 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE---------------------------PPRVRLSLEKL-VSMIE 53 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec---------------------------CCceEEeCCCc-eeecC
Confidence 489999999999999999999999998999999984 56666555554 45579
Q ss_pred CeEEEEEEEeecCC-CC-eEEEEEECCEEccC-----CCC----eEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 708 EIAHFEASLIPVGD-QT-MTVEFLYNGKPIEA-----SHR----IRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 708 ~~~~l~C~~~~~g~-p~-~~v~W~~~g~~l~~-----~~~----~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
+.++|.|.+. |. |. +.|+|+++|..... .+. .....++. .+.|.|..-..++.+.|+|.|.+..
T Consensus 54 ~~~~L~C~a~--g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 54 EPQTLICHIA--GYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CcEEEEEEEC--CCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 9999999998 64 54 58999999864221 111 11112222 2468887777777889999998754
No 138
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.35 E-value=2.1e-12 Score=101.33 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=59.7
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCC-eEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
|.+...|... .+.+|++++|.|.+. |.|. +.+.|+|||+.+... ++ .|.|.++ .+|+|.|+|.|.
T Consensus 1 ~vv~~~P~~~-~v~~G~~V~L~C~~~--~~p~~~~~~W~kng~~l~~~--------~~--~l~i~~~-~~dsG~Y~C~a~ 66 (78)
T cd05752 1 AVVSLDPPWT-TIFQGEKVTLTCNGF--NSPEQNSTQWYHNGKLLETT--------TN--SYRIRAA-NNDSGEYRCQTQ 66 (78)
T ss_pred CeEEeCCCCe-EeeCCCCEEEEEeCC--CCCCCccEEEEECCEEeecc--------CC--eEEEeec-ccCCEEeEEECC
Confidence 4556666667 899999999999998 8776 479999999987321 22 6899999 999999999999
Q ss_pred cCCccEEEEEEEEE
Q psy2166 771 NKWGQAEISVNLEC 784 (805)
Q Consensus 771 N~~G~~~~~~~l~V 784 (805)
|. ..+..++|+|
T Consensus 67 ~~--~~S~~v~l~V 78 (78)
T cd05752 67 GS--SLSDPVHLEV 78 (78)
T ss_pred CC--cCCCCEEEeC
Confidence 85 4444444443
No 139
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.34 E-value=1.9e-11 Score=100.59 Aligned_cols=84 Identities=29% Similarity=0.470 Sum_probs=61.9
Q ss_pred CceEecCCCcccccC---CCeEEEEEEEeeCCCCCcEEEEEECCEEccCC--CceEEEeeCCEEEEEEccCC-CCCCEEE
Q psy2166 496 PKFITQISDVTQLKE---GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCY-EENSGVY 569 (805)
Q Consensus 496 P~~~~~~~~~~~v~~---G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~-~~d~G~Y 569 (805)
|.|...+.+.. +.+ |++++|.|.+. |.|.|.|+|++||..+... .++.+. ++ .|.|.++. .+|+|.|
T Consensus 2 P~f~~~P~~~~-~~~~~~g~~v~l~C~a~--g~P~p~i~W~~~g~~l~~~~~~~~~~~--~g--~L~I~~~~~~~D~G~Y 74 (94)
T cd05850 2 PVFEEQPSSLL-FPEGSPEEKVTLGCRAR--ASPPATYRWKMNGTEIKFAPESRYTLV--AG--NLVINNPQKARDAGSY 74 (94)
T ss_pred CeeEECCCCEE-ecCCCCCCeEEEEeEce--eCCCCEEEEEECCEECccCCCceEEEE--CC--eEEEccCCccCcCEEE
Confidence 55666555544 434 57899999999 7899999999999999643 333332 23 48887755 5999999
Q ss_pred EEEEEcCCcceEE-EEEE
Q psy2166 570 ECRATNKYGSDVT-KASL 586 (805)
Q Consensus 570 ~C~a~n~~g~~~~-~~~l 586 (805)
+|.|+|..|.... .+.|
T Consensus 75 ~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 75 QCLAINRCGTVVSREANL 92 (94)
T ss_pred EEEEEcCcCcEEEEEEEE
Confidence 9999999998754 4444
No 140
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.34 E-value=1.2e-11 Score=103.00 Aligned_cols=88 Identities=25% Similarity=0.335 Sum_probs=69.2
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCc-EEEEEECCEEccCC--CceEEEee----CCEEEEEEccCCCC-CC
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDL-VVEWFYNGKKLPHG--HRYRTFHD----FGIVILDILYCYEE-NS 566 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~-~v~W~~~g~~l~~~--~~~~~~~~----~~~~~L~i~~v~~~-d~ 566 (805)
||.+ ...... .+.+|+.++|.|.+. |.|.| .|.|+++|+.+... .++.+... +..+.|.|.++..+ |.
T Consensus 2 pp~i-~~~~~~-~~~~G~~v~L~C~~~--g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~ 77 (98)
T cd05758 2 PPII-TSEATQ-YAILGDKGRVECFIF--STPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQ 77 (98)
T ss_pred CCeE-cCCCcE-EEeCCCcEEEEEEEc--ccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccc
Confidence 4444 333443 378999999999999 77888 69999999998653 46766543 23467999999994 58
Q ss_pred EEEEEEEEcCCcceEEEEEE
Q psy2166 567 GVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 567 G~Y~C~a~n~~g~~~~~~~l 586 (805)
|.|+|.|.|..|.....+.|
T Consensus 78 G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 78 TSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred eeEEEEEEcCCCcccEEEEe
Confidence 99999999999999888776
No 141
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.34 E-value=7.7e-12 Score=98.35 Aligned_cols=73 Identities=26% Similarity=0.518 Sum_probs=61.0
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEE-CCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
|+.+.|.|.+. |.|.|.+.|++ ++..+....+.....++ .|.|..+..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~--g~P~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKAR--GDPEPAIHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEcc--CcCCCEEEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 78999999998 78999999997 67777666555444332 4899999999999999999999999988888765
No 142
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.33 E-value=7.2e-12 Score=101.15 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=60.7
Q ss_pred CCeEEEEEEEeecCC--CCeEEEEEECCEEccCCCC----eE-EEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEE
Q psy2166 707 GEIAHFEASLIPVGD--QTMTVEFLYNGKPIEASHR----IR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779 (805)
Q Consensus 707 G~~~~l~C~~~~~g~--p~~~v~W~~~g~~l~~~~~----~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 779 (805)
|+.+.|.|.+. |. |.|.|+|+++++.+..... .. .........|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 1 Ge~~~L~C~~~--g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTVL--TELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEEE--eCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence 78999999999 77 8999999998875543211 11 1111234689999999999999999999999999999
Q ss_pred EEEEE
Q psy2166 780 VNLEC 784 (805)
Q Consensus 780 ~~l~V 784 (805)
+.|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 99877
No 143
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.33 E-value=6.4e-12 Score=98.40 Aligned_cols=71 Identities=28% Similarity=0.437 Sum_probs=58.5
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEcc--CCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce-EEEEEEEEe
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLP--HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD-VTKASLKCV 589 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~ 589 (805)
++|.|.+. |.|.|.|+|+|++.++. .+.++....+ + .|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 1 a~l~C~~~--G~P~p~v~W~k~~~~~~~~~~~~~~~~~~-g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAAS--GNPDPEITWFKDFLPVDTTSNGRIKQLRS-G--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEe--EecCCEEEEEECCEECccCCCCCEEEcCC-c--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 47999999 78999999999999987 4455554332 2 49999999999999999999999985 677888763
No 144
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.33 E-value=7.3e-12 Score=98.51 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=50.2
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCC--CCeEEEeeCcEEEEEEcCCCC----CCCEEEEEEEEcCCccEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKI----EDTGVYTCRATNKWGQAEIS 779 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~N~~G~~~~~ 779 (805)
+.|.|.+. |+|.|.|+|+|||.++... .++.+...++ +|.|..+.. .|+|.|+|.|.|.+|...+.
T Consensus 1 ~~l~C~a~--G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAK--GKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCc--ccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 47999999 9999999999999987543 3444444445 566666653 37899999999999976653
No 145
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.32 E-value=7.9e-12 Score=102.39 Aligned_cols=77 Identities=25% Similarity=0.373 Sum_probs=63.4
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEc--------cCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKL--------PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 582 (805)
|+.++|.|.+. |.|.|.+.|+|+|..+ ....++.+..++ .|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 G~~v~L~C~~~--g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEAT--GNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG---DLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEECC--ccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC---eEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 78999999998 7899999999998753 123455543322 5999999999999999999999999999
Q ss_pred EEEEEEeeee
Q psy2166 583 KASLKCVSKT 592 (805)
Q Consensus 583 ~~~l~V~~~~ 592 (805)
.+.|.|....
T Consensus 76 ~~~l~V~~~~ 85 (90)
T cd05726 76 KAYLEVTDVI 85 (90)
T ss_pred EEEEEEeecc
Confidence 9999998643
No 146
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.32 E-value=7.2e-12 Score=98.56 Aligned_cols=66 Identities=26% Similarity=0.285 Sum_probs=51.6
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEcc--CCCCeEEEeeCcEEEEEEcCCC----CCCCEEEEEEEEcCCccEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIE--ASHRIRTVHAFGMVVLEILGTK----IEDTGVYTCRATNKWGQAEIS 779 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~----~~d~G~Y~C~a~N~~G~~~~~ 779 (805)
+.|.|.+. |+|.|.|+|+|+|..+. .+.++.+..+.+ +|.|.++. .+|+|.|+|.|.|.+|...+.
T Consensus 1 ~~l~C~~~--G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAK--GNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEecc--ccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 47999999 99999999999999764 345565544444 68887764 357999999999999966554
No 147
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.32 E-value=1.7e-11 Score=100.31 Aligned_cols=85 Identities=26% Similarity=0.340 Sum_probs=63.2
Q ss_pred CCceEecCCCcccccC---CCeEEEEEEEeeCCCCCcEEEEEECCEEccC-CCceEEEeeCCEEEEEEccCC-CCCCEEE
Q psy2166 495 APKFITQISDVTQLKE---GQSAHFEARLTPVTDPDLVVEWFYNGKKLPH-GHRYRTFHDFGIVILDILYCY-EENSGVY 569 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~---G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y 569 (805)
+|.|...+.+.. +.+ |..+.|.|.+. |.|.|.++|+|+|..+.. ..++.+ . ++ .|.|.++. .+|+|.|
T Consensus 1 ~P~f~~~P~~~~-~~~~~~~~~v~l~C~a~--G~P~P~i~W~k~~~~i~~~~~~~~~-~-~g--~L~I~~~~~~~D~G~Y 73 (93)
T cd05849 1 GPVFEEQPIDTI-YPEESTEGKVSVNCRAR--ANPFPIYKWRKNNLDIDLTNDRYSM-V-GG--NLVINNPDKYKDAGRY 73 (93)
T ss_pred CCEEEECCCCEE-ecCCccCCeEEEeCcCc--cCCCCEEEEEECCEEccCCCCeEEE-E-CC--EEEECcCCcCCCCEEE
Confidence 366666665543 433 44899999999 789999999999999853 344433 2 23 58998875 6899999
Q ss_pred EEEEEcCCcceEE-EEEE
Q psy2166 570 ECRATNKYGSDVT-KASL 586 (805)
Q Consensus 570 ~C~a~n~~g~~~~-~~~l 586 (805)
+|.|+|..|.... .+.|
T Consensus 74 ~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 74 VCIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEEeCcceEEEccEEE
Confidence 9999999998744 4444
No 148
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.32 E-value=8.4e-12 Score=98.30 Aligned_cols=71 Identities=27% Similarity=0.390 Sum_probs=57.7
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEcc---CCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLP---HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~---~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
++|.|.+. |.|.|+++|+|+|.... ...++.+...++ .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~--G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAAT--GHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecc--cccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 47999998 88999999999986432 233444433333 6999999999999999999999999999999987
No 149
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.32 E-value=8.5e-12 Score=98.55 Aligned_cols=72 Identities=21% Similarity=0.391 Sum_probs=57.2
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCC----CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEAS----HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
+.|.|.+. .+.|.+.++|+|+|+.+... .++.+........|.|.++..+|+|.|+|.|.|.+|.+..++.+
T Consensus 1 ~~L~C~a~-~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~~ 76 (76)
T cd05895 1 LVLRCETV-SEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTANV 76 (76)
T ss_pred CEEEEecc-cCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEeC
Confidence 47999987 24688999999999988643 22333343455689999999999999999999999998887753
No 150
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.32 E-value=1.1e-11 Score=97.88 Aligned_cols=74 Identities=23% Similarity=0.217 Sum_probs=61.3
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
+.|.|.+. |.|.|.+.|+|+|+.+..+.+......+....|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~--g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAE--GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEee--ecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 47999999 779999999999999876543333222333469999999999999999999999999999999886
No 151
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.32 E-value=7.7e-12 Score=96.64 Aligned_cols=69 Identities=30% Similarity=0.467 Sum_probs=58.1
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
++|.|.+. |.|.|.+.|+|++..+..+ ++.+..+ + .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~--g~P~p~v~W~k~~~~~~~~-~~~~~~~-~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVG--GDPVPTVLWRKEDGELPKG-RAEILDD-K--SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECc--cCCCCEEEEEECCccCCCC-cEEEeeC-C--EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999998 7899999999998877544 4544422 2 5999999999999999999999999999888875
No 152
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.31 E-value=1.3e-11 Score=100.95 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=60.1
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEEC----CEEccCCCc--eEEEee-------CCEEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYN----GKKLPHGHR--YRTFHD-------FGIVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~----g~~l~~~~~--~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
|+.++|.|.+. |.|.|.|+|+|+ |..+..+.. ..+... .....|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~L~C~~~--g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKVY--SDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEEe--cCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 78999999999 789999999984 555543322 111111 123579999999999999999999999
Q ss_pred cceEEEEEEEE
Q psy2166 578 GSDVTKASLKC 588 (805)
Q Consensus 578 g~~~~~~~l~V 588 (805)
|....++.|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99999999987
No 153
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.30 E-value=2.1e-11 Score=99.37 Aligned_cols=79 Identities=25% Similarity=0.466 Sum_probs=64.1
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC-CCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEE
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-GSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 152 (805)
.+..+.+|++++|.|.+.. +.|.+.|.|+|+|..+.. ..++.+..++ +|.|.+++.+|+|.|+|.|.|..|...+
T Consensus 4 ~~~~~~~G~~v~l~C~~~~-g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPR-GHPEPTVSWRKDGQPLNLDNERVRIVDDG---NLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred ccEEEeCCCCEEEEEECCC-CCCCCEEEEEECCEECCCCCCCEEEccCC---EEEEeECCcccCEEEEEEEEeccCceee
Confidence 4678899999999999831 688999999999999886 4466555433 7999999999999999999999887654
Q ss_pred -EEEE
Q psy2166 153 -STTI 156 (805)
Q Consensus 153 -~~~l 156 (805)
.+.|
T Consensus 80 ~~~~l 84 (86)
T cd05724 80 AAARL 84 (86)
T ss_pred eeEEE
Confidence 3434
No 154
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.30 E-value=9.1e-12 Score=101.78 Aligned_cols=77 Identities=21% Similarity=0.363 Sum_probs=59.3
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECC----EEccCC-Cce-EEEe-------eCCEEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNG----KKLPHG-HRY-RTFH-------DFGIVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g----~~l~~~-~~~-~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
|+.++|.|.+. |.|.|.|+|+|++ ..+... ... .... .+....|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~l~C~v~--g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 1 GSDVEFHCKVY--SDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred CCcEEEEEEEe--CCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence 68899999999 8899999999964 333221 111 1111 1233479999999999999999999999
Q ss_pred cceEEEEEEEEe
Q psy2166 578 GSDVTKASLKCV 589 (805)
Q Consensus 578 g~~~~~~~l~V~ 589 (805)
|....++.|.|.
T Consensus 79 G~~~~sa~L~V~ 90 (90)
T cd04974 79 GPSHHSAWLTVL 90 (90)
T ss_pred CcccCCEEEEeC
Confidence 999999999873
No 155
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.30 E-value=3.2e-11 Score=98.88 Aligned_cols=79 Identities=28% Similarity=0.500 Sum_probs=61.9
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEE-CCEEccCCCceEEEe-eCCEEEEEEccCCCCCCEEEEEEEEcCCcc-eEEE
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGHRYRTFH-DFGIVILDILYCYEENSGVYECRATNKYGS-DVTK 583 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~ 583 (805)
.+..|+++.|.|.+. |.|. .++|++ +|..+....++.+.. ....+.|.|.+++.+|+|.|+|.|.|..|. ...+
T Consensus 11 ~v~~G~~~~l~C~~~--G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s 87 (92)
T cd04977 11 EISVGESKFFLCQVI--GEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT 87 (92)
T ss_pred EECCCCeEEEEEEeE--eeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence 389999999999999 5564 999997 777776655555433 345678999999999999999999999754 4666
Q ss_pred EEEEE
Q psy2166 584 ASLKC 588 (805)
Q Consensus 584 ~~l~V 588 (805)
+.|.|
T Consensus 88 v~l~~ 92 (92)
T cd04977 88 VNLKI 92 (92)
T ss_pred EEEEC
Confidence 66643
No 156
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.30 E-value=2.6e-11 Score=98.65 Aligned_cols=80 Identities=24% Similarity=0.412 Sum_probs=67.5
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEE-eeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV-HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+..|+.+.|.|.+. |.|.+.+.|+|++..+......... .......|.|.++..+|+|.|+|.|.|..|..+.+++
T Consensus 5 ~~~~G~~~~l~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 5 AVPAGSTVRLKCPAS--GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred EecCCCcEEEEEEcC--CCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 577899999999998 8999999999999988766544322 2233457999999999999999999999999999888
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 875
No 157
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.29 E-value=1.5e-11 Score=97.13 Aligned_cols=71 Identities=27% Similarity=0.384 Sum_probs=58.1
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceE---EEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR---TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
+.|.|.+.+ +.|.|.++|+|+|+++..+.+.. +........|.|.+++.+|+|.|+|.|.|..|....+++
T Consensus 1 ~~l~C~~~g-~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATS-EYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccC-CCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999993 28999999999999997654432 333445678999999999999999999999999887764
No 158
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.29 E-value=1.4e-11 Score=99.41 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=63.2
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
...|++++|.|.+. |.|.|.++|+|+|..+....... .......|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 6 ~~~G~~v~L~C~~~--g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 6 RPVGSSVRLKCVAS--GNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred ccCCCeEEEEEEee--EeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 67899999999999 67888999999999886543322 122345799999999999999999999999988877775
Q ss_pred E
Q psy2166 588 C 588 (805)
Q Consensus 588 V 588 (805)
|
T Consensus 82 v 82 (82)
T cd05856 82 V 82 (82)
T ss_pred C
Confidence 4
No 159
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.28 E-value=2.7e-11 Score=100.49 Aligned_cols=83 Identities=23% Similarity=0.321 Sum_probs=62.0
Q ss_pred ecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEeeCCEEEEEEccC-----CCCCCEEEEEE
Q psy2166 500 TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFHDFGIVILDILYC-----YEENSGVYECR 572 (805)
Q Consensus 500 ~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v-----~~~d~G~Y~C~ 572 (805)
..+.+.. +.+|+++.|.|.+. |.|.|.|+|+|||..+..... +.+..++. |.|.++ ..+|+|.|+|.
T Consensus 4 ~~P~~~~-~~~g~~v~l~C~v~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~---l~i~~v~~~~~~~~D~G~Y~C~ 77 (95)
T cd05722 4 SEPSDIV-AVRGGPVVLNCSAE--GEPPPKIEWKKDGVLLNLVSDERRQQLPNGS---LLITSVVHSKHNKPDEGFYQCV 77 (95)
T ss_pred ECCCCeE-EcCCCCEEEeeecc--cCCCCEEEEEECCeECccccCcceEEccCCe---EEEeeeeccCCCCCcCEEEEEE
Confidence 3344443 77899999999999 778999999999999975433 44333333 455544 57899999999
Q ss_pred EEcC-Ccce-EEEEEEEE
Q psy2166 573 ATNK-YGSD-VTKASLKC 588 (805)
Q Consensus 573 a~n~-~g~~-~~~~~l~V 588 (805)
|.|. .|.. +..+.|+|
T Consensus 78 a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 78 AQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EECCccCcEEEeeeEEeC
Confidence 9999 9987 55666654
No 160
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.28 E-value=1.1e-11 Score=98.75 Aligned_cols=70 Identities=24% Similarity=0.273 Sum_probs=54.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEcc--------CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccE-EEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIE--------ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISV 780 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~--------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~ 780 (805)
++|.|.+. |+|.|.|.|+|++.... ...++.... .+ .|.|.++..+|+|.|+|.|.|.+|.+ +.++
T Consensus 1 v~l~C~~~--G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSAE--GYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS-NG--SLLIKHVLEEDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeCe--EeCCCEEEEEECCCccccccccccccCCCEEEec-CC--eEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence 57999999 99999999999643211 234444322 23 69999999999999999999999966 7777
Q ss_pred EEEE
Q psy2166 781 NLEC 784 (805)
Q Consensus 781 ~l~V 784 (805)
.|+|
T Consensus 76 ~l~~ 79 (79)
T cd05734 76 VLTV 79 (79)
T ss_pred EEeC
Confidence 7765
No 161
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.27 E-value=2.2e-11 Score=96.20 Aligned_cols=70 Identities=13% Similarity=0.291 Sum_probs=55.4
Q ss_pred cccCCCeEEEEEEEeeCCCCCc-EEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEE-EE
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDL-VVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT-KA 584 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~ 584 (805)
.+.+|+++.|.|.+. |.|.| +|+|+|||.++... . ....+.|.|..+ .|+|.|+|.|+|..|.... .+
T Consensus 9 ~v~~G~~v~l~C~a~--G~P~P~~I~W~k~g~~l~~~--~----~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a 78 (81)
T cd05749 9 SVTANTPFNLTCQAV--GPPEPVEILWWQGGSPLGDP--P----APSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTG 78 (81)
T ss_pred EEcCCCCEEEEEEee--eecCCeEEEEEECCEECCCC--C----CCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeE
Confidence 489999999999999 88999 79999999998641 1 112236899876 5889999999999997654 44
Q ss_pred EE
Q psy2166 585 SL 586 (805)
Q Consensus 585 ~l 586 (805)
.|
T Consensus 79 ~~ 80 (81)
T cd05749 79 TV 80 (81)
T ss_pred Ee
Confidence 44
No 162
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.27 E-value=2.2e-11 Score=93.19 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=54.4
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCC-CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHG-HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
++|.|.+. |.|.|+++|+|||.++..+ .++. .++. .|.|.+++.+|+|.|+|.|+|..........++
T Consensus 1 ~~l~c~v~--g~P~P~v~W~kdg~~l~~~~~~~~--~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVK--AFPAPEVIWLKDGLPAAEKCSRYH--VDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEE--EcCCCeEEEEECCEECCCCCcEEE--eCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 47999999 7899999999999998765 3332 2232 599999999999999999999877766655544
No 163
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.27 E-value=2.6e-11 Score=97.31 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=56.3
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCC----CeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCc--cEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH----RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG--QAEISV 780 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G--~~~~~~ 780 (805)
|++++|.|.+. |.|.+.+.|++.|+...... +..+......++|.|.+++.+|+|.|+|.|+|..+ ....++
T Consensus 1 Ge~~~l~C~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 1 GETITVNCIVQ--GNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred CCcEEEEEEEE--CCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 78999999999 89999999999876432111 11111122356899999999999999999999987 455555
Q ss_pred EEEE
Q psy2166 781 NLEC 784 (805)
Q Consensus 781 ~l~V 784 (805)
.|+|
T Consensus 79 ~i~V 82 (84)
T cd05861 79 NITV 82 (84)
T ss_pred EEEE
Confidence 5554
No 164
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.27 E-value=1.6e-11 Score=95.74 Aligned_cols=70 Identities=27% Similarity=0.323 Sum_probs=57.7
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
++|.|.+. |.|.|.++|+|++..+..+ +.... .....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~--g~P~p~v~W~k~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAE--GLPTPEISWIKIGGELPAD-RTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEee--EecCCeEEEEECCeECCCC-ceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47999999 7788999999999887654 22222 22346999999999999999999999999999888877
No 165
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.26 E-value=3.6e-11 Score=98.81 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=64.1
Q ss_pred CcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--------CEEccCCCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--------GKPIEASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--------g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+. .+.+|++++|.|.+. +.|.+.|.|++. +.....+.|+.+... .+..+|.|.++..+|+|.|+|.|
T Consensus 5 ~~v-~v~eG~~v~L~C~~~--~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~ 81 (95)
T cd07701 5 QNV-TVVEGGTANLTCRVD--QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSL 81 (95)
T ss_pred ceE-EEecCCcEEEEEEEe--cCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEe
Confidence 445 899999999999998 999999999863 322334557665333 45578999999999999999999
Q ss_pred EcCCccEEEEEEEEE
Q psy2166 770 TNKWGQAEISVNLEC 784 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V 784 (805)
.+..+ ...+++|+|
T Consensus 82 ~t~~~-~~~~~~l~v 95 (95)
T cd07701 82 FTMPV-KTSKAYLTV 95 (95)
T ss_pred EeecC-ccEEEEEEC
Confidence 99544 477888876
No 166
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.26 E-value=4.1e-11 Score=95.25 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=56.1
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
|.+. .+.+|+++.|.|.+. .|.+.|.|+|||+++..+ .++.+ .+ + .|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~-~v~~G~~v~L~C~~~---~~~~~i~W~~ng~~i~~~~~r~~~-~~-~--~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQR-TFKLGNNAELKCSPK---SNLARVVWKFDGKVLTPESAKYLL-YR-D--GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceE-EEECCCCEEEEEECC---CCCCeEEEEECCEECCCCCceEEE-EC-C--cEEEeCCCHHHCEEEEEEEEecc
Confidence 4455 899999999999974 477899999999999876 44443 33 3 49999999999999999999864
No 167
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.25 E-value=3.4e-11 Score=97.51 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=62.5
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 777 (805)
|... .+.+|+.++|.|.+. .+.|.+.|.|++++..+.... ...++ .|.|.+++.+|+|.|.|.|.|..|...
T Consensus 8 p~~~-~v~~G~~v~L~C~~~-~~~~~~~i~W~~~~~~~~~~~----~~~~~--~L~I~~v~~~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 8 PRSQ-EVRPGADVSFICRAK-SKSPAYTLVWTRVGGGLPSRA----MDFNG--ILTIRNVQLSDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred CCce-EEcCCCCEEEEEEcC-CCCCCcEEEEEECCCcCCCcc----cccCC--EEEECCCCHHHCEEEEEEEeccCCeEe
Confidence 3344 789999999999997 136889999999997654321 12233 799999999999999999999999999
Q ss_pred EEEEE
Q psy2166 778 ISVNL 782 (805)
Q Consensus 778 ~~~~l 782 (805)
.+++|
T Consensus 80 ~~~~l 84 (85)
T cd05754 80 ATATL 84 (85)
T ss_pred EEEEE
Confidence 98876
No 168
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.25 E-value=4.3e-11 Score=94.51 Aligned_cols=71 Identities=23% Similarity=0.384 Sum_probs=57.0
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCC----CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHG----HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
+.|+|.+.+ +.|.+.++|+|+|+.+... .++.+........|.|.+++.+|+|.|+|.|.|..|..+.+++
T Consensus 1 ~~L~C~a~~-~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVS-EYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEeccc-CCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999874 4788899999999998632 2234334445678999999999999999999999999887765
No 169
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.23 E-value=2.1e-11 Score=99.77 Aligned_cols=77 Identities=26% Similarity=0.365 Sum_probs=62.3
Q ss_pred ccCCCeEEEEEEEeeCC-----CCCcEEEEEECCEEccCC--CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 508 LKEGQSAHFEARLTPVT-----DPDLVVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g-----~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
+.+|+.+.|.|.+. + .|.+.|+|+|+|..+... ...++...++ .|.|.++..+|+|.|+|.++|..|..
T Consensus 11 v~~G~~~~L~C~~~--g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 11 VLEGEPVVIKCPLF--YSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred EecCCCeEEECCCC--CcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCccE
Confidence 78999999999998 5 688899999999765321 1222333333 59999999999999999999999999
Q ss_pred EEEEEEEE
Q psy2166 581 VTKASLKC 588 (805)
Q Consensus 581 ~~~~~l~V 588 (805)
+..++|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 99988875
No 170
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.23 E-value=4e-11 Score=96.35 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=56.8
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCE---Ec--cCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGK---KL--PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~---~l--~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
|+.++|.|.+. |.|.|.++|+|++. .+ ................|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 1 G~~v~l~C~~~--g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVT--GRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred CCcEEEEeecc--ccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence 78999999998 78999999999732 11 1111000011112346999999999999999999999999999998
Q ss_pred EEE
Q psy2166 586 LKC 588 (805)
Q Consensus 586 l~V 588 (805)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 875
No 171
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.22 E-value=5.6e-11 Score=95.93 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=60.6
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc-----eEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR-----YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
|+.++|.|.+.+...|.+.|+|+++++.+..... .........+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999943238899999998876643211 11111224567999999999999999999999999999998
Q ss_pred EEE
Q psy2166 586 LKC 588 (805)
Q Consensus 586 l~V 588 (805)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
No 172
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.21 E-value=5.4e-11 Score=96.61 Aligned_cols=80 Identities=19% Similarity=0.154 Sum_probs=64.3
Q ss_pred ccCCCCeEEEEEEEeec---CCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEE
Q psy2166 703 NLSEGEIAHFEASLIPV---GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~---g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 779 (805)
.+.+|+.+.|.|..... .+|.|.+.|+|||+++....+.. . .++ .|.|.++..+|+|.|+|.|.|.+|...-.
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~-~~~--~L~I~~v~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V-KGS--KLLIQNVTEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e-cCC--EEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence 67889999999987510 23678999999999998765443 2 333 79999999999999999999999988877
Q ss_pred EEEEEEE
Q psy2166 780 VNLECVV 786 (805)
Q Consensus 780 ~~l~V~~ 786 (805)
+++++.+
T Consensus 82 ~t~t~~l 88 (92)
T cd05757 82 VTRTISL 88 (92)
T ss_pred EEEEEEE
Confidence 7766654
No 173
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.20 E-value=1.6e-05 Score=98.12 Aligned_cols=484 Identities=13% Similarity=0.149 Sum_probs=260.8
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEECCEecCC-CCceEEEecCcEEEEEEcccccCCCeEEEEEE--EeCCeeEEEE
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-GSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA--WNLAGETFTS 153 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--~n~~g~~~~~ 153 (805)
.+..+..+.|.-... ......+.|.+.+.-... .... ...+ -...|.|.-.. .|..|....+
T Consensus 1522 ~vpl~~sV~Fta~~s--~Gs~v~ysWdFGDg~ts~~~npt--------~~yT-----Y~spGtYtVtLTvtN~~Gs~~~T 1586 (2740)
T TIGR00864 1522 NVPLNGSVHFEAHLD--AGDDVRFSWILCDHCTPIFGGNT--------IFYT-----FRSVGTFNIIVTAENDVGAAQAS 1586 (2740)
T ss_pred cccccceEEEEEEcc--CCCceeEEEEeCCCCccccCCCc--------eEEe-----ecCCceEEEEEEEecCCCcccee
Confidence 344566788875544 234568999886432111 1110 0111 23468887655 5778888777
Q ss_pred EEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCC
Q psy2166 154 TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ 233 (805)
Q Consensus 154 ~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p 233 (805)
..+.|+...........+.. .+... ...+.. ..+..+..+.|+-.+. .| .
T Consensus 1587 ~~i~V~~~I~GlqI~~~~~~-------------------------gg~~~--~~~~~~-~~~~t~~~v~l~~~~~-~G-T 1636 (2740)
T TIGR00864 1587 IFLFVLQEIEGLQILGETAE-------------------------GGGGG--VQELDG-CYFETNHTVQFHAGFK-DG-T 1636 (2740)
T ss_pred EEEEEeecccceEEEeeccc-------------------------ccCCc--cccccc-ceeccCCEEEeeeccC-CC-C
Confidence 88888754322111100000 00000 000000 1255667788877663 23 4
Q ss_pred CeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEE--EEcCCeeEEEEEEEEEeccCCCCCCeEEecCC
Q psy2166 234 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR--ATNKWGQAEISVNLECVDKSKGQPPKFTSHIK 311 (805)
Q Consensus 234 ~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~--~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~ 311 (805)
...+.|..-+..-+....+ ...+....+ ...+.|.|... +.|..|....+..+.+.+. ...+.....
T Consensus 1637 nvsysW~~~~~n~~dg~~~--~~tGk~~~v-----t~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~ep----i~~L~L~aS 1705 (2740)
T TIGR00864 1637 NLSFSWNAILDNEPDGPAF--AGSGKGAKL-----NPLEAGPCDIFLQAANLLGQATADCTIDFLEP----AGNLMLQAS 1705 (2740)
T ss_pred eeEEEEEEecCCCCCCccc--cccCceeEE-----ecCCCceEEEEEEEeecccceeeEEEEEEEEE----cCceEEecc
Confidence 4677786511100000000 111112223 23567888765 5588888888777777652 233333333
Q ss_pred CcccccCCCeEEEEEEEeecCCCCcEEEEEECCE-EccCCCceEEEEeCcEEEEEEcccCcCCceEEEEE--EEeCceee
Q psy2166 312 SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGK-PIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCR--AWNKYGED 388 (805)
Q Consensus 312 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~-~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~--a~n~~g~~ 388 (805)
... +..|+.++|.-... ......+.|..++- .......+ + .-.....|.|... |.|..|..
T Consensus 1706 ~~~-aavn~~V~fs~~lt--~GS~vty~W~~gdG~s~~~s~p~----------~---tHtf~~~G~y~VtVta~N~vss~ 1769 (2740)
T TIGR00864 1706 DNP-AAVNALINLSAELA--EGSGLQYRWFLEEGDDLETSEPF----------M---SHSFPSAGLHLVTMKAFNELGSA 1769 (2740)
T ss_pred CCc-ccCCCeEEEEEEec--CCCCcEEEEEECCCCCcccCCCc----------e---EEEccCCceEEEEEEEEcccccc
Confidence 333 67799999988776 67778999987652 21111110 0 0124567888555 55888888
Q ss_pred EEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCC
Q psy2166 389 FTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD 468 (805)
Q Consensus 389 ~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (805)
..+..+.|+++..
T Consensus 1770 ~~s~~V~VqepV~------------------------------------------------------------------- 1782 (2740)
T TIGR00864 1770 NASEEVDVQEPIS------------------------------------------------------------------- 1782 (2740)
T ss_pred ceeEEEEEEeccc-------------------------------------------------------------------
Confidence 8777777765421
Q ss_pred ceEEEeecccCCCCCCcccccCCCCCCCceEecCC-CcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE
Q psy2166 469 LVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQIS-DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT 547 (805)
Q Consensus 469 ~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~ 547 (805)
...|..... ....+..|..+.|.-.+.. |.+ ..+.|..+|..-..+
T Consensus 1783 --------------------------GL~i~~~~~~~~~~~~ag~~v~F~a~vst-Gsn-Vsw~W~f~~g~s~~g----- 1829 (2740)
T TIGR00864 1783 --------------------------GLKIRAADAGEQNFFAADSSVCFQGELAT-GTN-VSWCWAIDGGSSKMG----- 1829 (2740)
T ss_pred --------------------------cceEecCCCCcccceecCcEEEEEEEccC-CCe-eEEEEEeCCCCcccc-----
Confidence 111111111 1112557888888888763 544 388888775421111
Q ss_pred EeeCCEEEEEEccCCCCCCEEEEE--EEEcCCcceEEEEEEEEeeeee-eeecC--------------------CCCeEE
Q psy2166 548 FHDFGIVILDILYCYEENSGVYEC--RATNKYGSDVTKASLKCVSKTN-LILES--------------------QLPEVE 604 (805)
Q Consensus 548 ~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~~~-~~~~~--------------------~~p~v~ 604 (805)
.... .+..++|.|+. .|.|..+....+.++.|+.+.. +.+.. +.-.+.
T Consensus 1830 ----k~v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~ 1900 (2740)
T TIGR00864 1830 ----KHAC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFR 1900 (2740)
T ss_pred ----ceeE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEE
Confidence 1111 24578999965 6679999988888888877652 22211 112556
Q ss_pred EEEC-CEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCC
Q psy2166 605 WFYN-GKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGV 683 (805)
Q Consensus 605 W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~ 683 (805)
|... |.+.. ...+.. + ...-.+-........|+|..+...+...+.|.++-.
T Consensus 1901 w~fGdgs~~~-------~t~~~t--~-~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~----------------- 1953 (2740)
T TIGR00864 1901 LQIGGAAPEV-------LQPGPR--F-SHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVR----------------- 1953 (2740)
T ss_pred EEeCCCCcee-------ecCCCe--E-EeecCCCCcEEEEEEEEeccceeeeeEEEEEEEecc-----------------
Confidence 6553 22111 001111 0 111223334444678899999988888888876311
Q ss_pred CCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 684 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 684 ~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
-+.+...-...+..|+..+|...+. .|.| ..+.|++.-+.+..+..+ ...+...+..+ ...|
T Consensus 1954 ---------gL~I~~~c~~~~~~g~~~tF~A~v~-~g~~-V~f~W~f~~~~~~g~~~~--~~~G~~vty~~-----~~~G 2015 (2740)
T TIGR00864 1954 ---------GLQIPDCCAAGIATGEEKNFTANVQ-RGKP-VAFAWTFDLHHLHGDSLV--IHMGKDVSYTA-----EAAG 2015 (2740)
T ss_pred ---------ceEecCCcccceecCceEEEEEEEe-cCCc-eEEEEEeeecccCCCcce--eecCCceEEcc-----CCCc
Confidence 1111111110267899999999997 3554 469999876655544432 22233223333 3689
Q ss_pred EEEEE--EEcCCccEEEEEEEEEEE
Q psy2166 764 VYTCR--ATNKWGQAEISVNLECVV 786 (805)
Q Consensus 764 ~Y~C~--a~N~~G~~~~~~~l~V~~ 786 (805)
.|+.. |.|.+|....+..+.|+.
T Consensus 2016 ~~~I~v~A~N~l~s~n~t~~i~VQ~ 2040 (2740)
T TIGR00864 2016 LLEIQLGAFNALGAENITLQLEAQD 2040 (2740)
T ss_pred EEEEEEEEEcccCcccccEEEEEEe
Confidence 99865 889999887766666654
No 174
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.20 E-value=8.9e-11 Score=95.97 Aligned_cols=78 Identities=24% Similarity=0.354 Sum_probs=60.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCC--CeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCc-cEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH--RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG-QAEIS 779 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~ 779 (805)
.+.+|+++.|.|.+. + |.+.+.|+|++..+.... ..++....+ .|.|.++..+|+|.|+|.|.|..+ ....+
T Consensus 7 ~v~~g~~v~L~C~~~--~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 7 TVVEGNSVFLECSPK--S-NLASVVWLFQGGPLQRKEEPEERLLVTED--GLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred EEECCCcEEEEEeCC--C-CCceEEEEECCcccccccCcCceEEEcCC--CEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 789999999999987 6 888999999998776653 122222222 499999999999999999997654 66667
Q ss_pred EEEEEE
Q psy2166 780 VNLECV 785 (805)
Q Consensus 780 ~~l~V~ 785 (805)
.+|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 777775
No 175
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.19 E-value=1.9e-10 Score=94.11 Aligned_cols=79 Identities=13% Similarity=0.263 Sum_probs=59.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEc--------cCCCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--------EASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
++.+|+++.|.|.+. |.|.|.|.|+|++..+ ..+.++.+... .+...|.|.++..+|+|.|+|.|.. .
T Consensus 8 tv~~G~tv~L~C~v~--g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-~ 84 (95)
T cd05882 8 TVAVGGTVTLKCGVK--EHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT-M 84 (95)
T ss_pred EEecCCcEEEEEEEe--CCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-e
Confidence 899999999999999 9999999999877532 23455554333 3457999999999999999999988 2
Q ss_pred ccEEEEEEEEE
Q psy2166 774 GQAEISVNLEC 784 (805)
Q Consensus 774 G~~~~~~~l~V 784 (805)
-.....++|+|
T Consensus 85 ~~~~~~~~~~v 95 (95)
T cd05882 85 PVRTAKATVTV 95 (95)
T ss_pred ccccEEEEEEC
Confidence 24444444443
No 176
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.19 E-value=6.9e-11 Score=93.27 Aligned_cols=65 Identities=25% Similarity=0.405 Sum_probs=50.0
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCC--CceEEEeeCCEEEEEEccCC----CCCCEEEEEEEEcCCcceEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCY----EENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~----~~d~G~Y~C~a~n~~g~~~~ 582 (805)
++|.|.+. |.|.|+|+|+|||..+... .++.+....+ .|.|..+. .+|+|.|+|.|.|..|....
T Consensus 1 i~l~C~~~--G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAK--GNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG--TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCc--ccCCCeEEEEECCeECCCCCCCCEEEeCCCC--EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 47999999 7899999999999998543 3444333333 57777764 37899999999999998654
No 177
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.17 E-value=1.4e-10 Score=91.19 Aligned_cols=65 Identities=23% Similarity=0.362 Sum_probs=48.9
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccC--CCceEEEeeCCEEEEEEccCCC----CCCEEEEEEEEcCCcceEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPH--GHRYRTFHDFGIVILDILYCYE----ENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~--~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~n~~g~~~~ 582 (805)
+.|.|.+. |.|.|+|+|+|||.++.. ..++.+...++ .|.|..+.. .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~--G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAK--GKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCc--ccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 57999999 889999999999998743 33444333344 466665553 3789999999999998654
No 178
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.17 E-value=8.4e-10 Score=98.82 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=82.0
Q ss_pred EEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC-cEEEE
Q psy2166 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE-LKVEW 340 (805)
Q Consensus 262 ~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~-~~v~W 340 (805)
+|.|.+++.+|+|.|.|.+.+..+..+..+.|.|. .+|.+...+.... ..+|..++|.|.+.+ ..|. +.|.|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~-----~~P~v~~~~~~~~-~~~~~~~~L~C~a~g-~~P~~~~i~W 74 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS-----EPPRVRLSLEKLV-SMIEEPQTLICHIAG-YYPLDVQVEW 74 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe-----cCCceEEeCCCce-eecCCcEEEEEEECC-CCCCCeEEEE
Confidence 69999999999999999999988888888888886 5667665555433 447899999999984 3454 68999
Q ss_pred EECCEEccC----CCce-----EEEEeC---cEEEEEEcccCcCCceEEEEEEEeCc
Q psy2166 341 FHNGKPIFH----KNRV-----KMVSDF---GFVVMDIAYVQSHDSGEYVCRAWNKY 385 (805)
Q Consensus 341 ~~~g~~l~~----~~~~-----~~~~~~---~~~~l~i~~v~~~d~G~Y~C~a~n~~ 385 (805)
+++|..... .... ....++ ....|.+..-..++.+.|+|.+.+..
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 75 TREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred EECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 999854221 0111 111111 11346666555556779999998764
No 179
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.17 E-value=2.4e-10 Score=91.70 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=57.8
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCC----ceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCc--ceEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGH----RYRTFHDFGIVILDILYCYEENSGVYECRATNKYG--SDVTKA 584 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g--~~~~~~ 584 (805)
|++++|.|.+. +.|.+.+.|+++|+...... +..+......+.|.|.+++.+|+|.|+|.|.|..+ ....++
T Consensus 1 Ge~~~l~C~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 1 GETITVNCIVQ--GNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred CCcEEEEEEEE--CCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 78999999999 67889999999886542211 11111122356899999999999999999999877 566667
Q ss_pred EEEEe
Q psy2166 585 SLKCV 589 (805)
Q Consensus 585 ~l~V~ 589 (805)
+|+|.
T Consensus 79 ~i~V~ 83 (84)
T cd05861 79 NITVH 83 (84)
T ss_pred EEEEe
Confidence 77664
No 180
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.16 E-value=4.4e-10 Score=91.57 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=69.2
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccC--CCceEEEee----CCEEEEEEccCCCCC-CE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH--GHRYRTFHD----FGIVILDILYCYEEN-SG 567 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~--~~~~~~~~~----~~~~~L~i~~v~~~d-~G 567 (805)
||.+ ...... .+.+|++++|.|.+.+ .+++..|.|.+++..|.. ..++.+... +..+.|.|.++...| .|
T Consensus 2 pP~i-~~~~s~-~~~~G~~~~L~C~~~s-~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g 78 (98)
T cd05898 2 PPII-SSEQVQ-YAVRGERGKVKCFIGS-TPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQT 78 (98)
T ss_pred CCEE-ecCceE-EEeCCCcEEEEEEEcc-CCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCc
Confidence 4444 333333 4899999999999974 445557899999888754 357777554 468899999998767 79
Q ss_pred EEEEEEEcCCcceEEEEEE
Q psy2166 568 VYECRATNKYGSDVTKASL 586 (805)
Q Consensus 568 ~Y~C~a~n~~g~~~~~~~l 586 (805)
.|.|.|.|..|.+...+.|
T Consensus 79 ~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 79 HYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEEeCCccceEEEEe
Confidence 9999999999999888776
No 181
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.16 E-value=2.9e-10 Score=90.44 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=55.8
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC-CceEEEecCcEEEEEEcccccCCCeEEEEEEEeC
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG-SRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 146 (805)
.+..+..|+++.|.|.+. .+.+.|.|++||.+|..+ .++.+.. + .|.|.+++.+|+|.|+|.|.+.
T Consensus 4 ~~~~v~~G~~v~L~C~~~---~~~~~i~W~~ng~~i~~~~~r~~~~~-~---~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 4 RQRTFKLGNNAELKCSPK---SNLARVVWKFDGKVLTPESAKYLLYR-D---GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred ceEEEECCCCEEEEEECC---CCCCeEEEEECCEECCCCCceEEEEC-C---cEEEeCCCHHHCEEEEEEEEec
Confidence 367889999999999975 467899999999999876 4665543 3 5999999999999999999876
No 182
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.16 E-value=1.5e-05 Score=98.24 Aligned_cols=468 Identities=15% Similarity=0.122 Sum_probs=258.6
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEE--EEeCCeeEEEEE
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR--AWNLAGETFTST 154 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~--a~n~~g~~~~~~ 154 (805)
.+..|..+.|.-.+. ......+.|..-+..-..+.-+ ...+....++ ..+.|.|... |.|..|....+.
T Consensus 1619 ~~~t~~~v~l~~~~~--~GTnvsysW~~~~~n~~dg~~~--~~tGk~~~vt-----~~~pG~Y~VtL~aSN~vG~~t~s~ 1689 (2740)
T TIGR00864 1619 YFETNHTVQFHAGFK--DGTNLSFSWNAILDNEPDGPAF--AGSGKGAKLN-----PLEAGPCDIFLQAANLLGQATADC 1689 (2740)
T ss_pred eeccCCEEEeeeccC--CCCeeEEEEEEecCCCCCCccc--cccCceeEEe-----cCCCceEEEEEEEeecccceeeEE
Confidence 344566677776655 3556678886611100000001 1122222333 3677888665 468888888888
Q ss_pred EEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCC
Q psy2166 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT 234 (805)
Q Consensus 155 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~ 234 (805)
+++|..+..-+ ....... .+..|+.++|.-.. .....
T Consensus 1690 ~i~v~epi~~L----------------------------------------~L~aS~~-~aavn~~V~fs~~l--t~GS~ 1726 (2740)
T TIGR00864 1690 TIDFLEPAGNL----------------------------------------MLQASDN-PAAVNALINLSAEL--AEGSG 1726 (2740)
T ss_pred EEEEEEEcCce----------------------------------------EEeccCC-cccCCCeEEEEEEe--cCCCC
Confidence 88876542211 1111111 25678899998866 45556
Q ss_pred eEEEEEECCEE-ccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEE--EEcCCeeEEEEEEEEEeccCCCCCCeEEecCC
Q psy2166 235 MTVEFLYNGKP-IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR--ATNKWGQAEISVNLECVDKSKGQPPKFTSHIK 311 (805)
Q Consensus 235 ~~i~W~k~g~~-l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~--~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~ 311 (805)
..++|...+.. ...... ... -+....|.|... |.|..+....+..+.|.+... ...+.....
T Consensus 1727 vty~W~~gdG~s~~~s~p-~~t------------Htf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~--GL~i~~~~~ 1791 (2740)
T TIGR00864 1727 LQYRWFLEEGDDLETSEP-FMS------------HSFPSAGLHLVTMKAFNELGSANASEEVDVQEPIS--GLKIRAADA 1791 (2740)
T ss_pred cEEEEEECCCCCcccCCC-ceE------------EEccCCceEEEEEEEEccccccceeEEEEEEeccc--cceEecCCC
Confidence 89999875531 111111 000 023457888765 558888777777777765331 122222211
Q ss_pred -CcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEE--EEeCceee
Q psy2166 312 -SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCR--AWNKYGED 388 (805)
Q Consensus 312 -~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~--a~n~~g~~ 388 (805)
....+..|..+.|.-.++ ...+..+.|..++..-.. +.... ....+.|.|+-. |.|..+..
T Consensus 1792 ~~~~~~~ag~~v~F~a~vs--tGsnVsw~W~f~~g~s~~---------gk~v~-----~Tf~~aG~ytV~L~AsN~vs~~ 1855 (2740)
T TIGR00864 1792 GEQNFFAADSSVCFQGELA--TGTNVSWCWAIDGGSSKM---------GKHAC-----MTFPDAGTFAIRLNASNAVSGK 1855 (2740)
T ss_pred CcccceecCcEEEEEEEcc--CCCeeEEEEEeCCCCccc---------cceeE-----EecCCCeEEEEEEEEEcccCcc
Confidence 111255688888888765 344457888776432111 11111 346689988655 66888888
Q ss_pred EEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCC
Q psy2166 389 FTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD 468 (805)
Q Consensus 389 ~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (805)
..+..+.|+++...
T Consensus 1856 ~~s~~~~VQe~I~~------------------------------------------------------------------ 1869 (2740)
T TIGR00864 1856 SASREFFAEEPIFG------------------------------------------------------------------ 1869 (2740)
T ss_pred eeeeeEEEEEecce------------------------------------------------------------------
Confidence 88888888654311
Q ss_pred ceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEEC-CEEcc--CCCce
Q psy2166 469 LVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN-GKKLP--HGHRY 545 (805)
Q Consensus 469 ~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~-g~~l~--~~~~~ 545 (805)
+...... ..+..|+.++|.+.+. .-+...+.|... |.+.. .+.++
T Consensus 1870 -----------------------------L~L~as~-~~~~~n~~v~fsa~l~--~GS~Vtf~w~fGdgs~~~~t~~~t~ 1917 (2740)
T TIGR00864 1870 -----------------------------LELKASK-KIAAIGEKVEFQILLA--AGSAVNFRLQIGGAAPEVLQPGPRF 1917 (2740)
T ss_pred -----------------------------EEEeccc-ccccCCCEEEEEEEec--CCCceEEEEEeCCCCceeecCCCeE
Confidence 1111111 1277899999999998 445789999865 33321 11111
Q ss_pred EEEeeCCEEEEEEccCCCCCCEEE--EEEEEcCCcceEEEEEEEEeeee-eee--ecC-------------------CCC
Q psy2166 546 RTFHDFGIVILDILYCYEENSGVY--ECRATNKYGSDVTKASLKCVSKT-NLI--LES-------------------QLP 601 (805)
Q Consensus 546 ~~~~~~~~~~L~i~~v~~~d~G~Y--~C~a~n~~g~~~~~~~l~V~~~~-~~~--~~~-------------------~~p 601 (805)
. . ...--|.| +..|.|..+.......+.|..+- .+. ..| ..-
T Consensus 1918 ~------------H--sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V 1983 (2740)
T TIGR00864 1918 S------------H--SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPV 1983 (2740)
T ss_pred E------------e--ecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCce
Confidence 1 1 12234555 45666888776666666554431 110 001 111
Q ss_pred eEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEE--EEEEeCCcceEEEEEEEEeeccccccccccccccCC
Q psy2166 602 EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYE--CRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQ 679 (805)
Q Consensus 602 ~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~--C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~ 679 (805)
.+.|+..-+.+..+..+... +...+.. ....|.|. .+|.|..|.......+.|+.+...
T Consensus 1984 ~f~W~f~~~~~~g~~~~~~~--G~~vty~-----~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~------------ 2044 (2740)
T TIGR00864 1984 AFAWTFDLHHLHGDSLVIHM--GKDVSYT-----AEAAGLLEIQLGAFNALGAENITLQLEAQDALMD------------ 2044 (2740)
T ss_pred EEEEEeeecccCCCcceeec--CCceEEc-----cCCCcEEEEEEEEEcccCcccccEEEEEEeheee------------
Confidence 67887653333333322111 1111122 24678776 468899999887777888753211
Q ss_pred CCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCC-CeEEEEEEC-CEEccCCCCeEEEeeCcEEEEEEcCC
Q psy2166 680 PAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYN-GKPIEASHRIRTVHAFGMVVLEILGT 757 (805)
Q Consensus 680 ~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p-~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~v 757 (805)
-.+...+. ....|..+.|+|.+. ..+ ...+.|-++ |......+..++.+.
T Consensus 2045 ------------~~L~~~p~---~~~~n~~v~f~~~~~--~~~~~v~~~WDFGDGt~~~~T~~~~~sHt----------- 2096 (2740)
T TIGR00864 2045 ------------AALQAGPQ---DCFTNKMAQFEAATS--PKPNFMACHWDFGDGSAGQDTDEPRAEHE----------- 2096 (2740)
T ss_pred ------------EEEeecCc---ceecCceEEEEEEEc--cCCCcEEEEEEecCCCCccccCCceeEEE-----------
Confidence 11111222 456688999999997 334 468999985 555443322222111
Q ss_pred CCCCCEEEEEE--EEcCCccEEEEEEEEEEEe
Q psy2166 758 KIEDTGVYTCR--ATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 758 ~~~d~G~Y~C~--a~N~~G~~~~~~~l~V~~~ 787 (805)
....|.|... |.|.+......+++.|++.
T Consensus 2097 -Y~r~G~Y~V~V~a~N~VS~~~a~~~i~V~vl 2127 (2740)
T TIGR00864 2097 -YLHPGDYRVQVNASNLVSFFSAHAEINVQVL 2127 (2740)
T ss_pred -ecCCccEEEEEEEEcceeeeeeEEEEEEEEe
Confidence 1145888765 7899998888888888775
No 183
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.14 E-value=3.4e-10 Score=93.06 Aligned_cols=84 Identities=17% Similarity=0.330 Sum_probs=62.4
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECC--------EecCCCCceEEEec-CcEEEEEEcccccCCCeEEEEE
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--------KPLELGSRFKTTAD-FGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--------~~i~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+..++.+.+|++++|.|.+. +.|.+.|.|++.+ .....++|+.+..+ ....+|.|.+++.+|+|.|+|.
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~--~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVD--QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred ccceEEEecCCcEEEEEEEe--cCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEE
Confidence 34478999999999999998 6788899998632 22334567776433 3557899999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy2166 143 AWNLAGETFTSTTIYC 158 (805)
Q Consensus 143 a~n~~g~~~~~~~l~V 158 (805)
+....+ ....+.|+|
T Consensus 81 ~~t~~~-~~~~~~l~v 95 (95)
T cd07701 81 LFTMPV-KTSKAYLTV 95 (95)
T ss_pred eEeecC-ccEEEEEEC
Confidence 987432 244555543
No 184
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.14 E-value=2.7e-10 Score=89.62 Aligned_cols=66 Identities=26% Similarity=0.403 Sum_probs=50.5
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEcc--CCCceEEEeeCCEEEEEEccCC----CCCCEEEEEEEEcCCcceEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLP--HGHRYRTFHDFGIVILDILYCY----EENSGVYECRATNKYGSDVTK 583 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~----~~d~G~Y~C~a~n~~g~~~~~ 583 (805)
+.|.|.+. |.|.|.|+|+|+|+.+. .+.++.+...++ .|.|..+. .+|+|.|+|.|.|..|.....
T Consensus 1 ~~l~C~~~--G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAK--GNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEecc--ccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 47999999 88999999999999864 445565543343 57787653 246999999999999987543
No 185
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.14 E-value=9.3e-11 Score=94.52 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=58.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEc--cCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l--~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
.+.+|+.+.|.|..- .|.|.+.+.|++++.++ ..+.+..+....| .|.|.+|+.+|+|.|+|.|+|.++..
T Consensus 14 ~v~eG~~~~L~C~pP-~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 14 KVKEGWGVVLFCDPP-PHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeeCCcEEEeeCCC-CCCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence 789999999999875 58999999999999764 3344444454445 69999999999999999999987654
No 186
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.13 E-value=5.4e-10 Score=91.71 Aligned_cols=80 Identities=24% Similarity=0.476 Sum_probs=60.0
Q ss_pred CeEEecCCCCceec---CCCcEEEEEEEecCCCCCceEEEEECCEecCCC--CceEEEecCcEEEEEEcccc-cCCCeEE
Q psy2166 66 PVFIVPLKPEFKLG---EAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--SRFKTTADFGFVTLDLTEVY-DRDQGIY 139 (805)
Q Consensus 66 p~~~~~~~~~~~v~---~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~--~~~~~~~~~~~~~L~I~~~~-~~D~G~Y 139 (805)
|.|...+. ++.+. .|+.++|.|.+. |+|.+.|+|+|++..+... .++.+. ++ .|.|.++. .+|+|.|
T Consensus 2 P~f~~~p~-~~~~~~~~~~~~~~l~C~~~--g~p~p~i~W~k~~~~l~~~~~~~~~~~--~~--~L~i~~~~~~~d~G~Y 74 (91)
T cd04967 2 PVFEEQPD-DTIFPEESDEGKVSLNCRAR--GSPPPTYRWLMNGTEIDDEPDSRYSLV--GG--NLVISNPSKAKDAGRY 74 (91)
T ss_pred CeeEeCCC-CEEccCCCCCCEEEEEEeee--EcCCCEEEEEECCEECCCCCCCCEEEE--CC--EEEEecCCccCCCEEE
Confidence 56666554 44443 346799999998 6899999999999988533 344432 22 68898887 4999999
Q ss_pred EEEEEeCCeeEEE
Q psy2166 140 TCRAWNLAGETFT 152 (805)
Q Consensus 140 ~C~a~n~~g~~~~ 152 (805)
+|.|.|..|...+
T Consensus 75 ~C~a~N~~G~~~S 87 (91)
T cd04967 75 QCLASNIVGTVLS 87 (91)
T ss_pred EEEEEcCCCEEEe
Confidence 9999999987655
No 187
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.13 E-value=2.1e-10 Score=89.98 Aligned_cols=66 Identities=23% Similarity=0.357 Sum_probs=51.6
Q ss_pred eEEecCCCCceecCCCcEEEEEEEecCCCCC-ceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 67 VFIVPLKPEFKLGEAQPLHLEAQVEPKNDPN-LKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 67 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
.+.+.+ +...+.+|+.++|+|.+. +.|. ..+.|+|||..+... + .+|.|.++ .+|+|.|+|.|.+
T Consensus 2 vv~~~P-~~~~v~~G~~V~L~C~~~--~~p~~~~~~W~kng~~l~~~--------~--~~l~i~~~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 2 VVSLDP-PWTTIFQGEKVTLTCNGF--NSPEQNSTQWYHNGKLLETT--------T--NSYRIRAA-NNDSGEYRCQTQG 67 (78)
T ss_pred eEEeCC-CCeEeeCCCCEEEEEeCC--CCCCCccEEEEECCEEeecc--------C--CeEEEeec-ccCCEEeEEECCC
Confidence 344443 367899999999999998 4554 469999999987321 1 26899999 9999999999987
Q ss_pred C
Q psy2166 146 L 146 (805)
Q Consensus 146 ~ 146 (805)
.
T Consensus 68 ~ 68 (78)
T cd05752 68 S 68 (78)
T ss_pred C
Confidence 5
No 188
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.13 E-value=2e-10 Score=91.75 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=53.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
.+.+|+.++|.|.+. .+.|.+.+.|+|+|+.+.... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 10 ~V~~G~~vtL~C~~~-~~~~~~~~~w~k~g~~~~~~~--------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 10 VVFEGEPLVLRCHGW-KNKPVYKVTYYRDGKAKKYSH--------SNSNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred eecCCCCEEEEeeCC-CCCcceEEEEEECCeEccccC--------CCceEEECccCHHHCEEEEEEEEeCCce
Confidence 689999999999985 246778999999998775321 2237999999999999999999999983
No 189
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.12 E-value=4.5e-10 Score=90.90 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=65.0
Q ss_pred EEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCC
Q psy2166 68 FIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 68 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 147 (805)
+.+..+..+.+.+|+.++|.|.+.+ +.|.+.+.|++++..+.... .. .+ ..|.|.+++.+|+|.|+|.|.|..
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~i~W~~~~~~~~~~~---~~-~~--~~L~I~~v~~~DsG~Y~C~a~n~~ 75 (85)
T cd05754 3 VTVEEPRSQEVRPGADVSFICRAKS-KSPAYTLVWTRVGGGLPSRA---MD-FN--GILTIRNVQLSDAGTYVCTGSNML 75 (85)
T ss_pred EEecCCCceEEcCCCCEEEEEEcCC-CCCCcEEEEEECCCcCCCcc---cc-cC--CEEEECCCCHHHCEEEEEEEeccC
Confidence 3455666789999999999999873 36788999999987764321 11 11 279999999999999999999999
Q ss_pred eeEEEEEEE
Q psy2166 148 GETFTSTTI 156 (805)
Q Consensus 148 g~~~~~~~l 156 (805)
|.....+.|
T Consensus 76 g~~~~~~~l 84 (85)
T cd05754 76 DTDEATATL 84 (85)
T ss_pred CeEeEEEEE
Confidence 988887765
No 190
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.12 E-value=8.5e-10 Score=89.69 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=64.7
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEE-eeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF-HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
+..|+.++|.|.+. +.|.+.+.|+|++..+......... .......|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 6 ~~~G~~~~l~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 6 VPAGSTVRLKCPAS--GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred ecCCCcEEEEEEcC--CCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 67899999999998 6788899999999988755443322 22334579999999999999999999999998888877
Q ss_pred EE
Q psy2166 587 KC 588 (805)
Q Consensus 587 ~V 588 (805)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 64
No 191
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.10 E-value=3.3e-10 Score=91.88 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=57.5
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEc-c-------------CCCCeEEEe---eCcEEEEEEcCCCCCCCEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI-E-------------ASHRIRTVH---AFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l-~-------------~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y 765 (805)
.+.+|++|+|.|.+. +.|.+.|.|+++++.. . ..+|+.... +.+.+.|+|.+++.+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s--~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEeC--CCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 678999999999998 8899999999876322 1 123333333 45677899999999999999
Q ss_pred EEEEEcCCccEE
Q psy2166 766 TCRATNKWGQAE 777 (805)
Q Consensus 766 ~C~a~N~~G~~~ 777 (805)
.|.|.|..++.+
T Consensus 81 ~C~v~~~~~~~~ 92 (94)
T cd07690 81 ICEVEDKKEEVE 92 (94)
T ss_pred EEEECCccceEE
Confidence 999999877653
No 192
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.09 E-value=3.9e-10 Score=91.59 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=62.0
Q ss_pred cccCCCeEEEEEEEeeC---CCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEE
Q psy2166 507 QLKEGQSAHFEARLTPV---TDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 583 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~---g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 583 (805)
.+.+|.++.|.|...+. .+|.|.+.|+|||+++....+... .+ ..|.|.++..+|+|.|+|.|.|..|.....
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~--~~--~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV--KG--SKLLIQNVTEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe--cC--CEEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence 37899999999987531 136789999999999976544332 22 369999999999999999999999987766
Q ss_pred EEEEEe
Q psy2166 584 ASLKCV 589 (805)
Q Consensus 584 ~~l~V~ 589 (805)
++..+.
T Consensus 82 ~t~t~~ 87 (92)
T cd05757 82 VTRTIS 87 (92)
T ss_pred EEEEEE
Confidence 655544
No 193
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.09 E-value=2.8e-10 Score=91.77 Aligned_cols=78 Identities=24% Similarity=0.366 Sum_probs=60.7
Q ss_pred EEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEec--CCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 68 FIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL--ELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 68 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
|.......+.+.+|+.++|.|.... +.|.+.|.|+||+.++ ..+.|..+...++ .|.|.+++.+|+|.|.|.|.|
T Consensus 5 f~~~~~~~~~v~eG~~~~L~C~pP~-g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n 81 (96)
T cd05727 5 FPLEERDEVKVKEGWGVVLFCDPPP-HYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSS 81 (96)
T ss_pred cCcCCcCceeeeeCCcEEEeeCCCC-CCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEe
Confidence 4444445678999999999998763 7899999999998764 3344544554333 799999999999999999999
Q ss_pred CCe
Q psy2166 146 LAG 148 (805)
Q Consensus 146 ~~g 148 (805)
...
T Consensus 82 ~~~ 84 (96)
T cd05727 82 PSS 84 (96)
T ss_pred ccc
Confidence 753
No 194
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.09 E-value=6.9e-10 Score=89.05 Aligned_cols=78 Identities=35% Similarity=0.534 Sum_probs=62.0
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
|.|...+ . .+.+|+.+.|.|.+. ++|.+.+.|++++..+..+.. .|.|.++..+|+|.|+|.|.|
T Consensus 2 P~l~~~~--~-~v~~g~~~~l~C~~~--~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~ 66 (80)
T PF13895_consen 2 PVLSSSP--Q-SVEEGDSVTLTCSVS--GNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASN 66 (80)
T ss_dssp -EEEEES--S-EEETTSEEEEEEEEE--SSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEE
T ss_pred cEEEccc--e-EEeCCCcEEEEEEEE--cccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEe
Confidence 5566555 3 789999999999999 999999999999987763321 177889999999999999999
Q ss_pred CCc-cEEEEEEEEE
Q psy2166 772 KWG-QAEISVNLEC 784 (805)
Q Consensus 772 ~~G-~~~~~~~l~V 784 (805)
..| ..+.+++|+|
T Consensus 67 ~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 67 GSGSNTSTSVNVTV 80 (80)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCCeEeeeEEeeC
Confidence 665 6666666665
No 195
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.09 E-value=3.8e-10 Score=89.84 Aligned_cols=70 Identities=23% Similarity=0.344 Sum_probs=52.2
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEc-c-------CCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce-EEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKL-P-------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD-VTKA 584 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l-~-------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~ 584 (805)
++|.|.+. |.|.|.++|+|++... . ...++....+ ..|.|.++..+|+|.|+|.|.|..|.. +..+
T Consensus 1 v~l~C~~~--G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSAE--GYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeCe--EeCCCEEEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence 57999999 7799999999964321 1 2334443332 259999999999999999999999987 5555
Q ss_pred EEEE
Q psy2166 585 SLKC 588 (805)
Q Consensus 585 ~l~V 588 (805)
.|.|
T Consensus 76 ~l~~ 79 (79)
T cd05734 76 VLTV 79 (79)
T ss_pred EEeC
Confidence 5543
No 196
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.08 E-value=7.7e-10 Score=89.08 Aligned_cols=77 Identities=21% Similarity=0.192 Sum_probs=58.8
Q ss_pred CCeEEEEEEEeecCCC--CeEEEEEECCEEccC---CCC--eEE-EeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEE
Q psy2166 707 GEIAHFEASLIPVGDQ--TMTVEFLYNGKPIEA---SHR--IRT-VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p--~~~v~W~~~g~~l~~---~~~--~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 778 (805)
|+++.|.|.+. +.| ...+.|.+.++.+.. ... ... ......++|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 Ge~~~L~C~~~--~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTAR--TELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEEE--eCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 78999999998 554 568899987764321 111 111 11234568999999999999999999999999999
Q ss_pred EEEEEEE
Q psy2166 779 SVNLECV 785 (805)
Q Consensus 779 ~~~l~V~ 785 (805)
++.|.|+
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 9999986
No 197
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.07 E-value=1.5e-09 Score=88.72 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=60.5
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEECCEec--------CCCCceEEEec-CcEEEEEEcccccCCCeEEEEEEE
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL--------ELGSRFKTTAD-FGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i--------~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
.++.+.+|++++|+|.+. +.|.+.|.|+|++..+ ..+.|+.+... ....+|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~~tv~~G~tv~L~C~v~--g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~ 82 (95)
T cd05882 5 QDETVAVGGTVTLKCGVK--EHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF 82 (95)
T ss_pred ccEEEecCCcEEEEEEEe--CCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence 367899999999999999 6788999999987543 13346654333 346799999999999999999997
Q ss_pred eCCeeEEEEEEEE
Q psy2166 145 NLAGETFTSTTIY 157 (805)
Q Consensus 145 n~~g~~~~~~~l~ 157 (805)
... .....++|+
T Consensus 83 t~~-~~~~~~~~~ 94 (95)
T cd05882 83 TMP-VRTAKATVT 94 (95)
T ss_pred eec-cccEEEEEE
Confidence 632 333444444
No 198
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.05 E-value=2.8e-09 Score=86.75 Aligned_cols=80 Identities=29% Similarity=0.404 Sum_probs=70.7
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC-CEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN-GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+..|+++.|.|.+. +.+.+.+.|+++ +..+....++..........|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 5 ~~~~g~~~~l~C~~~--~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 5 TVKEGESVTLSCEVS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred EEeCCCeEEEEEEEc--cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 788999999999998 778899999998 88888777777776665678999999999999999999999998888877
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 776
No 199
>smart00409 IG Immunoglobulin.
Probab=99.05 E-value=2.8e-09 Score=86.75 Aligned_cols=80 Identities=29% Similarity=0.404 Sum_probs=70.7
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC-CEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN-GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+..|+++.|.|.+. +.+.+.+.|+++ +..+....++..........|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 5 ~~~~g~~~~l~C~~~--~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 5 TVKEGESVTLSCEVS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred EEeCCCeEEEEEEEc--cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 788999999999998 778899999998 88888777777776665678999999999999999999999998888877
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 776
No 200
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.05 E-value=9.1e-10 Score=83.51 Aligned_cols=63 Identities=32% Similarity=0.506 Sum_probs=52.2
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
+|+++.|.|.+. +.|.+.+.|++++..+.. ...... ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 ~g~~~~l~C~~~--~~~~~~v~W~~~~~~~~~--~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAE--GDPVPNITWLKDGKPLPE--SNRLSA--SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCc--cCCCCeEEEEECCEECCC--CCEEec--CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 589999999987 889999999999998872 222222 234799999999999999999999876
No 201
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.04 E-value=2.7e-09 Score=85.89 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=67.5
Q ss_pred ccCCCCeEEEEEEEeecCCCCeE-EEEEECCEEccCCCC-eEEEeeC----cEEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMT-VEFLYNGKPIEASHR-IRTVHAF----GMVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~-v~W~~~g~~l~~~~~-~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
.|.+|+.+.|.|.++ ++|.|. +.|.+++..+..... .....+. -.+.|+|..++.+|+|.|+|.|.|..+..
T Consensus 14 ~v~~gE~~~L~V~ie--AYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 14 FVNAGENLDLIVEYE--AYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred EEECCCCEEEEEEEE--eCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 899999999999999 999998 999999987654433 1112211 24789999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2166 777 EISVNLECV 785 (805)
Q Consensus 777 ~~~~~l~V~ 785 (805)
+.++.|.|+
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 999999885
No 202
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.04 E-value=1.3e-09 Score=88.54 Aligned_cols=77 Identities=21% Similarity=0.329 Sum_probs=59.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CEE----ccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE-cCCcc
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKP----IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT-NKWGQ 775 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~~----l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~-N~~G~ 775 (805)
.+.+|+++.|.|.. +.|.|.+.|+|. |.. +....++.. ..+ .|.|.++..+|+|.|+|.|. |..|.
T Consensus 7 ~~~eG~~v~L~C~~---~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~--~~~--~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 7 YGVENNSTFLECLP---KSPQASVKWLFQRGGDQRKEEVKTEERLIH--TER--GLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEecCCcEEEEEEC---CCCCceEEEEEECCCCCccccccccccEEE--ecC--eEEEeeCChhHCEEEEEEEEccCCeE
Confidence 68899999999995 579999999983 322 112334432 223 49999999999999999998 68888
Q ss_pred EEEEEEEEEEE
Q psy2166 776 AEISVNLECVV 786 (805)
Q Consensus 776 ~~~~~~l~V~~ 786 (805)
+...++|+|..
T Consensus 80 ~~~~~~l~v~~ 90 (91)
T cd05871 80 TLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEec
Confidence 88888888853
No 203
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.04 E-value=8e-10 Score=88.29 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=53.7
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 581 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 581 (805)
+.+|++++|.|.+.. +.+.+.+.|+|+|..+.... ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus 11 V~~G~~vtL~C~~~~-~~~~~~~~w~k~g~~~~~~~--------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 11 VFEGEPLVLRCHGWK-NKPVYKVTYYRDGKAKKYSH--------SNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred ecCCCCEEEEeeCCC-CCcceEEEEEECCeEccccC--------CCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 899999999999863 56777999999998774321 223699999999999999999999988653
No 204
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.02 E-value=2e-09 Score=89.16 Aligned_cols=79 Identities=15% Similarity=0.260 Sum_probs=59.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEE--------ccCCCCeEEEe-eCcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP--------IEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~--------l~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
.+.+|++++|.|.+. +.|.+.+.|++-+.. .....++.+.. ......|.|.+++.+|+|.|+|.|.+..
T Consensus 8 ~v~~G~~v~L~C~~~--~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 8 TVVEGGTATLKCRVK--NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred EEcCCCCEEEEEEEC--CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 799999999999998 888899999862211 11234665532 2345689999999999999999999876
Q ss_pred ccEEEEEEEEE
Q psy2166 774 GQAEISVNLEC 784 (805)
Q Consensus 774 G~~~~~~~l~V 784 (805)
. .+.++.|+|
T Consensus 86 ~-~~~~~~~~v 95 (95)
T cd05717 86 V-QTAKATVTV 95 (95)
T ss_pred C-ceEEEEEEC
Confidence 4 466666665
No 205
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.02 E-value=1.8e-09 Score=88.18 Aligned_cols=78 Identities=24% Similarity=0.446 Sum_probs=59.9
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC----ceEEEecCcEEEEEEcccccCCCeEEEEEEEeCC-ee
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS----RFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLA-GE 149 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~-g~ 149 (805)
.+.+.+|+.++|.|.+. + |.+.+.|+|++..+.... ++..... .|.|.+++.+|+|.|+|.|.+.. +.
T Consensus 5 ~~~v~~g~~v~L~C~~~--~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~~~~~~~ 77 (89)
T cd04979 5 VVTVVEGNSVFLECSPK--S-NLASVVWLFQGGPLQRKEEPEERLLVTED----GLLIRSVSPADAGVYTCQSVEHGFKQ 77 (89)
T ss_pred EEEEECCCcEEEEEeCC--C-CCceEEEEECCcccccccCcCceEEEcCC----CEEEccCCHHHCEEEEEEEecCccce
Confidence 46788999999999987 3 778999999998876542 4433322 59999999999999999998764 34
Q ss_pred EEEEEEEEEe
Q psy2166 150 TFTSTTIYCS 159 (805)
Q Consensus 150 ~~~~~~l~V~ 159 (805)
...+..|.|.
T Consensus 78 ~~~~~~l~V~ 87 (89)
T cd04979 78 TLATYSLNVL 87 (89)
T ss_pred eEeEEEEEEe
Confidence 4555666653
No 206
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.01 E-value=1.4e-09 Score=84.35 Aligned_cols=64 Identities=8% Similarity=0.079 Sum_probs=50.6
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeC---cEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF---GMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
+.|.|... .|+|++.|+|||||++|..... ....+. ...+|+|...+.+|+|.|+|+|.|.++.
T Consensus 2 ~~L~C~s~-~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSP-RSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCC-CccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 78999998 5899999999999999975421 111111 1346999999999999999999999885
No 207
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.01 E-value=1.4e-09 Score=88.21 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=56.5
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEECCEecC--------------CCCceEEEe---cCcEEEEEEcccccCCCeE
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE--------------LGSRFKTTA---DFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~--------------~~~~~~~~~---~~~~~~L~I~~~~~~D~G~ 138 (805)
+.+.+|++|+|+|.+. +.+.+.+.|+++++... ..+|+.... +.+.++|+|.+++.+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s--~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 2 VLGKKGDTAELPCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred eEeeCCCCEEEEEEeC--CCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEE
Confidence 4678999999999998 67888999998774321 123444444 4566789999999999999
Q ss_pred EEEEEEeCCeeE
Q psy2166 139 YTCRAWNLAGET 150 (805)
Q Consensus 139 Y~C~a~n~~g~~ 150 (805)
|+|.+.|..++.
T Consensus 80 Y~C~v~~~~~~~ 91 (94)
T cd07690 80 YICEVEDKKEEV 91 (94)
T ss_pred EEEEECCccceE
Confidence 999998876554
No 208
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.00 E-value=5.3e-10 Score=89.99 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=57.0
Q ss_pred ccCCCCeEEEEEE-EeecCCCCeEEEEEECCEE-ccCCCCeEEEeeCcEEEEEEcCCCCCCCE-EEEEEEEcCCccE
Q psy2166 703 NLSEGEIAHFEAS-LIPVGDQTMTVEFLYNGKP-IEASHRIRTVHAFGMVVLEILGTKIEDTG-VYTCRATNKWGQA 776 (805)
Q Consensus 703 ~v~~G~~~~l~C~-~~~~g~p~~~v~W~~~g~~-l~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~G~~ 776 (805)
.|.+|+.+.|.|. .. |.|.|.|.|++++.. +..+.|+.+..+ | .|.|.+|..+|+| .|.|.|.|.+...
T Consensus 14 ~V~eG~~~~L~C~pP~--g~P~P~i~W~~~~~~~i~~~~Ri~~~~~-G--nL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 14 EVEEGDSVVLPCNPPK--SAVPLRIYWMNSDLLHITQDERVSMGQN-G--NLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred EEecCCCEEEEecCCC--CCCCCEEEEECCCCccccccccEEECCC-c--eEEEEEEehhhCCCCeEEEEEcccccc
Confidence 8999999999997 46 999999999988754 445566655444 4 6999999999999 7999999987543
No 209
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.00 E-value=8.8e-10 Score=88.71 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=63.3
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEe-cCCCCceEEEecCcEEEEEEcccccCCCe-EEEEEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKP-LELGSRFKTTADFGFVTLDLTEVYDRDQG-IYTCRA 143 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~-i~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a 143 (805)
|.|.......+.|.+|+.+.|.|... .|.|.|.|.|++++.. +..+.|+.+..+| .|.|.+++.+|+| .|.|.|
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP-~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a 78 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPP-KSAVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHA 78 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCC-CCCCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEE
Confidence 55555555678999999999999853 2799999999987654 4556677777665 7999999999999 899999
Q ss_pred EeCC
Q psy2166 144 WNLA 147 (805)
Q Consensus 144 ~n~~ 147 (805)
.|..
T Consensus 79 ~~~~ 82 (95)
T cd05845 79 HFPG 82 (95)
T ss_pred Eccc
Confidence 9875
No 210
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.00 E-value=3.5e-09 Score=87.76 Aligned_cols=83 Identities=17% Similarity=0.318 Sum_probs=60.2
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECCEec--------CCCCceEEEe-cCcEEEEEEcccccCCCeEEEEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL--------ELGSRFKTTA-DFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i--------~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
..++.+.+|++++|.|.+. +.+.+.+.|++.+..+ ....||.+.. .+...+|+|.+++.+|+|.|+|.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~--~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVK--NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSL 81 (95)
T ss_pred CCcEEEcCCCCEEEEEEEC--CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEE
Confidence 3467899999999999998 4677899998633211 1235776632 334568999999999999999999
Q ss_pred EeCCeeEEEEEEEEE
Q psy2166 144 WNLAGETFTSTTIYC 158 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V 158 (805)
.+... ....++|+|
T Consensus 82 ~~~~~-~~~~~~~~v 95 (95)
T cd05717 82 YTMPV-QTAKATVTV 95 (95)
T ss_pred ecCCC-ceEEEEEEC
Confidence 87642 345555553
No 211
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.98 E-value=2.9e-09 Score=85.78 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=59.9
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCC---C--ceEE-EeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG---H--RYRT-FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~---~--~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 584 (805)
|+++.|.|.+.+...+.+.+.|.+.++.+... . +... ......+.|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78999999998534567789999887654211 1 1111 1123456899999999999999999999999999999
Q ss_pred EEEEe
Q psy2166 585 SLKCV 589 (805)
Q Consensus 585 ~l~V~ 589 (805)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 98885
No 212
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.93 E-value=1.9e-08 Score=81.69 Aligned_cols=82 Identities=28% Similarity=0.461 Sum_probs=69.7
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC-CEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN-GKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~-g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 153 (805)
.+.+.+|++++|.|.+. +.+.+.+.|+++ +..+....++.........+|.|.+++.+|+|.|.|.+.+..+.....
T Consensus 3 ~~~~~~g~~~~l~C~~~--~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 3 SVTVKEGESVTLSCEVS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred cEEEeCCCeEEEEEEEc--cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 46788999999999998 457889999998 888887778887777666789999999999999999999887777666
Q ss_pred EEEEE
Q psy2166 154 TTIYC 158 (805)
Q Consensus 154 ~~l~V 158 (805)
..|.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 66655
No 213
>smart00409 IG Immunoglobulin.
Probab=98.93 E-value=1.9e-08 Score=81.69 Aligned_cols=82 Identities=28% Similarity=0.461 Sum_probs=69.7
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC-CEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN-GKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~-g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 153 (805)
.+.+.+|++++|.|.+. +.+.+.+.|+++ +..+....++.........+|.|.+++.+|+|.|.|.+.+..+.....
T Consensus 3 ~~~~~~g~~~~l~C~~~--~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 3 SVTVKEGESVTLSCEVS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred cEEEeCCCeEEEEEEEc--cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 46788999999999998 457889999998 888887778887777666789999999999999999999887777666
Q ss_pred EEEEE
Q psy2166 154 TTIYC 158 (805)
Q Consensus 154 ~~l~V 158 (805)
..|.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 66655
No 214
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.93 E-value=1.6e-08 Score=81.91 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=56.8
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEECCEec--------CCCCceEEEe-cCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL--------ELGSRFKTTA-DFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i--------~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
+++.+.+|++++|+|.+.. .....+.|++.+..+ ..+.||.... ++...+|+|.+++.+|+|.|.|.+.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~--~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~ 82 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKN--NDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY 82 (95)
T ss_pred CceEEcCCCcEEEEEEEcc--CCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence 3678999999999999994 445578888766332 3566888765 5678899999999999999999997
Q ss_pred eC
Q psy2166 145 NL 146 (805)
Q Consensus 145 n~ 146 (805)
..
T Consensus 83 t~ 84 (95)
T cd05881 83 TD 84 (95)
T ss_pred cc
Confidence 54
No 215
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.92 E-value=3e-09 Score=80.82 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=49.2
Q ss_pred CCeEEEEEEE-eecCCCCeEEEEEECCEEccCCCCeEEEeeCcE--EEEEEcCCCCCCCEEEEEEE
Q psy2166 707 GEIAHFEASL-IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM--VVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 707 G~~~~l~C~~-~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a 769 (805)
|++++|.|.+ . +.|.+.+.|+|+++.+.............. ..|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSS--GPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEE--SSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCC--CCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 5 889999999999987766655444333332 13999999999999999987
No 216
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.92 E-value=1.1e-08 Score=83.25 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=57.8
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe----cCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE-eCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP----LELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW-NLA 147 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~----i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~-n~~ 147 (805)
.+.+.+|+.++|.|... .|.+.+.|+|+ +.. +..+.++.... ..|.|.+++.+|+|.|+|.+. +..
T Consensus 5 ~~~~~eG~~v~L~C~~~---~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~----~~L~I~~~~~~DsG~Y~C~a~~~~~ 77 (91)
T cd05871 5 VVYGVENNSTFLECLPK---SPQASVKWLFQRGGDQRKEEVKTEERLIHTE----RGLLLRSLQRSDAGVYTCTAVEHSF 77 (91)
T ss_pred EEEEecCCcEEEEEECC---CCCceEEEEEECCCCCccccccccccEEEec----CeEEEeeCChhHCEEEEEEEEccCC
Confidence 35678999999999953 67889999983 322 12234554432 269999999999999999998 466
Q ss_pred eeEEEEEEEEEe
Q psy2166 148 GETFTSTTIYCS 159 (805)
Q Consensus 148 g~~~~~~~l~V~ 159 (805)
+.......|+|.
T Consensus 78 ~~~~~~~~l~v~ 89 (91)
T cd05871 78 SQTLAKYTLHVI 89 (91)
T ss_pred eEEEEEEEEEEe
Confidence 766677777764
No 217
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.91 E-value=4.5e-09 Score=85.01 Aligned_cols=73 Identities=11% Similarity=0.225 Sum_probs=55.2
Q ss_pred ccCCCCeEEEEEEE-eec--CCCCeEEEEEECCEEccCCCC-eEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEE
Q psy2166 703 NLSEGEIAHFEASL-IPV--GDQTMTVEFLYNGKPIEASHR-IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777 (805)
Q Consensus 703 ~v~~G~~~~l~C~~-~~~--g~p~~~v~W~~~g~~l~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 777 (805)
.+.+|....|.|.- ..+ .++.+.++||||++++....+ +....+.. .|.|.+|..+|+|.|+|+|.|.+|...
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~--~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGST--YLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCC--EEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 57789999999973 211 347789999999999875543 22222222 699999999999999999999987553
No 218
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.90 E-value=6.9e-09 Score=83.77 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=59.2
Q ss_pred CceecCCCcEEEEEEEec---------CCCCCceEEEEECCEecCCCCc-----eEEEecCcEEEEEEcccccCCCeEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEP---------KNDPNLKIEWIFNGKPLELGSR-----FKTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~---------~~~p~~~v~W~k~g~~i~~~~~-----~~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
...+.+|+++.|.|..-. .......+.|+|++..+..... .+++..+. .|.|.++..+|+|.|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYT 86 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEE
Confidence 357889999999999720 0133458999999755544321 23343333 7999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEE
Q psy2166 141 CRAWNLAGETFTSTTIYC 158 (805)
Q Consensus 141 C~a~n~~g~~~~~~~l~V 158 (805)
|+++|.......+..|+|
T Consensus 87 C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 87 CVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEECCCCcceEEEEEEEC
Confidence 999998877777766654
No 219
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.88 E-value=9.8e-09 Score=82.90 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=61.0
Q ss_pred ccCCCCeEEEEEEEee---------cCCCCeEEEEEECCEEccCCCC-----eEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIP---------VGDQTMTVEFLYNGKPIEASHR-----IRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~---------~g~p~~~v~W~~~g~~l~~~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+.+|+++.|.|...- ...+...+.|+|++..+..... .++...+. .|.|.++..+|+|.|+|+
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTCV 88 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEEE
Confidence 7899999999999710 0123458999999865554331 24444555 799999999999999999
Q ss_pred EEcCCccEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLEC 784 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V 784 (805)
+.|.-.-...++.|+|
T Consensus 89 ~rN~t~C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTYCMKVSMSLTV 104 (104)
T ss_pred ECCCCcceEEEEEEEC
Confidence 9999988888887765
No 220
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.85 E-value=8.5e-09 Score=83.39 Aligned_cols=72 Identities=15% Similarity=0.310 Sum_probs=54.9
Q ss_pred ccCCCeEEEEEEE-eeC--CCCCcEEEEEECCEEccCCC-ceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceE
Q psy2166 508 LKEGQSAHFEARL-TPV--TDPDLVVEWFYNGKKLPHGH-RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 581 (805)
Q Consensus 508 v~~G~~v~L~C~v-~~~--g~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 581 (805)
+.+|.+..|.|.- .++ ..+.++++|+||+++|.... ++....+ ...|.|.++..+|+|.|+|.|.+..|...
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~--~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG--STYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC--CCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 7789999999972 222 45777999999999997544 3332222 23599999999999999999999887653
No 221
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.85 E-value=1e-08 Score=79.61 Aligned_cols=64 Identities=9% Similarity=0.161 Sum_probs=50.7
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeC----CEEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF----GIVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
++|+|...+ ++|+++|+|+|||++|..... . ...+ ..+.|.|.....+|.+.|+|+|.|.++..
T Consensus 2 ~~L~C~s~~-skP~a~i~W~k~~~~l~~~~~-~-~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPR-SKPAATLRWYRDRKELKGVIS-Q-QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCC-ccCCCeEEEEECCEECCCCcc-c-ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 789999997 899999999999999964321 1 1111 23469999888999999999999998864
No 222
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.85 E-value=1.5e-08 Score=79.88 Aligned_cols=76 Identities=25% Similarity=0.394 Sum_probs=61.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
++.+|+.+.|.|... ++.+.+.|+++|..+..+.++....+ | |.|.++..+|+|.|.|.|. +.|-...-+.+
T Consensus 7 tv~~g~~v~L~C~~~---s~~A~v~W~~ng~~l~~~~r~~~~~~-G---LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y 78 (85)
T cd05872 7 TVAPGADVVLPCQLR---SNLASPVWLFNGTPLNAQFSYRVGTD-G---LLILVTSPEHSGTYRCYSE-EEGFQQLVASY 78 (85)
T ss_pred EEecCCCEEEECCCC---CCCccEEEEECCcccCCCcceEEeCC-C---CEEEECCHhhCEEEEEEEe-cCCCeEEEEEE
Confidence 899999999999996 46789999999999988777664443 3 7799999999999999976 66766666665
Q ss_pred EEEE
Q psy2166 783 ECVV 786 (805)
Q Consensus 783 ~V~~ 786 (805)
.+.+
T Consensus 79 ~l~v 82 (85)
T cd05872 79 SLNV 82 (85)
T ss_pred EEEE
Confidence 5544
No 223
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.84 E-value=1.3e-08 Score=76.98 Aligned_cols=63 Identities=35% Similarity=0.486 Sum_probs=50.8
Q ss_pred CCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 510 ~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
+|++++|.|.+. +.|.+.+.|++++..+.. ...... ....|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~--~~~~~~v~W~~~~~~~~~--~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAE--GDPVPNITWLKDGKPLPE--SNRLSA--SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCc--cCCCCeEEEEECCEECCC--CCEEec--CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 589999999987 678889999999998872 222222 234699999999999999999999765
No 224
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.82 E-value=5.6e-08 Score=78.38 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=66.1
Q ss_pred cccccCCCeEEEEEEEeeCCCCCcE-EEEEECCEEccCCCceEEEeeC-----CEEEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 505 VTQLKEGQSAHFEARLTPVTDPDLV-VEWFYNGKKLPHGHRYRTFHDF-----GIVILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 505 ~~~v~~G~~v~L~C~v~~~g~p~~~-v~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
...+.+|+.+.|.|.+.+ .|.|+ +.|.+++..+.......+.... -.+.|.|.++..+|+|.|+|.|.|..+
T Consensus 12 ~~~v~~gE~~~L~V~ieA--YP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 12 TIFVNAGENLDLIVEYEA--YPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred eEEEECCCCEEEEEEEEe--CCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 345899999999999995 57777 9999999887543331222111 246899999999999999999999999
Q ss_pred ceEEEEEEEEe
Q psy2166 579 SDVTKASLKCV 589 (805)
Q Consensus 579 ~~~~~~~l~V~ 589 (805)
..+.++.|.|.
T Consensus 90 ~~s~tF~l~v~ 100 (101)
T cd05860 90 SASVTFNVYVN 100 (101)
T ss_pred eEEEEEEEEEe
Confidence 99999998875
No 225
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.82 E-value=4.2e-08 Score=78.54 Aligned_cols=78 Identities=31% Similarity=0.504 Sum_probs=58.2
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
|.+..+. ..+.+|+.++|.|.+. +.|...+.|++++..+..+.. .|.|.++..+|+|.|+|.+.+
T Consensus 2 P~l~~~~---~~v~~g~~~~l~C~~~--~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~ 66 (80)
T PF13895_consen 2 PVLSSSP---QSVEEGDSVTLTCSVS--GNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASN 66 (80)
T ss_dssp -EEEEES---SEEETTSEEEEEEEEE--SSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEE
T ss_pred cEEEccc---eEEeCCCcEEEEEEEE--cccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEe
Confidence 4544333 4789999999999998 688889999999877763221 277889999999999999999
Q ss_pred CCe-eEEEEEEEEE
Q psy2166 146 LAG-ETFTSTTIYC 158 (805)
Q Consensus 146 ~~g-~~~~~~~l~V 158 (805)
..+ .......|+|
T Consensus 67 ~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 67 GSGSNTSTSVNVTV 80 (80)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCCeEeeeEEeeC
Confidence 654 3344455543
No 226
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.82 E-value=4.9e-08 Score=79.12 Aligned_cols=67 Identities=16% Similarity=0.340 Sum_probs=54.0
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEc--------cCCCCeEEEe-eCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--------EASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
++.+|++++|.|.+. +.....+.|++-|..+ ..+.|+.... ++...+|+|.++..+|+|.|.|.+..
T Consensus 8 tv~~G~ta~L~C~v~--~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 8 TVVEGEVAIISCRVK--NNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred EEcCCCcEEEEEEEc--cCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 899999999999998 6656678887755322 3567777665 56678999999999999999999865
No 227
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.82 E-value=2e-08 Score=80.58 Aligned_cols=73 Identities=11% Similarity=0.182 Sum_probs=52.1
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-EeeCc----EEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
++|.|.+.+ +.|.+.|+|+|+|+++........ ..+++ .+.|.|.....+|.|.|+|.|.|..-.....+.++
T Consensus 2 ~~L~C~v~g-~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 2 YNLTCRARG-AKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred EEEEEEEeC-ccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 689999982 379899999999998865432111 22222 24688988889999999999999875444443333
No 228
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.81 E-value=2.9e-08 Score=78.30 Aligned_cols=64 Identities=20% Similarity=0.348 Sum_probs=56.0
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
...|..|+.+.|+|... .+.+.+.|++||..+..+.++....++ |.|.+++.+|+|.|.|.+.-
T Consensus 5 ~~tv~~g~~v~L~C~~~---s~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 5 NRTVAPGADVVLPCQLR---SNLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred EEEEecCCCEEEECCCC---CCCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEec
Confidence 46889999999999987 456799999999999888888777765 78999999999999999863
No 229
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.81 E-value=1.5e-08 Score=76.94 Aligned_cols=61 Identities=26% Similarity=0.457 Sum_probs=48.4
Q ss_pred CCcEEEEEEE-ecCCCCCceEEEEECCEecCCCCceEEEecCcE--EEEEEcccccCCCeEEEEEE
Q psy2166 81 AQPLHLEAQV-EPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF--VTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 81 G~~v~L~C~~-~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a 143 (805)
|+.++|.|.+ . +.+...|.|+|++..+.............. ..|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSS--GPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEE--SSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCC--CCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 8899999999 4 588889999999987766554444433321 13999999999999999986
No 230
>PHA03376 BARF1; Provisional
Probab=98.80 E-value=9.5e-08 Score=83.99 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=56.9
Q ss_pred CceecCCCcEEEEEEEecC-CCCCceEEEEECC----Eec-------------CCCCceEEEecCcEEEEEEcccccCCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPK-NDPNLKIEWIFNG----KPL-------------ELGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~k~g----~~i-------------~~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
.+.+..|+.++|+|..... ..+...|.|+|++ ..+ ....++.+..+.++.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 3567899999999998733 3467789999942 111 223456666667899999999999999
Q ss_pred eEEEEEEEeCCee
Q psy2166 137 GIYTCRAWNLAGE 149 (805)
Q Consensus 137 G~Y~C~a~n~~g~ 149 (805)
|.|+|........
T Consensus 100 GtY~C~fQkge~~ 112 (221)
T PHA03376 100 GNYLCRMKLGETE 112 (221)
T ss_pred ceEEEEEEcCCCc
Confidence 9999999876433
No 231
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.76 E-value=3.3e-08 Score=80.75 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=56.4
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
+|.|...+.. .|.+|+.|+|.|.. ..+...+.|+|+|...... . .........|.|.+|+.+|+|.|+|.+.
T Consensus 2 kP~L~a~p~~--vV~~G~~VtL~C~~---~~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~ 73 (91)
T cd05751 2 KPSLWAEPSS--VVPLGKPVTLRCQG---PYGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYR 73 (91)
T ss_pred CCEEEecCCC--ccCCCCcEEEEEec---CCCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEE
Confidence 4666666653 58999999999987 4677899999999854421 1 1122334579999999999999999999
Q ss_pred cC
Q psy2166 771 NK 772 (805)
Q Consensus 771 N~ 772 (805)
|.
T Consensus 74 ~~ 75 (91)
T cd05751 74 SG 75 (91)
T ss_pred CC
Confidence 96
No 232
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.72 E-value=7.6e-08 Score=77.15 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=51.6
Q ss_pred eEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE-EEeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 513 SAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFHDFG----IVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 513 ~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
.++|+|.+.+ +.|.+.++|+|+|+++....... ...+++ .+.|.|.....+|.|.|+|.|.|........+.+
T Consensus 1 ~~~L~C~v~g-~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~ 78 (82)
T cd05759 1 PYNLTCRARG-AKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSV 78 (82)
T ss_pred CEEEEEEEeC-ccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEE
Confidence 3689999995 47888999999999986542211 112222 3468888877788999999999977554444433
No 233
>PHA03376 BARF1; Provisional
Probab=98.71 E-value=2.8e-07 Score=81.14 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=82.5
Q ss_pred ccCCCceEEEEEEEee-CCCCCeEEEEEECCE----E-------------ccCCCcEEEEEEcCeEEEEEcCCCCcccEE
Q psy2166 214 NLSEGEIAHFEASLIP-VGDQTMTVEFLYNGK----P-------------IEASHRIRTVHAFGMVVLEILGTKIEDTGV 275 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~-~~~p~~~i~W~k~g~----~-------------l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 275 (805)
....|+.+.|.|...+ ...+...|.|+|.+. . .....++.+..+.++.+|.|.+++.+|.|.
T Consensus 22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGt 101 (221)
T PHA03376 22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN 101 (221)
T ss_pred hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCce
Confidence 3678999999998752 233668999999421 1 111223344445688999999999999999
Q ss_pred EEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECC
Q psy2166 276 YTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNG 344 (805)
Q Consensus 276 Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g 344 (805)
|+|.+..........-.++++ .|..+........ ...-+..++.|... +.|.|.++|..+.
T Consensus 102 Y~C~fQkge~~~~k~ehLt~V-----~~~~Lsv~a~~~d-Fp~~~~~~i~C~sg--gfP~P~~~Wle~~ 162 (221)
T PHA03376 102 YLCRMKLGETEVTKQEHLSVV-----KPLTLSVHSERSQ-FPDFSVLTVTCTVN--AFPHPHVQWLMPE 162 (221)
T ss_pred EEEEEEcCCCceeeeeeeeee-----ecceEEEEecccc-CCCCCeeEEEEecC--CcCCchheecccc
Confidence 999999765544444444443 3333443332222 33366789999953 9999999998753
No 234
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.67 E-value=3.6e-08 Score=77.76 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=49.9
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCC-CeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p-~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
||.|...+... ....+. ++|.|.+. +.| .+.++|+ +......... .........|.|.++..+|.|.|+|.|
T Consensus 1 kP~I~~~~~~~-~~~~~~-~~l~C~~~--~~~~~~~~~W~-~~~~~~~~~~--~~~~~~~~~L~i~~v~~~~~g~y~C~a 73 (75)
T PF13927_consen 1 KPQISVPPPPV-VTSGGS-VTLTCSAE--GGPPPPSISWY-DSNPSFNSNS--RGSSSSNSTLTISNVTRSDNGTYTCIA 73 (75)
T ss_dssp ESEEEEESTSE-EETTEE-EEEEEEES--SEESSEEEEEE-TEEEEEEEEE--EEEEEEEEEEEESSCCGGGTEEEEEEE
T ss_pred CCEEEEcCCCc-Eeecee-EEEEEEEc--cccCCeEEEEE-ecCCceeeee--eeccceeeEEEEccCCHHhCcEEEEEE
Confidence 36666666655 333334 99999998 776 8999999 2111111111 122233457999999999999999999
Q ss_pred Ec
Q psy2166 770 TN 771 (805)
Q Consensus 770 ~N 771 (805)
.|
T Consensus 74 ~N 75 (75)
T PF13927_consen 74 SN 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 98
No 235
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.64 E-value=3.3e-07 Score=77.68 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=58.1
Q ss_pred CCCeEEEEEEEeecCCC------CeEEEEEECC-----E-Ec-c-CCCC------e--EEE---eeCcEEEEEEcCCCCC
Q psy2166 706 EGEIAHFEASLIPVGDQ------TMTVEFLYNG-----K-PI-E-ASHR------I--RTV---HAFGMVVLEILGTKIE 760 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p------~~~v~W~~~g-----~-~l-~-~~~~------~--~~~---~~~~~~~L~i~~v~~~ 760 (805)
.|+.|+|.|... ..+ .+.|.|+|.. . .+ . .+.. + +.. ...+...|+|.+++.+
T Consensus 1 ~G~~V~L~C~~~--~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~s 78 (106)
T cd05714 1 LGGNVTLPCRFH--LEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLE 78 (106)
T ss_pred CCCCEEEeEEeE--CCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHH
Confidence 489999999998 543 4699999962 1 11 0 1111 1 111 1245678999999999
Q ss_pred CCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 761 DTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 761 d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
|+|.|.|.+.|..+..+..++|.|+.
T Consensus 79 D~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 79 DSGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred HCEEEEEEEEcCCCceEEEEEEEEEE
Confidence 99999999999988889999999864
No 236
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.63 E-value=2.8e-07 Score=78.17 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=58.3
Q ss_pred CCCeEEEEEEEeecCCC------CeEEEEEECCE------E-c-c----------CCCCeEEEe-eCcEEEEEEcCCCCC
Q psy2166 706 EGEIAHFEASLIPVGDQ------TMTVEFLYNGK------P-I-E----------ASHRIRTVH-AFGMVVLEILGTKIE 760 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p------~~~v~W~~~g~------~-l-~----------~~~~~~~~~-~~~~~~L~i~~v~~~ 760 (805)
.|++|+|.|... ..| ...|.|+|... . + . -..|+.+.. ..+...|+|.+++.+
T Consensus 1 ~G~~vtL~C~~~--~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~ 78 (106)
T cd05877 1 RGGNVTLPCRYH--YEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLE 78 (106)
T ss_pred CCCcEEEEeEeE--CCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChH
Confidence 489999999987 543 35799999531 0 1 0 013443322 134568999999999
Q ss_pred CCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 761 DTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 761 d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
|+|.|.|.+.|..|..+..++|.|..
T Consensus 79 DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 79 DYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred HCEEEEEEEEecccceEEEEEEEEEE
Confidence 99999999999999999999888864
No 237
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.62 E-value=1.7e-07 Score=80.13 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=56.2
Q ss_pred CcccccCCCCeEEEEEEEeecCCCCeEEEEEECCE---Ec-----------cCCCCeEEEee--CcEEEEEEcCCCCCCC
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK---PI-----------EASHRIRTVHA--FGMVVLEILGTKIEDT 762 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~---~l-----------~~~~~~~~~~~--~~~~~L~i~~v~~~d~ 762 (805)
..+ .+.+|++++|.|.+. +.+...+.|+|... +. ....|+.+..+ .+.+.|+|.+++.+|+
T Consensus 6 ~~v-~~~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 6 QSL-SVQEGENVTLNCNYS--TSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred Cce-EEcCCCCEEEEEEEC--CCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 344 899999999999998 66888999998431 00 12356655443 3678999999999999
Q ss_pred EEEEEEEEcCCc
Q psy2166 763 GVYTCRATNKWG 774 (805)
Q Consensus 763 G~Y~C~a~N~~G 774 (805)
|.|.|.+.+..|
T Consensus 83 G~Y~C~~~~~~~ 94 (109)
T cd04983 83 AVYFCALSESGG 94 (109)
T ss_pred EEEEEEEecCCC
Confidence 999999998654
No 238
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.62 E-value=1.4e-07 Score=77.02 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=55.5
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
+|.+...+ ...|.+|++|+|.|... .+...+.|+|+|...... + ....+....|.|.+++.+|+|.|+|.+.
T Consensus 2 kP~L~a~p--~~vV~~G~~VtL~C~~~---~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~ 73 (91)
T cd05751 2 KPSLWAEP--SSVVPLGKPVTLRCQGP---YGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYR 73 (91)
T ss_pred CCEEEecC--CCccCCCCcEEEEEecC---CCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEE
Confidence 45555544 35789999999999875 667789999998754421 1 1122344579999999999999999998
Q ss_pred eC
Q psy2166 145 NL 146 (805)
Q Consensus 145 n~ 146 (805)
+.
T Consensus 74 ~~ 75 (91)
T cd05751 74 SG 75 (91)
T ss_pred CC
Confidence 86
No 239
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.60 E-value=2.3e-07 Score=79.32 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=57.0
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECCE--e-c-----------CCCCceEEEec--CcEEEEEEcccccCC
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGK--P-L-----------ELGSRFKTTAD--FGFVTLDLTEVYDRD 135 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~--~-i-----------~~~~~~~~~~~--~~~~~L~I~~~~~~D 135 (805)
.+..+.+.+|++|+|.|.+. +.+...+.|+|... . . ...+|+.+..+ .+.++|.|.+++.+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYS--TSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred cCCceEEcCCCCEEEEEEEC--CCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 44467899999999999998 44777999998431 1 0 13357766543 378899999999999
Q ss_pred CeEEEEEEEeCC
Q psy2166 136 QGIYTCRAWNLA 147 (805)
Q Consensus 136 ~G~Y~C~a~n~~ 147 (805)
+|.|.|.+.+..
T Consensus 82 sG~Y~C~~~~~~ 93 (109)
T cd04983 82 SAVYFCALSESG 93 (109)
T ss_pred CEEEEEEEecCC
Confidence 999999998754
No 240
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.59 E-value=5.5e-07 Score=70.16 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=55.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCCc-cEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKWG-QAEISVNLECV 785 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~ 785 (805)
+.|.|.+. .+.|.+.|+|+|+|+++...........++ .++|.|..-..||+..|+|+|.|+.= ..+.+..|.|.
T Consensus 2 ~~L~C~s~-gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAM-ASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEec-CCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 68999998 467999999999999997653322122222 46799988788888999999999753 34555566664
No 241
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.59 E-value=4.3e-07 Score=76.11 Aligned_cols=76 Identities=26% Similarity=0.329 Sum_probs=53.7
Q ss_pred CCeEEEEEEEeecCCCC---eEEEEEECC-----------EEccC------CCCeEEEe---eCcEEEEEEcCCCCCCCE
Q psy2166 707 GEIAHFEASLIPVGDQT---MTVEFLYNG-----------KPIEA------SHRIRTVH---AFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~---~~v~W~~~g-----------~~l~~------~~~~~~~~---~~~~~~L~i~~v~~~d~G 763 (805)
|++|+|.|... .... ..|.|+|.. ..... ..|+.+.. ..+..+|+|.+++.+|+|
T Consensus 1 G~~v~L~C~~~--~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G 78 (100)
T cd05713 1 GEDAELPCHLS--PKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEG 78 (100)
T ss_pred CCcEEEEeEEc--CCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCE
Confidence 78999999986 2221 368888743 11110 13444322 235678999999999999
Q ss_pred EEEEEEEcCCccEEEEEEEEE
Q psy2166 764 VYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 764 ~Y~C~a~N~~G~~~~~~~l~V 784 (805)
.|+|.+.|..|..+..+.|+|
T Consensus 79 ~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 79 LYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEEecCCcEEEEEEEEEE
Confidence 999999998888777777776
No 242
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.57 E-value=4.4e-07 Score=76.45 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=56.6
Q ss_pred CCCeEEEEEEEeecCCC----------CeEEEEEEC--CE---Ecc-----------CCCCeEEEe---eCcEEEEEEcC
Q psy2166 706 EGEIAHFEASLIPVGDQ----------TMTVEFLYN--GK---PIE-----------ASHRIRTVH---AFGMVVLEILG 756 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p----------~~~v~W~~~--g~---~l~-----------~~~~~~~~~---~~~~~~L~i~~ 756 (805)
.|++++|.|.......+ .+.|.|+|- |+ .+. -.+|+.+.. ..+...|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 48999999999721111 469999983 21 110 013555543 33567899999
Q ss_pred CCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 757 TKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 757 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
++.+|+|.|.|.+.+.....+..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999877777777777764
No 243
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.57 E-value=2.7e-07 Score=78.35 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=54.6
Q ss_pred ccCCCCeEEEEEEEeecCC-CCeEEEEEECCE-----Ec------------cCCCCeEEEeeC--cEEEEEEcCCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGD-QTMTVEFLYNGK-----PI------------EASHRIRTVHAF--GMVVLEILGTKIEDT 762 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~-p~~~v~W~~~g~-----~l------------~~~~~~~~~~~~--~~~~L~i~~v~~~d~ 762 (805)
.+.+|++++|.|.+. +. +...+.|+|... .+ ....|+.+..+. +.+.|+|.+++.+|+
T Consensus 2 ~v~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 2 SVSEGESVTLSCTYS--GSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS 79 (105)
T ss_pred eecCCCCEEEEEEEe--CCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence 688999999999998 65 778999998432 11 123455555444 678999999999999
Q ss_pred EEEEEEEEcCCc
Q psy2166 763 GVYTCRATNKWG 774 (805)
Q Consensus 763 G~Y~C~a~N~~G 774 (805)
|.|.|.+.+..+
T Consensus 80 G~Y~C~v~~~~~ 91 (105)
T cd00099 80 AVYYCAVSLSGG 91 (105)
T ss_pred EEEEEEEecCCC
Confidence 999999998775
No 244
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.56 E-value=4.6e-07 Score=75.31 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=53.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEc--------c-----------CCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--------E-----------ASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l--------~-----------~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
.+.+|+.+.|.|.-. ..+...++|+|..... . .++|..+..++ +|.|.+++.+|+|
T Consensus 9 ~~~~G~~V~L~v~~~--p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G 83 (105)
T cd05774 9 QVAEGENVLLLVHNL--PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTG 83 (105)
T ss_pred cccCCCCEEEEecCC--CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCE
Confidence 789999999999843 2333499999963110 0 12344433333 6999999999999
Q ss_pred EEEEEEEcCCc-cEEEEEEEEE
Q psy2166 764 VYTCRATNKWG-QAEISVNLEC 784 (805)
Q Consensus 764 ~Y~C~a~N~~G-~~~~~~~l~V 784 (805)
.|+|.+.|..+ .....++|.|
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEEC
Confidence 99999999873 5555555543
No 245
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.56 E-value=5.1e-07 Score=76.69 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=56.6
Q ss_pred ccCCCCeEEEEEEEeecC--CCCeEEEEE---------------ECCEEcc-CC----CCeEEEe--eCcEEEEEEcCCC
Q psy2166 703 NLSEGEIAHFEASLIPVG--DQTMTVEFL---------------YNGKPIE-AS----HRIRTVH--AFGMVVLEILGTK 758 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g--~p~~~v~W~---------------~~g~~l~-~~----~~~~~~~--~~~~~~L~i~~v~ 758 (805)
.+..|+.++|.|..+... .+...|+|. ++|+... .. +|+.+.. ..+..+|.|.+++
T Consensus 9 ~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~ 88 (116)
T cd05879 9 YGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLD 88 (116)
T ss_pred EEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCC
Confidence 789999999999998221 245699993 3555443 11 3554432 2456789999999
Q ss_pred CCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 759 IEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
.+|.|.|+|.+.|.-+......++.
T Consensus 89 ~sD~G~Y~C~v~n~p~~~~~~~~~~ 113 (116)
T cd05879 89 YTDNGTFTCDVKNPPDIVGKSSQVT 113 (116)
T ss_pred cccCEEEEEEEEcCCCcCCceeEEE
Confidence 9999999999999876443334333
No 246
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.51 E-value=8.2e-07 Score=73.82 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=55.1
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEECCE-----ec--------------CCCCceEEEecCcEEEEEEcccccCCC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGK-----PL--------------ELGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~-----~i--------------~~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
..+.+|++++|.|... +.....+.|+|... .| ...+|..+..++ +|.|.+++.+|+
T Consensus 8 ~~~~~G~~V~L~v~~~--p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~ 82 (105)
T cd05774 8 PQVAEGENVLLLVHNL--PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDT 82 (105)
T ss_pred CcccCCCCEEEEecCC--CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccC
Confidence 3788999999999865 45666999999521 11 023455666555 899999999999
Q ss_pred eEEEEEEEeCC-eeEEEEEEE
Q psy2166 137 GIYTCRAWNLA-GETFTSTTI 156 (805)
Q Consensus 137 G~Y~C~a~n~~-g~~~~~~~l 156 (805)
|.|.|.+.+.. ...+....+
T Consensus 83 G~Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 83 GFYTLQTITTNFQVEQATVHL 103 (105)
T ss_pred EEEEEEEEeCCccEEEEEEEE
Confidence 99999999876 334444444
No 247
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.50 E-value=4.7e-07 Score=77.30 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=54.6
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECC--EecC----------------CCCceEEEecC-cEEEEEEcccc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KPLE----------------LGSRFKTTADF-GFVTLDLTEVY 132 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~i~----------------~~~~~~~~~~~-~~~~L~I~~~~ 132 (805)
.+..+.+.+|++++|.|.+. + +...+.|||.. +.+. ..+|+.+..+. ..++|.|.+++
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~--~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~ 80 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQT--S-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE 80 (110)
T ss_pred CCCceEEcCCCcEEEEEEEC--C-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence 34467899999999999998 3 56789999943 1110 13466665543 56799999999
Q ss_pred cCCCeEEEEEEEeC
Q psy2166 133 DRDQGIYTCRAWNL 146 (805)
Q Consensus 133 ~~D~G~Y~C~a~n~ 146 (805)
.+|+|.|.|.+.+.
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999999765
No 248
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.50 E-value=9.8e-07 Score=74.80 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=56.5
Q ss_pred CCCcEEEEEEEecCC----CCCceEEEEECCE----e----cC----------CCCceEEEec-CcEEEEEEcccccCCC
Q psy2166 80 EAQPLHLEAQVEPKN----DPNLKIEWIFNGK----P----LE----------LGSRFKTTAD-FGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 80 ~G~~v~L~C~~~~~~----~p~~~v~W~k~g~----~----i~----------~~~~~~~~~~-~~~~~L~I~~~~~~D~ 136 (805)
.|++|+|+|...... .....|.|+|... . +. ...|+.+... .+..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987321 2356799999531 0 11 1235554322 3456899999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 137 GIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
|.|+|.+.+..+.......|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999987777777777664
No 249
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.49 E-value=1.6e-06 Score=72.43 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=54.0
Q ss_pred CeEEEEEEEeecCCC---CeEEEEEECCEE---------------ccC--CCCeEEEeeC-cEEEEEEcCCCCCCCEEEE
Q psy2166 708 EIAHFEASLIPVGDQ---TMTVEFLYNGKP---------------IEA--SHRIRTVHAF-GMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p---~~~v~W~~~g~~---------------l~~--~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~ 766 (805)
++|+|.|... ..+ ...|.|+|.... +.+ ..|+.+..+. +...|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~--~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~ 78 (98)
T cd05718 1 ESVTLECSFP--VPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYI 78 (98)
T ss_pred CCEEEEeEee--CCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEE
Confidence 4799999998 443 457999995421 111 1222222211 4578999999999999999
Q ss_pred EEEEc-CCccEEEEEEEEEE
Q psy2166 767 CRATN-KWGQAEISVNLECV 785 (805)
Q Consensus 767 C~a~N-~~G~~~~~~~l~V~ 785 (805)
|.+.+ +.|.....+.|+|.
T Consensus 79 C~v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 79 CEFATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEEEeCCCCcEEEEEEEEeC
Confidence 99975 77899998888873
No 250
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.49 E-value=1.3e-06 Score=73.17 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=53.2
Q ss_pred CCcEEEEEEEecC-CCCCceEEEEECC--Eec---------C------CCCceEEEe---cCcEEEEEEcccccCCCeEE
Q psy2166 81 AQPLHLEAQVEPK-NDPNLKIEWIFNG--KPL---------E------LGSRFKTTA---DFGFVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 81 G~~v~L~C~~~~~-~~p~~~v~W~k~g--~~i---------~------~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y 139 (805)
|++|+|+|..... ......|.|+|.. ..+ . ..+|+.+.. ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7899999998632 1223468888743 111 1 113444432 23567899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEE
Q psy2166 140 TCRAWNLAGETFTSTTIYC 158 (805)
Q Consensus 140 ~C~a~n~~g~~~~~~~l~V 158 (805)
+|.+.+..+..+....|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776666666665
No 251
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.48 E-value=1.5e-06 Score=73.63 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=57.4
Q ss_pred CCCeEEEEEEEeecCCC----------CeEEEEEEC--CEE---c--------cC---CCCeEEE---eeCcEEEEEEcC
Q psy2166 706 EGEIAHFEASLIPVGDQ----------TMTVEFLYN--GKP---I--------EA---SHRIRTV---HAFGMVVLEILG 756 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p----------~~~v~W~~~--g~~---l--------~~---~~~~~~~---~~~~~~~L~i~~ 756 (805)
.|+.++|.|... ..+ ...|.|+|. ++. + .. .+|+.+. .+.+...|+|.+
T Consensus 1 ~G~~V~LpC~~~--~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~ 78 (110)
T cd05878 1 LSSSVLLPCYFT--LPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISR 78 (110)
T ss_pred CCCCEEEeeEee--CCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECC
Confidence 489999999997 433 367999984 211 0 00 1243332 224567899999
Q ss_pred CCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 757 TKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 757 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
++.+|+|.|.|.+....+..+..++|.|..
T Consensus 79 l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 79 LRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred CChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999999999877888888888864
No 252
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.48 E-value=6.2e-07 Score=76.08 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=54.0
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEECCE-----ec------------CCCCceEEEecC--cEEEEEEcccccCCCe
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGK-----PL------------ELGSRFKTTADF--GFVTLDLTEVYDRDQG 137 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~-----~i------------~~~~~~~~~~~~--~~~~L~I~~~~~~D~G 137 (805)
.+.+|++++|.|.+... .+...+.|+|... .+ ...+|+.+..+. +.++|+|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~-~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGS-FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCC-cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 57899999999999832 2677899998422 11 123466665554 6789999999999999
Q ss_pred EEEEEEEeCCe
Q psy2166 138 IYTCRAWNLAG 148 (805)
Q Consensus 138 ~Y~C~a~n~~g 148 (805)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987654
No 253
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.48 E-value=5.6e-07 Score=76.83 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=52.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECC--EEcc----------------CCCCeEEEeeC-cEEEEEEcCCCCCCCE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNG--KPIE----------------ASHRIRTVHAF-GMVVLEILGTKIEDTG 763 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g--~~l~----------------~~~~~~~~~~~-~~~~L~i~~v~~~d~G 763 (805)
.+.+|++++|.|.+. + +...+.|||.. +.+. ...++.+..+. ..+.|.|.+++.+|+|
T Consensus 9 ~v~~G~~v~l~C~~~--~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg 85 (110)
T cd05899 9 IKGRGQSVTLRCSQT--S-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA 85 (110)
T ss_pred EEcCCCcEEEEEEEC--C-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence 899999999999998 6 77899999842 1110 12455544333 5678999999999999
Q ss_pred EEEEEEEcCCc
Q psy2166 764 VYTCRATNKWG 774 (805)
Q Consensus 764 ~Y~C~a~N~~G 774 (805)
.|.|.+.+..|
T Consensus 86 ~Y~Ca~~~~~~ 96 (110)
T cd05899 86 VYLCASSLGGG 96 (110)
T ss_pred EEEEEeeCCCC
Confidence 99999988643
No 254
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.47 E-value=8.4e-07 Score=75.13 Aligned_cols=74 Identities=15% Similarity=0.288 Sum_probs=54.8
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCC-CceEEEEECC--Ee---c---------CCCCceEEEecCcEEEEEEcccccCC
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDP-NLKIEWIFNG--KP---L---------ELGSRFKTTADFGFVTLDLTEVYDRD 135 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~k~g--~~---i---------~~~~~~~~~~~~~~~~L~I~~~~~~D 135 (805)
..+..+.+.+|++|+|.|.+.. .. ...+.|||.. +. + ....|+.....+..+.|+|.+++.+|
T Consensus 5 Q~p~~~~v~~G~~v~L~C~~~~--~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 5 QSPATLSVSPGESATISCKASQ--SVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred ECCCcEEECCCCCEEEEEEECC--CCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 3444678999999999999873 33 5679999832 11 1 01246776666677889999999999
Q ss_pred CeEEEEEEEeC
Q psy2166 136 QGIYTCRAWNL 146 (805)
Q Consensus 136 ~G~Y~C~a~n~ 146 (805)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998653
No 255
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.45 E-value=9.1e-07 Score=74.93 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=52.0
Q ss_pred ccCCCCeEEEEEEEeecCCC-CeEEEEEECC--E---Ecc---------CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ-TMTVEFLYNG--K---PIE---------ASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p-~~~v~W~~~g--~---~l~---------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
.+.+|++++|.|.+. +.. ...+.|+|.. + .+. ...++........+.|+|.+++.+|+|.|.|
T Consensus 11 ~v~~G~~v~L~C~~~--~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C 88 (106)
T cd04980 11 SVSPGESATISCKAS--QSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC 88 (106)
T ss_pred EECCCCCEEEEEEEC--CCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence 889999999999997 555 5789999832 1 111 1235655555667889999999999999999
Q ss_pred EEEcC
Q psy2166 768 RATNK 772 (805)
Q Consensus 768 ~a~N~ 772 (805)
.+.|.
T Consensus 89 a~~~~ 93 (106)
T cd04980 89 QQYGT 93 (106)
T ss_pred EEeCC
Confidence 99764
No 256
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.45 E-value=1.9e-06 Score=73.29 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=54.2
Q ss_pred CCCceecCCCcEEEEEEEecCC--CCCceEEEEE---------------CCEecC-C----CCceEEEec--CcEEEEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKN--DPNLKIEWIF---------------NGKPLE-L----GSRFKTTAD--FGFVTLDL 128 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~--~p~~~v~W~k---------------~g~~i~-~----~~~~~~~~~--~~~~~L~I 128 (805)
++.+.+..|+.++|.|...... .+...|.|.+ +|+... . .+|+....+ .+..+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 3467889999999999998431 3567999933 444332 1 125544332 35568999
Q ss_pred cccccCCCeEEEEEEEeCCe
Q psy2166 129 TEVYDRDQGIYTCRAWNLAG 148 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~a~n~~g 148 (805)
.+++.+|.|.|+|.+.|..+
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred ccCCcccCEEEEEEEEcCCC
Confidence 99999999999999998754
No 257
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.44 E-value=2.3e-06 Score=66.68 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=52.4
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeC---CEEEEEEccCCCCCCEEEEEEEEcCCcc-eEEEEEEEEe
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF---GIVILDILYCYEENSGVYECRATNKYGS-DVTKASLKCV 589 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~ 589 (805)
+.|.|.+.+ ++|.+.|+|+|+|+++............ ..++|.|..-..+|...|+|.|.|..-. ......|.|.
T Consensus 2 ~~L~C~s~g-SkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMA-SKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecC-CCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999998 7999999999999999764322111111 2557888765556666999999986532 3444555554
No 258
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.44 E-value=1.1e-06 Score=75.97 Aligned_cols=73 Identities=19% Similarity=0.407 Sum_probs=55.6
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec-----------------CCCCceEEEecC--cEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL-----------------ELGSRFKTTADF--GFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i-----------------~~~~~~~~~~~~--~~~~L~I~~~ 131 (805)
+..+.+.+|++|+|.|.+.....+.+.+.|||. |... ....|+.+..+. ..+.|+|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 445688899999999999732256778999994 2211 023577777665 6789999999
Q ss_pred ccCCCeEEEEEEEe
Q psy2166 132 YDRDQGIYTCRAWN 145 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n 145 (805)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999964
No 259
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.44 E-value=1.2e-06 Score=71.46 Aligned_cols=72 Identities=7% Similarity=0.020 Sum_probs=52.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeE--EEEEECCEEccCCCCeEE--EeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMT--VEFLYNGKPIEASHRIRT--VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~--v~W~~~g~~l~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
.+.+|+.++|.|.+. .+.|.+. |+|||+++.+........ .......+|.+..-+.||.-.|+|+|.+.++.
T Consensus 12 ~~~eG~~~tL~C~v~-g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVP-GVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEc-CcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 678999999999998 3678886 799999999865422110 11223457888766666666999999998764
No 260
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.41 E-value=2.4e-06 Score=72.40 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=55.5
Q ss_pred CCCcEEEEEEEecCC----CCCceEEEEECC-----E-ec--CCCC----------ceEE-EecCcEEEEEEcccccCCC
Q psy2166 80 EAQPLHLEAQVEPKN----DPNLKIEWIFNG-----K-PL--ELGS----------RFKT-TADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 80 ~G~~v~L~C~~~~~~----~p~~~v~W~k~g-----~-~i--~~~~----------~~~~-~~~~~~~~L~I~~~~~~D~ 136 (805)
.|++|+|+|...... ...+.|.|+|.. . .+ ..+. |+.. ....+..+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999988421 236799999962 1 11 0111 1111 1133567999999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 137 GIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
|.|.|.+.+..+.......|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEE
Confidence 99999999887766777777765
No 261
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.41 E-value=1.8e-06 Score=72.73 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=54.5
Q ss_pred CCCcEEEEEEEecCCCC----------CceEEEEEC--CEec--------------CCCCceEEEe---cCcEEEEEEcc
Q psy2166 80 EAQPLHLEAQVEPKNDP----------NLKIEWIFN--GKPL--------------ELGSRFKTTA---DFGFVTLDLTE 130 (805)
Q Consensus 80 ~G~~v~L~C~~~~~~~p----------~~~v~W~k~--g~~i--------------~~~~~~~~~~---~~~~~~L~I~~ 130 (805)
.|++|+|+|.......+ .+.|.|+|- |++. ...+|+.+.. ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 48999999999842111 468999983 2111 1113666644 33567999999
Q ss_pred cccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 131 VYDRDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
++.+|+|.|+|.+.+..........|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999765455555555553
No 262
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.41 E-value=2.2e-06 Score=72.62 Aligned_cols=80 Identities=14% Similarity=0.256 Sum_probs=55.7
Q ss_pred CCCcEEEEEEEecCCCC--------CceEEEEEC--CEecC--------------CCCceEEE---ecCcEEEEEEcccc
Q psy2166 80 EAQPLHLEAQVEPKNDP--------NLKIEWIFN--GKPLE--------------LGSRFKTT---ADFGFVTLDLTEVY 132 (805)
Q Consensus 80 ~G~~v~L~C~~~~~~~p--------~~~v~W~k~--g~~i~--------------~~~~~~~~---~~~~~~~L~I~~~~ 132 (805)
.|++|+|+|.......+ ...|.|+|. ++... ..+|+.+. .+.+..+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 38999999999843111 367999984 21110 11355543 23456789999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 133 DRDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 133 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
.+|+|.|.|.+.......+....|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999999876566666667664
No 263
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.40 E-value=1.5e-06 Score=72.35 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=52.7
Q ss_pred ccCCCCeEEEEEEEeecCC--CCeEEEEEECC--EEc------------cCCCCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGD--QTMTVEFLYNG--KPI------------EASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~--p~~~v~W~~~g--~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+.+|++++|.|.+. +. ....+.|||-. ..+ ....++....+.+...|+|.+++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~--~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGS--SGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEEc--CCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEE
Confidence 688999999999987 54 55679999822 111 1134677667777889999999999999999
Q ss_pred EEEEcC
Q psy2166 767 CRATNK 772 (805)
Q Consensus 767 C~a~N~ 772 (805)
|.+.+.
T Consensus 80 C~~~~~ 85 (98)
T cd04984 80 CQVWDS 85 (98)
T ss_pred EEEccC
Confidence 999764
No 264
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.40 E-value=1.5e-06 Score=72.35 Aligned_cols=70 Identities=14% Similarity=0.342 Sum_probs=52.6
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
.|.+|++|+|.|...........+.|||- |+.. ....|+....++..++|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 57899999999998732114567999983 2111 113478877777888999999999999999999
Q ss_pred EEeC
Q psy2166 143 AWNL 146 (805)
Q Consensus 143 a~n~ 146 (805)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8653
No 265
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.40 E-value=1.3e-06 Score=71.59 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=51.3
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
|.|...+.. .|.+|++|+|.|... - +...+.|+|+|...................+.|.+++.+|+|.|.|...
T Consensus 2 P~l~a~p~~--vV~~G~~VTL~C~~~--~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHPSP--VVPSGENVTLQCHSD--I-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecCCC--ccCCCCeEEEEEecC--C-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 455555543 589999999999875 3 5568999999875332100001112234579999999999999999975
No 266
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.39 E-value=2.2e-06 Score=68.37 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=47.2
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEE-eeCc----EEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV-HAFG----MVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
+.|.|.+. .++|.+.|+|+++|+++.... .... .+++ .+.|.+.....+|.+.|+|+|.|....
T Consensus 2 ~~L~C~~~-~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSS-GSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEec-CcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 68999998 356999999999999987543 2222 1222 245777666777888999999998764
No 267
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.39 E-value=1.5e-06 Score=71.61 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=51.2
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccC------------------CCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEA------------------SHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~------------------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
|++|+|.|.+. ..+...|.|+|+...... ..|+.+..+ ..|+|.+++.+|+|.|+|.
T Consensus 1 G~~VtL~c~~~--~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNL--PENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccC--CCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEE
Confidence 78999999987 667789999996532110 122333222 4799999999999999999
Q ss_pred EEcCCc-cEEEEEEEE
Q psy2166 769 ATNKWG-QAEISVNLE 783 (805)
Q Consensus 769 a~N~~G-~~~~~~~l~ 783 (805)
+.+..| .....+.|.
T Consensus 76 v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 76 IISTNGVTENAKFFLR 91 (92)
T ss_pred EEcCCCcEEEEEEEEE
Confidence 998875 444444444
No 268
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.39 E-value=1.6e-06 Score=71.68 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=54.2
Q ss_pred CCCCeEEEEEEEeecC-CCCeEEEEEECCEEcc--C-----------CCCe--EEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 705 SEGEIAHFEASLIPVG-DQTMTVEFLYNGKPIE--A-----------SHRI--RTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g-~p~~~v~W~~~g~~l~--~-----------~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
..|++|+|.|... . .....|.|+|....+. . ..++ +..-+.....|+|.+++.+|+|.|.|.
T Consensus 2 ~~G~sVtL~c~~~--~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~ 79 (97)
T cd05775 2 ILGGSVTLPLNIP--DGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAE 79 (97)
T ss_pred ccCCeEEEeCCCC--CCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEE
Confidence 4699999999986 3 4567899998653211 0 1111 122234456899999999999999999
Q ss_pred EEcCCccE-EEEEEEEE
Q psy2166 769 ATNKWGQA-EISVNLEC 784 (805)
Q Consensus 769 a~N~~G~~-~~~~~l~V 784 (805)
+.+..|.. ...+.|.|
T Consensus 80 v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 80 INTKNGVTITKEFTLHI 96 (97)
T ss_pred EEcCCCCeEEEEEEEEe
Confidence 99988744 55555655
No 269
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.38 E-value=3.7e-06 Score=69.97 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=52.7
Q ss_pred eEEEEEEEeecCCC---CeEEEEEEC--CE---Ec---c--------C--CCCeEEEe--eCcEEEEEEcCCCCCCCEEE
Q psy2166 709 IAHFEASLIPVGDQ---TMTVEFLYN--GK---PI---E--------A--SHRIRTVH--AFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 709 ~~~l~C~~~~~g~p---~~~v~W~~~--g~---~l---~--------~--~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y 765 (805)
+++|.|... ..+ ...|.|+|. |. .+ . . .+|..+.. ..+...|+|.+++.+|+|.|
T Consensus 2 ~v~L~C~~~--~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY 79 (100)
T cd05888 2 DTRLPCRYN--VSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKY 79 (100)
T ss_pred CEEEEeEEe--cCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEE
Confidence 689999997 333 458999993 21 11 0 0 13555543 23456899999999999999
Q ss_pred EEEEEc-CCccEEEEEEEEE
Q psy2166 766 TCRATN-KWGQAEISVNLEC 784 (805)
Q Consensus 766 ~C~a~N-~~G~~~~~~~l~V 784 (805)
.|.+.| +.|..+..+.|+|
T Consensus 80 ~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 80 KCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEEeCCCCCeeeEEEEEe
Confidence 999999 7887777777776
No 270
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.37 E-value=4.6e-06 Score=64.62 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=56.7
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 154 (805)
+..+..|++++|+|.....+.|.+.|+|.-.+...-.. .. .+..+|.+.++...|+|.++|.+..........+
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~----~~--~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI----LN--QDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee----cc--CCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence 45788999999999997333556699999765442210 01 1223899999999999999999987655566666
Q ss_pred EEEEe
Q psy2166 155 TIYCS 159 (805)
Q Consensus 155 ~l~V~ 159 (805)
.|.|.
T Consensus 82 ~V~Vl 86 (88)
T cd07694 82 DIKVL 86 (88)
T ss_pred eEEEE
Confidence 66664
No 271
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.37 E-value=2.4e-06 Score=73.18 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=51.3
Q ss_pred CCCCceecCCCcEEEEEEEecCC-C-CCceEEEEEC----CEe--c---------CCCC----ceEEEe--cCcEEEEEE
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKN-D-PNLKIEWIFN----GKP--L---------ELGS----RFKTTA--DFGFVTLDL 128 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~-~-p~~~v~W~k~----g~~--i---------~~~~----~~~~~~--~~~~~~L~I 128 (805)
.+..+.+.+|++++|.|...... . ....|.|++. +.+ + ...+ |+.+.. ..+..+|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 45578999999999999987321 1 1346999751 111 1 0111 222221 234568999
Q ss_pred cccccCCCeEEEEEEEeCCe
Q psy2166 129 TEVYDRDQGIYTCRAWNLAG 148 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~a~n~~g 148 (805)
.+++.+|+|.|+|.+.|..+
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eeCChhhCEEEEEEEEeCCC
Confidence 99999999999999998644
No 272
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.35 E-value=2.2e-06 Score=70.33 Aligned_cols=75 Identities=11% Similarity=0.075 Sum_probs=51.4
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
|.+...+ ...|.+|++|+|.|... .....+.|+|+|...................+.|.+++.+|+|.|+|....
T Consensus 2 P~l~a~p--~~vV~~G~~VTL~C~~~---~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHP--SPVVPSGENVTLQCHSD---IRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecC--CCccCCCCeEEEEEecC---CCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 4444433 45789999999999876 345689999998653321000111122344789999999999999999854
No 273
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.35 E-value=3.8e-06 Score=70.09 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=52.5
Q ss_pred CcEEEEEEEecCC-CCCceEEEEECCEe----c-----------CC--CCceEEEecC-cEEEEEEcccccCCCeEEEEE
Q psy2166 82 QPLHLEAQVEPKN-DPNLKIEWIFNGKP----L-----------EL--GSRFKTTADF-GFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 82 ~~v~L~C~~~~~~-~p~~~v~W~k~g~~----i-----------~~--~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
++|+|+|.....+ .....|.|+|.... + .. ..|..+..+. +..+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999998422 13457999995421 0 11 1232222211 456899999999999999999
Q ss_pred EEe-CCeeEEEEEEEEE
Q psy2166 143 AWN-LAGETFTSTTIYC 158 (805)
Q Consensus 143 a~n-~~g~~~~~~~l~V 158 (805)
+.. ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 5677887777776
No 274
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.33 E-value=2.2e-06 Score=73.99 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=53.1
Q ss_pred ccCCCCeEEEEEEEeecC--CCCeEEEEEEC--CEEc-----------------cCCCCeEEEeeC--cEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVG--DQTMTVEFLYN--GKPI-----------------EASHRIRTVHAF--GMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g--~p~~~v~W~~~--g~~l-----------------~~~~~~~~~~~~--~~~~L~i~~v~~ 759 (805)
.+.+|++++|.|.+. + .+.+.+.|+|. |..+ ....++.+..+. ..+.|+|.+++.
T Consensus 9 ~~~~G~~v~l~C~~~--~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 9 TREESKSVTISCKVS--GIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred EeCCCCCEEEEEEEe--CCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 789999999999997 6 67889999993 2110 013566666665 678999999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|+|.|.|.+..
T Consensus 87 ~Dsg~Y~C~~~~ 98 (116)
T cd04982 87 EDSATYYCAYWE 98 (116)
T ss_pred HHCEEEEEEEec
Confidence 999999999875
No 275
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.33 E-value=3.2e-06 Score=75.47 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=64.5
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecC----------C--CCceE-EEecCcEEEEEEcccccCCCeEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE----------L--GSRFK-TTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~----------~--~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
.++|.+|++|+|.|... .+...+.|+|+|....+. + .+|+. +......++|+|.+++.+|+|.|.|
T Consensus 24 ~v~V~ege~VtLsCs~t-~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 24 KITVSEHVNVKISCNKT-SSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEcCCCCEEEEEecC-CCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 46889999999999984 245677899999643221 1 13554 4444456789999999999999999
Q ss_pred EEE-eCCe-eEEEEEEEEEeccc
Q psy2166 142 RAW-NLAG-ETFTSTTIYCSTKE 162 (805)
Q Consensus 142 ~a~-n~~g-~~~~~~~l~V~~~~ 162 (805)
... ...| ..+....|+|....
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEecCCCCCceeEEEEEEEchh
Confidence 985 4456 77888889987643
No 276
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.33 E-value=4.6e-06 Score=66.44 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=47.4
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEe-eCc----EEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH-AFG----MVVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
++|.|.+. .++|.+.|+|++||+++.......... +++ .+.|.|.....+|...|+|.|.|...
T Consensus 2 ~~LtC~a~-g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSS-GSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEec-CccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 68999998 356999999999999987654322222 222 24577767778888999999999875
No 277
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.32 E-value=5.9e-06 Score=69.29 Aligned_cols=79 Identities=13% Similarity=0.086 Sum_probs=56.4
Q ss_pred CCCeEEEEEEEeecCCC-------CeEEEEEEC-----CEE------------ccC--CCCeEEEee---CcEEEEEEcC
Q psy2166 706 EGEIAHFEASLIPVGDQ-------TMTVEFLYN-----GKP------------IEA--SHRIRTVHA---FGMVVLEILG 756 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p-------~~~v~W~~~-----g~~------------l~~--~~~~~~~~~---~~~~~L~i~~ 756 (805)
.|+.++|.|... -.| .+.|.|.|- .+. ..+ ..|+.+..+ .+..+|+|.+
T Consensus 1 ~~~~v~LpC~~~--~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~n 78 (110)
T cd05902 1 LSSSVLLPCVFT--LPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSR 78 (110)
T ss_pred CCCcEEEeeEEE--cCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECC
Confidence 388999999976 222 368999984 111 001 134444332 3568999999
Q ss_pred CCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 757 TKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 757 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
++.+|+|.|.|.+.......+..++|+|..
T Consensus 79 v~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 79 LRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred CCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999999777788888888753
No 278
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.32 E-value=3.9e-06 Score=66.89 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=46.3
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG----IVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
++|.|.+.+ +.|.+.++|+++|+++..........+++ .+.|.+.....+|.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~-~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSG-SKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecC-cCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 689999986 67889999999999996443222222222 3346666555566779999999977653
No 279
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.32 E-value=5.9e-06 Score=67.94 Aligned_cols=75 Identities=20% Similarity=0.257 Sum_probs=52.7
Q ss_pred eEEEEEEEeecCCCC---eEEEEEECC--E--Ec-----------cC--CCCeEEEe-eCcEEEEEEcCCCCCCCEEEEE
Q psy2166 709 IAHFEASLIPVGDQT---MTVEFLYNG--K--PI-----------EA--SHRIRTVH-AFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 709 ~~~l~C~~~~~g~p~---~~v~W~~~g--~--~l-----------~~--~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
.++|.|... ...|. ..|.|.|.. . .+ .. .+|+.+.. ..+..+|.|.+++.+|+|.|+|
T Consensus 2 ~v~L~C~f~-~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFI-NPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred cEEEEeEee-cCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence 589999997 12222 269999831 1 11 11 13444321 2334689999999999999999
Q ss_pred EEEc-CCccEEEEEEEEE
Q psy2166 768 RATN-KWGQAEISVNLEC 784 (805)
Q Consensus 768 ~a~N-~~G~~~~~~~l~V 784 (805)
.+.| +.|..+..+.|+|
T Consensus 81 ~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEeCCCCCeEEEEEEEE
Confidence 9999 7999999999988
No 280
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.31 E-value=3.3e-06 Score=72.73 Aligned_cols=76 Identities=14% Similarity=0.273 Sum_probs=51.2
Q ss_pred CCCceecCCCcEEEEEEEecCCC--CCceEEEEECCE------ec---------C-CCC----ceEEEec--CcEEEEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKND--PNLKIEWIFNGK------PL---------E-LGS----RFKTTAD--FGFVTLDL 128 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~--p~~~v~W~k~g~------~i---------~-~~~----~~~~~~~--~~~~~L~I 128 (805)
+..+.+.+|+.++|.|....... ....|.|++... .+ . ... |+.+..+ .+..+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 44678899999999999873211 235799986311 11 0 112 3333222 24578999
Q ss_pred cccccCCCeEEEEEEEeCCe
Q psy2166 129 TEVYDRDQGIYTCRAWNLAG 148 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~a~n~~g 148 (805)
.+++.+|+|.|.|.+.|...
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999998643
No 281
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.31 E-value=3.5e-06 Score=68.63 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=50.2
Q ss_pred ccCCCeEEEEEEEeeCCCCCcE--EEEEECCEEccCCCceE--EEeeCCEEEEEEccCCCCCCE-EEEEEEEcCCcc
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLV--VEWFYNGKKLPHGHRYR--TFHDFGIVILDILYCYEENSG-VYECRATNKYGS 579 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~--v~W~~~g~~l~~~~~~~--~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~g~ 579 (805)
+.+|+.++|+|.+.+ +.|.+. +.|+|+++.|....... .......++|++... .+|.| .|+|+|.+..+.
T Consensus 13 ~~eG~~~tL~C~v~g-~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~-r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 13 QPVGKNYTLQCDVPG-VAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVD-REDHGANFSCETELDLRP 87 (100)
T ss_pred ccCCCcEEEEEEEcC-cCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecc-hhhCCcEEEEEEEeccCc
Confidence 789999999999997 788887 79999999996532111 011223456777754 55555 999999987654
No 282
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.31 E-value=3.2e-06 Score=69.55 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=47.3
Q ss_pred CCcEEEEEEEecCCCCCceEEEEECCEecC------------------CCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 81 AQPLHLEAQVEPKNDPNLKIEWIFNGKPLE------------------LGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 81 G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~------------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
|++|+|.|... ......|.|+|+..... ..+|+.+..+ .+|.|.+++.+|+|.|+|.
T Consensus 1 G~~VtL~c~~~--~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNL--PENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccC--CCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEE
Confidence 89999999987 46667899999653221 1124444433 4899999999999999999
Q ss_pred EEeCCe
Q psy2166 143 AWNLAG 148 (805)
Q Consensus 143 a~n~~g 148 (805)
+....|
T Consensus 76 v~~~~~ 81 (92)
T cd05741 76 IISTNG 81 (92)
T ss_pred EEcCCC
Confidence 988753
No 283
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.30 E-value=2.9e-06 Score=72.66 Aligned_cols=71 Identities=15% Similarity=0.269 Sum_probs=48.9
Q ss_pred ccCCCCeEEEEEEEeecCCC----CeEEEEEEC----CEE--c----c-----CC----CCeEEEe--eCcEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ----TMTVEFLYN----GKP--I----E-----AS----HRIRTVH--AFGMVVLEILGT 757 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p----~~~v~W~~~----g~~--l----~-----~~----~~~~~~~--~~~~~~L~i~~v 757 (805)
.+.+|+.++|.|... ..+ ...|.|++. +.+ + . .. .|+.+.. ..+...|.|.++
T Consensus 9 ~~~~G~~v~L~C~~s--~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v 86 (115)
T cd05880 9 EAVNGTDVRLKCTFS--SSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQL 86 (115)
T ss_pred EEEcCCCEEEEEEEE--eCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeC
Confidence 889999999999987 332 357999751 111 1 0 11 1222211 134568999999
Q ss_pred CCCCCEEEEEEEEcCCcc
Q psy2166 758 KIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 758 ~~~d~G~Y~C~a~N~~G~ 775 (805)
+.+|+|.|.|.+.|..+.
T Consensus 87 ~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 87 QPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred ChhhCEEEEEEEEeCCCC
Confidence 999999999999998763
No 284
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.26 E-value=3.3e-06 Score=72.75 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=48.8
Q ss_pred ccCCCCeEEEEEEEeecCC--CCeEEEEEECC------EE-c--------c-CC----CCeEEEee--CcEEEEEEcCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGD--QTMTVEFLYNG------KP-I--------E-AS----HRIRTVHA--FGMVVLEILGTK 758 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~--p~~~v~W~~~g------~~-l--------~-~~----~~~~~~~~--~~~~~L~i~~v~ 758 (805)
.+.+|+.++|.|....... ....|.|++.. .. + . .. .|+.+..+ .+.+.|+|.+++
T Consensus 9 ~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 88 (116)
T cd05715 9 YAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQ 88 (116)
T ss_pred EEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCC
Confidence 7889999999999872111 12579998621 01 0 0 11 22222221 235789999999
Q ss_pred CCCCEEEEEEEEcCCcc
Q psy2166 759 IEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~~G~ 775 (805)
.+|+|.|.|.+.|.-+.
T Consensus 89 ~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 89 FTDNGTYTCDVKNPPDI 105 (116)
T ss_pred cccCEEEEEEEEeCCCC
Confidence 99999999999987654
No 285
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.25 E-value=1.5e-05 Score=66.93 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=57.7
Q ss_pred CCCeEEEEEEEeecCCC-----------CeEEEEEEC-----CE-----Ec------------cCCCCeEEEee---CcE
Q psy2166 706 EGEIAHFEASLIPVGDQ-----------TMTVEFLYN-----GK-----PI------------EASHRIRTVHA---FGM 749 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p-----------~~~v~W~~~-----g~-----~l------------~~~~~~~~~~~---~~~ 749 (805)
.|++++|.|... -.| ...|+|++- |+ .+ .-..|..+..+ .+.
T Consensus 1 ~~g~v~LPC~f~--~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~ 78 (117)
T cd05901 1 LSGSVVLPCRFS--TLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGD 78 (117)
T ss_pred CCCCEEEeeEEE--ecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCc
Confidence 378999999998 433 248999983 21 11 00124444322 256
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 750 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
.+|+|.+++..|+|.|+|.+.+.....+..++|.|..
T Consensus 79 asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 79 ASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred eEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 7999999999999999999999998999999998863
No 286
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.23 E-value=4.1e-06 Score=69.45 Aligned_cols=71 Identities=24% Similarity=0.269 Sum_probs=50.9
Q ss_pred cCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc-eEE--EeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 509 KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR-YRT--FHDFG---IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 509 ~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~-~~~--~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
..|+.++|.|.+.++.++.+.++|++||..+..... ... ..++. .+.|.|.....+|.|.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 478999999999964333689999999999976543 111 22222 334777766666999999999987654
No 287
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.22 E-value=3.9e-06 Score=65.97 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=47.6
Q ss_pred CceecccccccccCCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEE
Q psy2166 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 281 (805)
Q Consensus 203 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p-~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 281 (805)
|.+...+... +..+..++|.|.+ .+.+ .+.+.|+ +..... .............|.|.++..+|.|.|+|.|.
T Consensus 2 P~I~~~~~~~--~~~~~~~~l~C~~--~~~~~~~~~~W~-~~~~~~--~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~ 74 (75)
T PF13927_consen 2 PQISVPPPPV--VTSGGSVTLTCSA--EGGPPPPSISWY-DSNPSF--NSNSRGSSSSNSTLTISNVTRSDNGTYTCIAS 74 (75)
T ss_dssp SEEEEESTSE--EETTEEEEEEEEE--SSEESSEEEEEE-TEEEEE--EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEE
T ss_pred CEEEEcCCCc--EeeceeEEEEEEE--ccccCCeEEEEE-ecCCce--eeeeeeccceeeEEEEccCCHHhCcEEEEEEE
Confidence 5555555554 2333349999998 5555 8999999 111111 11111222335689999999999999999998
Q ss_pred c
Q psy2166 282 N 282 (805)
Q Consensus 282 n 282 (805)
|
T Consensus 75 N 75 (75)
T PF13927_consen 75 N 75 (75)
T ss_dssp E
T ss_pred C
Confidence 6
No 288
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.20 E-value=9.3e-06 Score=64.66 Aligned_cols=65 Identities=9% Similarity=0.121 Sum_probs=46.2
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeC-C----EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF-G----IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~-~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
++|+|.+.+ +.|.+.|+|++||+.|...........+ + .+.|.|.....+|...|+|.|.+....
T Consensus 2 ~~LtC~a~g-~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSG-SKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecC-ccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999996 5788999999999998754332222222 2 244666555566778999999987654
No 289
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.19 E-value=4.7e-06 Score=69.09 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=51.4
Q ss_pred CCCCeEEEEEEEeecCC-C-CeEEEEEECCEEccCCCC-e-EEEeeCc----EEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 705 SEGEIAHFEASLIPVGD-Q-TMTVEFLYNGKPIEASHR-I-RTVHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~-p-~~~v~W~~~g~~l~~~~~-~-~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
..|+.++|.|.+. |. | .+.|+|++||..+..... . .....++ .+.|.|.....+|.|.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a~--g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLAT--GFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEe--eEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 4689999999999 65 5 478999999999876643 1 1122222 245778777778999999999997654
No 290
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.18 E-value=9.3e-06 Score=70.05 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=54.1
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c---------CCCCceEEEe--cCcEEEEEEcccccCC
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L---------ELGSRFKTTA--DFGFVTLDLTEVYDRD 135 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i---------~~~~~~~~~~--~~~~~~L~I~~~~~~D 135 (805)
.+..+.+.+|++|+|+|..... .....+.|+|- +.. + ...+|+.+.. ..+.++|+|.+++.+|
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~-~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETS-WTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCC-CCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 3446789999999999998731 24567999982 211 1 1235777763 3457899999999999
Q ss_pred CeEEEEEEEe
Q psy2166 136 QGIYTCRAWN 145 (805)
Q Consensus 136 ~G~Y~C~a~n 145 (805)
+|.|.|.+..
T Consensus 84 sg~Y~C~~~~ 93 (116)
T cd07706 84 SAKYFCALST 93 (116)
T ss_pred CEEEEEEEEC
Confidence 9999999975
No 291
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.18 E-value=9.3e-06 Score=64.52 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=47.6
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEe-eCc----EEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH-AFG----MVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
++|.|.+. .++|.+.|+|+|||+.+.......... .++ .+.|.|..-..+|...|+|+|.|..-.
T Consensus 2 ~~LtC~a~-gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTS-GSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeC-CccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 68999998 357889999999999986543322222 222 346888777778888999999997643
No 292
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.18 E-value=7.6e-06 Score=67.67 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=54.9
Q ss_pred cCCCeEEEEEEEeeCCCCCcEEEEEECCEEcc--C-----C------Cce--EEEeeCCEEEEEEccCCCCCCEEEEEEE
Q psy2166 509 KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP--H-----G------HRY--RTFHDFGIVILDILYCYEENSGVYECRA 573 (805)
Q Consensus 509 ~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~--~-----~------~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 573 (805)
..|++|+|.|.... +.....+.|+|....+. . . .++ +..-+.....|.|.+++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~-~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPD-GTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCC-CcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 47999999998862 25667899998754321 1 0 111 1112234467999999999999999999
Q ss_pred EcCCcce-EEEEEEEE
Q psy2166 574 TNKYGSD-VTKASLKC 588 (805)
Q Consensus 574 ~n~~g~~-~~~~~l~V 588 (805)
.+..|.. ...+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9887665 55666665
No 293
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.16 E-value=1.1e-05 Score=64.03 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=45.9
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEe-eCC----EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH-DFG----IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
++|+|.+.+ +.|.+.++|+|||+.+.......... .++ .+.|.+.....+|...|+|+|.|..-.
T Consensus 2 ~~LtC~a~g-f~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSG-SKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCC-ccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999997 57889999999999986543222222 111 345777755556677999999986544
No 294
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.16 E-value=2.7e-05 Score=65.52 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=46.8
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEE-eeC-C---EEEEEEccCCCCCCE-EEEEEEEcCC
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF-HDF-G---IVILDILYCYEENSG-VYECRATNKY 577 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~-~---~~~L~i~~v~~~d~G-~Y~C~a~n~~ 577 (805)
...|+.++|.|.+.++-++...++|+|||+.+......... .++ . .+.|.+.. ...|.| .|+|.+.+..
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 56788899999999854446899999999998643222211 222 1 33466664 344544 5999999864
No 295
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.15 E-value=1.1e-05 Score=72.11 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=61.5
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEE----------ccC--CCCeE-EEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP----------IEA--SHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~----------l~~--~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
+|.+|+.|+|.|... .+...+.|+|+|..+. +.+ .+|++ +........|+|.+|+.+|+|.|+|..
T Consensus 26 ~V~ege~VtLsCs~t-~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 26 TVSEHVNVKISCNKT-SSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEcCCCCEEEEEecC-CCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 899999999999984 2556788999996321 111 13554 344445578999999999999999995
Q ss_pred EcC-Cc-cEEEEEEEEEEEeC
Q psy2166 770 TNK-WG-QAEISVNLECVVWS 788 (805)
Q Consensus 770 ~N~-~G-~~~~~~~l~V~~~~ 788 (805)
.-- .| ..+.++.|+|....
T Consensus 105 ~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EecCCCCCceeEEEEEEEchh
Confidence 432 35 67777888887643
No 296
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.14 E-value=2.2e-05 Score=67.60 Aligned_cols=85 Identities=13% Similarity=0.231 Sum_probs=59.0
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECCE-----ecC--------------CCCceEEEec--CcEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGK-----PLE--------------LGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~-----~i~--------------~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
+..+.+.+|++++|.|... .......+.|++... .+. ..+|+.+..+ ...++|.|.++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp ESEEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred CCeEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 4467899999999999998 234566899998321 111 1234444443 35789999999
Q ss_pred ccCCCeEEEEEEEeC-CeeEEEEEEEEE
Q psy2166 132 YDRDQGIYTCRAWNL-AGETFTSTTIYC 158 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~-~g~~~~~~~l~V 158 (805)
+.+|+|.|.|.+... .......+.|.|
T Consensus 87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999999886 233334444543
No 297
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.13 E-value=2.7e-05 Score=67.08 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=57.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCE-----Ecc--------------CCCCeEEEee--CcEEEEEEcCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGK-----PIE--------------ASHRIRTVHA--FGMVVLEILGTKIED 761 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~-----~l~--------------~~~~~~~~~~--~~~~~L~i~~v~~~d 761 (805)
.+.+|+++.|.|... .......+.|++... .+. ...++.+..+ .+.+.|.|.+++.+|
T Consensus 12 ~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~D 90 (114)
T PF07686_consen 12 TVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSD 90 (114)
T ss_dssp EEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGG
T ss_pred EEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCc
Confidence 899999999999997 234667999998221 111 1134444333 346889999999999
Q ss_pred CEEEEEEEEcC-CccEEEEEEEEE
Q psy2166 762 TGVYTCRATNK-WGQAEISVNLEC 784 (805)
Q Consensus 762 ~G~Y~C~a~N~-~G~~~~~~~l~V 784 (805)
+|.|.|.+... .+.....+.|+|
T Consensus 91 sG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 91 SGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999987 445555555554
No 298
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.13 E-value=2.6e-05 Score=64.89 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=52.0
Q ss_pred CcEEEEEEEecCC-CCCceEEEEEC--CE---ec---C----------CCCceEEEe--cCcEEEEEEcccccCCCeEEE
Q psy2166 82 QPLHLEAQVEPKN-DPNLKIEWIFN--GK---PL---E----------LGSRFKTTA--DFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 82 ~~v~L~C~~~~~~-~p~~~v~W~k~--g~---~i---~----------~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
.+|+|+|...... .....|.|+|. +. .+ . ..+|..+.. .....+|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 3689999987321 12448999993 21 11 0 013444443 234568999999999999999
Q ss_pred EEEEe-CCeeEEEEEEEEE
Q psy2166 141 CRAWN-LAGETFTSTTIYC 158 (805)
Q Consensus 141 C~a~n-~~g~~~~~~~l~V 158 (805)
|.+.+ ..|..+..+.|.|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 99987 5677777777766
No 299
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.10 E-value=2.7e-05 Score=65.35 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=54.0
Q ss_pred CCcEEEEEEEecCC-----CCCceEEEEEC-----CEec----C----------CCCceEEEec---CcEEEEEEccccc
Q psy2166 81 AQPLHLEAQVEPKN-----DPNLKIEWIFN-----GKPL----E----------LGSRFKTTAD---FGFVTLDLTEVYD 133 (805)
Q Consensus 81 G~~v~L~C~~~~~~-----~p~~~v~W~k~-----g~~i----~----------~~~~~~~~~~---~~~~~L~I~~~~~ 133 (805)
|++++|+|...... ...+.|.|.|- ...+ . ..+|..+..+ .+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999966211 12578999984 1111 0 1224445432 2567999999999
Q ss_pred CCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 134 RDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
+|+|.|+|.+.......+....|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999866556666666664
No 300
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.10 E-value=3.6e-05 Score=64.76 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=49.6
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-EeeCc----EEEEEEcCCCCCCCE-E
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFG----MVVLEILGTKIEDTG-V 764 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~----~~~L~i~~v~~~d~G-~ 764 (805)
.|.|..... ....|+.++|.|.+.++-.+...|+|+|||+.+........ ..+++ .+.|.+.. ...|.| .
T Consensus 8 ~p~i~~~~~---~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ 83 (111)
T cd05772 8 VPVVSGPSG---RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQ 83 (111)
T ss_pred CcEeCCchh---ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCc
Confidence 444443322 45678899999999943233479999999999865322111 12221 34577764 444444 5
Q ss_pred EEEEEEcCC
Q psy2166 765 YTCRATNKW 773 (805)
Q Consensus 765 Y~C~a~N~~ 773 (805)
|+|.+.+..
T Consensus 84 ytC~V~H~~ 92 (111)
T cd05772 84 VTCEVQHRT 92 (111)
T ss_pred eEEEEEeCC
Confidence 999999864
No 301
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.10 E-value=3.2e-05 Score=62.95 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=53.8
Q ss_pred CeEEEEEEEeecCCCCeEEEEEECC----EEcc-----------C--CCCeEEE-eeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 708 EIAHFEASLIPVGDQTMTVEFLYNG----KPIE-----------A--SHRIRTV-HAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p~~~v~W~~~g----~~l~-----------~--~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
+.++|.|.... ......|+|.|.. ..+. . .+|+.+. .+.+..+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~-~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQV-NETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecC-CCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEE
Confidence 36899999862 2344689999842 1111 0 1344442 2233568999999999999999996
Q ss_pred -EcCCccEEEEEEEEE
Q psy2166 770 -TNKWGQAEISVNLEC 784 (805)
Q Consensus 770 -~N~~G~~~~~~~l~V 784 (805)
..+.|+.+.++.|+|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 667999999999988
No 302
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.09 E-value=2e-05 Score=68.08 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=53.3
Q ss_pred cCCCCceecCCCcEEEEEEEecCC---C-CCceEEEEECC--E---e-c-----------CCCCceEEE--ecCcEEEEE
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKN---D-PNLKIEWIFNG--K---P-L-----------ELGSRFKTT--ADFGFVTLD 127 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~---~-p~~~v~W~k~g--~---~-i-----------~~~~~~~~~--~~~~~~~L~ 127 (805)
..|..+.+.+|+.|+|+|...... . ....+.|+|.. . . + ...+|+.+. ...+.++|.
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~ 83 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL 83 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence 345567899999999999876221 1 13568999842 1 1 1 011366663 345678999
Q ss_pred EcccccCCCeEEEEEEEeC
Q psy2166 128 LTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 128 I~~~~~~D~G~Y~C~a~n~ 146 (805)
|.+++.+|+|.|.|++...
T Consensus 84 I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 84 ISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EccCChhhCeEEEEEEEcC
Confidence 9999999999999998764
No 303
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.09 E-value=1.9e-05 Score=68.10 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=51.3
Q ss_pred ccCCCCeEEEEEEEeecCC-CCeEEEEEEC--CEE---c---------cCCCCeEEEe--eCcEEEEEEcCCCCCCCEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGD-QTMTVEFLYN--GKP---I---------EASHRIRTVH--AFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~-p~~~v~W~~~--g~~---l---------~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y 765 (805)
.+.+|++++|.|... .. ....+.|+|- +.. + .-.+|+.+.. ..+.+.|+|.+++.+|+|.|
T Consensus 10 ~~~~G~~v~L~C~~~--~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y 87 (116)
T cd07706 10 SVQVGEEVTLNCRYE--TSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY 87 (116)
T ss_pred EEcCCCCEEEEEEEe--CCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 899999999999987 43 5678999982 211 1 1135666543 34578999999999999999
Q ss_pred EEEEEcC
Q psy2166 766 TCRATNK 772 (805)
Q Consensus 766 ~C~a~N~ 772 (805)
.|.+.+.
T Consensus 88 ~C~~~~~ 94 (116)
T cd07706 88 FCALSTL 94 (116)
T ss_pred EEEEECC
Confidence 9999853
No 304
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.08 E-value=1.7e-05 Score=65.67 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=52.7
Q ss_pred CCcEEEEEEEecCCCCCceEEEEECCE----ecC-----C--------CCceEE-EecCcEEEEEEcccccCCCeEEEEE
Q psy2166 81 AQPLHLEAQVEPKNDPNLKIEWIFNGK----PLE-----L--------GSRFKT-TADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 81 G~~v~L~C~~~~~~~p~~~v~W~k~g~----~i~-----~--------~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
|++|+|.|.... ......|.|+|... .+. . .+|+.+ ..+.+..+|.|.+++.+|+|.|+|.
T Consensus 1 G~~vtL~C~~~~-~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTL-PEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCC-CCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEE
Confidence 889999999763 22234699998421 110 0 113222 2223567899999999999999999
Q ss_pred EE-eCCeeEEEEEEEEE
Q psy2166 143 AW-NLAGETFTSTTIYC 158 (805)
Q Consensus 143 a~-n~~g~~~~~~~l~V 158 (805)
+. ...|.....+.|+|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 86 45778777888876
No 305
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.07 E-value=2.5e-05 Score=64.77 Aligned_cols=76 Identities=17% Similarity=0.200 Sum_probs=53.0
Q ss_pred CCeEEEEEEEeecCCCC-eEEEEEECCE----Ecc---C----------CCCeEE-EeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQT-MTVEFLYNGK----PIE---A----------SHRIRT-VHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~-~~v~W~~~g~----~l~---~----------~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
|++++|.|... .... -.|.|+|... .+. . .+|+.+ ..+.+.+.|+|.+++.+|+|.|.|
T Consensus 1 G~~vtL~C~~~--~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C 78 (97)
T cd05846 1 GGNVTLSCNLT--LPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKC 78 (97)
T ss_pred CCcEEEEEEeC--CCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEE
Confidence 78999999976 3332 3699998421 110 0 112222 122345789999999999999999
Q ss_pred EEE-cCCccEEEEEEEEE
Q psy2166 768 RAT-NKWGQAEISVNLEC 784 (805)
Q Consensus 768 ~a~-N~~G~~~~~~~l~V 784 (805)
... .+.|..+..+.|+|
T Consensus 79 ~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 79 IFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEEeCCCCCeeeEEEEEE
Confidence 976 66888888888887
No 306
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.07 E-value=1.6e-05 Score=65.93 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=55.4
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce--EEEe-eCC---EEEEEEccCCCCCCEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY--RTFH-DFG---IVILDILYCYEENSGV 568 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~--~~~~-~~~---~~~L~i~~v~~~d~G~ 568 (805)
+|.+.+.++.......++.++|.|.+.++-.+...++|++||+.+..+... .... ++. .+.|.+..-...+...
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 80 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV 80 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence 466666555554466788899999999865558999999999998543111 1112 232 2346665544445679
Q ss_pred EEEEEEcCC
Q psy2166 569 YECRATNKY 577 (805)
Q Consensus 569 Y~C~a~n~~ 577 (805)
|+|.+.+..
T Consensus 81 ~sC~V~H~~ 89 (100)
T cd07699 81 YTCEVTHEG 89 (100)
T ss_pred EEEEEEecC
Confidence 999998764
No 307
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.06 E-value=2e-05 Score=65.59 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=52.0
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEECCE-----ec--------CCCCceEEEec--CcEEEEEEcccccCCCeEEE
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGK-----PL--------ELGSRFKTTAD--FGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~-----~i--------~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~ 140 (805)
+.+.+|++|+|+|..... .....+.|+|... .+ ...+|+.+..+ ++.++|+|.+++.+|+|.|.
T Consensus 2 v~~~~G~~vtl~C~~~~~-~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~ 80 (98)
T cd05716 2 VTGELGGSVTIPCPYPPK-NRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYW 80 (98)
T ss_pred EEEEeCCeEEEEeeCCCC-CCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEE
Confidence 367899999999998732 4566789998531 11 12346666433 56789999999999999999
Q ss_pred EEEEeC
Q psy2166 141 CRAWNL 146 (805)
Q Consensus 141 C~a~n~ 146 (805)
|.+...
T Consensus 81 C~~~~~ 86 (98)
T cd05716 81 CGVGDD 86 (98)
T ss_pred EEcccC
Confidence 999764
No 308
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.06 E-value=1.7e-05 Score=65.96 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=51.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCE-----Ec--------cCCCCeEEEe--eCcEEEEEEcCCCCCCCEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGK-----PI--------EASHRIRTVH--AFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~-----~l--------~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
.+.+|++++|.|.... ..+...+.|+|... .+ .-..|+.+.. ..+.+.|+|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~vtl~C~~~~-~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPP-KNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEeCCeEEEEeeCCC-CCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 6789999999999861 24567899998531 11 1124555532 2567899999999999999999
Q ss_pred EEEcCC
Q psy2166 768 RATNKW 773 (805)
Q Consensus 768 ~a~N~~ 773 (805)
.+.+..
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 988753
No 309
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.04 E-value=5.3e-05 Score=62.33 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=51.2
Q ss_pred cEEEEEEEecC--CCCCceEEEEECC----EecC-------------CCCceEEEe-cCcEEEEEEcccccCCCeEEEEE
Q psy2166 83 PLHLEAQVEPK--NDPNLKIEWIFNG----KPLE-------------LGSRFKTTA-DFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 83 ~v~L~C~~~~~--~~p~~~v~W~k~g----~~i~-------------~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
.|+|+|..... .....+|+|.|.. ..+. ..+|..... ..+..+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68999999731 1112369998831 1110 112333321 22345899999999999999999
Q ss_pred EEe-CCeeEEEEEEEEE
Q psy2166 143 AWN-LAGETFTSTTIYC 158 (805)
Q Consensus 143 a~n-~~g~~~~~~~l~V 158 (805)
+.+ ..|..+..+.|+|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 998 6788888888877
No 310
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.02 E-value=5.2e-05 Score=61.88 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=46.8
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc-eEEE-e-eCCEEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR-YRTF-H-DFGIVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~-~~~~-~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
+..|+.++|.|.+.++-++...++|++||+++..+.. .... . ++.........+...+...|+|.+.+....
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 4578999999999987677779999999999865411 1111 1 222222222223345666999999886543
No 311
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.02 E-value=4.4e-05 Score=62.54 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=48.6
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCC---ceEEEeeCCEEEEEEccCCCCCCEEEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGH---RYRTFHDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~---~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
+|.+.+..+.. .|+.++|.|.+.++-++...++|+++|+.+..+. .+....++.........+...|.+.|+|
T Consensus 2 pP~v~v~~~~~----~~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC 77 (93)
T cd07698 2 PPEVRVTRKRA----PDGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSC 77 (93)
T ss_pred CCEEEEEecCC----CCCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEE
Confidence 46665554432 1788999999997545556999999997543321 1111222232222223334458899999
Q ss_pred EEEcCCc
Q psy2166 572 RATNKYG 578 (805)
Q Consensus 572 ~a~n~~g 578 (805)
.+.+..-
T Consensus 78 ~V~H~~~ 84 (93)
T cd07698 78 RVEHSGL 84 (93)
T ss_pred EEEeCCC
Confidence 9987643
No 312
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.01 E-value=8.1e-05 Score=62.52 Aligned_cols=79 Identities=20% Similarity=0.350 Sum_probs=54.1
Q ss_pred CCcEEEEEEEecCC---------CCCceEEEEEC-----CE-----ec------------CCCCceEEEec---CcEEEE
Q psy2166 81 AQPLHLEAQVEPKN---------DPNLKIEWIFN-----GK-----PL------------ELGSRFKTTAD---FGFVTL 126 (805)
Q Consensus 81 G~~v~L~C~~~~~~---------~p~~~v~W~k~-----g~-----~i------------~~~~~~~~~~~---~~~~~L 126 (805)
|.+++|+|.....+ ...+.|.|+|- |. .+ ...+|..+..+ .+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78899999998321 12458999873 21 11 01224444322 256799
Q ss_pred EEcccccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 127 DLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 127 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
.|.+++.+|+|.|+|.+.+.....+....|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999999999876666666666664
No 313
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.00 E-value=0.0009 Score=68.32 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCcccEEEEEEEEcCC---eeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC-
Q psy2166 260 MVVLEILGTKIEDTGVYTCRATNKW---GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE- 335 (805)
Q Consensus 260 ~~~L~i~~~~~~d~G~Y~C~~~n~~---g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~- 335 (805)
...|.|.+++..++|.|+=.+.+.. ...+..+.|.+. .+|.+...+.+ +.+|+...-.|.+.. .+|.
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y-----r~PsVsV~p~P---VL~Ge~YkAtC~vA~-YYPp~ 358 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY-----KRPNITVIGDP---VLLGNPYAAYCKVNK-YYPPH 358 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe-----cCCCccccCCc---cccCCCceEEEEeee-ecCCC
Confidence 4579999999999999986655322 233556666665 45666655554 668999999999974 3443
Q ss_pred -cEEEEEECCEEccC
Q psy2166 336 -LKVEWFHNGKPIFH 349 (805)
Q Consensus 336 -~~v~W~~~g~~l~~ 349 (805)
..+.|++||.++..
T Consensus 359 SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 359 SVIVKWTSNFGNIGK 373 (566)
T ss_pred ceEEEEEeCCcccCc
Confidence 57999999988864
No 314
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.00 E-value=2.3e-05 Score=65.72 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=49.4
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEEC--C--Eec------C------------CCCceEEEecCcEEEEEEcccccC
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFN--G--KPL------E------------LGSRFKTTADFGFVTLDLTEVYDR 134 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g--~~i------~------------~~~~~~~~~~~~~~~L~I~~~~~~ 134 (805)
.+.+|++|+|.|.+.. .....+.|+|- | ..+ . ...|+.+..+...+.|+|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~~--~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVLN--SSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEecC--CCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence 4689999999999862 33456999983 3 111 0 023566656667889999999999
Q ss_pred CCeEEEEEEEe
Q psy2166 135 DQGIYTCRAWN 145 (805)
Q Consensus 135 D~G~Y~C~a~n 145 (805)
|+|.|.|.+.+
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999999864
No 315
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.98 E-value=3.2e-05 Score=65.42 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=48.3
Q ss_pred ccCCCCeEEEEEEEeecCC-CCeEEEEEEC--C---EEc------c-----------CCCCeEE--EeeCcEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVGD-QTMTVEFLYN--G---KPI------E-----------ASHRIRT--VHAFGMVVLEILGT 757 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~-p~~~v~W~~~--g---~~l------~-----------~~~~~~~--~~~~~~~~L~i~~v 757 (805)
.+.+|++++|.|.+. +. ....+.|||- | +.+ . ...++.+ ..+...+.|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~--~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAK--GISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEe--cCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence 688999999999986 53 3458999982 2 110 0 0234443 23345678999999
Q ss_pred CCCCCEEEEEEEEcC
Q psy2166 758 KIEDTGVYTCRATNK 772 (805)
Q Consensus 758 ~~~d~G~Y~C~a~N~ 772 (805)
+.+|+|.|.|...+.
T Consensus 80 ~~~Dsg~YyCa~~~~ 94 (107)
T cd07700 80 KPEDSGTYFCMTVGS 94 (107)
T ss_pred CHHHCEEEEEeEcCC
Confidence 999999999998643
No 316
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.97 E-value=6.2e-05 Score=61.26 Aligned_cols=76 Identities=24% Similarity=0.269 Sum_probs=54.0
Q ss_pred CcEEEEEEEecCCCCCceEEEEECC----EecC-------------CCCceEEE-ecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 82 QPLHLEAQVEPKNDPNLKIEWIFNG----KPLE-------------LGSRFKTT-ADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 82 ~~v~L~C~~~~~~~p~~~v~W~k~g----~~i~-------------~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
++++|+|.... ......|+|.|.. ..+. ..+|..+. .+.+..+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~-~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQV-NETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecC-CCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEE
Confidence 47899999873 3456689999842 1221 11244442 2234558999999999999999997
Q ss_pred E-eCCeeEEEEEEEEE
Q psy2166 144 W-NLAGETFTSTTIYC 158 (805)
Q Consensus 144 ~-n~~g~~~~~~~l~V 158 (805)
. ...|+.+....|+|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 5 56888888888887
No 317
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.96 E-value=3.7e-05 Score=65.01 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=48.3
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEEC--C---Eec------C-----------CCCceEE--EecCcEEEEEEcccc
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFN--G---KPL------E-----------LGSRFKT--TADFGFVTLDLTEVY 132 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g---~~i------~-----------~~~~~~~--~~~~~~~~L~I~~~~ 132 (805)
.|.+|++|+|.|.+... .....+.|||- | ..+ . ...|+.+ ..++..+.|+|.+++
T Consensus 2 ~v~~G~~vtL~C~~~~~-~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKGI-SENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EEcCCCCEEEEEEEecC-CCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 57899999999998631 23457999983 2 110 0 0235654 334556789999999
Q ss_pred cCCCeEEEEEEEe
Q psy2166 133 DRDQGIYTCRAWN 145 (805)
Q Consensus 133 ~~D~G~Y~C~a~n 145 (805)
.+|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999853
No 318
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.94 E-value=4.4e-05 Score=62.23 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=48.1
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeE-EEeeCc----EEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
|+.+.|.|.+. .|+|.|.|+|+.++..+....... ...+.+ .+.|.+..-..++...++|.|.|..-..
T Consensus 14 ~~~~~~~C~s~-~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSS-GGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEE-EEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeC-CeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 78999999887 489999999999998772211111 111111 2468887666778899999999976543
No 319
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.92 E-value=7.3e-05 Score=60.78 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=50.0
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce---EEEeeCC---EEEEEEccCCCCCCEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY---RTFHDFG---IVILDILYCYEENSGV 568 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~---~~~~~~~---~~~L~i~~v~~~d~G~ 568 (805)
||.+.+..... ...|+.++|.|.+.++-++...++|.+||+++..+... ....++. .+.|.+. ..+...
T Consensus 1 ~P~V~v~~~~~--~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ 75 (94)
T cd05767 1 PPEVTVFSLKP--VELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDI 75 (94)
T ss_pred CCEEEEEeCCc--ccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCe
Confidence 35555443332 34567789999999876778999999999998654211 1112222 2235554 355669
Q ss_pred EEEEEEcCC
Q psy2166 569 YECRATNKY 577 (805)
Q Consensus 569 Y~C~a~n~~ 577 (805)
|+|.+.+..
T Consensus 76 ytC~V~H~~ 84 (94)
T cd05767 76 YSCIVEHWG 84 (94)
T ss_pred EEEEEEeCC
Confidence 999998753
No 320
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.90 E-value=8.6e-05 Score=60.84 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=45.7
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe-EEE-eeCcE----EEEEEcCCCCCCCEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RTV-HAFGM----VVLEILGTKIEDTGV 764 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~~~-~~~~~----~~L~i~~v~~~d~G~ 764 (805)
||.+....... . |+.++|.|.+.++-.+...++|+++|+.+...... ... ..++. +.|.| ...+.+.
T Consensus 2 pP~v~v~~~~~-~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v---~~~~~~~ 74 (93)
T cd07698 2 PPEVRVTRKRA-P---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV---PPEDKAR 74 (93)
T ss_pred CCEEEEEecCC-C---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEE---CCCCCCE
Confidence 45555554433 2 78899999999322233499999999744333211 111 22222 23444 3348899
Q ss_pred EEEEEEcCC
Q psy2166 765 YTCRATNKW 773 (805)
Q Consensus 765 Y~C~a~N~~ 773 (805)
|+|.+.+..
T Consensus 75 ytC~V~H~~ 83 (93)
T cd07698 75 YSCRVEHSG 83 (93)
T ss_pred EEEEEEeCC
Confidence 999998754
No 321
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.90 E-value=7e-05 Score=62.09 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=53.8
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCc---eEEEecCc---EEEEEEcccccCCCeEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR---FKTTADFG---FVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~---~~~~~~~~---~~~L~I~~~~~~D~G~Y 139 (805)
|.+.+-++......+++.++|.|.+.+.-.....|+|++||..+..+.. .....++. .+.|.+.....++...|
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~ 81 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY 81 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence 4444444445566678899999999975333789999999999864311 11111221 33566766666667899
Q ss_pred EEEEEeCC
Q psy2166 140 TCRAWNLA 147 (805)
Q Consensus 140 ~C~a~n~~ 147 (805)
.|.+.+..
T Consensus 82 sC~V~H~~ 89 (100)
T cd07699 82 TCEVTHEG 89 (100)
T ss_pred EEEEEecC
Confidence 99998764
No 322
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.90 E-value=4.7e-05 Score=63.86 Aligned_cols=67 Identities=16% Similarity=0.366 Sum_probs=48.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--C--EE---cc---C------------CCCeEEEeeCcEEEEEEcCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--G--KP---IE---A------------SHRIRTVHAFGMVVLEILGTKIE 760 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g--~~---l~---~------------~~~~~~~~~~~~~~L~i~~v~~~ 760 (805)
.+.+|++|+|.|.+. +.-...+.|+|- | .. |. . ..++.+..+.....|+|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~--~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVL--NSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEec--CCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence 578999999999986 444567999983 2 11 00 0 12344444557788999999999
Q ss_pred CCEEEEEEEEc
Q psy2166 761 DTGVYTCRATN 771 (805)
Q Consensus 761 d~G~Y~C~a~N 771 (805)
|+|.|.|.+.+
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999999865
No 323
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.89 E-value=7.6e-05 Score=63.01 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=56.6
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc---eEEEee-CC---EEEEEEccCCCCC-C
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR---YRTFHD-FG---IVILDILYCYEEN-S 566 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~---~~~~~~-~~---~~~L~i~~v~~~d-~ 566 (805)
+|.+.+.++....+.+++.++|.|.+.++-++...|+|+|||+.+..+.. .....+ +. .+.|.|......| .
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~ 81 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR 81 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence 46666665555446677889999999986555679999999999865422 111222 12 3346666444334 4
Q ss_pred EEEEEEEEcCCcceE
Q psy2166 567 GVYECRATNKYGSDV 581 (805)
Q Consensus 567 G~Y~C~a~n~~g~~~ 581 (805)
..|+|.+.+......
T Consensus 82 ~~ytC~V~H~g~~~~ 96 (115)
T cd05769 82 NTFTCIVQFYGGTDT 96 (115)
T ss_pred CeEEEEEEEeCCccc
Confidence 599999987644433
No 324
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.89 E-value=0.0001 Score=57.32 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=55.5
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l 293 (805)
.+..|++++|+|...+.+.|.+.|+|+..+..... ....+..+|.+..+...|+|.++|.+.......+..+.+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 37899999999998544455669999976543221 111233579999999999999999998665555666666
Q ss_pred EEe
Q psy2166 294 ECV 296 (805)
Q Consensus 294 ~v~ 296 (805)
.|.
T Consensus 84 ~Vl 86 (88)
T cd07694 84 KVL 86 (88)
T ss_pred EEE
Confidence 654
No 325
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.89 E-value=0.0002 Score=57.96 Aligned_cols=69 Identities=19% Similarity=0.336 Sum_probs=46.8
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-EE--EeeCCEEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RT--FHDFGIVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
+..|+..+|.|.|.++-++...++|+|||+++. +... .. ..++.........+...+...|+|.+.+..
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 456777899999998878889999999999986 3211 11 222333222222334567779999998753
No 326
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.87 E-value=6.9e-05 Score=64.35 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=51.1
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec-----------------CCCCceEEEecC--cEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL-----------------ELGSRFKTTADF--GFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i-----------------~~~~~~~~~~~~--~~~~L~I~~~ 131 (805)
+....+.+|++|+|.|...........+.|||- |+.. ...+|+.+..+. ..+.|+|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 335788999999999987622112356999982 2211 012467666543 4568999999
Q ss_pred ccCCCeEEEEEEEe
Q psy2166 132 YDRDQGIYTCRAWN 145 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n 145 (805)
+.+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999999864
No 327
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.86 E-value=6.3e-05 Score=62.45 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=49.6
Q ss_pred ecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE--EEe----eCC---EEEEEEccCCCCCCEEEE
Q psy2166 500 TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR--TFH----DFG---IVILDILYCYEENSGVYE 570 (805)
Q Consensus 500 ~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~--~~~----~~~---~~~L~i~~v~~~d~G~Y~ 570 (805)
+.++....+..|..++|.|.+.++-++...++|++||+++....... ... ++. .+.|.|..-...+...|+
T Consensus 5 l~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~yt 84 (102)
T cd05768 5 VLPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFT 84 (102)
T ss_pred EeCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEE
Confidence 33333333566889999999998766677899999999986432111 111 122 234666543334566899
Q ss_pred EEEEcCC
Q psy2166 571 CRATNKY 577 (805)
Q Consensus 571 C~a~n~~ 577 (805)
|.+.+..
T Consensus 85 C~V~H~~ 91 (102)
T cd05768 85 CVVGHEA 91 (102)
T ss_pred EEeEeCC
Confidence 9998764
No 328
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.85 E-value=7.4e-05 Score=57.59 Aligned_cols=64 Identities=31% Similarity=0.460 Sum_probs=48.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCe----EEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRI----RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
+.|.|.+. +.+.+.+.|++++......... ..........|.|.+++.+|+|.|.|.+.+..+.
T Consensus 1 ~~l~C~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 68 (74)
T cd00096 1 VTLTCLAS--GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT 68 (74)
T ss_pred CEEEEEec--CCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence 47899998 6888999999998766544321 1112234567999999999999999999987643
No 329
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.85 E-value=0.0025 Score=65.06 Aligned_cols=79 Identities=22% Similarity=0.367 Sum_probs=57.8
Q ss_pred EEEEEcCCCCcccEEEEEEEEcCCeeE--EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC--c
Q psy2166 261 VVLEILGTKIEDTGVYTCRATNKWGQA--EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE--L 336 (805)
Q Consensus 261 ~~L~i~~~~~~d~G~Y~C~~~n~~g~~--~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~--~ 336 (805)
..|.|..++..++|.|+=.+.+..+.. ...+.|..+ .+|.+...+.+ +.+|+...-.|.+.. -+|. .
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y-----r~Psvsv~~~P---vL~Ge~y~A~C~aa~-YYPp~Sv 268 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY-----NAPLVDLSVHP---SLKGENYRAVCVVAS-YFPHSSV 268 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe-----cCCcccccCCc---cccCCCceEEEEeee-ecCCCce
Confidence 359999999999999987765654443 344444444 56666665554 668999999999974 4443 5
Q ss_pred EEEEEECCEEcc
Q psy2166 337 KVEWFHNGKPIF 348 (805)
Q Consensus 337 ~v~W~~~g~~l~ 348 (805)
.+.|++||.++.
T Consensus 269 ~~rWf~dg~~V~ 280 (486)
T PHA03273 269 KLRWYKNAKEVD 280 (486)
T ss_pred EEEEEeCCeecc
Confidence 799999999987
No 330
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.84 E-value=0.0048 Score=62.41 Aligned_cols=212 Identities=14% Similarity=0.113 Sum_probs=113.4
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEEEE
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 156 (805)
.+.+|+.+.+.=... .-...+.|--.-.+=..-..|.+........|.|..++...+|.|+=..-+..+.......+
T Consensus 138 ~a~~~g~l~y~sa~~---~~~~~~~~a~ga~Pg~~P~~y~~~g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~V 214 (466)
T PHA03270 138 TAPPGGELVYDSAPN---RTDPRVRWAEGAGPGARPRLYSVEGTFPTQRLVIQELTLATQGMYYWARGPADRPHRYGTWT 214 (466)
T ss_pred ccCCCceEEeccCcc---ccCcccccccCCCCCCCCccccccCCCCcceEEEEEcccccceEEEEEEecCCCceeeeeEE
Confidence 344666666554332 12346677532111111124555433344579999999999999999987766544444445
Q ss_pred EEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCC--C
Q psy2166 157 YCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ--T 234 (805)
Q Consensus 157 ~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p--~ 234 (805)
+|... .+|.+...+.. +.+|+...-.|.+.. .+| .
T Consensus 215 tV~~y---------------------------------------r~Psvsv~~~P---vL~Ge~Y~AtC~va~-YYPp~S 251 (466)
T PHA03270 215 RVRMF---------------------------------------RRPSLSIRPHA---VLEGEPFGATCVAAN-YYPGDR 251 (466)
T ss_pred EEEEe---------------------------------------cCCcccccCCc---cccCCCceEEEEeee-ecCCCc
Confidence 44321 23443333332 679999999999853 333 3
Q ss_pred eEEEEEECCEEccCCCcEEEEE---EcC---eEEEEEcCCCCc-ccEEEEEEEEc-CCeeE----EEEEEEEEeccCCCC
Q psy2166 235 MTVEFLYNGKPIEASHRIRTVH---AFG---MVVLEILGTKIE-DTGVYTCRATN-KWGQA----EISVNLECVDKSKGQ 302 (805)
Q Consensus 235 ~~i~W~k~g~~l~~~~~~~~~~---~~~---~~~L~i~~~~~~-d~G~Y~C~~~n-~~g~~----~~~~~l~v~~~~~~~ 302 (805)
..+.||+||.++.......... .++ .++|++.....+ ..=..+|.+.= ....+ +.+..-.|+ .
T Consensus 252 v~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY-----~ 326 (466)
T PHA03270 252 AAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVL-----P 326 (466)
T ss_pred eEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccc-----c
Confidence 6899999999886433222111 122 345555443322 22378999872 22222 222222222 4
Q ss_pred CCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccC
Q psy2166 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH 349 (805)
Q Consensus 303 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~ 349 (805)
+|.+.... ..| ...|.+.= ......+.|+.++.....
T Consensus 327 ~P~Isv~F------~dG---~AVCtA~C-VPegV~l~W~V~D~~~pa 363 (466)
T PHA03270 327 RPTIEMEF------GGD---EAVCTAAC-VPEGVTLAWLLGADPAPA 363 (466)
T ss_pred CCeEEEEE------eCC---EEEEeccc-cCCCCEEEEEecCCCCCC
Confidence 45544332 222 22365541 122468999987765543
No 331
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.79 E-value=0.0043 Score=62.79 Aligned_cols=80 Identities=15% Similarity=0.277 Sum_probs=59.8
Q ss_pred EEEEEcCCCCcccEEEEEEEEcCCeeE--EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC--c
Q psy2166 261 VVLEILGTKIEDTGVYTCRATNKWGQA--EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE--L 336 (805)
Q Consensus 261 ~~L~i~~~~~~d~G~Y~C~~~n~~g~~--~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~--~ 336 (805)
..|.|..++...+|.|+=...+..+.. ...++|..+ .+|.+...+.+ +.+|+...-.|.+.. .+|. .
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y-----r~Psvsv~~~P---vL~Ge~Y~AtC~va~-YYPp~Sv 252 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF-----RRPSLSIRPHA---VLEGEPFGATCVAAN-YYPGDRA 252 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe-----cCCcccccCCc---cccCCCceEEEEeee-ecCCCce
Confidence 359999999999999999977765533 344555555 56666655554 668999999999974 4443 5
Q ss_pred EEEEEECCEEccC
Q psy2166 337 KVEWFHNGKPIFH 349 (805)
Q Consensus 337 ~v~W~~~g~~l~~ 349 (805)
.+.|++||.++..
T Consensus 253 ~lrWf~ng~~V~~ 265 (466)
T PHA03270 253 AFRWFEGGDEVFA 265 (466)
T ss_pred EEEEEeCCccccC
Confidence 7999999998853
No 332
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.79 E-value=0.00017 Score=56.33 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=43.3
Q ss_pred eEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-EE-E-eeCC---EEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 513 SAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RT-F-HDFG---IVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 513 ~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~~-~-~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
.++|.|.+.++-++.+.++|+|||+++..+... .. . .++. .+.|.|.....++...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 368999999754555899999999986443211 11 1 1222 3347776556667789999998754
No 333
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.77 E-value=0.00023 Score=58.02 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=49.5
Q ss_pred CeEEEEEEEeecCCCCeEEEEEECCE----E-----------ccC--CCCeEEEe-eCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 708 EIAHFEASLIPVGDQTMTVEFLYNGK----P-----------IEA--SHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p~~~v~W~~~g~----~-----------l~~--~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
+.++|.|.... ......|+|.|... . +.. .+|+.+.. .....+|.|.+|+.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~-~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPK-TGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCC-CCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEE
Confidence 46899999862 23567899998421 1 111 13444321 123468999999999999999998
Q ss_pred EcC-CccEEEEEEE
Q psy2166 770 TNK-WGQAEISVNL 782 (805)
Q Consensus 770 ~N~-~G~~~~~~~l 782 (805)
.+. .|..+..+.|
T Consensus 80 ~t~P~g~~~~~i~~ 93 (96)
T cd05889 80 VTYPQGSWEKVIEV 93 (96)
T ss_pred EeCCCCCeEEEEEE
Confidence 775 7777766655
No 334
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.77 E-value=0.00019 Score=58.52 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=47.2
Q ss_pred cCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc---eEEEeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 509 KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR---YRTFHDFG---IVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 509 ~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~---~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
..++.++|.|.|.++-++...++|++||+.+..+.. .....++. .+.|.+..-...+...|+|.+.+.....
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~ 89 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF 89 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence 356779999999987666799999999998743211 11112222 2346666433445679999999875443
No 335
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.76 E-value=0.0033 Score=64.23 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=94.7
Q ss_pred EEEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy2166 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP 203 (805)
Q Consensus 124 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (805)
..|+|..++..++|.|.=+..+..+.......++|... .+|
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y---------------------------------------r~P 238 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY---------------------------------------NAP 238 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe---------------------------------------cCC
Confidence 56999999999999998776566555555556665321 233
Q ss_pred ceecccccccccCCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCc-EEEE--EE-c---CeEEEEEcCCC-CcccE
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHR-IRTV--HA-F---GMVVLEILGTK-IEDTG 274 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p-~~~i~W~k~g~~l~~~~~-~~~~--~~-~---~~~~L~i~~~~-~~d~G 274 (805)
.+...+.. +.+|+...-.|.+...-.| ...+.||.||.++..... .... .. + ..++|.+.... .+..-
T Consensus 239 svsv~~~P---vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP 315 (486)
T PHA03273 239 LVDLSVHP---SLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTP 315 (486)
T ss_pred cccccCCc---cccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCC
Confidence 33333332 6799999999998533222 368999999999983222 1111 11 1 24566665543 34445
Q ss_pred EEEEEEEc-CCeeEEE----EEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCC--CcEEEEEECC
Q psy2166 275 VYTCRATN-KWGQAEI----SVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP--ELKVEWFHNG 344 (805)
Q Consensus 275 ~Y~C~~~n-~~g~~~~----~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p--~~~v~W~~~g 344 (805)
..+|.+.= ....... ++.-.|+ .+|.+.... ..| ...|.+. --| ...+.|+.++
T Consensus 316 ~lrC~v~W~rd~vS~~RfsAt~~P~Vy-----~~P~Is~~F------~~G---~AVCtA~--CVP~egV~l~W~v~D 376 (486)
T PHA03273 316 SLRCSIEWYRDEVSFARIAKAGTPSVF-----VAPTVSVTV------EDG---DAVCTAK--CVPSTGVFVSWSVND 376 (486)
T ss_pred CceEEEEEccCCcceeeccccccCccc-----cCCeEEEEE------eCC---EEEEecc--cccCCCeeEEEEccC
Confidence 88999872 2222222 2222222 445544322 222 2347765 444 3789998776
No 336
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.75 E-value=0.00017 Score=59.86 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=49.2
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceE--EEe----cC---cEEEEEEcccccCCCeEEEEE
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK--TTA----DF---GFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~--~~~----~~---~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+++...+..|+.++|.|.+.+.-.+...|+|+|||+++....... ... ++ ..+.|.|..-...+...|.|+
T Consensus 7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~ 86 (102)
T cd05768 7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCV 86 (102)
T ss_pred CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEE
Confidence 333455667899999999997533456889999999876432111 111 12 133566655544566789999
Q ss_pred EEeCC
Q psy2166 143 AWNLA 147 (805)
Q Consensus 143 a~n~~ 147 (805)
+.+..
T Consensus 87 V~H~~ 91 (102)
T cd05768 87 VGHEA 91 (102)
T ss_pred eEeCC
Confidence 98754
No 337
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.74 E-value=0.00026 Score=57.64 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=48.0
Q ss_pred ceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE-EEeeCC----EEEEEEccCCCCCCEEEEE
Q psy2166 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFHDFG----IVILDILYCYEENSGVYEC 571 (805)
Q Consensus 497 ~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~----~~~L~i~~v~~~d~G~Y~C 571 (805)
++.+..+....+..++.++|.|.|.++-++...++|.+||+.+..+.... ...+++ .+.|.|..- +....|+|
T Consensus 2 ~~~v~~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~--~~~~~ysC 79 (96)
T cd07697 2 KPTIFSPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKD--SLGKKFRC 79 (96)
T ss_pred CCeEECCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECch--hCCCeEEE
Confidence 33444444333556788999999998777788999999999875432111 111222 223555432 12345999
Q ss_pred EEEcC
Q psy2166 572 RATNK 576 (805)
Q Consensus 572 ~a~n~ 576 (805)
.+.+.
T Consensus 80 ~V~H~ 84 (96)
T cd07697 80 IYKHE 84 (96)
T ss_pred EEEEC
Confidence 99874
No 338
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.74 E-value=0.00019 Score=62.07 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=48.0
Q ss_pred ccCCCCeEEEEEEEeecCCC------CeEEEEEECC--E---E-c--c---------CCCCeEEE--eeCcEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ------TMTVEFLYNG--K---P-I--E---------ASHRIRTV--HAFGMVVLEILGT 757 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p------~~~v~W~~~g--~---~-l--~---------~~~~~~~~--~~~~~~~L~i~~v 757 (805)
.+.+|+.|+|.|... ..+ ...+.|+|.. . . + . -..|+... ...+.+.|.|.++
T Consensus 10 ~~~~G~~VtL~C~f~--~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l 87 (119)
T cd05712 10 SVQEGLCVLIPCSFS--YPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDA 87 (119)
T ss_pred EEeccccEEEEEEee--CcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccC
Confidence 789999999999875 221 3568999842 1 1 0 0 01344442 2455688999999
Q ss_pred CCCCCEEEEEEEEcC
Q psy2166 758 KIEDTGVYTCRATNK 772 (805)
Q Consensus 758 ~~~d~G~Y~C~a~N~ 772 (805)
+.+|+|.|.|.+...
T Consensus 88 ~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 88 QPEDSGKYFFRVELG 102 (119)
T ss_pred ChhhCeEEEEEEEcC
Confidence 999999999998663
No 339
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.73 E-value=0.00038 Score=56.83 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=44.5
Q ss_pred ecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC---ceEEEecCcEEEEEEcccccCCCeEEEEEEEeCC
Q psy2166 78 LGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS---RFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 78 v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 147 (805)
+..|+.++|.|.+.+.-.+...++|++||+.+..+. ...-..++.........+..++...|.|++.+..
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 347899999999997534456899999999887541 1111222222222222334456779999998764
No 340
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.72 E-value=0.00027 Score=57.64 Aligned_cols=73 Identities=11% Similarity=0.090 Sum_probs=48.0
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeE-EEeeCc----EEEEEEcCCCCCCCEEEEEEEEcCCc--cEEE
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFG----MVVLEILGTKIEDTGVYTCRATNKWG--QAEI 778 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G--~~~~ 778 (805)
......+.|.+. .|+|.+.|+|+++. ....... .....+ .+.|.+.....+|...|+|+|.|..- ....
T Consensus 14 ~~~~~va~C~s~-~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~ 89 (95)
T cd05719 14 GEPVTVATCVSA-NGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRF 89 (95)
T ss_pred CCccEEEEEECC-CCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 345688999996 48999999999971 1111111 111122 34688877778888899999999874 3444
Q ss_pred EEEE
Q psy2166 779 SVNL 782 (805)
Q Consensus 779 ~~~l 782 (805)
+++|
T Consensus 90 ~~~L 93 (95)
T cd05719 90 SVTL 93 (95)
T ss_pred EEEe
Confidence 4444
No 341
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.69 E-value=0.00029 Score=59.49 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=54.8
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCC-ceEEEEECCEecCCCCc---eEEEecCc----EEEEEEcccccCC-
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPN-LKIEWIFNGKPLELGSR---FKTTADFG----FVTLDLTEVYDRD- 135 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~k~g~~i~~~~~---~~~~~~~~----~~~L~I~~~~~~D- 135 (805)
+|.+.+-+++..++.+++.++|.|.+.+. .|. ..|+|+|||+.+..+.. .....+++ .+.|.|......|
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gF-yP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~ 80 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGF-YPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNP 80 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeE-eCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccC
Confidence 35555555555666678899999999975 444 69999999998875432 11222112 3356776655444
Q ss_pred CeEEEEEEEeCCee
Q psy2166 136 QGIYTCRAWNLAGE 149 (805)
Q Consensus 136 ~G~Y~C~a~n~~g~ 149 (805)
...|.|.+.+....
T Consensus 81 ~~~ytC~V~H~g~~ 94 (115)
T cd05769 81 RNTFTCIVQFYGGT 94 (115)
T ss_pred CCeEEEEEEEeCCc
Confidence 56999999876433
No 342
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.69 E-value=0.00018 Score=58.57 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=46.7
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-EEEeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFG----IVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
|+.+.|+|.+.+ +.|.+.++|+.++..+...... ....+++ .+.|.+..-..++...++|.|.|..-..
T Consensus 14 ~~~~~~~C~s~~-~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSG-GYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEE-EBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCC-eECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 789999999987 8999999999999887211111 1111121 3457777544556779999999876543
No 343
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.67 E-value=0.00028 Score=57.37 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=42.9
Q ss_pred cCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe-EE-EeeCcE----EEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RT-VHAFGM----VVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 704 v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~~-~~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
...|+.++|.|.+.++-.+...|+|++||+.+..+... .. -+.+++ ..|.|.. ++...|+|.+...
T Consensus 12 ~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~ 83 (94)
T cd05767 12 VELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHW 83 (94)
T ss_pred ccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeC
Confidence 34467789999999554456799999999987653211 11 122232 3465543 4566999999775
No 344
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.67 E-value=0.00026 Score=55.24 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=43.1
Q ss_pred eEEEEEEEeecCCCCeEEEEEECCEEccCCCC-eEEE-eeCc----EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 709 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHR-IRTV-HAFG----MVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 709 ~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~-~~~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
.++|.|.+.++-.+...|+|+|||+++..+.. .... ..++ .+.|.|.....++...|+|+|.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 37899999943334479999999997543311 1111 1222 2457777767788889999998754
No 345
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.67 E-value=0.00043 Score=56.03 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=43.5
Q ss_pred cCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC-eEEE-eeCcE----EEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR-IRTV-HAFGM----VVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 704 v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~-~~~~-~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
+..|...+|.|.+.++-.+...|+|+|||+.+. +.. .... +.+++ ..|.| ...+.-.|+|++...
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~---~~~~~~~ysC~V~H~ 82 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEF---TPTKGDEYACRVRHN 82 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEE---CCCCCCeEEEEEEEC
Confidence 455778899999996555667999999999886 321 1111 22232 23444 456777899999774
No 346
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.65 E-value=0.00034 Score=56.94 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=47.8
Q ss_pred CCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC--eEEEeeCc----EEEEEEcCCCCCCCEEEEEEEEcCCccEEE
Q psy2166 705 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR--IRTVHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQAEI 778 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 778 (805)
..++.++|.|.+.++-.+...|+|++||+.+..+.. .....+++ .+.|.|..-...+...|+|.|.+.....+.
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~~ 91 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFED 91 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeeee
Confidence 345679999999954444579999999998743311 01122223 234667655555678999999887654433
No 347
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.64 E-value=0.00015 Score=57.88 Aligned_cols=61 Identities=18% Similarity=0.321 Sum_probs=42.6
Q ss_pred cEEEEEEEecCCCCCceEEEEECCE--e---c-------------CCCCceEEEec--CcEEEEEEcccccCCCeEEEEE
Q psy2166 83 PLHLEAQVEPKNDPNLKIEWIFNGK--P---L-------------ELGSRFKTTAD--FGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 83 ~v~L~C~~~~~~~p~~~v~W~k~g~--~---i-------------~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+++|.|.+.....+...+.|++... . + ...+|+.+..+ .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999984322224799998431 0 1 11346665554 5778999999999999999996
Q ss_pred E
Q psy2166 143 A 143 (805)
Q Consensus 143 a 143 (805)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 348
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.63 E-value=0.00041 Score=59.60 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=48.3
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEEC--C-EE--c------------c--CCCCeEEEeeC--cEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--G-KP--I------------E--ASHRIRTVHAF--GMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~~--g-~~--l------------~--~~~~~~~~~~~--~~~~L~i~~v~~ 759 (805)
.+.+|++++|.|... +.- ...+.|||- | .+ | . -.+|+....+. ..+.|+|.++..
T Consensus 8 ~v~~G~~vtL~C~~~--~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (117)
T cd04981 8 LVKPGQSLKLSCKAS--GFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP 85 (117)
T ss_pred EEcCCCCEEEEEEEe--CCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence 789999999999986 432 457999982 2 11 1 0 12456555443 456899999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|+|.|.|.+..
T Consensus 86 ~Dsa~YyCa~~~ 97 (117)
T cd04981 86 EDTAVYYCARGL 97 (117)
T ss_pred HHCEEEEEEEEc
Confidence 999999999875
No 349
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.61 E-value=0.0083 Score=60.25 Aligned_cols=126 Identities=10% Similarity=0.059 Sum_probs=74.2
Q ss_pred CceEEEecC--cEEEEEEcccccCCCeEEEEEEEeCCeeE--EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhc
Q psy2166 113 SRFKTTADF--GFVTLDLTEVYDRDQGIYTCRAWNLAGET--FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLR 188 (805)
Q Consensus 113 ~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 188 (805)
.+|.+-..+ ....|.|.++...|+|.|+-...+..... .....+.+..
T Consensus 194 ~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~---------------------------- 245 (490)
T PHA03271 194 NKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ---------------------------- 245 (490)
T ss_pred ceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe----------------------------
Confidence 345443332 34579999999999997766555543332 2233333332
Q ss_pred CCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEEEEE---E-----cC
Q psy2166 189 RQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHRIRTVH---A-----FG 259 (805)
Q Consensus 189 ~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p-~~~i~W~k~g~~l~~~~~~~~~~---~-----~~ 259 (805)
.||.+...++. +.+|+...-.|.+...-.| ...++||.||.++.......... + ..
T Consensus 246 ------------RPPsVsV~a~P---VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~ 310 (490)
T PHA03271 246 ------------RPASVDVLAPP---VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATL 310 (490)
T ss_pred ------------cCCCccccCCc---cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeE
Confidence 33444443333 6699999999998533222 36899999999886554222211 1 11
Q ss_pred eEEEEEcCCCCcccEEEEEEEE
Q psy2166 260 MVVLEILGTKIEDTGVYTCRAT 281 (805)
Q Consensus 260 ~~~L~i~~~~~~d~G~Y~C~~~ 281 (805)
.++|.+.+...+..=..+|.+.
T Consensus 311 VSTltl~a~~~~~PPsLRCeV~ 332 (490)
T PHA03271 311 VSTITLGNSGIDPPPKISCLVA 332 (490)
T ss_pred EEEEEcccccCCCCCCceEEEE
Confidence 3455554444344458999987
No 350
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.61 E-value=0.00031 Score=57.48 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=44.9
Q ss_pred cccCCCeEEEEEEEeeC-CCCCcEEEEEECCEEc-cCCCc-eEEEeeCCE---EEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 507 QLKEGQSAHFEARLTPV-TDPDLVVEWFYNGKKL-PHGHR-YRTFHDFGI---VILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~-g~p~~~v~W~~~g~~l-~~~~~-~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
.+..|+.++|.|.+.++ -++...++|+|||... ..... .....++.. +.|.+..-...+.-.|+|.+.+..-
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 36779999999999987 6778899999987433 21111 111122222 2355553322344589999988653
No 351
>KOG0613|consensus
Probab=97.61 E-value=0.00029 Score=80.98 Aligned_cols=225 Identities=12% Similarity=0.008 Sum_probs=146.3
Q ss_pred CeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeee
Q psy2166 512 QSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 591 (805)
..+.+.|.+ |.|.+...|+.+|+.+..+....+......+.+.|..+-..+.|.|.-.+-|..|....
T Consensus 206 ~~v~~v~s~---gqp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~--------- 273 (1205)
T KOG0613|consen 206 SRVRAVVSA---GQPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK--------- 273 (1205)
T ss_pred eeEEEEEec---CCCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc---------
Confidence 456666766 78999999999999998776665533333333555544456667666655554444332
Q ss_pred eeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeecccccccc
Q psy2166 592 TNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILES 671 (805)
Q Consensus 592 ~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~ 671 (805)
. . +...+.|.+....+.+.|+|...+..++....+...+..... .
T Consensus 274 -~------~------------------------~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~----~ 318 (1205)
T KOG0613|consen 274 -H------K------------------------GGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKG----K 318 (1205)
T ss_pred -c------C------------------------CCccccccccCCccccceeeecccCCcccceeeeEEeecccc----c
Confidence 0 0 111244556667778888888888888877666544432211 1
Q ss_pred ccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeE-EEEEECCEEccCCC--CeEEEeeCc
Q psy2166 672 QLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT-VEFLYNGKPIEASH--RIRTVHAFG 748 (805)
Q Consensus 672 ~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~-v~W~~~g~~l~~~~--~~~~~~~~~ 748 (805)
..|+...... ......|.+.....+. .+..+..+.+.|... +.+.|. +.|++++.....+. .+.+.+...
T Consensus 319 ~~p~~~~~aa----a~~~~~~v~~~~~~~v-~a~d~~~v~m~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~t 391 (1205)
T KOG0613|consen 319 PGPESLQAAA----ARPPEVPVGLVRNLSV-TARDNTLVEMPTALS--GTQKPDEAQGYHGEEVSSESLGALPCPVGTVT 391 (1205)
T ss_pred cCchhhhhhc----cCCcccccccccccee-ccccCcceeeccccc--CCcCCchheeeccccccccccccccccccccc
Confidence 1121100000 0001333444444555 788899999999998 999987 99999887665554 344455555
Q ss_pred EEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEeCCC
Q psy2166 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790 (805)
Q Consensus 749 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 790 (805)
...+.|..+...+.+.|.|.|.|..|........+|....+.
T Consensus 392 s~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~g 433 (1205)
T KOG0613|consen 392 SHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPG 433 (1205)
T ss_pred CcchhhhhcCcccccccccceeccCCcccccchhhcccccCC
Confidence 667899999999999999999999998888888888765443
No 352
>KOG0613|consensus
Probab=97.59 E-value=0.00079 Score=77.49 Aligned_cols=405 Identities=13% Similarity=0.052 Sum_probs=221.2
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l 293 (805)
...++....|.|.+ ...+-+-+.|+.++...... + .+.....|.+....+.+.|+|...+..+.....+..
T Consensus 240 ~t~e~s~~~i~~~l--~~~~G~~~~~~~~~l~e~~~------~-~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~ 310 (1205)
T KOG0613|consen 240 VTLEASDRKIQLTL--RAPRGPYSAHILGYLIEQRK------H-KGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTE 310 (1205)
T ss_pred cccchhheeeeEEe--ecCCCchHHHHhcchhhhcc------c-CCCccccccccCCccccceeeecccCCcccceeeeE
Confidence 35677888899988 45666677887765433322 1 122356677777888889999988877665544444
Q ss_pred EEeccCC-----------CCCCeEEecCC--CcccccCCCeEEEEEEEeecCCCCcE-EEEEECCEEccCCC--ceEEEE
Q psy2166 294 ECVDKSK-----------GQPPKFTSHIK--SLEGLKDGDSAHFECTLTPVNDPELK-VEWFHNGKPIFHKN--RVKMVS 357 (805)
Q Consensus 294 ~v~~~~~-----------~~~p~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~p~~~-v~W~~~g~~l~~~~--~~~~~~ 357 (805)
.+..... ..++....... ....+..+..+++.|... +.+.+. +.|++++.....+. .+.+..
T Consensus 311 ~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1205)
T KOG0613|consen 311 EAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALS--GTQKPDEAQGYHGEEVSSESLGALPCPVG 388 (1205)
T ss_pred EeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccccc--CCcCCchheeecccccccccccccccccc
Confidence 3322110 01121111111 112356678899999987 666666 99999877665443 222222
Q ss_pred eCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCC
Q psy2166 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAP 437 (805)
Q Consensus 358 ~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (805)
......+.|..+...+.+.|.|.|.|..|.........|.....
T Consensus 389 ~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~------------------------------------ 432 (1205)
T KOG0613|consen 389 TVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMP------------------------------------ 432 (1205)
T ss_pred cccCcchhhhhcCcccccccccceeccCCcccccchhhcccccC------------------------------------
Confidence 33334577888999999999999999998876655444432111
Q ss_pred ceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEE
Q psy2166 438 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 517 (805)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~ 517 (805)
...++.+.....-...+..-+.+.+.
T Consensus 433 ------------------------------------------------------gt~~~~~kk~~~~t~~L~~~~~i~~~ 458 (1205)
T KOG0613|consen 433 ------------------------------------------------------GTQPPKFKKDVSTTDLLTVKDEITVR 458 (1205)
T ss_pred ------------------------------------------------------CCCCccccccccccccccCCcccccc
Confidence 11233333332222223444888999
Q ss_pred EEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce--EEEEEEEEeeeee--
Q psy2166 518 ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD--VTKASLKCVSKTN-- 593 (805)
Q Consensus 518 C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~-- 593 (805)
|.+..+..|...++|++++-+... +......+....|.+.-....|.|.|.-......|.. .....+.......
T Consensus 459 ~~~~s~~~~~~~~tt~~~~~~~s~--~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~~~~s~a~~ 536 (1205)
T KOG0613|consen 459 TPDSSTSMPMTTVTTIKDGLPLSD--RSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLPAAKSSAPK 536 (1205)
T ss_pred cCCCCccccceeEeeccCCccccc--ccccccccchhhheeeccCCCccchhhhhhhccCCCCCCcccccccccccCCcc
Confidence 999854444666777777655432 2222333444557777778899999976665444433 2222232222211
Q ss_pred eeec----CCCCeEEEEECCEEcc-------------CCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEE
Q psy2166 594 LILE----SQLPEVEWFYNGKKLP-------------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656 (805)
Q Consensus 594 ~~~~----~~~p~v~W~~~g~~l~-------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 656 (805)
.+.. ...|.+.|..-..... ...+.-....+ .++.+-.......+..+-.+.+..|....+
T Consensus 537 ~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~qlg~~~~~~~r~g--tt~t~~~~~p~~~~~~t~~~k~~~gE~~ps 614 (1205)
T KOG0613|consen 537 PIHTQENQPGTPTLEWEPKPAEASKVSLHYASATRQLGVWRVPESRPG--TTETIGSILPGHEYHVTIKAKNELGESRPS 614 (1205)
T ss_pred cccccccCCCCcccccCCCcccccccchhhhhhhhhccCCcccccCCC--cccccccccccccceeehhhhhcccccCCC
Confidence 1111 1123555553221111 00011111111 234455555666666666666666655433
Q ss_pred E---EEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECC
Q psy2166 657 A---SLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 732 (805)
Q Consensus 657 ~---~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g 732 (805)
. .+.-.+++. .+.-....+..........+.+......+ ....+......|.+. +.|...+.|.+..
T Consensus 615 ~~~~t~k~~D~~q------~~~~~~~~~~~ks~~~~~k~s~l~~l~k~-~~~a~~~~~~~~~vd--~~~K~kv~~~~~e 684 (1205)
T KOG0613|consen 615 SKSTTLKWQDPSQ------LKRRPVSEPSYKSPDSSQKPSKLVGLSKM-DLPANLESQVKPTVV--SSPKKKVKKKKQE 684 (1205)
T ss_pred CCCcccccccccc------ccccccCCccccccccccchhcccchhhc-cccccceeeeecccc--CCccccccccccc
Confidence 1 111111110 00001112223334445556666666666 677777778888887 8899999998843
No 353
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.59 E-value=0.013 Score=58.99 Aligned_cols=82 Identities=15% Similarity=0.282 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCcccEEEEEEEEcCCee--EEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC--
Q psy2166 260 MVVLEILGTKIEDTGVYTCRATNKWGQ--AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE-- 335 (805)
Q Consensus 260 ~~~L~i~~~~~~d~G~Y~C~~~n~~g~--~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~-- 335 (805)
...|.|+++...++|.|.....+.... ....+.+.+.. -||.+...+.+ +..|+...-.|.+.. -+|.
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~----RPPsVsV~a~P---VL~Ge~YkAtC~vAn-YYPP~S 277 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ----RPASVDVLAPP---VLSGENYKASCIVRH-FYPPGS 277 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe----cCCCccccCCc---cccCCCceEEEEeee-ecCCCc
Confidence 357999999999999775555543322 24445555544 46666655554 568999999999975 3443
Q ss_pred cEEEEEECCEEccC
Q psy2166 336 LKVEWFHNGKPIFH 349 (805)
Q Consensus 336 ~~v~W~~~g~~l~~ 349 (805)
..+.|++||.++..
T Consensus 278 vrlrWf~nG~~V~~ 291 (490)
T PHA03271 278 VYVSWRQNGNIATP 291 (490)
T ss_pred eEEEEEeCCccccC
Confidence 56999999998753
No 354
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.57 E-value=0.00065 Score=55.37 Aligned_cols=74 Identities=14% Similarity=0.242 Sum_probs=48.8
Q ss_pred CcEEEEEEEecCCCCCceEEEEECCE----ecC-------------CCCceEEEe-cCcEEEEEEcccccCCCeEEEEEE
Q psy2166 82 QPLHLEAQVEPKNDPNLKIEWIFNGK----PLE-------------LGSRFKTTA-DFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 82 ~~v~L~C~~~~~~~p~~~v~W~k~g~----~i~-------------~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
++++|.|.... ......|+|.|-.. .+. ..+|..... .....+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~-~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPK-TGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCC-CCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEE
Confidence 47899999874 34577899998421 111 012443321 123458999999999999999999
Q ss_pred Ee-CCeeEEEEEEE
Q psy2166 144 WN-LAGETFTSTTI 156 (805)
Q Consensus 144 ~n-~~g~~~~~~~l 156 (805)
.. ..|..+..+.|
T Consensus 80 ~t~P~g~~~~~i~~ 93 (96)
T cd05889 80 VTYPQGSWEKVIEV 93 (96)
T ss_pred EeCCCCCeEEEEEE
Confidence 65 46666555443
No 355
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.56 E-value=0.00063 Score=55.67 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=46.2
Q ss_pred CceecCCCcEEEEEEEecC-CCCCceEEEEECCEec-CCCC-ceEEEecCc---EEEEEEcccccCCCeEEEEEEEeCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPK-NDPNLKIEWIFNGKPL-ELGS-RFKTTADFG---FVTLDLTEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~k~g~~i-~~~~-~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~~ 147 (805)
...+..|+.++|.|.+.+. -.+...|+|+|||+.. .... ......++. .+.|.+.....++.-.|.|.+.+..
T Consensus 8 ~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 8 PKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred HHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 4466779999999999976 4567789999987433 2110 111111221 2256666555445668999998864
No 356
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.54 E-value=0.00041 Score=55.47 Aligned_cols=69 Identities=22% Similarity=0.334 Sum_probs=48.6
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE-E-eeCC----EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT-F-HDFG----IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~-~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
...++.++|.|.+.++-+....|+|++||+.+........ . ..++ .+.|.+. ..+...|+|.+.+....
T Consensus 5 ~~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 5 EELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp HHSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred ccCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 3459999999999987677889999999999876533222 2 2233 2235555 56666999999886543
No 357
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.53 E-value=0.00044 Score=53.10 Aligned_cols=62 Identities=27% Similarity=0.383 Sum_probs=46.6
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCce----EEEeeCCEEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY----RTFHDFGIVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
++|.|.+. +.+.+.+.|++++......... ..........|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLAS--GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEec--CCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 47899998 5788899999998876543211 11122345579999999999999999998876
No 358
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.53 E-value=0.0071 Score=62.04 Aligned_cols=168 Identities=18% Similarity=0.221 Sum_probs=91.0
Q ss_pred cEEEEEEcccccCCCeEEEEEEEeC-CeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCC
Q psy2166 122 GFVTLDLTEVYDRDQGIYTCRAWNL-AGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDG 200 (805)
Q Consensus 122 ~~~~L~I~~~~~~D~G~Y~C~a~n~-~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (805)
+...|.|.+++..++|.|.=++.+. .+.......++|..-
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y--------------------------------------- 327 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY--------------------------------------- 327 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe---------------------------------------
Confidence 4557999999999999998666533 233333334443321
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEE--EEEEcC----eEEEEEcCCCCcc-
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHRIR--TVHAFG----MVVLEILGTKIED- 272 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p-~~~i~W~k~g~~l~~~~~~~--~~~~~~----~~~L~i~~~~~~d- 272 (805)
.+|.+...+.. +.+|+...-.|.+...-.| ...++||.||.++....... ....+| .++|.+......|
T Consensus 328 r~PsVsV~p~P---VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~ 404 (566)
T PHA03269 328 KRPNITVIGDP---VLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADY 404 (566)
T ss_pred cCCCccccCCc---cccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCC
Confidence 22333333322 6799999999998533222 36899999999887532111 111222 3455553222222
Q ss_pred -cEEEEEEEEc-CCeeEE----EEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC--cEEEEEECC
Q psy2166 273 -TGVYTCRATN-KWGQAE----ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE--LKVEWFHNG 344 (805)
Q Consensus 273 -~G~Y~C~~~n-~~g~~~----~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~--~~v~W~~~g 344 (805)
.-..+|.+.= ..+... .++.-.|+ .+|.+... +..| ...|.+. --|. ..+.|+.++
T Consensus 405 ~PPsLrCeV~W~RDsVS~tRfnAaatP~VY-----~~PtISm~------FedG---~AVCtA~--CVP~~~V~l~WlVgD 468 (566)
T PHA03269 405 PPPAIQCNVLWIRDGVSHMKYSAAVTPDVY-----PFPNVSIE------IIDG---HIVCLAK--CVPRGVVHFNWWIND 468 (566)
T ss_pred CCCCceEEEEEccCCchheecccccCCccc-----cCCeEEEE------EeCC---EEEEecc--cccCCCceEEEEecC
Confidence 3466999872 222222 22222222 44554432 2222 2346664 3433 589999877
Q ss_pred EEc
Q psy2166 345 KPI 347 (805)
Q Consensus 345 ~~l 347 (805)
...
T Consensus 469 ~p~ 471 (566)
T PHA03269 469 IPI 471 (566)
T ss_pred CCC
Confidence 664
No 359
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.53 E-value=0.00038 Score=55.42 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=41.8
Q ss_pred eEEEEEEEeecCCCC--eEEEEEECCE-----Ec-------------cCCCCeEEEee--CcEEEEEEcCCCCCCCEEEE
Q psy2166 709 IAHFEASLIPVGDQT--MTVEFLYNGK-----PI-------------EASHRIRTVHA--FGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 709 ~~~l~C~~~~~g~p~--~~v~W~~~g~-----~l-------------~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~ 766 (805)
++.|.|.+. .... ..+.|++... .+ ...+|+.+... .+...|+|.+++.+|+|.|.
T Consensus 1 ~v~l~C~~~--~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 78 (81)
T smart00406 1 SVTLSCKAS--GFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYY 78 (81)
T ss_pred CEEEEEEEe--ccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEE
Confidence 478999998 4433 4899998431 01 11245555544 56789999999999999999
Q ss_pred EEE
Q psy2166 767 CRA 769 (805)
Q Consensus 767 C~a 769 (805)
|.+
T Consensus 79 C~v 81 (81)
T smart00406 79 CAV 81 (81)
T ss_pred EcC
Confidence 963
No 360
>KOG1480|consensus
Probab=97.52 E-value=3e-05 Score=83.07 Aligned_cols=89 Identities=21% Similarity=0.253 Sum_probs=71.7
Q ss_pred ecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCc-
Q psy2166 696 SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG- 774 (805)
Q Consensus 696 ~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G- 774 (805)
..+.-. .|..+...++.|... .+.|...++|+|++..+.+...+....+.+ |+|..++..|.|+|+|+|.|-++
T Consensus 134 ~~p~~q-~V~~~s~~~l~cr~p-e~~paae~~w~k~e~~~~pd~n~~~~~d~~---li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 134 QSPVGQ-EVQEETTLQLPCRPP-EGDPKAEVEWLKNEVVIDPDANVIRASDHN---LIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred cChhhh-eecccccccccccCc-ccchhhhhhccccCCCCCccccchhhhcCC---ccccchhhhhcccceeeeehhhcc
Confidence 334444 788899999999876 588999999999999988866666555554 99999999999999999999998
Q ss_pred cEEEEEEEEEEEeCC
Q psy2166 775 QAEISVNLECVVWSP 789 (805)
Q Consensus 775 ~~~~~~~l~V~~~~~ 789 (805)
.-..++++.|.+..-
T Consensus 209 r~~~~~~v~vyv~gg 223 (909)
T KOG1480|consen 209 RKSDPATVQVYVNGG 223 (909)
T ss_pred ccccceEEEEEEcCc
Confidence 666677777777543
No 361
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.51 E-value=0.00037 Score=56.72 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=50.2
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCC-CCCcEEEEEECCEEccCC-CceEEEeeCCEE---EEEEccCCCCCCEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHG-HRYRTFHDFGIV---ILDILYCYEENSGVY 569 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g-~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~---~L~i~~v~~~d~G~Y 569 (805)
.|.+.+.++....+..+..++|.|.+.++- .....|+|.+||.. ... .......++.++ .|.|..-.......|
T Consensus 3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~y 81 (99)
T cd04986 3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPF 81 (99)
T ss_pred CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeE
Confidence 456655555444466789999999999765 45789999999875 111 011111233333 455542222233479
Q ss_pred EEEEEcCCc
Q psy2166 570 ECRATNKYG 578 (805)
Q Consensus 570 ~C~a~n~~g 578 (805)
+|.+.+...
T Consensus 82 tC~V~H~~l 90 (99)
T cd04986 82 ACTVTHPEG 90 (99)
T ss_pred EEEEECCCc
Confidence 999998754
No 362
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.41 E-value=0.0006 Score=55.15 Aligned_cols=70 Identities=9% Similarity=-0.022 Sum_probs=48.7
Q ss_pred ccCCCCeEEE-EEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 703 NLSEGEIAHF-EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 703 ~v~~G~~~~l-~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
.+.+|+.+.+ .|.+. .|.|++.|+|+.+..... ........++. .+.|.+..-+.+|.-.++|.+.+..=
T Consensus 12 ~~~~g~~~~vA~C~sa-~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 12 LIDGGNGTTLAACCAA-EGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred EeecCcceeEEEEEcc-CCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 6789999999 99987 589999999998743221 11111111111 23577877778888999999998843
No 363
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.41 E-value=0.0004 Score=50.79 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=44.3
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
..+.|.|.|.+. .+|+|++ |..+.... ..+|.|.++..|-.|.|.|.++| ...+..|.|.
T Consensus 5 ~~~~V~L~C~~~------tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy 64 (69)
T cd07691 5 SEGKVFLKCNGA------TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY 64 (69)
T ss_pred cCceEEEEecCC------CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence 356899999742 3599999 55443321 12699999999999999999988 4455667776
Q ss_pred E
Q psy2166 786 V 786 (805)
Q Consensus 786 ~ 786 (805)
+
T Consensus 65 Y 65 (69)
T cd07691 65 Y 65 (69)
T ss_pred E
Confidence 5
No 364
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.37 E-value=0.0014 Score=53.45 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=44.0
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCce-EEEecCcE----EEEEEcccccCCCeEEEEEEEeC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF-KTTADFGF----VTLDLTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~-~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~ 146 (805)
..++..+..++|.|.+.+.-.+...|+|+|||+.+..+... ....+++. +.|.|..-. ....|+|.+.+.
T Consensus 10 ~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 10 KKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred HHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 34556678899999999754457789999999987644211 11112212 245554432 234599999874
No 365
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.29 E-value=0.0016 Score=53.15 Aligned_cols=67 Identities=9% Similarity=0.080 Sum_probs=43.5
Q ss_pred CCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEe-eCC---EEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFH-DFG---IVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 510 ~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~-~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
.++.++|.|.+.++-++...|+|+|||+. ..+.. ..... ++. .+.|.+..........|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 56779999999987677889999999998 33211 01122 233 2235555432223568999998864
No 366
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.28 E-value=0.0016 Score=52.95 Aligned_cols=73 Identities=7% Similarity=-0.039 Sum_probs=47.4
Q ss_pred CeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 708 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
....+.|.+. .|.|.+.|+|+++...... .......++. .+.|.+..-..+|+..|+|+|.|..-.......+
T Consensus 16 ~~~va~C~s~-~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSA-NGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcC-CCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 4589999887 5899999999998211100 0111112222 3468887777888889999999987544444433
No 367
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.27 E-value=0.0023 Score=52.22 Aligned_cols=68 Identities=9% Similarity=0.042 Sum_probs=43.6
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE-Ee-eCC---EEEEEEccCCCCCCEEEEEEEEcCCcceEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT-FH-DFG---IVILDILYCYEENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~-~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 582 (805)
.....+.|.+.+ |+|.++|+|+++ +........ .. ++. .+.|.+.....+|...|+|.+.|..-....
T Consensus 15 ~~~~va~C~s~~-gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~ 87 (95)
T cd05719 15 EPVTVATCVSAN-GKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQ 87 (95)
T ss_pred CccEEEEEECCC-CcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence 456789999986 899999999997 211111111 11 121 346777655555566999999998754433
No 368
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.27 E-value=0.0011 Score=53.02 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=47.3
Q ss_pred cCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-E-eeCcE----EEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-V-HAFGM----VVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 704 v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~-~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
...++.++|.|.+.++..+...|+|++||+.+........ . ..++. +.|.+. .++...|+|++.+...
T Consensus 5 ~~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 5 EELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp HHSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred ccCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 3459999999999965555568999999998876543221 2 23443 346665 5566699999988654
No 369
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.19 E-value=0.0015 Score=52.80 Aligned_cols=74 Identities=9% Similarity=0.015 Sum_probs=47.5
Q ss_pred CCcccccCCCeEEE-EEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCC---EEEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 503 SDVTQLKEGQSAHF-EARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG---IVILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 503 ~~~~~v~~G~~v~L-~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
.....+.+|+.+.+ .|.+.+ |+|.++|+|+.+..... ........++. .+.|.+.....+|.-.++|.+.+..-
T Consensus 8 ~~~~~~~~g~~~~vA~C~sa~-gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 8 GPSLLIDGGNGTTLAACCAAE-GRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred CCeeEeecCcceeEEEEEccC-CccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 33344789999999 999987 99999999998732221 10111111121 23466665455566699999998754
No 370
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.16 E-value=0.0007 Score=49.30 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=36.7
Q ss_pred CCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 705 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
..|.+|+|+|... +.. +.|++|+..+..+.. .+.+.+-. ++.|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~--~~~---i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLS--GDD---IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCC--CCC---ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCC
Confidence 4589999999865 222 999999976655322 24444555 899999999965
No 371
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.13 E-value=0.0037 Score=51.92 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=50.1
Q ss_pred CceecCCCcEEEEEEEecCCCCC-ceEEEEEC--CEec--------------CCCCceEEEec--CcEEEEEEcccccCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPN-LKIEWIFN--GKPL--------------ELGSRFKTTAD--FGFVTLDLTEVYDRD 135 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~k~--g~~i--------------~~~~~~~~~~~--~~~~~L~I~~~~~~D 135 (805)
...+..|..++|.|++++..... ..+.|+|. | .+ ...+|+..+.+ +...+|.|.+++.+|
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 45788899999999998655555 67899983 3 21 01234444433 467899999999999
Q ss_pred CeEEEEEE
Q psy2166 136 QGIYTCRA 143 (805)
Q Consensus 136 ~G~Y~C~a 143 (805)
++.|.|..
T Consensus 86 Ta~Y~Ca~ 93 (115)
T cd05721 86 TDIYFCKI 93 (115)
T ss_pred CeEEEEEe
Confidence 99999986
No 372
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.13 E-value=0.0034 Score=52.11 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=47.7
Q ss_pred ccCCCCeEEEEEEEeecCCCC-eEEEEEEC--C------------EEc-cCCCCeEE--EeeCcEEEEEEcCCCCCCCEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT-MTVEFLYN--G------------KPI-EASHRIRT--VHAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~-~~v~W~~~--g------------~~l-~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~ 764 (805)
.+.+|+.++|.|.+.+.+... -.+.|+|. | ... ...+++.+ ..+.....|+|.+++.+|++.
T Consensus 9 lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~ 88 (115)
T cd05721 9 LASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDI 88 (115)
T ss_pred EEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeE
Confidence 688899999999998444455 67899982 2 111 11234433 333557899999999999999
Q ss_pred EEEEE
Q psy2166 765 YTCRA 769 (805)
Q Consensus 765 Y~C~a 769 (805)
|.|..
T Consensus 89 Y~Ca~ 93 (115)
T cd05721 89 YFCKI 93 (115)
T ss_pred EEEEe
Confidence 99975
No 373
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.10 E-value=0.00089 Score=48.79 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=36.4
Q ss_pred cCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeC
Q psy2166 79 GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 79 ~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 146 (805)
..|..|+|+|... +. .+.|++|+..+..... .+.+.+-. ++.|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~--~~---~i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLS--GD---DIKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCC--CC---CceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 4699999999865 12 3999999976654322 23333444 8899999999643
No 374
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.08 E-value=0.0043 Score=50.57 Aligned_cols=81 Identities=10% Similarity=-0.014 Sum_probs=48.3
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCC-CCCceEEEEECCEecCCC-CceEEEecCc---EEEEEEcccccCCCeEEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKN-DPNLKIEWIFNGKPLELG-SRFKTTADFG---FVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~-~p~~~v~W~k~g~~i~~~-~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~ 140 (805)
|.+.+-++....+..+..++|.|.+.+.- .....|+|.+||+. ... .......++. .+.|.|..-.-.-...|+
T Consensus 4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~yt 82 (99)
T cd04986 4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFA 82 (99)
T ss_pred CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEE
Confidence 44434344445666899999999999753 33678999999875 110 0001111221 225666544444455799
Q ss_pred EEEEeCC
Q psy2166 141 CRAWNLA 147 (805)
Q Consensus 141 C~a~n~~ 147 (805)
|++.+..
T Consensus 83 C~V~H~~ 89 (99)
T cd04986 83 CTVTHPE 89 (99)
T ss_pred EEEECCC
Confidence 9998764
No 375
>PHA02982 hypothetical protein; Provisional
Probab=97.05 E-value=0.0034 Score=56.63 Aligned_cols=84 Identities=13% Similarity=0.196 Sum_probs=61.6
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECC-EecC----------C--------CCceEEEecCcEEEEEEcccccCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG-KPLE----------L--------GSRFKTTADFGFVTLDLTEVYDRD 135 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g-~~i~----------~--------~~~~~~~~~~~~~~L~I~~~~~~D 135 (805)
++....|+.|.|.|... .+.......|+++. ..+. . ...+.++-++..++|+|.++..+.
T Consensus 33 dv~a~vd~~V~L~C~~~-~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 33 DVNATVDQEVKLQCLFK-DADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhccCCCcEEEEecCC-CcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 45667899999999954 34556678999853 2332 1 234667778889999999999999
Q ss_pred CeEEEEEEEeCCeeE-EEEEEEEEe
Q psy2166 136 QGIYTCRAWNLAGET-FTSTTIYCS 159 (805)
Q Consensus 136 ~G~Y~C~a~n~~g~~-~~~~~l~V~ 159 (805)
.|.|.|.+....+.. .....+.|+
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~ 136 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQ 136 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEe
Confidence 999999999866444 335556664
No 376
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.04 E-value=0.0038 Score=50.98 Aligned_cols=67 Identities=4% Similarity=0.044 Sum_probs=41.5
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC--eEEEe-eCc---EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR--IRTVH-AFG---MVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~-~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
.++.++|.|.+.++-.+...|+|+|||+. ..+.. -.+.. ++. .+.|+|........-.|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46779999999955445678999999998 33211 01122 222 2345554433223568999998754
No 377
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.97 E-value=0.0048 Score=50.19 Aligned_cols=72 Identities=8% Similarity=0.002 Sum_probs=44.8
Q ss_pred CeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 512 QSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG---IVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
..+.++|.+.+ |+|.++|+|+++...... .......++. .+.|.+.....+|...|+|+|.|..-.....+.
T Consensus 16 ~~~va~C~s~~-gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~ 90 (95)
T cd07703 16 PVPVAKCVSAN-GRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLP 90 (95)
T ss_pred ccEEEEEEcCC-CCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence 45789999987 899999999987211100 0111111222 345777654555566999999998755444433
No 378
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.89 E-value=0.005 Score=49.43 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=43.3
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEECCEEccCCCCeEE----EeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYNGKPIEASHRIRT----VHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~g~~l~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
.+.+|..+++.|.+. .+.|. ..|.|+++...+.......- ........+++...+.||.-.|+|.|.
T Consensus 11 ~l~~G~~vtv~C~v~-~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~ 83 (99)
T cd07689 11 PLEEGKPVTVKCEVP-DVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAK 83 (99)
T ss_pred cccCCceEEEEEEec-CcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEE
Confidence 467899999999997 35676 78999997776654432110 001122456665544445559999993
No 379
>KOG4597|consensus
Probab=96.85 E-value=0.0021 Score=65.48 Aligned_cols=93 Identities=17% Similarity=0.093 Sum_probs=71.6
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEE---CCEE--ccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY---NGKP--IEASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~---~g~~--l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
|.+..-+..+ .+..|+++.+.|-+. |.|.+.|+|.+ |++. +.++..+..-.......|.|-+....|+|+|+
T Consensus 197 c~l~~cpa~w-~vg~wetcS~tCg~~--G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~t 273 (560)
T KOG4597|consen 197 CALVDCPAEW-FVGDWETCSSTCGVQ--GRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYT 273 (560)
T ss_pred cccccCcchh-hcccchhhccccccc--CCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCcee
Confidence 6777778888 899999999999998 99999999987 4432 22221111111112346999999999999999
Q ss_pred EEEEcCCccEEEEEEEEEEEe
Q psy2166 767 CRATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 767 C~a~N~~G~~~~~~~l~V~~~ 787 (805)
|.|.|.+|.....+.+.+...
T Consensus 274 Cs~rcg~g~~~rdv~c~s~~g 294 (560)
T KOG4597|consen 274 CSARCGAGFLRRDVPCSSVKG 294 (560)
T ss_pred eccccccceeeccceeeeecc
Confidence 999999999999999888654
No 380
>KOG1480|consensus
Probab=96.84 E-value=0.00098 Score=71.95 Aligned_cols=190 Identities=21% Similarity=0.284 Sum_probs=107.9
Q ss_pred hcCccccCCCCCCCCcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecC------
Q psy2166 48 LAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF------ 121 (805)
Q Consensus 48 d~g~y~c~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~------ 121 (805)
|.|.|--........ ..|.|+..+. .--+..|.++.|.|.+. |.+++...-+++-+....+..+...+
T Consensus 8 ~~~~~~~~~~~~a~g-~l~~~~~~p~-~~yii~~~p~~l~c~a~----~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~ 81 (909)
T KOG1480|consen 8 DNGEALPESIPSAPG-DLPHFTTEPK-SAYIIKNKPLRLQCKAN----PATQIRFKCNSEWVHQSRHEKLEGTDETSGLG 81 (909)
T ss_pred CchhhccccCCCCCC-CcceeeecCC-ccceecCCCccceecCC----cccccccccChhhhcCccceeeeccCccccee
Confidence 344443333333333 6688887776 45678999999999975 55555544455555444332222111
Q ss_pred -cEEEEEEcccccCCCe---EEEEE--EEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCC
Q psy2166 122 -GFVTLDLTEVYDRDQG---IYTCR--AWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVP 195 (805)
Q Consensus 122 -~~~~L~I~~~~~~D~G---~Y~C~--a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 195 (805)
......|..-+.++.| .|.|+ |....|...+. . ...++..+....
T Consensus 82 ~~~~si~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~------~---------------a~vr~ay~rk~f-------- 132 (909)
T KOG1480|consen 82 VREVSIDISRQQVETSGGPEDYWCQCVAWSDDGTVKSR------K---------------ATVRIAYLRKHF-------- 132 (909)
T ss_pred EEeeeeeeehhhhhcccCccceeeeeeeecCCCcchhh------h---------------HHHHHHHHHHhh--------
Confidence 1223444444444433 46554 44444421111 0 011111111111
Q ss_pred CCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEE
Q psy2166 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGV 275 (805)
Q Consensus 196 ~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 275 (805)
...+.. ..|..+....+.|.. +.+.|...+.|+|++..+....+...... ..|++..+...|.|.
T Consensus 133 ----------~~~p~~-q~V~~~s~~~l~cr~-pe~~paae~~w~k~e~~~~pd~n~~~~~d---~~li~~~arlsd~~n 197 (909)
T KOG1480|consen 133 ----------EQSPVG-QEVQEETTLQLPCRP-PEGDPKAEVEWLKNEVVIDPDANVIRASD---HNLIISQARLSDSGN 197 (909)
T ss_pred ----------ccChhh-heecccccccccccC-cccchhhhhhccccCCCCCccccchhhhc---CCccccchhhhhccc
Confidence 111111 136778888899976 36888899999999998877444332222 358999999999999
Q ss_pred EEEEEEcCCeeE
Q psy2166 276 YTCRATNKWGQA 287 (805)
Q Consensus 276 Y~C~~~n~~g~~ 287 (805)
|+|+|.|..+..
T Consensus 198 ytc~a~ni~~~r 209 (909)
T KOG1480|consen 198 YTCEATNIVAKR 209 (909)
T ss_pred ceeeeehhhccc
Confidence 999999876543
No 381
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.73 E-value=0.0035 Score=45.98 Aligned_cols=61 Identities=15% Similarity=0.293 Sum_probs=41.2
Q ss_pred CCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 510 ~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
..+.|.|+|.+. -.|+|++ |..+.... ..+|.+-+...+-.|.|.|.+++ ......|.|.
T Consensus 5 ~~~~V~L~C~~~------tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy 64 (69)
T cd07691 5 SEGKVFLKCNGA------TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY 64 (69)
T ss_pred cCceEEEEecCC------CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence 456799999652 2599999 65553221 22588888778889999999877 2344455554
Q ss_pred e
Q psy2166 590 S 590 (805)
Q Consensus 590 ~ 590 (805)
.
T Consensus 65 Y 65 (69)
T cd07691 65 Y 65 (69)
T ss_pred E
Confidence 3
No 382
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.71 E-value=0.008 Score=48.28 Aligned_cols=67 Identities=25% Similarity=0.321 Sum_probs=42.8
Q ss_pred eecCCCcEEEEEEEecCCCCC--ceEEEEECCEecCCCCceEE-----EecCcEEEEEEcccccCCCe-EEEEEEEeC
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPN--LKIEWIFNGKPLELGSRFKT-----TADFGFVTLDLTEVYDRDQG-IYTCRAWNL 146 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~--~~v~W~k~g~~i~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G-~Y~C~a~n~ 146 (805)
.+.+|..++|.|.+.+ +.|. ..|.|+|....+.... +.- ........++|... ++|.| .|.|+|...
T Consensus 11 ~l~~G~~vtv~C~v~~-v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 11 PLEEGKPVTVKCEVPD-VYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred cccCCceEEEEEEecC-cccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 4589999999999985 3444 7799998766655332 111 11112234555554 56665 999999654
No 383
>PHA02633 hypothetical protein; Provisional
Probab=96.69 E-value=0.0054 Score=43.75 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=32.3
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEeC
Q psy2166 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 751 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 788 (805)
.|-|-++..+|+|.|.|+.+|.-=....++.|+|....
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 68899999999999999999977777888888886543
No 384
>PHA02633 hypothetical protein; Provisional
Probab=96.69 E-value=0.0049 Score=43.94 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=33.8
Q ss_pred EEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccc
Q psy2166 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKE 162 (805)
Q Consensus 125 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 162 (805)
.|.|.++..+|+|.|.|..+|..-..+.+..|+|..+.
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 69999999999999999999988888888899887653
No 385
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.16 E-value=0.011 Score=50.30 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=47.8
Q ss_pred CCCcEEEEEEEecC---CCCCceEEEEECCEecCC--CC----------ceEE-EecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 80 EAQPLHLEAQVEPK---NDPNLKIEWIFNGKPLEL--GS----------RFKT-TADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 80 ~G~~v~L~C~~~~~---~~p~~~v~W~k~g~~i~~--~~----------~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
=+++|.|+|.+... ..+...|.|.++|..+-. +. +..+ ....|..+|.+...+.- .|.|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 47899999999731 124567999999877631 11 1111 11135567888886655 89999999
Q ss_pred EeCCeeEEEEEEEEE
Q psy2166 144 WNLAGETFTSTTIYC 158 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V 158 (805)
.....+.+....|..
T Consensus 105 t~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 105 TELSREGETTIELKY 119 (130)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred EecCCCceEEEEEEE
Confidence 988777777776665
No 386
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.12 E-value=0.0038 Score=53.11 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=48.3
Q ss_pred ccCCCCeEEEEEEEeecC-----CCCeEEEEEECCEEccCC---CCeE---------E-EeeCcEEEEEEcCCCCCCCEE
Q psy2166 703 NLSEGEIAHFEASLIPVG-----DQTMTVEFLYNGKPIEAS---HRIR---------T-VHAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g-----~p~~~v~W~~~g~~l~~~---~~~~---------~-~~~~~~~~L~i~~v~~~d~G~ 764 (805)
...-++++.|.|.+. . -+...|+|.++|+.+-.- .... + .--.|.+.|.+...+.- .|.
T Consensus 23 ~t~CN~tV~IPC~v~--n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~Gn 99 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVN--NLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGN 99 (130)
T ss_dssp E-TT-SEEEE--BBS--S---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EE
T ss_pred EEecCCCEEEEeEec--cccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccc
Confidence 456789999999996 3 144679999998754311 1100 0 00123345777664433 899
Q ss_pred EEEEEEcCCccEEEEEEEEEE
Q psy2166 765 YTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 765 Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
|+|.|.+...+....++|.+.
T Consensus 100 YTCeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 100 YTCEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEEEETTEEEEEEEEEEE-
T ss_pred eEEEEEecCCCceEEEEEEEE
Confidence 999999999888888888773
No 387
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=95.56 E-value=0.52 Score=47.58 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=99.8
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCC-CceEEEEECCEecC-----------------CCCceEEEec------CcEEEE
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDP-NLKIEWIFNGKPLE-----------------LGSRFKTTAD------FGFVTL 126 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~k~g~~i~-----------------~~~~~~~~~~------~~~~~L 126 (805)
.+-..+.+..|..|.|.|..+.-|+. .....|+--|-++. .+..|.+..- -..++|
T Consensus 269 k~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STL 348 (500)
T PHA02914 269 KKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTL 348 (500)
T ss_pred cccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceE
Confidence 34446677789999999999854554 34688987664443 2234555432 246799
Q ss_pred EEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCcee
Q psy2166 127 DLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFT 206 (805)
Q Consensus 127 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 206 (805)
+|.++..+.+|.|.|+|....-..++..-+.|.... +.
T Consensus 349 TIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V------------------------------------------~f 386 (500)
T PHA02914 349 TIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHV------------------------------------------FF 386 (500)
T ss_pred EeeeEEEEcCCceEEEEecCcchhhhhhheEeccEE------------------------------------------EE
Confidence 999999999999999998765455555556554321 11
Q ss_pred cccccccccCCCce-EEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-------EEEEEcCeEEEEEcCCCCcc-cEEEE
Q psy2166 207 SEFQHLSNLSEGEI-AHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-------RTVHAFGMVVLEILGTKIED-TGVYT 277 (805)
Q Consensus 207 ~~~~~~~~v~~g~~-~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~-------~~~~~~~~~~L~i~~~~~~d-~G~Y~ 277 (805)
.+ ..+|+. -...|-+......++.+.|.-+|........- .....-....+.|.+-...| --.-.
T Consensus 387 ~W------~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~ 460 (500)
T PHA02914 387 KW------NTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLS 460 (500)
T ss_pred EE------EeccCceEEEEEEEEecccCCceeEEEEccEEecCeecCcccccccccccccceEEEEEecccCccccccce
Confidence 11 224333 34578764333456789999888655432111 11111124566666655555 33556
Q ss_pred EEEEcCCe
Q psy2166 278 CRATNKWG 285 (805)
Q Consensus 278 C~~~n~~g 285 (805)
|......+
T Consensus 461 Cr~~tg~~ 468 (500)
T PHA02914 461 CINITGQG 468 (500)
T ss_pred EEEecCCC
Confidence 77665444
No 388
>PHA02982 hypothetical protein; Provisional
Probab=95.49 E-value=0.042 Score=49.90 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=58.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCE-Ecc----------C--------CCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGK-PIE----------A--------SHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~-~l~----------~--------~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
....|++|.|.|... .+.-.....|+++.. -|. . .+.++++-++..++|+|.+++.+..|
T Consensus 35 ~a~vd~~V~L~C~~~-~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 35 NATVDQEVKLQCLFK-DADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hccCCCcEEEEecCC-CcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 678899999999953 455556889998532 221 1 13345566677889999999999999
Q ss_pred EEEEEEEcCCccEEE-EEEEEE
Q psy2166 764 VYTCRATNKWGQAEI-SVNLEC 784 (805)
Q Consensus 764 ~Y~C~a~N~~G~~~~-~~~l~V 784 (805)
=|+|.|....|..+. ..-|.|
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred ceEEEEecCCCchheeheeeeE
Confidence 999999987764333 444444
No 389
>KOG4597|consensus
Probab=94.76 E-value=0.061 Score=55.23 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=61.8
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE---CCEec--CCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF---NGKPL--ELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k---~g~~i--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 147 (805)
+....|..|++..++|-+. |.+.+.|+|.+ |++.+ .....+.--.-.....|.|-+....|+|.|+|.+++..
T Consensus 203 pa~w~vg~wetcS~tCg~~--G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~ 280 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQ--GRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGA 280 (560)
T ss_pred cchhhcccchhhccccccc--CCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccc
Confidence 3456788999999999998 78999999986 33322 21111100001134479999999999999999999999
Q ss_pred eeEEEEEEEEEe
Q psy2166 148 GETFTSTTIYCS 159 (805)
Q Consensus 148 g~~~~~~~l~V~ 159 (805)
|.......+.+.
T Consensus 281 g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 281 GFLRRDVPCSSV 292 (560)
T ss_pred ceeeccceeeee
Confidence 988887777654
No 390
>PHA03042 CD47-like protein; Provisional
Probab=94.61 E-value=0.18 Score=48.27 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=50.5
Q ss_pred CCCCeEEEEEEEeecCCC------CeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEE
Q psy2166 705 SEGEIAHFEASLIPVGDQ------TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~p------~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 778 (805)
.-++++.+.|.+. ++ .-.++|.++|+.+-..+.. ..++|.+.. ..+=.|.|+|.|.+...+...
T Consensus 29 ~CN~TV~IpC~v~---n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~ 98 (286)
T PHA03042 29 TCNKTIVIVCNLN---LLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNF-SKNLSGNYTCEAINKFNKIKN 98 (286)
T ss_pred ecCceEEEEeecC---ChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEec-cccCCCceeEEEeecccCccE
Confidence 4588999999995 44 4579999999876544332 123566643 334489999999998777777
Q ss_pred EEEEEEEE
Q psy2166 779 SVNLECVV 786 (805)
Q Consensus 779 ~~~l~V~~ 786 (805)
.++|.-.+
T Consensus 99 ~IeLk~~~ 106 (286)
T PHA03042 99 TIELQYVI 106 (286)
T ss_pred EEEEEEEE
Confidence 77766543
No 391
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.43 E-value=0.057 Score=51.43 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=40.6
Q ss_pred CCCceEEEEEC-CEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeC
Q psy2166 95 DPNLKIEWIFN-GKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 95 ~p~~~v~W~k~-g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 146 (805)
-.+|.+.|..+ |..+...+++.++..| .|.+.+.+.+++|.|+|..+..
T Consensus 10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred cCCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence 45679999985 5666666688888777 7999999999999999998764
No 392
>PHA03283 envelope glycoprotein E; Provisional
Probab=94.35 E-value=1.2 Score=47.05 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=57.0
Q ss_pred EEEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy2166 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP 203 (805)
Q Consensus 124 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (805)
..|.|.+++.+++|.|+-..++..+.......|+|..++..... .|. ............
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~--~Pp-------------------~~~pv~P~~h~a 192 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQT--PPA-------------------PLVPQVPARHHT 192 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCC--CCC-------------------CccccCCccCCc
Confidence 37999999999999999999987764444555565543221111 110 000111111234
Q ss_pred ceecccccccccCCCceEEEEEEEeeCC-CC--CeEEEEEEC
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPVG-DQ--TMTVEFLYN 242 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~~-~p--~~~i~W~k~ 242 (805)
.|....-.......|+++.+.......- .+ ...|.||.-
T Consensus 193 ~f~v~nYhS~vf~~GDtf~lsi~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 193 DFHVRGYHSRVYSPGDSFDLSVHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred eEEEecceeEEecCCCceeEeEEEeeccCCCCceEEEEEEEe
Confidence 4554443344577999998877664332 22 368999863
No 393
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.11 E-value=0.091 Score=50.12 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=39.9
Q ss_pred CCeEEEEEE-CCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 722 QTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 722 p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
..|.+.|.. +|+.+....++.++..| .|.+.+....++|.|+|..+-..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 467999997 57778777777766655 49999999999999999987554
No 394
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=93.77 E-value=9 Score=39.15 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=48.8
Q ss_pred CcccccCCCeEEEEEEEeecCCC-CcEEEEEECCEEccC-----------------CCceEEEE------eCcEEEEEEc
Q psy2166 312 SLEGLKDGDSAHFECTLTPVNDP-ELKVEWFHNGKPIFH-----------------KNRVKMVS------DFGFVVMDIA 367 (805)
Q Consensus 312 ~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~g~~l~~-----------------~~~~~~~~------~~~~~~l~i~ 367 (805)
+..++..|..+.|.|..+--|+. .....|+--|-++.+ ...+.+.. +-.+++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 34446679999999998632333 356899875544421 11222221 1234579999
Q ss_pred ccCcCCceEEEEEEEeCc
Q psy2166 368 YVQSHDSGEYVCRAWNKY 385 (805)
Q Consensus 368 ~v~~~d~G~Y~C~a~n~~ 385 (805)
++..+..|-|.|+|....
T Consensus 352 ka~I~N~GCY~~~a~~g~ 369 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGK 369 (500)
T ss_pred eEEEEcCCceEEEEecCc
Confidence 999999999999997543
No 395
>PHA03283 envelope glycoprotein E; Provisional
Probab=93.32 E-value=2.6 Score=44.69 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=62.5
Q ss_pred EEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCC
Q psy2166 627 VILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 706 (805)
Q Consensus 627 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 706 (805)
..|+|.+++.+++|.|+-...|..+.....+-|.|..++...- +.+....+..+......|....-......+
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~-------~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~ 206 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQ-------TPPAPLVPQVPARHHTDFHVRGYHSRVYSP 206 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCC-------CCCCCccccCCccCCceEEEecceeEEecC
Confidence 4599999999999999999999887556666777765332110 011112333334455666665433327799
Q ss_pred CCeEEEEEEEeecC-CC--CeEEEEEE
Q psy2166 707 GEIAHFEASLIPVG-DQ--TMTVEFLY 730 (805)
Q Consensus 707 G~~~~l~C~~~~~g-~p--~~~v~W~~ 730 (805)
|+++.++-.....- .+ ...|.|++
T Consensus 207 GDtf~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 207 GDSFDLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred CCceeEeEEEeeccCCCCceEEEEEEE
Confidence 99999988876111 12 25799987
No 396
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=93.00 E-value=0.58 Score=38.04 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=29.8
Q ss_pred CceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEE
Q psy2166 113 SRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152 (805)
Q Consensus 113 ~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 152 (805)
.|+....++. +|.|+.++..|+|.|...+++..|....
T Consensus 62 ~r~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V~~ 99 (108)
T PF11465_consen 62 NRFNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKVCT 99 (108)
T ss_dssp HHEEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred ceEeeeccCc--eEEEeecCcccCceEEEEEEcCCCcEEE
Confidence 3666666655 8999999999999999999999888743
No 397
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.89 E-value=0.32 Score=39.48 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=39.9
Q ss_pred CCCCeE--EEEEECCEEccC---CCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 720 GDQTMT--VEFLYNGKPIEA---SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 720 g~p~~~--v~W~~~g~~l~~---~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
..+... ++|..+...... ++++.+...+. .|.|..++..|+|.|.-+++|..|.. .+....|
T Consensus 38 s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqV 104 (108)
T PF11465_consen 38 SQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQV 104 (108)
T ss_dssp SSSEEE-EEEEETTEEEESSTTHHHHEEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEE
T ss_pred cCCceEEEEEEcCCCcccccccccceEeeeccCc--eEEEeecCcccCceEEEEEEcCCCcE-EEEEEEE
Confidence 555554 455544443322 24555555444 89999999999999999999999976 4444444
No 398
>PHA03042 CD47-like protein; Provisional
Probab=92.28 E-value=0.55 Score=45.11 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=47.5
Q ss_pred cCCCeEEEEEEEeeC---CCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 509 KEGQSAHFEARLTPV---TDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 509 ~~G~~v~L~C~v~~~---g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
.-.+++.+.|.+... ..-...+.|..||+.+-..... ..+.|.+.. ...=.|+|+|+|.+...+......
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~Ie 101 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIE 101 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEec-cccCCCceeEEEeecccCccEEEE
Confidence 457899999999721 1135679999999887432211 123466653 334489999999976665555555
Q ss_pred EEE
Q psy2166 586 LKC 588 (805)
Q Consensus 586 l~V 588 (805)
|.-
T Consensus 102 Lk~ 104 (286)
T PHA03042 102 LQY 104 (286)
T ss_pred EEE
Confidence 543
No 399
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=91.69 E-value=0.66 Score=46.84 Aligned_cols=37 Identities=5% Similarity=0.028 Sum_probs=25.1
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 731 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~ 731 (805)
.||.....-... .+ .++|.|.|.++-.+...+.|.||
T Consensus 202 vpP~V~Vt~k~~----~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 202 VTPTVKVTGEEL----GD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCceEEecccC----CC-CceEEEEEEeEeCCccEEEEEec
Confidence 566655532211 12 58999999965556678999999
No 400
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=91.60 E-value=0.78 Score=46.32 Aligned_cols=39 Identities=8% Similarity=0.215 Sum_probs=28.9
Q ss_pred CCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEEC
Q psy2166 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN 535 (805)
Q Consensus 492 ~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~ 535 (805)
...+|.+.+.-.. . .+ .++|+|.|.++-+..+.++|.||
T Consensus 200 R~vpP~V~Vt~k~---~-~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 200 KPVTPTVKVTGEE---L-GD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCCCceEEeccc---C-CC-CceEEEEEEeEeCCccEEEEEec
Confidence 3567777664331 1 22 68999999988788899999999
No 401
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=91.56 E-value=0.99 Score=36.15 Aligned_cols=68 Identities=13% Similarity=0.320 Sum_probs=46.6
Q ss_pred CceecCCCcEEEEEEEecC---CCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPK---NDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~---~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
...|..|.+++..|.+... ......|.|..|+..++ +++|....+. .++++|.+.....+-.|-|...
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP-~~qy~~in~~-~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP-GSQYRVINDT-VSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST-CGCEEEESTT-EEEEEESS--SSEEEEEEEEEC
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC-hhHcceeCCe-EEEEEEccCCCCCceEEEEEEc
Confidence 4478999999999999843 13667899999999554 5567666554 4688888877766667777643
No 402
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=91.25 E-value=1.8 Score=33.88 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=34.7
Q ss_pred CceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEE-EeCCeeEEEEEEEEE
Q psy2166 97 NLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA-WNLAGETFTSTTIYC 158 (805)
Q Consensus 97 ~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~n~~g~~~~~~~l~V 158 (805)
.+.+.|+-.+..+....+ .+.......+|+|.+.|.| .+..........|.|
T Consensus 26 ~~~~~l~~~~~k~~~~~~----------~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETKK----------LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEEEESS----------EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCccccccce----------EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 567777766654432222 4556677889999999999 666656666666655
No 403
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=91.10 E-value=0.81 Score=36.65 Aligned_cols=64 Identities=17% Similarity=0.353 Sum_probs=44.5
Q ss_pred ccCCCeEEEEEEEeeCC---CCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEE
Q psy2166 508 LKEGQSAHFEARLTPVT---DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRA 573 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g---~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 573 (805)
+..|.+++..|.+...- .....+.|..|+..++.+ ++....+ +.+.+++.+.....+-.|-|..
T Consensus 15 v~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~~in~-~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 15 VSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYRVIND-TVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp EETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEEEEST-TEEEEEESS--SSEEEEEEEEE
T ss_pred EeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-HcceeCC-eEEEEEEccCCCCCceEEEEEE
Confidence 78999999999998432 256789999999966554 5654444 4478999887777777888874
No 404
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=90.43 E-value=16 Score=34.46 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=39.8
Q ss_pred CCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEee--CCEEEEEEccCCC--CCC
Q psy2166 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD--FGIVILDILYCYE--ENS 566 (805)
Q Consensus 491 ~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~--~~~~~L~i~~v~~--~d~ 566 (805)
.+..+|.+.+.+. .| ...|.+.-.+.....+.|.-++.............. +.-....|.+... +..
T Consensus 78 ~Vy~~P~vsv~F~------~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~ 148 (211)
T PF02124_consen 78 SVYPKPRVSVRFE------DG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDED 148 (211)
T ss_pred ceecCCEEEEEec------CC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccC
Confidence 3456777776532 33 345888755555579999988876532222221110 1111233333322 234
Q ss_pred E--EEEEEEE
Q psy2166 567 G--VYECRAT 574 (805)
Q Consensus 567 G--~Y~C~a~ 574 (805)
| .|+|.+.
T Consensus 149 ~~~~YtC~l~ 158 (211)
T PF02124_consen 149 GPVEYTCRLI 158 (211)
T ss_pred CceeEEEEEe
Confidence 5 9999985
No 405
>PHA03282 envelope glycoprotein E; Provisional
Probab=90.32 E-value=13 Score=38.98 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcccEEEEEEEEc
Q psy2166 260 MVVLEILGTKIEDTGVYTCRATN 282 (805)
Q Consensus 260 ~~~L~i~~~~~~d~G~Y~C~~~n 282 (805)
...|.|.++..+++|.|.|++.-
T Consensus 332 ~VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 332 TVNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred ccceEecCCCcccCceEEEEEEE
Confidence 35899999999999999999873
No 406
>PHA03286 envelope glycoprotein E; Provisional
Probab=90.30 E-value=11 Score=39.37 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=55.4
Q ss_pred EEEEeccCCCCCcEEEEEEEEeCCcceEE-EEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeec-CCccccc
Q psy2166 627 VILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE-FQHLSNL 704 (805)
Q Consensus 627 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~-~~~~~~v 704 (805)
..|+|.+++.+++|.|+-...|..|.... .+-|.|.++-.- ..|.. ..+..+......|... ..+. ..
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~----r~p~~-----~~pv~p~~~~~~f~l~ny~S~-lF 196 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRA----RDPTM-----NIPITPPSTRVDLSLKNFKAF-LY 196 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCC----CCCCc-----ccCCCCcccceEEEEecccce-Ee
Confidence 34999999999999999999988776554 445566432100 00000 0000111122345543 3444 78
Q ss_pred CCCCeEEEEEEEeecCC---CCeEEEEEE
Q psy2166 705 SEGEIAHFEASLIPVGD---QTMTVEFLY 730 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~---p~~~v~W~~ 730 (805)
.+|+++.++-.....-. =...|.|++
T Consensus 197 ~~GDTF~vSv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 197 NVGDTVDASVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred cCCCeEEEEEEEeecccCCCceEEEEEEE
Confidence 99999988877652111 225899987
No 407
>PHA03286 envelope glycoprotein E; Provisional
Probab=90.21 E-value=17 Score=37.93 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=28.6
Q ss_pred EEEEEcccccCCCeEEEEEEEeCCeeEEE-EEEEEEec
Q psy2166 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFT-STTIYCST 160 (805)
Q Consensus 124 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~ 160 (805)
..|.|.+++.+++|.|+-..+|+.|.... ..-|+|..
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~ 164 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSG 164 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEec
Confidence 37999999999999999999987665444 34456643
No 408
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=88.96 E-value=6.2 Score=31.69 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=46.2
Q ss_pred CCCeeeecCCccc-ccCCC--CeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 690 RPPQFTSEFQHLS-NLSEG--EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 690 ~~P~~~~~~~~~~-~v~~G--~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+|+|..+....+ .+..+ +...|.+.+. +. ...+.|+-||+.+...... . .+.+. ....|.|+
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~--~~-~~~~~W~vdg~~~g~~~~~------~--~~~~~---~~~~G~h~ 74 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAA--GG-RGPVYWFVDGEPLGTTQPG------H--QLFWQ---PDRPGEHT 74 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEe--CC-CCcEEEEECCEEcccCCCC------C--eEEeC---CCCCeeEE
Confidence 5667776655541 22222 2555566665 44 4499999999999433221 1 23332 25789999
Q ss_pred EEEEcCCccEEE
Q psy2166 767 CRATNKWGQAEI 778 (805)
Q Consensus 767 C~a~N~~G~~~~ 778 (805)
..+....|....
T Consensus 75 l~vvD~~G~~~~ 86 (89)
T PF06832_consen 75 LTVVDAQGRSAS 86 (89)
T ss_pred EEEEcCCCCEEE
Confidence 999999997665
No 409
>PHA03282 envelope glycoprotein E; Provisional
Probab=88.76 E-value=11 Score=39.58 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCCCEEEEEEEE
Q psy2166 749 MVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 749 ~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
...|++.|+..+++|.|-|++.
T Consensus 332 ~VdL~F~nAp~saSGLYVfVl~ 353 (540)
T PHA03282 332 TVNLQLRDASEASGGLYVCVVY 353 (540)
T ss_pred ccceEecCCCcccCceEEEEEE
Confidence 3479999999999999999985
No 410
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=88.61 E-value=22 Score=33.55 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=31.8
Q ss_pred CceEEEEECCEecCCCC---ceEEEecC---cEEEEEE-cccccCCCeEEEEEEEeCC
Q psy2166 97 NLKIEWIFNGKPLELGS---RFKTTADF---GFVTLDL-TEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 97 ~~~v~W~k~g~~i~~~~---~~~~~~~~---~~~~L~I-~~~~~~D~G~Y~C~a~n~~ 147 (805)
...+.|+.||..+.... +.....+| ..++|.+ .+...+-.-..+|.+.-..
T Consensus 6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r 63 (211)
T PF02124_consen 6 SVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYR 63 (211)
T ss_pred cEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEcc
Confidence 45789999999887542 23344444 2446666 3334444568999986543
No 411
>PHA03052 Hypothetical protein; Provisional
Probab=88.44 E-value=1.8 Score=31.72 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=29.8
Q ss_pred CCceecCCCcEEEEEEEe-cCCCCCceEEEEECCEecC
Q psy2166 74 PEFKLGEAQPLHLEAQVE-PKNDPNLKIEWIFNGKPLE 110 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~-~~~~p~~~v~W~k~g~~i~ 110 (805)
..+.+..|.+++|.|.+. +.+...+.|.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 356788999999999998 2245577899999998883
No 412
>PHA03281 envelope glycoprotein E; Provisional
Probab=88.26 E-value=13 Score=39.71 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=57.4
Q ss_pred EEEeccCCCCCcEEEEEEEEeCCcceEE-EEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCC
Q psy2166 628 ILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 706 (805)
Q Consensus 628 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 706 (805)
.|+|.+++..++|.|+--.....|.... .+-|.|..++... +|. +. ..++....+|....-......+
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~r----ip~-----p~--Vtpk~hga~F~vknYhShVF~p 367 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENH----IDL-----PA--VTPKPKGAEFHMWHYHSHVFSV 367 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccC----CCC-----CC--ccccccCceEEEeccceeEecC
Confidence 4999999999999999888866665444 5556665433111 111 11 1223344556664433326799
Q ss_pred CCeEEEEEEEeecCCC---CeEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQ---TMTVEFLY 730 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p---~~~v~W~~ 730 (805)
|+++.+.......... ...|.|++
T Consensus 368 GDTFsl~v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 368 GDTFSLAMHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred CCeeEEEEEEeeeccCCCceeEEEEEE
Confidence 9999999988622112 25799987
No 413
>PHA03052 Hypothetical protein; Provisional
Probab=87.71 E-value=2.2 Score=31.27 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=29.7
Q ss_pred CcccccCCCeEEEEEEEe-eCCCCCcEEEEEECCEEcc
Q psy2166 504 DVTQLKEGQSAHFEARLT-PVTDPDLVVEWFYNGKKLP 540 (805)
Q Consensus 504 ~~~~v~~G~~v~L~C~v~-~~g~p~~~v~W~~~g~~l~ 540 (805)
....+..|..++|.|.|. +.|...+.+.|.-|++.+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 444578899999999997 3345578999999999883
No 414
>PHA03281 envelope glycoprotein E; Provisional
Probab=86.99 E-value=15 Score=39.36 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=53.5
Q ss_pred EEEEcccccCCCeEEEEEEEeCCeeEEE-EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy2166 125 TLDLTEVYDRDQGIYTCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP 203 (805)
Q Consensus 125 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (805)
.|.|.+++..++|.|+-..+...|.... ..-|+|..++. .+...|. ........
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~--~rip~p~-----------------------Vtpk~hga 353 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEE--NHIDLPA-----------------------VTPKPKGA 353 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcc--cCCCCCC-----------------------ccccccCc
Confidence 6899999999999999988866564433 34455543221 1111110 00111223
Q ss_pred ceecccccccccCCCceEEEEEEEeeC---CCCCeEEEEEE
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPV---GDQTMTVEFLY 241 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~---~~p~~~i~W~k 241 (805)
.|....-.......|+++.+....... +.=...|.||.
T Consensus 354 ~F~vknYhShVF~pGDTFsl~v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 354 EFHMWHYHSHVFSVGDTFSLAMHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred eEEEeccceeEecCCCeeEEEEEEeeeccCCCceeEEEEEE
Confidence 455444333347799999888877533 11236899986
No 415
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=86.96 E-value=0.59 Score=50.03 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=17.8
Q ss_pred EEEEcccccCCCeEEEEEEEeCCeeEEE-EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy2166 125 TLDLTEVYDRDQGIYTCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP 203 (805)
Q Consensus 125 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (805)
.|.|.+++.+|+|.|+-..++..+.... ...|.|..+.... ....|. .+........
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~-~~p~p~---------------------~p~~p~~~~~ 147 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDP-RTPPPH---------------------HPIVPHRHGA 147 (439)
T ss_dssp ------------------------------------------------------------------------------SE
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCC-CCCCCC---------------------CCCCCccccc
Confidence 6999999999999999999876554432 3444444332110 000110 0000011223
Q ss_pred ceecccccccccCCCceEEEEEEEeeCCCC----CeEEEEEE
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQ----TMTVEFLY 241 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p----~~~i~W~k 241 (805)
.|............|+++.+...+...... ...|.||.
T Consensus 148 ~~~~~~~~s~vf~~Gdtf~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 148 TFHLKNYHSHVFSPGDTFHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp EEEEE--SEEE--TT--EE---EEEEEESSS--EEEEEEEEE
T ss_pred EEEEeccceEEecCCCcEEEeEEEEeccCCCCCeeEEEEEEE
Confidence 344444444457899999888776533222 26899987
No 416
>PHA03189 UL14 tegument protein; Provisional
Probab=86.38 E-value=6.2 Score=38.67 Aligned_cols=86 Identities=14% Similarity=0.126 Sum_probs=48.6
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEE-----EE----------ECCEecCCCC-------ceEEEecC--cEEEEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIE-----WI----------FNGKPLELGS-------RFKTTADF--GFVTLDL 128 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~-----W~----------k~g~~i~~~~-------~~~~~~~~--~~~~L~I 128 (805)
+..+-+..|+.+++.|.+....=|..+|. |- .+|+.+..+. ++++..-+ ...+|++
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 33456789999999999985433333332 21 1234443332 23332222 3446665
Q ss_pred cccccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 129 TEVYDRDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
++..+-+|.|.|+..|..-......++.|.
T Consensus 139 -~v~t~taG~Y~CvLrN~tHglv~~rf~ivt 168 (348)
T PHA03189 139 -RVSTSTAGMYECVLRNETHGLVLQRFVIVT 168 (348)
T ss_pred -EEEecccceEEEEeccccceeeeEEeeeee
Confidence 455677999999999975444444444443
No 417
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=85.79 E-value=7.2 Score=30.51 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=31.9
Q ss_pred eEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE-EcCCccEEEEEEEEE
Q psy2166 724 MTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA-TNKWGQAEISVNLEC 784 (805)
Q Consensus 724 ~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~N~~G~~~~~~~l~V 784 (805)
+.+.|+-.+..+... .. .+.....+.+|+|...|.| .|..-.-.....|.|
T Consensus 27 ~~~~l~~~~~k~~~~--------~~--~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 27 PSLFLENPGKKSLET--------KK--LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEEECSSCEEEEE--------SS--EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred hhheeeccCcccccc--------ce--EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 567777655433222 12 3555677889999999999 665545555555544
No 418
>PHA03189 UL14 tegument protein; Provisional
Probab=84.37 E-value=7.4 Score=38.17 Aligned_cols=78 Identities=13% Similarity=0.219 Sum_probs=46.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE---------------CCEEccCCCCeEE------EeeCc---EEEEEEcCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY---------------NGKPIEASHRIRT------VHAFG---MVVLEILGTK 758 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~---------------~g~~l~~~~~~~~------~~~~~---~~~L~i~~v~ 758 (805)
-+..|+.+++.|.+-.-..|...|+=.+ +|..+.+....++ ..+.+ .++|++ ++.
T Consensus 63 l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF-~v~ 141 (348)
T PHA03189 63 LVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF-RVS 141 (348)
T ss_pred ccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE-EEE
Confidence 6789999999999974345776654322 2333333222111 11222 244555 467
Q ss_pred CCCCEEEEEEEEcCC-ccEEEEEE
Q psy2166 759 IEDTGVYTCRATNKW-GQAEISVN 781 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~~-G~~~~~~~ 781 (805)
.+-+|.|.|+..|.. |-...++.
T Consensus 142 t~taG~Y~CvLrN~tHglv~~rf~ 165 (348)
T PHA03189 142 TSTAGMYECVLRNETHGLVLQRFV 165 (348)
T ss_pred ecccceEEEEeccccceeeeEEee
Confidence 788999999999974 44444433
No 419
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=83.88 E-value=1.8 Score=46.36 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=19.0
Q ss_pred EEEeccCCCCCcEEEEEEEEeCCcceEEE-EEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeec-CCcccccC
Q psy2166 628 ILDILYCYEENSGVYECRATNKYGSDVTK-ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE-FQHLSNLS 705 (805)
Q Consensus 628 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~-~~~~~~v~ 705 (805)
.|.|.+++.+|+|.|+-...+..|..... +.|.|..+... +....+..+..+......|... +... ...
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~--------~~~p~p~~p~~p~~~~~~~~~~~~~s~-vf~ 160 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPD--------PRTPPPHHPIVPHRHGATFHLKNYHSH-VFS 160 (439)
T ss_dssp ----------------------------------------------------------------SEEEEEE--SEE-E--
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcC--------CCCCCCCCCCCCcccccEEEEeccceE-Eec
Confidence 39999999999999999998776655543 44555442211 0011111122222334455543 3444 789
Q ss_pred CCCeEEEEEEEeecCCC-C---eEEEEEE
Q psy2166 706 EGEIAHFEASLIPVGDQ-T---MTVEFLY 730 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p-~---~~v~W~~ 730 (805)
+|+++.+.-.+...... . ..|.|++
T Consensus 161 ~Gdtf~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 161 PGDTFHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp TT--EE---EEEEEESSS--EEEEEEEEE
T ss_pred CCCcEEEeEEEEeccCCCCCeeEEEEEEE
Confidence 99999999888633333 1 4799987
No 420
>KOG1026|consensus
Probab=82.46 E-value=1.4 Score=49.78 Aligned_cols=147 Identities=16% Similarity=0.092 Sum_probs=93.9
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
.+..|..+++.|.+. +.|.|...|+.++............-. .. ...+.+ +.|.+.|..|.....+.+
T Consensus 203 ~v~~~~~~~~~c~~~--~~~vp~~~~~~~~~~~~~~~~~~~~c~-~~-~~~~~~--------~~c~~E~~~~~~~~~v~~ 270 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQA--GIPVPCHYWFPNCLASSNTNQTSSLCR-SE-CEVLEN--------DLCIAENAVARSNPSILL 270 (774)
T ss_pred hhcccchheeeeecc--cCCCcceeeecccccccCCCccccccc-cc-ceeeec--------hhhHHHHhhhhcCceeee
Confidence 378899999999999 789999999987765544221111000 10 112221 899999999998877777
Q ss_pred EEeeeeee-----------------eecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeC
Q psy2166 587 KCVSKTNL-----------------ILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649 (805)
Q Consensus 587 ~V~~~~~~-----------------~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 649 (805)
.+..+... +...+.|...|..+|..+...+.......+...-+......-.+.|.|+|.+.|.
T Consensus 271 ~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~~e~~ 350 (774)
T KOG1026|consen 271 VVDLPKAEVLLCSPLSDHHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLFPELP 350 (774)
T ss_pred EEecccccccCCCCccccCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcceeeeccc
Confidence 66554221 1224567889999887654322221111110012334444677889999999999
Q ss_pred CcceEEEEEEEEeecc
Q psy2166 650 YGSDVTKASLKCVSKT 665 (805)
Q Consensus 650 ~g~~~~~~~l~V~~~p 665 (805)
.|.........+...|
T Consensus 351 ~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 351 GGKNYCRNPGGFMSRP 366 (774)
T ss_pred CccccccCcCccccCC
Confidence 9999888777777665
No 421
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=81.51 E-value=6.9 Score=31.37 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=47.0
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 154 (805)
...|..|+++.++|+.+.. .|. .+-|.-.=. +..+....+=..+.+.+++. | ..-.|.+.-...+...++
T Consensus 12 ~~vV~~G~Sv~VNCStsC~-~p~-~~GLET~L~------k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~ 81 (91)
T PF03921_consen 12 EPVVPPGGSVWVNCSTSCP-QPE-KIGLETSLS------KTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASA 81 (91)
T ss_dssp EEEEETTEEEEEEEEESSS-S-S-EEEEESSSE------EEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEE
T ss_pred ccEECCCCCEEEEEcCCCC-CCC-cceEEEecC------CcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEE
Confidence 6789999999999998753 332 344532110 11111112233566778875 4 577899987655667788
Q ss_pred EEEEeccc
Q psy2166 155 TIYCSTKE 162 (805)
Q Consensus 155 ~l~V~~~~ 162 (805)
.|+|+..|
T Consensus 82 ~ItVY~~P 89 (91)
T PF03921_consen 82 NITVYKPP 89 (91)
T ss_dssp EEEEEB--
T ss_pred eeEEeCCC
Confidence 88887654
No 422
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=79.91 E-value=29 Score=27.75 Aligned_cols=76 Identities=13% Similarity=0.157 Sum_probs=45.8
Q ss_pred CCCCceEecCCCccc-ccCC--CeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEE
Q psy2166 493 AEAPKFITQISDVTQ-LKEG--QSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 569 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~-v~~G--~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 569 (805)
..+|+|..+...... ...+ +...|.+.+.+ . ...+.|+.||+.+...... ..+.+. ....|.|
T Consensus 8 ~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~--~-~~~~~W~vdg~~~g~~~~~--------~~~~~~---~~~~G~h 73 (89)
T PF06832_consen 8 GSPLRITSPPDGAVLALDPGIPERQPLVLKAAG--G-RGPVYWFVDGEPLGTTQPG--------HQLFWQ---PDRPGEH 73 (89)
T ss_pred CCCCEEEecCCCCEEEeCCCCCccceEEEEEeC--C-CCcEEEEECCEEcccCCCC--------CeEEeC---CCCCeeE
Confidence 455666665544332 2222 35666666663 3 3389999999999432211 123443 3567999
Q ss_pred EEEEEcCCcceEE
Q psy2166 570 ECRATNKYGSDVT 582 (805)
Q Consensus 570 ~C~a~n~~g~~~~ 582 (805)
+-.+....|....
T Consensus 74 ~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 74 TLTVVDAQGRSAS 86 (89)
T ss_pred EEEEEcCCCCEEE
Confidence 9999888887654
No 423
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=76.46 E-value=1.4e+02 Score=33.87 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=121.4
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCC----e--eE
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLA----G--ET 150 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~----g--~~ 150 (805)
.+..|+.+.|.+.+. |.-...+...-+|..+... .|... ..+. -.++.+|.|.-.+.-.+ + .+
T Consensus 301 ~ql~g~~I~ika~a~--GG~~llYrf~I~G~~~e~~-~Y~~~-----n~~~---w~P~~~G~Y~I~v~VKDk~S~~eyD~ 369 (667)
T PRK14081 301 PQLTDTDIELKAVAE--GGKELLYRFIIKGKESEDS-GYIRN-----NIYT---WKPKIAGKYSITLWVKDISSKGEYED 369 (667)
T ss_pred CeecCceEEEEEEec--CCCceEEEEEECCcEEeec-ccccc-----ceEE---EeeCCCceEEEEEEEEcCcCcccccc
Confidence 446899999999999 4445566644455444321 12111 1232 34567899988775432 1 12
Q ss_pred EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC-ceec-ccccccccCCCceEEEEEEEe
Q psy2166 151 FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP-QFTS-EFQHLSNLSEGEIAHFEASLI 228 (805)
Q Consensus 151 ~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~~~~~~~v~~g~~~~l~C~~~ 228 (805)
.......+...+ ..| .+.. .+.....+..|+.+.+.|.+.
T Consensus 370 ~~~v~f~i~~~~--------------------------------------~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~ 411 (667)
T PRK14081 370 KSSIDYTIEEKS--------------------------------------KEPIKIEDVILDKGKHILKGEEIKIRVIAE 411 (667)
T ss_pred eEEEEEEEcccC--------------------------------------CCCeEEEEEEECCCCceEeCCeEEEEEEec
Confidence 333444443321 112 1111 111112366899999999884
Q ss_pred eCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEE--cCCe----eEEEEEEEEEeccCCCC
Q psy2166 229 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT--NKWG----QAEISVNLECVDKSKGQ 302 (805)
Q Consensus 229 ~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~--n~~g----~~~~~~~l~v~~~~~~~ 302 (805)
.......++.-.++|..+....- .....+.+ .+.-+|.|+..+. +... .....+.+.|.+ .
T Consensus 412 gg~~~lY~f~ik~ng~~ve~~~Y------~~~~~~~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e----~ 478 (667)
T PRK14081 412 GGTNLRYSFIIKKDGKEEEKIDY------GKNNWVNF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHE----Y 478 (667)
T ss_pred CCCeEEEEEEEEECCEEEEEeec------ccccEEEE---EECCCeeEEEEEEEecccCchhcccceEEEEEEec----c
Confidence 32222233344468877653211 01123333 4578999998876 2222 235667777765 3
Q ss_pred CCe-EE--ecCCCcccccCCCeEEEEEEEeecCCCCcE--EEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEE
Q psy2166 303 PPK-FT--SHIKSLEGLKDGDSAHFECTLTPVNDPELK--VEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377 (805)
Q Consensus 303 ~p~-~~--~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~--v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y 377 (805)
.|. +. ..+... ....|+.+++.|.+++ ..... +.-+.||..+..+.- ..... +.+ .+.-+|.|
T Consensus 479 ~P~~i~~il~~~~~-~~~vg~~i~~~~~~~~--~k~v~y~y~~~~NG~~v~~t~Y----s~~~~--ysf---~P~~~GkY 546 (667)
T PRK14081 479 IPAEIDYILLPVKE-YYLVGDDIEIEVIIQN--TKDVLIKYILKINGHKVEETDY----IKNKK--YKF---IPKCSGKY 546 (667)
T ss_pred CceeeeeEEecccc-cEEeCCEEEEEEEEeC--CCeEEEEEEEEECCEEEEEeec----cccce--EEE---eecCCceE
Confidence 343 22 112222 2678999999999984 33333 333456765532111 11121 222 26678999
Q ss_pred EEEEEe
Q psy2166 378 VCRAWN 383 (805)
Q Consensus 378 ~C~a~n 383 (805)
+-.+--
T Consensus 547 ~I~V~a 552 (667)
T PRK14081 547 TIEVLA 552 (667)
T ss_pred EEEEEE
Confidence 877653
No 424
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=74.52 E-value=9.6 Score=30.51 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=43.7
Q ss_pred eEEEEEEEeecCCCCeEEEEEE--CCEE----ccCCC-CeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 709 IAHFEASLIPVGDQTMTVEFLY--NGKP----IEASH-RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 709 ~~~l~C~~~~~g~p~~~v~W~~--~g~~----l~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+.=.|.+. .|.|++.|+|.- +|.. ....+ -+.+ .+.+.+-.....|.-.-+|++..+.-....++.
T Consensus 22 v~VA~CiSa-~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV-----~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~ 95 (98)
T cd05890 22 MLVATCVSA-NGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTV-----ISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVT 95 (98)
T ss_pred EEEEEEEcC-CCcCCcEeEEEccCCCceeeeeeCCCCCCEEE-----EEEEEEeECHHHcCCEeEEEEEeccccccccEE
Confidence 356678854 499999999985 3331 11111 1111 124666677888999999999887555555555
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 96 L~v 98 (98)
T cd05890 96 LNV 98 (98)
T ss_pred ecC
Confidence 543
No 425
>KOG0200|consensus
Probab=72.76 E-value=1.8e+02 Score=33.40 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=28.3
Q ss_pred CCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 551 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
.....+.+.++...++|.|.|...+..+.......+.+.
T Consensus 114 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (609)
T KOG0200|consen 114 GTFESGLIYNVSLTEAGEYLCWTGRTVGDGPNKAFLEVS 152 (609)
T ss_pred CceEeeeeeccChhhcceeeccCCCcccccccceEEecc
Confidence 355679999999999999999998755555444444443
No 426
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=71.96 E-value=1.8e+02 Score=33.05 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=77.4
Q ss_pred cCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEc--CCe----eEE
Q psy2166 215 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN--KWG----QAE 288 (805)
Q Consensus 215 v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--~~g----~~~ 288 (805)
...|+.+.|.+.+ .|.-...+.+.-+|..+.... + .....+.. .++.+|.|...+.- ... ...
T Consensus 302 ql~g~~I~ika~a--~GG~~llYrf~I~G~~~e~~~-Y-----~~~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~ 370 (667)
T PRK14081 302 QLTDTDIELKAVA--EGGKELLYRFIIKGKESEDSG-Y-----IRNNIYTW---KPKIAGKYSITLWVKDISSKGEYEDK 370 (667)
T ss_pred eecCceEEEEEEe--cCCCceEEEEEECCcEEeecc-c-----cccceEEE---eeCCCceEEEEEEEEcCcCcccccce
Confidence 4578899999988 454456666555565443221 1 11123333 45579999887752 211 234
Q ss_pred EEEEEEEeccCCCCCC-eEEe-cCCCcccccCCCeEEEEEEEeecCCCCcEEE--EEECCEEccCCCceEEEEeCcEEEE
Q psy2166 289 ISVNLECVDKSKGQPP-KFTS-HIKSLEGLKDGDSAHFECTLTPVNDPELKVE--WFHNGKPIFHKNRVKMVSDFGFVVM 364 (805)
Q Consensus 289 ~~~~l~v~~~~~~~~p-~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~--W~~~g~~l~~~~~~~~~~~~~~~~l 364 (805)
..+.+.+...+ ..| .+.. .+........|+.+.+.|.+.+ .-...+. -.++|+.+....- . ... .+
T Consensus 371 ~~v~f~i~~~~--~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~g--g~~~lY~f~ik~ng~~ve~~~Y---~-~~~--~~ 440 (667)
T PRK14081 371 SSIDYTIEEKS--KEPIKIEDVILDKGKHILKGEEIKIRVIAEG--GTNLRYSFIIKKDGKEEEKIDY---G-KNN--WV 440 (667)
T ss_pred EEEEEEEcccC--CCCeEEEEEEECCCCceEeCCeEEEEEEecC--CCeEEEEEEEEECCEEEEEeec---c-ccc--EE
Confidence 55556555421 123 2222 1221223678999999999984 3333333 3457777643211 0 111 23
Q ss_pred EEcccCcCCceEEEEEEE
Q psy2166 365 DIAYVQSHDSGEYVCRAW 382 (805)
Q Consensus 365 ~i~~v~~~d~G~Y~C~a~ 382 (805)
.+ .+.-+|.|+-.+.
T Consensus 441 ~f---~P~~~G~Y~IeV~ 455 (667)
T PRK14081 441 NF---IPEEKGNYELEVR 455 (667)
T ss_pred EE---EECCCeeEEEEEE
Confidence 22 4577899987765
No 427
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=71.04 E-value=19 Score=28.89 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=41.6
Q ss_pred CeEEEEEEEeeCCCCCcEEEEEE--CCEE----cc-CCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEE
Q psy2166 512 QSAHFEARLTPVTDPDLVVEWFY--NGKK----LP-HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~~v~W~~--~g~~----l~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 584 (805)
..+.-.|.+.. |+|+..|+|.- +|.. .. .+..+.+ .+.+.+-.....|.-..+|++....-.....+
T Consensus 21 ~v~VA~CiSa~-GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV-----~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~ 94 (98)
T cd05890 21 KMLVATCVSAN-GKPPSVVRWDTRLKGEAEFQEIRNQNGTVTV-----ISRYRLVPSREAHKQKLTCIVNYRNDRFTDSV 94 (98)
T ss_pred eEEEEEEEcCC-CcCCcEeEEEccCCCceeeeeeCCCCCCEEE-----EEEEEEeECHHHcCCEeEEEEEeccccccccE
Confidence 44666888665 99999999984 3432 00 1112221 22355555566777799999987644444444
Q ss_pred EEE
Q psy2166 585 SLK 587 (805)
Q Consensus 585 ~l~ 587 (805)
.|.
T Consensus 95 ~L~ 97 (98)
T cd05890 95 TLN 97 (98)
T ss_pred Eec
Confidence 443
No 428
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=71.04 E-value=7 Score=28.73 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=16.5
Q ss_pred cCCCCeEEEEEEEeecCCCCeEEEEEE
Q psy2166 704 LSEGEIAHFEASLIPVGDQTMTVEFLY 730 (805)
Q Consensus 704 v~~G~~~~l~C~~~~~g~p~~~v~W~~ 730 (805)
|..|+.++|. |.|...|.|+|
T Consensus 2 v~~G~N~TL~------Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV------GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe------CCCCCceEEEE
Confidence 5668888887 87777899994
No 429
>KOG0200|consensus
Probab=68.06 E-value=19 Score=41.17 Aligned_cols=122 Identities=16% Similarity=0.064 Sum_probs=70.6
Q ss_pred EEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeec-CCcccccCC
Q psy2166 628 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE-FQHLSNLSE 706 (805)
Q Consensus 628 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~-~~~~~~v~~ 706 (805)
.+.+..+...+.|.|+|.+.| ......+. +... ..+.+... +... ....
T Consensus 14 ~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~--~~~~-----------------------~~~~~~~~~~~~~-~~~~ 63 (609)
T KOG0200|consen 14 FLIIDSVVPGDKGFYTCLVSN----INLIISLD--DIVI-----------------------HRPILLAGENANP-NTVV 63 (609)
T ss_pred eEEEEEEEecCCccEEEEEec----CceeeEee--cccC-----------------------cccccccCCCCCc-ceee
Confidence 377778889999999999999 21122222 1110 12222222 2222 4555
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEcc----CCC-C-----------eEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIE----ASH-R-----------IRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~----~~~-~-----------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
+....+ +. ..+.+.+.|.+...... ... . .+.. +.....+.+.++...+.|.|.|.+.
T Consensus 64 ~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~ 137 (609)
T KOG0200|consen 64 TVGVPL---AF--SIPQPFIKWGTNLEIECEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTG 137 (609)
T ss_pred ccccee---ee--ecCCCcceeeeeecccccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCC
Confidence 666666 32 34477888887553210 000 0 0011 3355679999999999999999998
Q ss_pred cCCccEEEEEEEEEE
Q psy2166 771 NKWGQAEISVNLECV 785 (805)
Q Consensus 771 N~~G~~~~~~~l~V~ 785 (805)
+..+.......+.+.
T Consensus 138 ~~~~~~~~~~~~~~~ 152 (609)
T KOG0200|consen 138 RTVGDGPNKAFLEVS 152 (609)
T ss_pred CcccccccceEEecc
Confidence 855555555555543
No 430
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=65.65 E-value=70 Score=25.75 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=44.5
Q ss_pred ccCCCeEEEEEEEeecCCCCc-EEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPEL-KVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 394 (805)
+..|..+.+.|... -+.| .+.|.-.= .+..+....+=..+.+.+++. | ..-.|.+.-.......++.|
T Consensus 15 V~~G~Sv~VNCSts---C~~p~~~GLET~L------~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~~I 83 (91)
T PF03921_consen 15 VPPGGSVWVNCSTS---CPQPEKIGLETSL------SKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASANI 83 (91)
T ss_dssp EETTEEEEEEEEES---SSS-SEEEEESSS------EEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEEEE
T ss_pred ECCCCCEEEEEcCC---CCCCCcceEEEec------CCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEEee
Confidence 88999999999984 3433 45554210 111111222223466778875 3 57789998765566778899
Q ss_pred EEEeccc
Q psy2166 395 KCFGKGG 401 (805)
Q Consensus 395 ~V~~~~~ 401 (805)
+|+..|.
T Consensus 84 tVY~~Pe 90 (91)
T PF03921_consen 84 TVYKPPE 90 (91)
T ss_dssp EEEB--S
T ss_pred EEeCCCC
Confidence 9986653
No 431
>KOG1026|consensus
Probab=61.76 E-value=11 Score=42.88 Aligned_cols=290 Identities=13% Similarity=0.041 Sum_probs=144.5
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEec-CcEEEEEEcccccCCCeEEEEEEEeCCeeEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTAD-FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 153 (805)
+.....++...+.|.+. +.+...+.|.++...+..+-+...... -....|.+.+....+.|.+.|...+..-.....
T Consensus 61 n~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 138 (774)
T KOG1026|consen 61 NITEIFIENGQLLCIVS--GNDVENYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLT 138 (774)
T ss_pred hHHHHHHhhhhhccccc--CCCcccchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccccc
Confidence 45556788899999998 455458999998766554432211110 011136677777778888888877653221111
Q ss_pred EEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCC-CCCCCCCCCC---------C--Cceecccc-cccccCCCce
Q psy2166 154 TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQP-AGVPDSEDGR---------P--PQFTSEFQ-HLSNLSEGEI 220 (805)
Q Consensus 154 ~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~--p~~~~~~~-~~~~v~~g~~ 220 (805)
.-+.+..+... .-...+.. ...+...+.+ ....+..... . -.+..... ....+..|..
T Consensus 139 ~l~~~~~~~~~-------~~~~~~~~--~~~e~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 209 (774)
T KOG1026|consen 139 ELSLVGNPFTC-------SCSIRWLD--RYREDGFCVPYRGLACLNFLSNGTVANESIQLCGEIENRIRAANLTVEEGSS 209 (774)
T ss_pred hhhhccCCCCc-------chhhhHHh--hhcccCCCCCchhhHHHhhcCCceehhhhhhhhcchhhhhhhhhhhhcccch
Confidence 11111111100 00000000 0000000000 0000000000 0 00000000 0123678999
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCC
Q psy2166 221 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSK 300 (805)
Q Consensus 221 ~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~ 300 (805)
+++.|.. .+.|.+.+.|+.++............-. . ....+.+ +.|.+.|..+....++...+..
T Consensus 210 ~~~~c~~--~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~-~~~~~~~--------~~c~~E~~~~~~~~~v~~~~~~--- 274 (774)
T KOG1026|consen 210 ITLKCSQ--AGIPVPCHYWFPNCLASSNTNQTSSLCR-S-ECEVLEN--------DLCIAENAVARSNPSILLVVDL--- 274 (774)
T ss_pred heeeeec--ccCCCcceeeecccccccCCCccccccc-c-cceeeec--------hhhHHHHhhhhcCceeeeEEec---
Confidence 9999998 7888899999998776554332111111 1 1111111 8999999888877777666542
Q ss_pred CCCCeEEecCCCcccccCCCeEEEEEEEee-cCCCCcEEEEEECCEEccCCCceEEEEeC-cEEEEEEcccCcCCceEEE
Q psy2166 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTP-VNDPELKVEWFHNGKPIFHKNRVKMVSDF-GFVVMDIAYVQSHDSGEYV 378 (805)
Q Consensus 301 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~g~~l~~~~~~~~~~~~-~~~~l~i~~v~~~d~G~Y~ 378 (805)
++.... +.... ++ .-.|...+ .+.|.+...|..++..+...........+ ..+ +........+.|.|.
T Consensus 275 --p~~~~~-~~~~~----~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C-~~~~~~~h~~~~~~~ 344 (774)
T KOG1026|consen 275 --PKAEVL-LCSPL----SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQC-LPWNDPPHSHNGNYT 344 (774)
T ss_pred --cccccc-CCCCc----cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCC-cccCcCcccccCcce
Confidence 222211 11110 11 22344332 14667788899887765432222111111 011 222333567899999
Q ss_pred EEEEeCceeeEEEEEEEEEecc
Q psy2166 379 CRAWNKYGEDFTRATIKCFGKG 400 (805)
Q Consensus 379 C~a~n~~g~~~~~~~l~V~~~~ 400 (805)
|.+.+..|.........+...|
T Consensus 345 ~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 345 LFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred eeecccCccccccCcCccccCC
Confidence 9999998877666555554433
No 432
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=58.36 E-value=83 Score=24.19 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=39.4
Q ss_pred cCCCCeEEEEEEEeecC-CCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE--EEcCCccEEEEE
Q psy2166 704 LSEGEIAHFEASLIPVG-DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR--ATNKWGQAEISV 780 (805)
Q Consensus 704 v~~G~~~~l~C~~~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~--a~N~~G~~~~~~ 780 (805)
...|..+.|..... + .....+.|...+...... .... ......|.|+.. |.|..|......
T Consensus 11 ~~~~~~v~f~~~~~--~~~~~~~~~W~fgdg~~~~~---------~~~~-----~~y~~~G~y~v~l~v~n~~g~~~~~~ 74 (79)
T smart00089 11 GVAGESVTFTATSS--DDGSIVSYTWDFGDGTSSTG---------PTVT-----HTYTKPGTYTVTLTVTNAVGSASATV 74 (79)
T ss_pred CCCCCEEEEEEECC--CCCCeEEEEEEeCCCCccCC---------CCEE-----EEeCCCcEEEEEEEEEcCCCcEEEEE
Confidence 44788999999876 3 356788898744321111 1111 233467888754 689888655555
Q ss_pred EEEE
Q psy2166 781 NLEC 784 (805)
Q Consensus 781 ~l~V 784 (805)
.+.|
T Consensus 75 ~i~v 78 (79)
T smart00089 75 TVVV 78 (79)
T ss_pred EEEE
Confidence 5554
No 433
>PHA03112 IL-18 binding protein; Provisional
Probab=57.74 E-value=49 Score=28.90 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=21.2
Q ss_pred ccCCCeEEEEEEEeeCCCC-CcEEEEEECC
Q psy2166 508 LKEGQSAHFEARLTPVTDP-DLVVEWFYNG 536 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p-~~~v~W~~~g 536 (805)
..+|+++.|+|.+-+. .| ---+.|.+++
T Consensus 35 ~k~~~~vvL~C~gcs~-fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSY-FPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccC-CCCceEEEEEcCC
Confidence 4679999999999842 34 3578999765
No 434
>PHA03240 envelope glycoprotein M; Provisional
Probab=54.82 E-value=21 Score=33.06 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=47.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--------CCE---Ec---cC---CC---------CeEEEeeCcEEEEEEcC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--------NGK---PI---EA---SH---------RIRTVHAFGMVVLEILG 756 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--------~g~---~l---~~---~~---------~~~~~~~~~~~~L~i~~ 756 (805)
++++|+.|+|.-.=- -.|--.+.|++ +|. ++ .+ +. ...+...-..++|.|.+
T Consensus 34 t~r~G~nVTLga~~~--lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 34 TTREGDPLLLGGGHG--LGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ccccCCceeeCCccc--CCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 789999999985431 24667899998 111 11 01 00 11111222335899999
Q ss_pred CCCCCCEEEEEEEEcCCccE----EEEEEEEEE
Q psy2166 757 TKIEDTGVYTCRATNKWGQA----EISVNLECV 785 (805)
Q Consensus 757 v~~~d~G~Y~C~a~N~~G~~----~~~~~l~V~ 785 (805)
|...|+|.|.-.---..|.. .+.++|+|.
T Consensus 112 vn~sd~~nYcr~k~~~~g~~e~pt~sC~~l~~r 144 (258)
T PHA03240 112 LNLSDAGEYCRKKCPPKGDCEFPTMSCFRLILR 144 (258)
T ss_pred EeecCcchhhhccCCCCCCcCCCcceeeeEeee
Confidence 99999999965433334432 235677773
No 435
>PHA03112 IL-18 binding protein; Provisional
Probab=51.10 E-value=1.3e+02 Score=26.47 Aligned_cols=28 Identities=18% Similarity=0.038 Sum_probs=21.7
Q ss_pred ccCCCCeEEEEEEEeecCC-CC-eEEEEEECC
Q psy2166 703 NLSEGEIAHFEASLIPVGD-QT-MTVEFLYNG 732 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~-p~-~~v~W~~~g 732 (805)
..++|+++.|+|.+. +. |. ..+.|.+++
T Consensus 34 p~k~~~~vvL~C~gc--s~fp~fS~lYWl~gn 63 (141)
T PHA03112 34 PTKETEKVVLECRGC--SYFPKFSYVYWLIGN 63 (141)
T ss_pred ccCCCCEEEEEEECc--cCCCCceEEEEEcCC
Confidence 346799999999987 44 64 578999765
No 436
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=50.28 E-value=86 Score=23.41 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=37.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE--EEcCCccEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR--ATNKWGQAE 777 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~--a~N~~G~~~ 777 (805)
.+..|+.++|..... .-....+.|..++... ...+....-+. ...|.|+.. |.|..|..+
T Consensus 7 ~~~~g~~v~f~~~~~--~g~~~~y~W~fgd~~~--------~~~~~~~t~ty-----~~~G~y~V~ltv~n~~g~~t 68 (69)
T PF00801_consen 7 YVPTGQPVTFTASSS--DGSPVTYSWDFGDNGT--------VSTGSSVTHTY-----SSPGTYTVTLTVTNGVGSAT 68 (69)
T ss_dssp CEBTTSEEEEEETTT--TSSECEEEEE-SSESE--------EECSSEEEEEE-----SSSEEEEEEEEEEETTSEEE
T ss_pred EEcCCCEEEEEEEcc--CCCCeEEEEEECCCCc--------cccCCCEEEEc-----CCCeEEEEEEEEEECCCCcC
Confidence 678899999999873 3455689999988111 11222222233 258888754 678777654
No 437
>PHA03240 envelope glycoprotein M; Provisional
Probab=49.88 E-value=20 Score=33.14 Aligned_cols=66 Identities=24% Similarity=0.338 Sum_probs=39.6
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--------CCE---ec----C-CCCc---eEEEecC-------cEEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--------NGK---PL----E-LGSR---FKTTADF-------GFVTLDL 128 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--------~g~---~i----~-~~~~---~~~~~~~-------~~~~L~I 128 (805)
.+.+.+|++|+|.-.-- -.|.-.+.|++ +|. ++ + ..+| ...+..+ .+++|.|
T Consensus 32 evt~r~G~nVTLga~~~--lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i 109 (258)
T PHA03240 32 EHTTREGDPLLLGGGHG--LGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLII 109 (258)
T ss_pred ecccccCCceeeCCccc--CCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEE
Confidence 35678999999875422 25666899998 121 11 0 0111 1111111 3458999
Q ss_pred cccccCCCeEEEEE
Q psy2166 129 TEVYDRDQGIYTCR 142 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~ 142 (805)
.++..+|.|+|.-.
T Consensus 110 ~~vn~sd~~nYcr~ 123 (258)
T PHA03240 110 AHLNLSDAGEYCRK 123 (258)
T ss_pred EEEeecCcchhhhc
Confidence 99999999998433
No 438
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=46.78 E-value=29 Score=37.95 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred ccCCCeEEEEEEEeeCC--CCCcEEEEEE--------CCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEE--EEEc
Q psy2166 508 LKEGQSAHFEARLTPVT--DPDLVVEWFY--------NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC--RATN 575 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g--~p~~~v~W~~--------~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n 575 (805)
+..++.+.|...+.... .....+.|.. ....+.... ...........|.|..-..+..+.|.. .|.+
T Consensus 205 vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~ 283 (440)
T PF02010_consen 205 VNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWS-SMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTD 283 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 66777777776666322 3456889987 111111000 001111123357777655666677765 4444
Q ss_pred CCcce-EEEEEEEEeeeee
Q psy2166 576 KYGSD-VTKASLKCVSKTN 593 (805)
Q Consensus 576 ~~g~~-~~~~~l~V~~~~~ 593 (805)
..+.. .....+.+..+|.
T Consensus 284 ~~~~~~~a~~~~~~n~pP~ 302 (440)
T PF02010_consen 284 SSGSSGSASISFTVNAPPS 302 (440)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 44433 4555666655553
No 439
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=46.39 E-value=1.2e+02 Score=22.62 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=37.7
Q ss_pred CeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 723 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 723 ~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
.....|+++|+.+..- .+. ...+...+-.=.....++.|..++.+....|..-......|
T Consensus 6 ~v~H~W~~~g~~~~~i-~l~-i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 6 TVYHRWYKNGKLVARI-PLP-ISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEEECCEEEEEE-EEe-ccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 3567899999865311 011 11122222222334457999999999999998888777766
No 440
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=45.68 E-value=1.3e+02 Score=22.56 Aligned_cols=60 Identities=10% Similarity=0.145 Sum_probs=37.3
Q ss_pred CcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 527 DLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 527 ~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
.....|+++|+.+..- .+.+. .+...+..=......+.|..++.+....|..-....+.|
T Consensus 6 ~v~H~W~~~g~~~~~i-~l~i~-g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 6 TVYHRWYKNGKLVARI-PLPIS-GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEEECCEEEEEE-EEecc-CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 3468899999876321 11111 122222333333457899999999999998877766655
No 441
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=42.24 E-value=1.4e+02 Score=22.26 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=35.4
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECC-EEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEE--EEEcCCcceE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNG-KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC--RATNKYGSDV 581 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g-~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~g~~~ 581 (805)
+..|+.++|..... ......+.|..++ .....+ .....+. ...|.|.. .|.|..|...
T Consensus 8 ~~~g~~v~f~~~~~--~g~~~~y~W~fgd~~~~~~~---------~~~t~ty-----~~~G~y~V~ltv~n~~g~~t 68 (69)
T PF00801_consen 8 VPTGQPVTFTASSS--DGSPVTYSWDFGDNGTVSTG---------SSVTHTY-----SSPGTYTVTLTVTNGVGSAT 68 (69)
T ss_dssp EBTTSEEEEEETTT--TSSECEEEEE-SSESEEECS---------SEEEEEE-----SSSEEEEEEEEEEETTSEEE
T ss_pred EcCCCEEEEEEEcc--CCCCeEEEEEECCCCccccC---------CCEEEEc-----CCCeEEEEEEEEEECCCCcC
Confidence 78899999999883 3455699999888 111122 2212222 34798854 5557766543
No 442
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=38.57 E-value=48 Score=24.49 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=14.7
Q ss_pred cCCCceEEEEEEEeeCCCCCeEEEEEE
Q psy2166 215 LSEGEIAHFEASLIPVGDQTMTVEFLY 241 (805)
Q Consensus 215 v~~g~~~~l~C~~~~~~~p~~~i~W~k 241 (805)
+..|+.++| .|++...+.|||
T Consensus 2 v~~G~N~TL------~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTL------VGPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEE------eCCCCCceEEEE
Confidence 456777777 366667899994
No 443
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=38.03 E-value=2.7e+02 Score=24.21 Aligned_cols=72 Identities=15% Similarity=0.281 Sum_probs=43.4
Q ss_pred ccCCCCeEEEEEEEeecCCCC---eEEEEEE----------CCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT---MTVEFLY----------NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~---~~v~W~~----------~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+..|++|.+.|.....|+=. -.|+|+. +|..+.+++++-+. ....+|--.+.. +|.-.....+
T Consensus 43 ~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dGkG~L~~~~g~~~~pND~Y~L~--~~~FRLYYTS~s-~~~q~idv~v 119 (137)
T PF12988_consen 43 KIKKGETVEIRCELKREGNYADTRYTIRYFQPDGKGTLRMDDGTVLLPNDRYPLE--KEVFRLYYTSRS-DDQQTIDVYV 119 (137)
T ss_dssp S--TTEEEEEEEEEEESS--SS---EEEEE-SSS-EEEEETTS-EE-TTSEEE-S---SEEEEEEEE-S-SS-EEEEEEE
T ss_pred ccCCCCEEEEEEEEecCceecccEEEEEEEeecCCEEEEecCCcEeccccceecC--cCEEEEEEecCC-CCCceeEEEE
Confidence 789999999999998666533 4677775 55667777666543 234566666655 6666778888
Q ss_pred EcCCccEE
Q psy2166 770 TNKWGQAE 777 (805)
Q Consensus 770 ~N~~G~~~ 777 (805)
...+|+..
T Consensus 120 eDnfGq~~ 127 (137)
T PF12988_consen 120 EDNFGQEQ 127 (137)
T ss_dssp EETTTEEE
T ss_pred EeCCCCEE
Confidence 88888543
No 444
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=36.87 E-value=2.8e+02 Score=24.10 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=39.7
Q ss_pred cCCCCceecCCCcEEEEEEEecCCC---CCceEEEEE----------CCEecCCCCceEEEecCcEEEEEEcccccCCCe
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKND---PNLKIEWIF----------NGKPLELGSRFKTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~---p~~~v~W~k----------~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G 137 (805)
.+|-.-.+..|++|.++|.....|+ ....+.|+- ||..+.++++|.+..+ ..+|.-.+.. +|+-
T Consensus 37 tmPVpk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dGkG~L~~~~g~~~~pND~Y~L~~~--~FRLYYTS~s-~~~q 113 (137)
T PF12988_consen 37 TMPVPKKIKKGETVEIRCELKREGNYADTRYTIRYFQPDGKGTLRMDDGTVLLPNDRYPLEKE--VFRLYYTSRS-DDQQ 113 (137)
T ss_dssp E----SS--TTEEEEEEEEEEESS--SS---EEEEE-SSS-EEEEETTS-EE-TTSEEE-S-S--EEEEEEEE-S-SS-E
T ss_pred EeccccccCCCCEEEEEEEEecCceecccEEEEEEEeecCCEEEEecCCcEeccccceecCcC--EEEEEEecCC-CCCc
Confidence 3444457899999999999985433 344566653 4555566666665543 3455554444 5666
Q ss_pred EEEEEEEeCCeeE
Q psy2166 138 IYTCRAWNLAGET 150 (805)
Q Consensus 138 ~Y~C~a~n~~g~~ 150 (805)
...-.+....|+.
T Consensus 114 ~idv~veDnfGq~ 126 (137)
T PF12988_consen 114 TIDVYVEDNFGQE 126 (137)
T ss_dssp EEEEEEEETTTEE
T ss_pred eeEEEEEeCCCCE
Confidence 6777777666654
No 445
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=35.11 E-value=58 Score=35.58 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred ccCCCCeEEEEEEEeecCC----CCeEEEEEE--------CCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEE--E
Q psy2166 703 NLSEGEIAHFEASLIPVGD----QTMTVEFLY--------NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC--R 768 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~----p~~~v~W~~--------~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~ 768 (805)
.+..++.+.|...+. +. ....++|.. ....+...... .........|.|..-.....+.|+. .
T Consensus 204 ~vn~~~~l~L~~~~~--~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~ 280 (440)
T PF02010_consen 204 KVNPSERLVLQASCS--SCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSM-TTTGSSSSNLVIDPGVLEPGSTYTFRLT 280 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCEEEEEEEe--CCCCcCCCEEEEEEEeeccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 488888888888876 43 346788887 11112111111 1111223357777666666777876 4
Q ss_pred EEcCCccE-EEEEEEEE
Q psy2166 769 ATNKWGQA-EISVNLEC 784 (805)
Q Consensus 769 a~N~~G~~-~~~~~l~V 784 (805)
|.+..|.. ..++.+.+
T Consensus 281 v~~~~~~~~~a~~~~~~ 297 (440)
T PF02010_consen 281 VTDSSGSSGSASISFTV 297 (440)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 55554443 44444444
No 446
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=33.83 E-value=2.2e+02 Score=21.79 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=38.2
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEE--EEEcCCcceEEEEE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC--RATNKYGSDVTKAS 585 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~g~~~~~~~ 585 (805)
...|..+.|.....+. .....+.|...+.....+. .... .....|.|+- .+.|..|.......
T Consensus 11 ~~~~~~v~f~~~~~~~-~~~~~~~W~fgdg~~~~~~---------~~~~-----~y~~~G~y~v~l~v~n~~g~~~~~~~ 75 (79)
T smart00089 11 GVAGESVTFTATSSDD-GSIVSYTWDFGDGTSSTGP---------TVTH-----TYTKPGTYTVTLTVTNAVGSASATVT 75 (79)
T ss_pred CCCCCEEEEEEECCCC-CCeEEEEEEeCCCCccCCC---------CEEE-----EeCCCcEEEEEEEEEcCCCcEEEEEE
Confidence 3478899999887632 3567888976443211111 1111 2346788854 45688885555555
Q ss_pred EEE
Q psy2166 586 LKC 588 (805)
Q Consensus 586 l~V 588 (805)
+.|
T Consensus 76 i~v 78 (79)
T smart00089 76 VVV 78 (79)
T ss_pred EEE
Confidence 554
No 447
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=26.95 E-value=1.1e+02 Score=27.69 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.2
Q ss_pred EEEEEcccccCCCeEEEEEEEeCCee
Q psy2166 124 VTLDLTEVYDRDQGIYTCRAWNLAGE 149 (805)
Q Consensus 124 ~~L~I~~~~~~D~G~Y~C~a~n~~g~ 149 (805)
.-|.|.+.+.+|+|.|.-++.-....
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~~ 149 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGAN 149 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCCC
Confidence 36999999999999999999876533
No 448
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=25.77 E-value=3.5e+02 Score=21.63 Aligned_cols=35 Identities=11% Similarity=0.348 Sum_probs=25.7
Q ss_pred CceecCCCcEEEEEEEecCCCC---CceEEEEECCEec
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDP---NLKIEWIFNGKPL 109 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p---~~~v~W~k~g~~i 109 (805)
...+..|+.++|...+...|.. ...+.|+.++..+
T Consensus 12 ~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~ 49 (101)
T PF07705_consen 12 PSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV 49 (101)
T ss_dssp -SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE
T ss_pred CCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee
Confidence 3477899999999999855443 3468899988876
No 449
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=24.84 E-value=1.7e+02 Score=26.46 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=28.6
Q ss_pred EEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2166 627 VILDILYCYEENSGVYECRATNKYGSDVTKASLKC 661 (805)
Q Consensus 627 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 661 (805)
..|.|.+...+|+|.|.-+++-........+.+.+
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 34999999999999999999988766666665554
No 450
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=24.57 E-value=2.4e+02 Score=22.61 Aligned_cols=32 Identities=9% Similarity=0.320 Sum_probs=25.3
Q ss_pred ccCCCeEEEEEEEeeCCCC---CcEEEEEECCEEc
Q psy2166 508 LKEGQSAHFEARLTPVTDP---DLVVEWFYNGKKL 539 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p---~~~v~W~~~g~~l 539 (805)
+..|+.++|...+...|.. ...+.|+.+|..+
T Consensus 15 ~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~ 49 (101)
T PF07705_consen 15 VVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV 49 (101)
T ss_dssp EETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE
T ss_pred ccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee
Confidence 7789999999999866654 3578888888877
No 451
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=22.46 E-value=3.6e+02 Score=20.63 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=36.2
Q ss_pred CCeEEEEEEEeecCC-CCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE--EEcCCccEEE-EEEE
Q psy2166 707 GEIAHFEASLIPVGD-QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR--ATNKWGQAEI-SVNL 782 (805)
Q Consensus 707 G~~~~l~C~~~~~g~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~--a~N~~G~~~~-~~~l 782 (805)
|+.+.|..... +. ....+.|.+++....... ..... ......|.|+.. |.|..|.... +..+
T Consensus 14 ~~~v~~~~~~~--~~~~~~~~~W~fgdg~~~~~~-------~~~~~-----~~y~~~G~y~v~l~v~d~~g~~~~~~~~V 79 (81)
T cd00146 14 GASVTFSASDS--SGGSIVSYKWDFGDGEVSSSG-------EPTVT-----HTYTKPGTYTVTLTVTNAVGSSSTKTTTV 79 (81)
T ss_pred CccEEEEEEeC--CCCCEEEEEEEeCCCCccccC-------CCceE-----EEcCCCcEEEEEEEEEeCCCCEEEEEEEE
Confidence 88999998876 32 567899998664111111 01111 123467888654 6777765544 5544
Q ss_pred E
Q psy2166 783 E 783 (805)
Q Consensus 783 ~ 783 (805)
.
T Consensus 80 ~ 80 (81)
T cd00146 80 V 80 (81)
T ss_pred E
Confidence 4
Done!