RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2166
(805 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 296 bits (760), Expect = 4e-91
Identities = 139/743 (18%), Positives = 245/743 (32%), Gaps = 200/743 (26%)
Query: 63 FAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
P FI PL+ E +GE P+ L+ +V+ P ++I W L +K
Sbjct: 3 MEPPYFIEPLEHVEAAIGE--PITLQCKVDG--TPEIRIAWYKEHTKLRSAPAYKMQFKN 58
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
+L + +V D G YTC+A N G +S
Sbjct: 59 NVASLVINKVDHSDVGEYTCKAENSVGAVASSAV-------------------------- 92
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
L + + PP F + + + + G FE G + + V +
Sbjct: 93 -----LVIKERKL-------PPSFARKLKDVH-ETLGFPVAFECR--INGSEPLQVSWYK 137
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
+G+ ++ ++T + L+IL T G Y C A+N G A S L +
Sbjct: 138 DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLT-L-SEHE 195
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
PP F S++ G+S F+C +T +K+ W + + I KM
Sbjct: 196 VPPFFDLKPVSVDLAL-GESGTFKCHVTG--TAPIKITWAKDNREIRPGGNYKMTLVENT 252
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENA 421
+ + V D+G+Y C A N G+D A +
Sbjct: 253 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG-------------------------- 286
Query: 422 QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQ 481
V E P+FI ++ +K+ + +E C+
Sbjct: 287 -----------VQEPPRFIKKLEPSRIVKQDEHTRYE------------CK--------- 314
Query: 482 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH 541
+P + V K+ +
Sbjct: 315 -----IGGSPEIK----------VLWYKDETE-------------------------IQE 334
Query: 542 GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK-------------- 587
++R + +L++ E+SG Y C A N GS + SLK
Sbjct: 335 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 394
Query: 588 -CVSKTNLILE-----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
+ ++ LE + +V W + ++L G +Y+ + + + IL + G
Sbjct: 395 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGE 454
Query: 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHL 701
Y+C+A+N GSD S+ + PP+F + +
Sbjct: 455 YQCKASNDVGSDTCVGSIT-------LKA--------------------PPRFVKKLSDI 487
Query: 702 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI-EASHRIRTVHAFGMVVLEILGTKIE 760
S GE +A++ G + ++V + + I S I ++ + L+ +
Sbjct: 488 S-TVVGEEVQLQATIE--GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPA 544
Query: 761 DTGVYTCRATNKWGQAEISVNLE 783
+ G YTC+ N+ G E L
Sbjct: 545 NAGKYTCQIKNEAGTQECFATLS 567
Score = 248 bits (635), Expect = 4e-73
Identities = 109/621 (17%), Positives = 189/621 (30%), Gaps = 171/621 (27%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
+E P F LK P+ E ++ L++ W +G+ L+ + +T+
Sbjct: 96 KERKLPPSFARKLKDV-HETLGFPVAFECRING--SEPLQVSWYKDGELLKDDANLQTSF 152
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
TL + + G Y C A N G +S +
Sbjct: 153 IHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLT---------------------- 190
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 239
+ SE PP F + + L+ GE F+ G + + +
Sbjct: 191 --------------L--SEHEVPPFFDLKPVSVD-LALGESGTFKC--HVTGTAPIKITW 231
Query: 240 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKS 299
+ + I + L +L D G YTC A+N G+ S L V +
Sbjct: 232 AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG-VQE- 289
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
PP+F ++ +K + +EC + PE+KV W+ + I ++ +M
Sbjct: 290 ---PPRFIKKLEPSRIVKQDEHTRYECKIGG--SPEIKVLWYKDETEIQESSKFRMSFVE 344
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELE 419
V+++ + DSG+Y C A N G + ++K
Sbjct: 345 SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK------------------------ 380
Query: 420 NAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFP 479
V E P F + V +G H E CE
Sbjct: 381 -------------VKEPPVFRKKPHPVE-TLKGADVHLE------------CE------- 407
Query: 480 SQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL 539
Q P + V+ K+ + L
Sbjct: 408 -------LQGTPPFQ----------VSWHKDKRE-------------------------L 425
Query: 540 PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ 599
G +Y+ + + + IL + G Y+C+A+N GSD S+ + + +
Sbjct: 426 RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLS 485
Query: 600 --------------------LPEVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEEN 638
V WF + ++ + I L N
Sbjct: 486 DISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPAN 545
Query: 639 SGVYECRATNKYGSDVTKASL 659
+G Y C+ N+ G+ A+L
Sbjct: 546 AGKYTCQIKNEAGTQECFATL 566
Score = 219 bits (559), Expect = 2e-62
Identities = 86/521 (16%), Positives = 176/521 (33%), Gaps = 80/521 (15%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+PP F ++ +E G+ +C + PE+++ W+ + KM
Sbjct: 4 EPPYFIEPLEHVE-AAIGEPITLQCKVDG--TPEIRIAWYKEHTKLRSAPAYKMQFKNNV 60
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENA 421
+ I V D GEY C+A N G + A + + L P +++++
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLV------IKERKLPPSFARKLKDVHET 114
Query: 422 QGQQPVAQAAPVAEAP---------KFITQISDVTQLKEGQSAHFEARLTPVTDPDL--- 469
G + P + + +++ A ++ +
Sbjct: 115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATL--QILQTDQSHVGQY 172
Query: 470 VCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLV 529
C + + + + P F + V L G+S F+ +T +
Sbjct: 173 NCSASNPLGTASSSAKL-TLSEHEVPPFFDLKPVSVD-LALGESGTFKCHVTG--TAPIK 228
Query: 530 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL--- 586
+ W + +++ G Y+ L +L + ++G Y C A+N G D A L
Sbjct: 229 ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 288
Query: 587 ------KCVSKTNLILESQ------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVI 628
K + + ++ + + +V W+ + ++ ++R + +
Sbjct: 289 EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 348
Query: 629 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSED 688
L++ E+SG Y C A N GS + SLK + E
Sbjct: 349 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK-------VKE------------------ 383
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
PP F + + +G H E G V + + + + + + + +
Sbjct: 384 --PPVFRKKPHPVE-TLKGADVHLECE--LQGTPPFQVSWHKDKRELRSGKKYKIMSENF 438
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
+ + IL D G Y C+A+N G ++ + +P
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT--LKAP 477
Score = 190 bits (484), Expect = 4e-52
Identities = 88/434 (20%), Positives = 146/434 (33%), Gaps = 104/434 (23%)
Query: 49 AGKYQ---RQPSGPEETFA---------KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDP 96
G+Y P G + A P F + L + + V
Sbjct: 169 VGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPV-SVDLALGESGTFKCHVTG--TA 225
Query: 97 NLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+KI W + + + G +K T TL + +V D G YTC A N+AG+ S +
Sbjct: 226 PIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285
Query: 157 YCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 216
+Q PP+F + + +
Sbjct: 286 G----------------------VQ-------------------EPPRFIKKLEPSRIVK 304
Query: 217 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY 276
+ E +E + G + V + + I+ S + R + VLE+ +ED+G Y
Sbjct: 305 QDEHTRYECKI--GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362
Query: 277 TCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL 336
TC A N G A S +L+ V +PP F +E G H EC L P
Sbjct: 363 TCEAHNAAGSASSSTSLK-VK----EPPVFRKKPHPVE-TLKGADVHLECELQ--GTPPF 414
Query: 337 KVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396
+V W + + + + K++S+ + I V S D GEY C+A N G D +I
Sbjct: 415 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT- 473
Query: 397 FGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAH 456
+ P+F+ ++SD++ G+
Sbjct: 474 ------------------------------------LKAPPRFVKKLSDIS-TVVGEEVQ 496
Query: 457 FEARLTPVTDPDLV 470
+A + +
Sbjct: 497 LQATIEGAEPISVA 510
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 225 bits (576), Expect = 5e-63
Identities = 113/787 (14%), Positives = 203/787 (25%), Gaps = 172/787 (21%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKN-DPNLKIEWIFNGKPL-----ELGSRFKTTA 119
+ + E + ++ + D + W + + E ++
Sbjct: 139 QYYEADVNKE-HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 197
Query: 120 DFGFVTLDLTEVYDRD-QGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
L + EV D Y CR + T T +TK L+
Sbjct: 198 S---GELHIREVGPEDGYKSYQCRTKH----RLTGETRLSATKGRLVI------------ 238
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 238
P + + S G
Sbjct: 239 ---------------TEPISSAVPKVVSLAKFDMKTYSGSSTMALLC--PAQGYPVPVFR 281
Query: 239 FLYNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
+ + + V L I +ED+G Y C N G + L V
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT-V 340
Query: 297 DKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356
P + + G A F C T +P V W +GK I H
Sbjct: 341 T----APLSAKIDPPTQT-VDFGRPAVFTCQYT--GNPIKTVSWMKDGKAIGHSES---- 389
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIR 416
V+ I V+ D G Y C N A +K + P +
Sbjct: 390 ------VLRIESVKKEDKGMYQCFVRNDRESAEASAELK------LGGRFDPPVIRQAFQ 437
Query: 417 ELENAQGQQPV----AQAAPVAEAPKFITQISDVTQLKEGQ----SAHFEARLTPVTDPD 468
E G A P E ++ +G+ + ++ + D
Sbjct: 438 EETMEPGPSVFLKCVAGGNPTPE----------ISWELDGKKIANNDRYQVGQYVTVNGD 487
Query: 469 LVCEL-FSNFFPSQG---------QQPVAQAA---PVAEAPKFITQISDVTQLKEGQSAH 515
+V L ++ + G + VA+ + V P +I Q+ + G++
Sbjct: 488 VVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP-YIRQMEKKA-IVAGETLI 545
Query: 516 FEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 575
+ P + W + + LP + + F + ++I ++ + Y C A N
Sbjct: 546 VTCPVA--GYPIDSIVWERDNRALPINRKQKVFPNGTLIIENV--ERNSDQATYTCVAKN 601
Query: 576 KYGSDVTK---------------------------ASLKCVSKTNLILESQLPEVEWFYN 608
+ G +L C ++W +
Sbjct: 602 QEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGG----DLPLNIDWTLD 657
Query: 609 GKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL 667
G+ + + +L I ++G + C A N G L
Sbjct: 658 GQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPL-------N 710
Query: 668 ILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 727
+ PP++ E + ++G A E G V
Sbjct: 711 VYV--------------------PPRWILEPTDKA-FAQGSDAKVECKAD--GFPKPQVT 747
Query: 728 FLYNGKPIEASHRIRTVHAFGMV---VLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784
+ ++ V L + + + G Y C A N G +V +
Sbjct: 748 WKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807
Query: 785 VVWSPSQ 791
V
Sbjct: 808 VQAHHHH 814
Score = 219 bits (559), Expect = 8e-61
Identities = 111/809 (13%), Positives = 210/809 (25%), Gaps = 194/809 (23%)
Query: 49 AGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGK 107
G + P+ PVF+ + +E + P +I WI +G
Sbjct: 22 CGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGN--PMPEIIWIRSDGT 79
Query: 108 PLELGSRFKTTADFGFVTLDLTEV------YDRDQGIYTCRAWNLAGETFTSTTIYCSTK 161
+ + + G L + +Y C A N G +
Sbjct: 80 AVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDV------ 131
Query: 162 ESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIA 221
+ ++ + G A
Sbjct: 132 ----------------------------------HVRAVVAQYYEADVNKEH-VIRGNSA 156
Query: 222 HFEASLIP-VGDQTMTVEFLYNGKPIEASHRI--RTVHAFGMVVLEILGTKIEDT-GVYT 277
+ + V D V + + + L I ED Y
Sbjct: 157 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 216
Query: 278 CRATNKWGQAE-----ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVN 332
CR ++ + S P + ++ + C
Sbjct: 217 CRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--G 274
Query: 333 DPELKVEWFHNGKPIFHKNRVKMVSDFGFV--VMDIAYVQSHDSGEYVCRAWNKYGEDFT 390
P W+ + K V + V + I DSG+Y+C N G +
Sbjct: 275 YPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 334
Query: 391 RATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLK 450
+ V T +
Sbjct: 335 ETVLT-------------------------------------VTAPLSAKIDPPTQT-VD 356
Query: 451 EGQSAHFEARLT--------------PVTDPD--LVCELFSNFFPS---------QGQQP 485
G+ A F + T + + L + + +
Sbjct: 357 FGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLR---IESVKKEDKGMYQCFVRNDRE 413
Query: 486 VAQA------APVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL 539
A+A + P + T ++ G S + +P + W +GKK+
Sbjct: 414 SAEASAELKLGGRFDPPVIRQAFQEET-MEPGPSVFLKCV--AGGNPTPEISWELDGKKI 470
Query: 540 PHGHRYR-----TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT-- 592
+ RY+ T + + L+I + + G+Y+C A +K G A L
Sbjct: 471 ANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI 530
Query: 593 ------------NLILESQ-----LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY 635
LI+ + + W + + LP + + F + ++I ++
Sbjct: 531 RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENV--ER 588
Query: 636 EENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFT 695
+ Y C A N+ G ++ +L ++ + P
Sbjct: 589 NSDQATYTCVAKNQEGYS---------ARGSLEVQVMVL----------------PRIIP 623
Query: 696 SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF-GMVVLEI 754
F+ G+ S +P GD + +++ +G+ I I T VL I
Sbjct: 624 FAFEEGP-AQVGQYLTLHCS-VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTI 681
Query: 755 LGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ G +TC A N G + + L
Sbjct: 682 EAVEASHAGNFTCHARNLAGHQQFTTPLN 710
Score = 202 bits (515), Expect = 6e-55
Identities = 111/649 (17%), Positives = 186/649 (28%), Gaps = 132/649 (20%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
P + V + + + L + P W +
Sbjct: 241 PISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--GYPVPVFRWYKFIEGTTRKQAVVLN 298
Query: 119 ADFGFV--TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEG 176
V TL + + D G Y C N G T + +
Sbjct: 299 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA---------------- 342
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT 236
P + + + G A F G+ T
Sbjct: 343 -------------------------PLSAKIDPPTQT-VDFGRPAVFTCQYT--GNPIKT 374
Query: 237 VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
V ++ +GK I S VL I K ED G+Y C N AE S L+ +
Sbjct: 375 VSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAELK-L 423
Query: 297 DKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM- 355
+ PP + ++ G S +C +P ++ W +GK I + +R ++
Sbjct: 424 G-GRFDPPVIRQAFQEET-MEPGPSVFLKCV--AGGNPTPEISWELDGKKIANNDRYQVG 479
Query: 356 ----VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPES 411
V+ ++I V ++D G Y C A +K G A + VY
Sbjct: 480 QYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN------VY-------G 526
Query: 412 LARIRELENAQGQ--QPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL 469
L IR++E + + PVA P + ++ ++ + + L
Sbjct: 527 LPYIRQMEKKAIVAGETLIVTCPVAGYPID-----SIVWERDNRALPINRKQKVFPNGTL 581
Query: 470 V--------------CELFSNFFPSQGQQPVAQAA-PVAEAPKFITQISDVTQLKEGQSA 514
+ C N +G V P+ I + + GQ
Sbjct: 582 IIENVERNSDQATYTCVA-KN---QEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYL 637
Query: 515 HFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRA 573
+ D L ++W +G+ + + +L I ++G + C A
Sbjct: 638 TLHCSVPG-GDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHA 696
Query: 574 TNKYGSDVTKASLKCVSKTNLILESQ--------------------LPEVEWFYNGKKLP 613
N G L ILE P+V W P
Sbjct: 697 RNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTP 756
Query: 614 HGHRYRTFHDFGIV---ILDILYCYEENSGVYECRATNKYGSDVTKASL 659
++ D V L + + N G Y C A N GS ++ +
Sbjct: 757 GEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
Score = 201 bits (513), Expect = 1e-54
Identities = 117/718 (16%), Positives = 219/718 (30%), Gaps = 164/718 (22%)
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
+++ + ++ A G +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAAN------------------------------ 30
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYNGK 244
P D + P F E + + S A E G+ + +G
Sbjct: 31 ---------PPDADQKGPVFLKEPTNRIDFSNSTGAEIECKAS--GNPMPEIIWIRSDGT 79
Query: 245 PIEASHRIRTVHAFGMVVLEILGTKIEDT------GVYTCRATNKWGQAEISVNLECVDK 298
+ +R + + G L + ED VY C A N++G IS + V
Sbjct: 80 AVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHAQVYACLARNQFGSI-ISRD---VHV 133
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTP-VNDPELKVEWFHNGKPIF-----HKNR 352
+ + + + G+SA +C + V D V W + + + + +
Sbjct: 134 RAVVAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGK 192
Query: 353 VKMVSDFGFVVMDIAYVQSHDS-GEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPES 411
++ G + I V D Y CR ++ + + K + S P+
Sbjct: 193 YLVLPS-GELH--IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249
Query: 412 LARIR-ELENAQGQQPV-----AQAAPVAE-----APKFITQISDVTQLKEGQSAHFEAR 460
++ + +++ G + AQ PV + T+ V +
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI 309
Query: 461 LTPVTDPDL---VCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 517
+ D +C + +N S G + V V T + G+ A F
Sbjct: 310 IKDAVVEDSGKYLCVV-NN---SVGGESVETVLTVTAPLSAKIDPPTQT-VDFGRPAVFT 364
Query: 518 ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKY 577
+ T P V W +GK + H +L I +E+ G+Y+C N
Sbjct: 365 CQYTGN--PIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDR 412
Query: 578 GSDVTKASLK------------------CVSKTNLILE-----SQLPEVEWFYNGKKLPH 614
S A LK ++ L+ + PE+ W +GKK+ +
Sbjct: 413 ESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 472
Query: 615 GHRYR-----TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL 669
RY+ T + + L+I + + G+Y+C A +K G A L +
Sbjct: 473 NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN-------VY 525
Query: 670 ESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVE 727
P + + GE + G ++
Sbjct: 526 G--------------------LPYIRQ----MEKKAIVAGETLIVTCPVA--GYPIDSIV 559
Query: 728 FLYNGKPIEASHRIRTVHAFGMVVLEILG-TKIEDTGVYTCRATNKWGQ-AEISVNLE 783
+ + + + + + + V G L I + D YTC A N+ G A S+ ++
Sbjct: 560 WERDNRALPINRKQK-VFPNG--TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQ 614
Score = 196 bits (499), Expect = 9e-53
Identities = 96/585 (16%), Positives = 172/585 (29%), Gaps = 116/585 (19%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
+ + +++ ++ A G ++ N D+ + P F + + A
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQ---KGPVFLKEPTNRIDFSNSTGA 57
Query: 323 HFECTLTPVNDPELKVEWFH-NGKPIFHKNRVKMVSDFG----FVVMDIAYVQSHDSGEY 377
EC + +P ++ W +G + ++ +S G Y Q + Y
Sbjct: 58 EIECKASG--NPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVY 115
Query: 378 VCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAP 437
C A N++G +R Y + E + R G V + +
Sbjct: 116 ACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR--------GNSAVIKCLIPSFVA 167
Query: 438 KFITQIS---DVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQ----------- 483
F+ +S D + A ++ + + +L P G
Sbjct: 168 DFVEVVSWHTDEEENYF-PGAEYDGKYLVLPSGELH---IREVGPEDGYKSYQCRTKHRL 223
Query: 484 -----------QPVAQAAPVAEAPKFITQIS-DVTQLKEGQSAHFEARLTPVTDPDLVVE 531
+ V + PK ++ D+ + P V
Sbjct: 224 TGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--GYPVPVFR 281
Query: 532 WFYNGKKLPHGHRYRTFHDFGIV--ILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589
W+ + V L I E+SG Y C N G + + L
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 341
Query: 590 SKTNLILESQ--------------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVIL 629
+ + ++ + V W +GK + H +L
Sbjct: 342 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VL 391
Query: 630 DILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDG 689
I +E+ G+Y+C N S A LK L +
Sbjct: 392 RIESVKKEDKGMYQCFVRNDRESAEASAELK--------LGGRFD--------------- 428
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-----TV 744
PP FQ + + G + G+ T + + +GK I + R + TV
Sbjct: 429 -PPVIRQAFQEET-MEPGPSVFLKCV--AGGNPTPEISWELDGKKIANNDRYQVGQYVTV 484
Query: 745 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
+ + L I D G+Y C A +K G AE S L V+
Sbjct: 485 NGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN--VYGL 527
Score = 140 bits (354), Expect = 2e-34
Identities = 84/560 (15%), Positives = 146/560 (26%), Gaps = 177/560 (31%)
Query: 49 AGKYQ---RQPSGPEETFA---------KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDP 96
G YQ R E A PV + E + + L+ P
Sbjct: 401 KGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEE-TMEPGPSVFLKCVAGGN--P 457
Query: 97 NLKIEWIFNGKPLELGSRFK-----TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151
+I W +GK + R++ T L++T V+ D G+Y C A + G
Sbjct: 458 TPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE 517
Query: 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
S + + P
Sbjct: 518 HSAKL----------------------NVYG-------------------LPYIRQ---- 532
Query: 212 LSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG-T 268
+ + GE + G ++ + + + + + + + V G L I
Sbjct: 533 MEKKAIVAGETLIVTCPVA--GYPIDSIVWERDNRALPINRKQK-VFPNG--TLIIENVE 587
Query: 269 KIEDTGVYTCRATNKWGQ-AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECT 327
+ D YTC A N+ G A S+ ++ P+ + G C+
Sbjct: 588 RNSDQATYTCVAKNQEGYSARGSLEVQ-----VMVLPRIIPFAFEEGPAQVGQYLTLHCS 642
Query: 328 LTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV-VMDIAYVQSHDSGEYVCRAWNKYG 386
+ D L ++W +G+ I + V+ I V++ +G + C A N G
Sbjct: 643 VPG-GDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG 701
Query: 387 EDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDV 446
+ V P++I + +D
Sbjct: 702 HQQFTTPLN-------------------------------------VYVPPRWILEPTDK 724
Query: 447 TQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVT 506
+G A E C+ A P + VT
Sbjct: 725 A-FAQGSDAKVE------------CK--------------ADGFPKPQ----------VT 747
Query: 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENS 566
K E + + G L + + N
Sbjct: 748 WKKAVGDTPGEYK--------------------DLKKSDNIRVEEG--TLHVDNIQKTNE 785
Query: 567 GVYECRATNKYGSDVTKASL 586
G Y C A N GS ++ +
Sbjct: 786 GYYLCEAINGIGSGLSAVIM 805
Score = 93.1 bits (231), Expect = 1e-19
Identities = 42/247 (17%), Positives = 65/247 (26%), Gaps = 53/247 (21%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
P I E Q L L V D L I+W +G+ + T+
Sbjct: 617 VLPRIIPFAFEEGPAQVGQYLTLHCSVP-GGDLPLNIDWTLDGQAISEDLGITTSRVGRR 675
Query: 124 V-TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
L + V G +TC A NLAG +T + +
Sbjct: 676 GSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPL----------------------NVYV 713
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
PP++ E + ++G A E G V +
Sbjct: 714 -------------------PPRWILEPTDKA-FAQGSDAKVECKAD--GFPKPQVTWKKA 751
Query: 243 GKPIEASHRIRTVHAFGMV---VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKS 299
++ V L + + + G Y C A N G +V + V
Sbjct: 752 VGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQA- 810
Query: 300 KGQPPKF 306
Sbjct: 811 ---HHHH 814
Score = 76.5 bits (188), Expect = 2e-14
Identities = 39/283 (13%), Positives = 77/283 (27%), Gaps = 60/283 (21%)
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK------------------TNLILE 597
+++ + ++ A GS A+ + T +E
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 598 -----SQLPEVEWF-YNGKKLPHGHRYRTFHDFG-IVILDIL---YCYEENSGVYECRAT 647
+ +PE+ W +G + R G +V Y E ++ VY C A
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 648 NKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 707
N++GS +S+ + ++ G
Sbjct: 121 NQFGSI--------ISRDVHVRAVVAQYYEADVNKE-------------------HVIRG 153
Query: 708 EIAHFEASLIP-VGDQTMTVEFLYNGKPIEASHRI--RTVHAFGMVVLEILGTKIEDT-G 763
A + + V D V + + + L I ED
Sbjct: 154 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYK 213
Query: 764 VYTCRATNKWGQAE-ISVNLECVVWSPSQTKLVYSLFEVPQPD 805
Y CR ++ +S +V + + V + + + D
Sbjct: 214 SYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFD 256
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 222 bits (566), Expect = 6e-62
Identities = 103/784 (13%), Positives = 195/784 (24%), Gaps = 196/784 (25%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
F V + + + + N + + G+R
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD 180
Query: 119 ADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
+ GF + G+ C A + I
Sbjct: 181 SKKGFT---IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGY---------------- 221
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 238
R H LS GE + + +
Sbjct: 222 ----------------------RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 259
Query: 239 FLYNGKPIEASHRIR--------TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
+ Y + + + + L I G D G+YTC A++ + S
Sbjct: 260 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 319
Query: 291 VNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHK 350
+ +K F S ++SL G+ P +++W+ NG P+
Sbjct: 320 TFVRVHEK---PFVAFGSGMESLVEATVGERVRIPAKYL--GYPPPEIKWYKNGIPLESN 374
Query: 351 NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPE 410
+ +K V+ I V D+G Y N ++ +
Sbjct: 375 HTIKAGH-----VLTIMEVSERDTGNYTVILTNPISKEKQSHVV---------------- 413
Query: 411 SLARIRELENAQGQQPVAQAAPVAEAPKFITQ--ISDVTQLKEGQSAHFEARLTPVTDPD 468
L V P+ + IS V + G +
Sbjct: 414 ------SLV-------------VYVPPQIGEKSLISPVDSYQYGTTQTLT---------- 444
Query: 469 LVCELFSNFFPSQGQQPVAQAAPVAEAPKFIT-QISDVTQLKEGQSAHFEARLTPVTDPD 527
C A P P I + S +
Sbjct: 445 --CT--------------VYAIP---PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEW 485
Query: 528 LVVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
VE F G K+ + +++ + ++ S +Y+C A NK G S
Sbjct: 486 RSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISF 545
Query: 587 KCVSKTNLILESQL-------------------PEVEWFYNGKKLPHGHRYR-------- 619
+ L+ + + W+ G + H
Sbjct: 546 HVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKN 605
Query: 620 ------------TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL 667
+ I+I+++ ++ G Y C A ++ L
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVR------QL 659
Query: 668 ILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 727
+ + P T ++ + S GE + G+ +
Sbjct: 660 TVLER-----------------VAPTITGNLENQT-TSIGESIEVSCTAS--GNPPPQIM 699
Query: 728 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVW 787
+ + + + I G L I + ED G+YTC+A + G A++ ++
Sbjct: 700 WFKDNETLVEDSGIVLKD--GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF--IIE 755
Query: 788 SPSQ 791
+
Sbjct: 756 GAQE 759
Score = 194 bits (495), Expect = 2e-52
Identities = 90/732 (12%), Positives = 179/732 (24%), Gaps = 158/732 (21%)
Query: 135 DQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGV 194
++ C A S ++
Sbjct: 8 AVALWLCVETRAASVGLPSVSL-------------------------------------- 29
Query: 195 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR- 253
P+ + + L+ + +++L+ + R+
Sbjct: 30 ------DLPRLSIQKDILT-IKANTTLQITCRGQR------DLDWLWPNNQSGSEQRVEV 76
Query: 254 --TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIK 311
L I DTG Y C + I V ++ +
Sbjct: 77 TECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVV 136
Query: 312 SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQS 371
+ + C + N + + + NR+ S GF I
Sbjct: 137 YITE-NKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT---IPSYMI 192
Query: 372 HDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ-------GQ 424
+G C A + I +Y L P + E
Sbjct: 193 SYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTEL 252
Query: 425 QPVAQ---AAPVAEAPKFITQISDVTQLKEGQSAHFEARLT--PVTDPDL---VCELFSN 476
P ++ D+ + F + LT VT D C S+
Sbjct: 253 NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA-SS 311
Query: 477 FFPSQGQQPVAQAAPVAEAPK--FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY 534
+ + V E P F + + + + G+ A+ P ++W+
Sbjct: 312 ---GLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLG--YPPPEIKWYK 366
Query: 535 NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK-CVSKTN 593
NG L H + H +L I+ E ++G Y TN + + V
Sbjct: 367 NGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPP 421
Query: 594 LILESQLPE-------------------------VEWFYNGKKL---------------- 612
I E L + W++ ++
Sbjct: 422 QIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYP 481
Query: 613 -----------------PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 655
+ +++ + ++ S +Y+C A NK G
Sbjct: 482 CEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGER 541
Query: 656 KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRP-PQFTSEFQHLSNLSEGEIAHFEA 714
S + L+ + ++ + + D T L
Sbjct: 542 VISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPI-----HVG 596
Query: 715 SLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
L + + + N S ++++E+ ++D G Y C A ++
Sbjct: 597 ELPTPVCKNLDTLWKLNATMFSNSTN-------DILIMELKNASLQDQGDYVCLAQDRKT 649
Query: 775 QAEISVNLECVV 786
+ V + V
Sbjct: 650 KKRHCVVRQLTV 661
Score = 139 bits (350), Expect = 4e-34
Identities = 82/585 (14%), Positives = 149/585 (25%), Gaps = 165/585 (28%)
Query: 41 VQEVEHALAGKYQ---RQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEA--------Q 89
+ V + G Y ++ V KP G +EA
Sbjct: 294 IDGVTRSDQGLYTCAASSGLMTKKNSTF--VRVHEKPFVAFGSGMESLVEATVGERVRIP 351
Query: 90 VEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
+ P +I+W NG PLE K L + EV +RD G YT N +
Sbjct: 352 AKYLGYPPPEIKWYKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTVILTNPISK 406
Query: 150 TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPA-------GVPDSEDGRP 202
S + SL+ P I ++ +P P
Sbjct: 407 EKQSHVV------SLVV--YVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIP-----PP 453
Query: 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMV 261
+Q + + ++ +VE G IE + ++ +
Sbjct: 454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
V ++ + +Y C A NK G+ E ++ P+ T ++ + +S
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTR-----GPEIT--LQPDMQPTEQES 566
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV--------------------SDFGF 361
CT + W+ G + ++ S
Sbjct: 567 VSLWCTAD--RSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDI 624
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENA 421
++M++ D G+YVC A ++ + + + +
Sbjct: 625 LIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ------LTV----------------- 661
Query: 422 QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQ 481
AP + + T G+S C
Sbjct: 662 ----------LERVAPTITGNLENQT-TSIGESIEVS------------CT--------- 689
Query: 482 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH 541
A P + + K+ + L
Sbjct: 690 -----ASGNPPPQ----------IMWFKDNE-------------------------TLVE 709
Query: 542 GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
L I +E+ G+Y C+A + G +A
Sbjct: 710 DSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 752
Score = 132 bits (334), Expect = 3e-32
Identities = 56/397 (14%), Positives = 111/397 (27%), Gaps = 50/397 (12%)
Query: 4 ATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQP----SGP 59
TN S + L P + V+ G Q + P
Sbjct: 400 LTNPISKEKQSHVVS--------LVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIP 451
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPN-LKIEWIFNGKPLELGS-RFKT 117
P I + +P + P +E G +E+ +F
Sbjct: 452 -----PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFAL 506
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGL 177
L +Y C A N G + + + + P +
Sbjct: 507 IEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEIT---LQPDMQPTE 563
Query: 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
++ L + R T L L + +
Sbjct: 564 QESVSLWCTADRST----------FENLTWYKLGPQPLPI-----HVGELPTPVCKNLDT 608
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
+ N S ++++E+ ++D G Y C A ++ + V + +
Sbjct: 609 LWKLNATMFSNSTN-------DILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ-LT 660
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS 357
+ P T ++++ G+S CT + +P ++ WF + + + + + +
Sbjct: 661 VLERVAPTITGNLENQT-TSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKD 717
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ I V+ D G Y C+A + G A
Sbjct: 718 GNRNLT--IRRVRKEDEGLYTCQACSVLGCAKVEAFF 752
Score = 87.5 bits (216), Expect = 7e-18
Identities = 29/252 (11%), Positives = 70/252 (27%), Gaps = 44/252 (17%)
Query: 567 GVYECRATNKYGSDVTKASLK----CVSKTNLILES----QL-----PEVEWFYNGKKLP 613
++ C T + SL + K L +++ Q+ +++W + +
Sbjct: 10 ALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLDWLWPNNQSG 69
Query: 614 HGHRYR---TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILE 670
R L I ++G Y+C + V ++
Sbjct: 70 SEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ---------- 119
Query: 671 SQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 730
+ + D + +E ++ + L + + +++ Y
Sbjct: 120 ------DYRSPFIASVSDQHGVVYITE-------NKNKTVVIPC-LGSISNLNVSLCARY 165
Query: 731 -NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
+ + +RI G I I G+ C A + + + VV
Sbjct: 166 PEKRFVPDGNRISWDSKKG---FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYR 222
Query: 790 SQTKLVYSLFEV 801
++ +
Sbjct: 223 IYDVVLSPSHGI 234
Score = 65.2 bits (158), Expect = 5e-11
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
P L+ + + + + +P +I W + + L S
Sbjct: 666 APTITGNLENQ-TTSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGNR-- 720
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTST--TIYCSTKESLIERTQH 170
L + V D+G+YTC+A ++ G I + +++ +ERT H
Sbjct: 721 NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERTHH 768
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 184 bits (468), Expect = 2e-52
Identities = 57/353 (16%), Positives = 110/353 (31%), Gaps = 59/353 (16%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
+ F P F+ L E + L+ +V I W + + + + +
Sbjct: 2 IDPFTGPHFVEYLSWEVTGEC--NVLLKCKVAN-IKKETHIVWYKDEREISVDEKHDFKD 58
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
G TL +TE +D GIY + G+ + + + L+
Sbjct: 59 --GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSA--- 113
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 239
+ S +EG + + + + V +
Sbjct: 114 ---------------------TDLKIQST-------AEGIQLYSF---VTYYVEDLKVNW 142
Query: 240 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL------ 293
+NG I S R++T + L+I D G Y + + +V+L
Sbjct: 143 SHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYD 202
Query: 294 ----------ECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHN 343
+ K + + +++G + + C + DP +V W N
Sbjct: 203 EAYAEFQRLKQAAIAEKNRARVLGGLPDVVT-IQEGKALNLTCNVW--GDPPPEVSWLKN 259
Query: 344 GKPIFHKNRVKMVSDF-GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
K + + + + I V + DSG+Y NKYG + + T+
Sbjct: 260 EKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312
Score = 177 bits (450), Expect = 5e-50
Identities = 46/322 (14%), Positives = 98/322 (30%), Gaps = 45/322 (13%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
P F+ +S ++ + + ++ + + W+ + +++ ++
Sbjct: 4 PFTGPHFVEYLSW--EVTGECNVLLKCKVAN-IKKETHIVWYKDEREISVDEKHDFKD-- 58
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASL------------------------- 586
GI L I ++++G+YE + G D ++ L
Sbjct: 59 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKI 118
Query: 587 KCVSKTNLILESQL-----PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
+ ++ + +V W +NG + + R +T + L I + G
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 178
Query: 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHL 701
Y + L + E Q + +E R +
Sbjct: 179 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQ------RLKQAAIAEKNRARVLGGLPDVV 232
Query: 702 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIE 760
+ + EG+ + + GD V +L N K + + A I G
Sbjct: 233 T-IQEGKALNLTCN--VWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA 289
Query: 761 DTGVYTCRATNKWGQAEISVNL 782
D+G Y NK+G +
Sbjct: 290 DSGKYGLVVKNKYGSETSDFTV 311
Score = 151 bits (384), Expect = 7e-41
Identities = 56/395 (14%), Positives = 110/395 (27%), Gaps = 90/395 (22%)
Query: 198 EDGRPPQFTSEFQHLSN-LSEGEIAHFEASLIPVGDQTMT-VEFLYNGKPIEASHRIRTV 255
+ P F ++LS ++ + + + T + + + + I +
Sbjct: 3 DPFTGPHFV---EYLSWEVTGECNVLLKCKV--ANIKKETHIVWYKDEREISVDEKHDFK 57
Query: 256 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL---ECVDKSKGQPPKFTSHIKS 312
G+ L I +D G+Y + G+ + + L + K
Sbjct: 58 D--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATD 115
Query: 313 LEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH 372
L+ + +T +LKV W HNG I + +RVK + + I +
Sbjct: 116 LKIQSTAEGIQLYSFVT-YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPN 174
Query: 373 DSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAP 432
D G+YV ++ + + + A+ Q+ A
Sbjct: 175 DKGKYVMELFDGKTGHQKTVDLSG-----------------QAYDEAYAEFQRLKQAAIA 217
Query: 433 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPV 492
+ + + DV ++EG++ + P
Sbjct: 218 EKNRARVLGGLPDVVTIQEGKALNLTCN--------------------------VWGDPP 251
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
E V+ LK + + H F
Sbjct: 252 PE----------VSWLKNEK---------ALA---------------SDDHCNLKFEAGR 277
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
I +SG Y NKYGS+ + ++
Sbjct: 278 TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312
Score = 129 bits (326), Expect = 3e-33
Identities = 41/293 (13%), Positives = 75/293 (25%), Gaps = 60/293 (20%)
Query: 2 VKATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEE 61
V + +G + L K++ +E + + + +
Sbjct: 78 VILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQST---------------- 121
Query: 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
E L+ +LK+ W NG + R KT
Sbjct: 122 -----------------AEGIQLYSFV---TYYVEDLKVNWSHNGSAIRYSDRVKTGVTG 161
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
+ L + E D+G Y ++ + + + Q K EK
Sbjct: 162 EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK-- 219
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
+ + + EG+ + + GD V +L
Sbjct: 220 -------------------NRARVLGGLPDVVTIQEGKALNLTCN--VWGDPPPEVSWLK 258
Query: 242 NGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
N K + + A I G D+G Y NK+G +
Sbjct: 259 NEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 311
Score = 113 bits (285), Expect = 8e-28
Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 22/194 (11%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
+ W+ + +++ ++ GI L I ++++G+YE + G D ++ L
Sbjct: 37 THIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL- 93
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
+ + L S E S +
Sbjct: 94 ------------------VDEAFKELMMEVCKKIALSATDLKIQSTAE-GIQLYSFVTYY 134
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+ + V + +NG I S R++T + L+I D G Y + + +V
Sbjct: 135 VEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV 194
Query: 781 NLECVVWSPSQTKL 794
+L + + +
Sbjct: 195 DLSGQAYDEAYAEF 208
Score = 111 bits (279), Expect = 5e-27
Identities = 41/312 (13%), Positives = 73/312 (23%), Gaps = 87/312 (27%)
Query: 433 VAEAPKFITQISDVTQLKEGQSAHFEARLT---PVTD------------------PDLVC 471
P F+ +S ++ + + ++ T D +C
Sbjct: 4 PFTGPHFVEYLSW--EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC 61
Query: 472 ELF-SNFFPS------------QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA 518
L + F +G+ + + ++ ++
Sbjct: 62 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKI-ALSATDLKIQS 120
Query: 519 RLTPVT--------DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYE 570
+ DL V W +NG + + R +T + L I + G Y
Sbjct: 121 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 180
Query: 571 CRATNKYGSDVTKASLKCVSKTNLILESQL------------------------------ 600
+ L + E Q
Sbjct: 181 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 240
Query: 601 -----------PEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATN 648
PEV W N K L F I +SG Y N
Sbjct: 241 NLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 300
Query: 649 KYGSDVTKASLK 660
KYGS+ + ++
Sbjct: 301 KYGSETSDFTVS 312
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 182 bits (464), Expect = 3e-52
Identities = 77/332 (23%), Positives = 122/332 (36%), Gaps = 54/332 (16%)
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
A P F + L + + V +KI W + + + G +K T
Sbjct: 3 MAPPFFDLKPVS-VDLALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVEN 59
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
TL + +V D G YTC A N+AG+ S + +E
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKD--SCSAQLGVQE-------------------- 97
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
PP+F + + + + E +E + G + V + +
Sbjct: 98 -------------------PPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKD 136
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
I+ S + R + VLE+ +ED+G YTC A N G A S +L+ V +
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK-VKE---- 191
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PP F +E G H EC L P +V W + + + + K++S+
Sbjct: 192 PPVFRKKPHPVE-TLKGADVHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLT 248
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ I V S D GEY C+A N G +I
Sbjct: 249 SIHILNVDSADIGEYQCKASNDVGSYTCVGSI 280
Score = 171 bits (434), Expect = 5e-48
Identities = 57/311 (18%), Positives = 110/311 (35%), Gaps = 54/311 (17%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
P F + V L G+S F+ +T + + W + +++ G Y+
Sbjct: 4 APPFFDLKPVSVD-LALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTKASL---------KCVSKTNLILESQ----- 599
L +L + ++G Y C A+N G D A L K + + ++ + +
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYE 120
Query: 600 -------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
+V W+ + ++ ++R + +L++ E+SG Y C A N GS
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180
Query: 653 DVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 712
+ SLK + E PP F + + +G H
Sbjct: 181 ASSSTSLK-------VKE--------------------PPVFRKKPHPVE-TLKGADVHL 212
Query: 713 EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 772
E G V + + + + + + + + + + IL D G Y C+A+N
Sbjct: 213 ECE--LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASND 270
Query: 773 WGQAEISVNLE 783
G ++
Sbjct: 271 VGSYTCVGSIT 281
Score = 167 bits (425), Expect = 7e-47
Identities = 72/385 (18%), Positives = 124/385 (32%), Gaps = 109/385 (28%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
PP F + + L+ GE F+ G + + + + + I +
Sbjct: 5 PPFFDLKPVSVD-LALGESGTFKCH--VTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
L +L D G YTC A+N G+ S L V + PP+F ++ +K +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG-VQE----PPRFIKKLEPSRIVKQDEH 116
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381
+EC + PE+KV W+ + I ++ +M V+++ + DSG+Y C A
Sbjct: 117 TRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 174
Query: 382 WNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFIT 441
N G + ++K V E P F
Sbjct: 175 HNAAGSASSSTSLK-------------------------------------VKEPPVFRK 197
Query: 442 QISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQ 501
+ V +G H E CE Q P +
Sbjct: 198 KPHPVE-TLKGADVHLE------------CE--------------LQGTPPFQ------- 223
Query: 502 ISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 561
V+ K+ + +L G +Y+ + + + IL
Sbjct: 224 ---VSWHKDKR-------------------------ELRSGKKYKIMSENFLTSIHILNV 255
Query: 562 YEENSGVYECRATNKYGSDVTKASL 586
+ G Y+C+A+N GS S+
Sbjct: 256 DSADIGEYQCKASNDVGSYTCVGSI 280
Score = 147 bits (374), Expect = 7e-40
Identities = 65/377 (17%), Positives = 113/377 (29%), Gaps = 121/377 (32%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PP F S++ L G+S F+C +T +K+ W + + I KM
Sbjct: 5 PPFFDLKPVSVD-LALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
+ + V D+G+Y C A N G+D A +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG--------------------------- 94
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQG 482
V E P+FI ++ +K+ + +E C+
Sbjct: 95 ----------VQEPPRFIKKLEPSRIVKQDEHTRYE------------CK---------- 122
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG 542
+P V K+ +
Sbjct: 123 ----IGGSP---EI-------KVLWYKDETE-------------------------IQES 143
Query: 543 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI--LESQ- 599
++R + +L++ E+SG Y C A N GS + SLK
Sbjct: 144 SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVE 203
Query: 600 -----------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
+V W + ++L G +Y+ + + + IL + G Y
Sbjct: 204 TLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 263
Query: 643 ECRATNKYGSDVTKASL 659
+C+A+N GS S+
Sbjct: 264 QCKASNDVGSYTCVGSI 280
Score = 118 bits (297), Expect = 1e-29
Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 31/189 (16%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
++ W + +++ G Y+ L +L + ++G Y C A+N G D A L
Sbjct: 35 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 94
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
V + PP+F + + + + E +E + G
Sbjct: 95 -VQE--------------------------PPRFIKKLEPSRIVKQDEHTRYECKI--GG 125
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+ V + + I+ S + R + VLE+ +ED+G YTC A N G A S
Sbjct: 126 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185
Query: 781 NLECVVWSP 789
+L+ V P
Sbjct: 186 SLK--VKEP 192
Score = 117 bits (295), Expect = 2e-29
Identities = 48/264 (18%), Positives = 92/264 (34%), Gaps = 55/264 (20%)
Query: 40 KVQEVEHALAGKYQ---RQPSGPEETFA------KPVFIVPLKPEFKLGEAQPLHLEAQV 90
V +V AG+Y +G + A P FI L+P + + + E ++
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 91 EPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGET 150
P +K+ W + ++ S+F+ + L++ + D G YTC A N AG
Sbjct: 124 G--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 151 FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ 210
+ST++ K+++ PP F +
Sbjct: 182 SSSTSL----------------------KVKE-------------------PPVFRKKPH 200
Query: 211 HLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKI 270
+ +G H E G V + + + + + + + + + + IL
Sbjct: 201 PVE-TLKGADVHLECE--LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS 257
Query: 271 EDTGVYTCRATNKWGQAEISVNLE 294
D G Y C+A+N G ++
Sbjct: 258 ADIGEYQCKASNDVGSYTCVGSIT 281
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 180 bits (459), Expect = 2e-48
Identities = 95/758 (12%), Positives = 172/758 (22%), Gaps = 189/758 (24%)
Query: 80 EAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV--------------- 124
E + + L P++ W +
Sbjct: 13 EGKEVLLLVHNLPQHLF--GYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70
Query: 125 -TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+L + + D G YT +T +
Sbjct: 71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQF-------------------------- 104
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLY 241
P+ + + + + + F E T +
Sbjct: 105 -------------RVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDA-----TYLWWV 146
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA---EISVNLECVDK 298
N + + S R++ + L + DT Y C N + +N+
Sbjct: 147 NNQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNV----- 199
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
P T + + G++ + C +P + WF NG +
Sbjct: 200 -LYGPDAPTISPLNTS-YRSGENLNLSCHAAS--NPPAQYSWFVNGTFQQSTQELF---- 251
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIREL 418
I + ++SG Y C+A N + I
Sbjct: 252 -------IPNITVNNSGSYTCQAHNSDTGLNRTTV--------TTITVYAEPPKPFITSN 296
Query: 419 EN--AQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA-----RLTPVTDPDL-- 469
+ + + VA + L L VT D+
Sbjct: 297 NSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGP 356
Query: 470 -VCELFSNFFPSQGQQPVAQAA-PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD 527
C + N V P T T + G + +P
Sbjct: 357 YECGI-QN---ELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAAS--NPP 410
Query: 528 LVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
W +G H + I +I E+NSG+Y C+A N
Sbjct: 411 AQYSWLIDGNIQQHTQE--------LFISNIT---EKNSGLYTCQANNSASGHSRTTVKT 459
Query: 588 -------------------CVSKTNLILE----SQLPEVEWFYNGKKLPHGHRYRTFHDF 624
K + +Q W+ NG+ LP R + +
Sbjct: 460 ITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGN 519
Query: 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVP 684
L + ++ Y C N ++ + + L+
Sbjct: 520 R--TLTLFNVTRNDARAYVCGIQNSVSANRSDP---------VTLDVLYG---------- 558
Query: 685 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 744
P S G + + + + NG P + +
Sbjct: 559 ------PDTPIISPPDSS-YLSGANLNLSCH--SASNPSPQYSWRINGIPQQHTQV---- 605
Query: 745 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
L I + G Y C +N S+
Sbjct: 606 -------LFIAKITPNNNGTYACFVSNLATGRNNSIVK 636
Score = 175 bits (444), Expect = 2e-46
Identities = 89/649 (13%), Positives = 158/649 (24%), Gaps = 178/649 (27%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
P + + + + + E + W N + L + R + + T
Sbjct: 111 PKPSISSNNSKPVEDKDAVAFTCEPE---TQDATYLWWVNNQSLPVSPRLQLSNGNR--T 165
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
L L V D Y C N S ++
Sbjct: 166 LTLFNVTRNDTASYKCETQNPVSAR-RSDSV----------------------------- 195
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP 245
L P T + S GE + + + NG
Sbjct: 196 ILNVLYG---------PDAPTISPLNTS-YRSGENLNLSCH--AASNPPAQYSWFVNGTF 243
Query: 246 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPK 305
+++ L I + ++G YTC+A N + +PPK
Sbjct: 244 QQSTQE-----------LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTT--ITVYAEPPK 290
Query: 306 FTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD 365
+ ++D D+ C W+ N + + R+++ +D +
Sbjct: 291 PFITSNNSNPVEDEDAVALTC---EPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLT-- 345
Query: 366 IAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQ 425
+ V +D G Y C N+ D + V L+
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVDHSDP---------VILN-------------------- 376
Query: 426 PVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL---------------- 469
V P T T + G +
Sbjct: 377 -------VLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELF 429
Query: 470 ------------VCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 517
C+ +N + V AE PK ++ +++ + F
Sbjct: 430 ISNITEKNSGLYTCQA-NNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFT 488
Query: 518 ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKY 577
+ W+ NG+ LP R + + L + ++ Y C N
Sbjct: 489 CE---PEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSV 543
Query: 578 GSDVTK---------------------------ASLKCVSKTNLILESQLPEVEWFYNGK 610
++ + +L C S +N P+ W NG
Sbjct: 544 SANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASN-----PSPQYSWRINGI 598
Query: 611 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
H L I N+G Y C +N
Sbjct: 599 PQQHTQV-----------LFIAKITPNNNGTYACFVSNLATGRNNSIVK 636
Score = 170 bits (432), Expect = 8e-45
Identities = 90/628 (14%), Positives = 165/628 (26%), Gaps = 158/628 (25%)
Query: 234 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
V P A ++ L I DTG YT E +
Sbjct: 46 IGYVIGTQQATPGPAYSGREIIYPNA--SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQ 103
Query: 294 ECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV 353
V + PK + + + ++D D+ F C + W+ N + + R+
Sbjct: 104 FRV---YPELPKPSISSNNSKPVEDKDAVAFTCE---PETQDATYLWWVNNQSLPVSPRL 157
Query: 354 KMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLA 413
++ + + + V +D+ Y C N + + V L+
Sbjct: 158 QLSNGNRTLT--LFNVTRNDTASYKCETQNPVSARRSDS---------VILN-------- 198
Query: 414 RIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE--ARLTPV------- 464
V P T T + G++ + A P
Sbjct: 199 -------------------VLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV 239
Query: 465 ------TDPDLVCELFSNFFPS------------QGQQPVAQAAPV---AEAPKFITQIS 503
+ +L N + + AE PK +
Sbjct: 240 NGTFQQSTQELF---IPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSN 296
Query: 504 DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYE 563
+ +++ + + W+ N + LP R + +D L +L
Sbjct: 297 NSNPVEDEDAVALTC---EPEIQNTTYLWWVNNQSLPVSPRLQLSNDNR--TLTLLSVTR 351
Query: 564 ENSGVYECRATNKYGSDVTKA---------------------------SLKCVSKTNLIL 596
+ G YEC N+ D + SL C + +N
Sbjct: 352 NDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASN--- 408
Query: 597 ESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+ W +G H + I +I E+NSG+Y C+A N
Sbjct: 409 --PPAQYSWLIDGNIQQHTQE--------LFISNIT---EKNSGLYTCQANNSASGHSRT 455
Query: 657 ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASL 716
+ S P+ + + + + + F
Sbjct: 456 TVKT----------------------ITVSA--ELPKPSISSNNSKPVEDKDAVAFTCE- 490
Query: 717 IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
Q T + NG+ + S R++ + L + D Y C N
Sbjct: 491 --PEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSAN 546
Query: 777 E-ISVNLECVVWSPSQTKLVYSLFEVPQ 803
V L+ V++ P +
Sbjct: 547 RSDPVTLD-VLYGPDTPIISPPDSSYLS 573
Score = 125 bits (316), Expect = 4e-30
Identities = 73/523 (13%), Positives = 120/523 (22%), Gaps = 135/523 (25%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAY---------- 368
G P W+ + ++ + V AY
Sbjct: 14 GKEVLLLVHNLP--QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71
Query: 369 ------VQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
+ +D+G Y + AT + + P+ + +
Sbjct: 72 SLLIQNIIQNDTGFYTLHVIKSDLVN-EEATGQ------FRVYPELPKPSISSNNSKPVE 124
Query: 423 GQQPV-----AQAAPVAEAPKFITQISDVTQLKEGQSAHFEAR-----------LTPVTD 466
+ V + QS R L VT
Sbjct: 125 DKDAVAFTCEPETQDA-----------TYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTR 173
Query: 467 PDL---VCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPV 523
D CE N ++ V V P T T + G++ +
Sbjct: 174 NDTASYKCET-QNPVSARRSDSVILN--VLYGPDAPTISPLNTSYRSGENLNLSCHAAS- 229
Query: 524 TDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 583
+P WF NG L I NSG Y C+A N
Sbjct: 230 -NPPAQYSWFVNGTFQQSTQE-----------LFIPNITVNNSGSYTCQAHNSDTGLNRT 277
Query: 584 ASLK-------------------CVSKTNLILE----SQLPEVEWFYNGKKLPHGHRYRT 620
+ + L Q W+ N + LP R +
Sbjct: 278 TVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQL 337
Query: 621 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQP 680
+D L +L + G YEC N+ D + + V
Sbjct: 338 SNDNRT--LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY---------------- 379
Query: 681 AGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR 740
P T + G + +L +G + +
Sbjct: 380 ---------GPDDPTISPSYT-YYRPGVNLSLSCH--AASNPPAQYSWLIDGNIQQHTQE 427
Query: 741 IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L I +++G+YTC+A N +
Sbjct: 428 -----------LFISNITEKNSGLYTCQANNSASGHSRTTVKT 459
Score = 125 bits (315), Expect = 5e-30
Identities = 56/394 (14%), Positives = 100/394 (25%), Gaps = 102/394 (25%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
FI E + L + E N W N + L + R + + D
Sbjct: 289 PKPFITSNNSNPVEDE-DAVALTCEPE---IQNTTYLWWVNNQSLPVSPRLQLSNDNR-- 342
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLE 184
TL L V D G Y C N + I
Sbjct: 343 TLTLLSVTRNDVGPYECGIQNELSVDHSDPVIL--------------------------- 375
Query: 185 ESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK 244
+ P T + G + +L +G
Sbjct: 376 ------------NVLYGPDDPTISPSYT-YYRPGVNLSLSCH--AASNPPAQYSWLIDGN 420
Query: 245 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
+ + L I +++G+YTC+A N + + + P
Sbjct: 421 IQQHTQE-----------LFISNITEKNSGLYTCQANNSASGHSRTTVKT-I-TVSAELP 467
Query: 305 KFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM 364
K + + + ++D D+ F C W+ NG+ + R+++ + +
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCE---PEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TL 522
Query: 365 DIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQ 424
+ V +D+ YVC N + + V LD
Sbjct: 523 TLFNVTRNDARAYVCGIQNSVSANRSD---------PVTLD------------------- 554
Query: 425 QPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 458
V P + G + +
Sbjct: 555 --------VLYGPDTPIISPPDSSYLSGANLNLS 580
Score = 117 bits (295), Expect = 1e-27
Identities = 51/357 (14%), Positives = 93/357 (26%), Gaps = 85/357 (23%)
Query: 49 AGKYQ---RQPSGPEET-------FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNL 98
G Y+ + + + P L L +P
Sbjct: 354 VGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAAS--NPPA 411
Query: 99 KIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYC 158
+ W+ +G + L ++ + +++ G+YTC+A N A +T
Sbjct: 412 QYSWLIDGNIQQHTQ-----------ELFISNITEKNSGLYTCQANNSASGHSRTTVK-- 458
Query: 159 STKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 218
I E P+ + + + +
Sbjct: 459 --------------------TITVSAE----------------LPKPSISSNNSKPVEDK 482
Query: 219 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 278
+ F Q T + NG+ + S R++ + L + D Y C
Sbjct: 483 DAVAFTCE---PEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVC 537
Query: 279 RATNKWGQAE-ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELK 337
N V L+ V P L G + + C ++P +
Sbjct: 538 GIQNSVSANRSDPVTLD-V---LYGPDTPIISPPDSSYLS-GANLNLSCHSA--SNPSPQ 590
Query: 338 VEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
W NG P H + IA + +++G Y C N
Sbjct: 591 YSWRINGIPQQHTQVLF-----------IAKITPNNNGTYACFVSNLATGRNNSIVK 636
Score = 88.1 bits (218), Expect = 3e-18
Identities = 42/349 (12%), Positives = 79/349 (22%), Gaps = 95/349 (27%)
Query: 499 ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI--- 555
+T S + EG+ P W+ + +
Sbjct: 2 LTIESTPFNVAEGKEVLLLVHNLP--QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGP 59
Query: 556 -------------LDILYCYEENSGVYECRATNKYGSDVT-------------------- 582
L I + ++G Y +
Sbjct: 60 AYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNN 119
Query: 583 --------KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 634
+ C E+Q W+ N + LP R + + L +
Sbjct: 120 SKPVEDKDAVAFTCEP------ETQDATYLWWVNNQSLPVSPRLQLSNGNR--TLTLFNV 171
Query: 635 YEENSGVYECRATNKYGSDVTK-ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQ 693
++ Y+C N + + L V P
Sbjct: 172 TRNDTASYKCETQNPVSARRSDSVILN----------------------VLYG----PDA 205
Query: 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLE 753
T + S GE + + + NG +++ L
Sbjct: 206 PTISPLNTS-YRSGENLNLSCH--AASNPPAQYSWFVNGTFQQSTQE-----------LF 251
Query: 754 ILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEVP 802
I + ++G YTC+A N + V++ + S P
Sbjct: 252 IPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNP 300
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 165 bits (420), Expect = 7e-46
Identities = 46/347 (13%), Positives = 100/347 (28%), Gaps = 55/347 (15%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
F + L+ E P + W + E R + +
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK---MTPKSEFSWSKDYVSTEDSPRLEVESKGNK 57
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+ ++ D GIY+C + G +S I + L+ + K
Sbjct: 58 TKMTFKDLGMDDLGIYSCDVTDTDGIA-SSYLIDEEELKRLLALSHEHK----------- 105
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
P + L +G++ + V +++N
Sbjct: 106 -----------------FPTVPVKSELAVEILEKGQVRFWMQ--AEKLSGNAKVNYIFNE 146
Query: 244 KPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL-------- 293
K I +++ G++ + + + ED G YT + + +V L
Sbjct: 147 KEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKL 206
Query: 294 ------ECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI 347
+ + + Q P F ++ + + +C + E + W+ + + I
Sbjct: 207 QKEAEFQRQEWIRKQGPHFVEYLSWE--VTGECNVLLKCKVA-NIKKETHIVWYKDEREI 263
Query: 348 FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + I D+G Y + G+D +R +
Sbjct: 264 SVDEKHDFKDGIC--TLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
Score = 158 bits (401), Expect = 2e-43
Identities = 40/326 (12%), Positives = 91/326 (27%), Gaps = 54/326 (16%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
P + +V S +FE P W + R
Sbjct: 1 GIDPFTKEVVVNVDD-DGVISLNFECD---KMTPKSEFSWSKDYVSTEDSPRLEVESKGN 56
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL------------ 600
+ ++ G+Y C T+ G + + K L L +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116
Query: 601 ---------------------PEVEWFYNGKKLPHGHRYRTFHDF--GIVILDILYCYEE 637
+V + +N K++ G +Y+ D GI+ + + +E
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 176
Query: 638 NSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE 697
+ G Y + + ++ + L+ + + + + P F
Sbjct: 177 DEGTYTFQLQDGKATNHSTV--------VLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY 228
Query: 698 FQHLSNLSEGEIAHFEASLIPVGDQTMT-VEFLYNGKPIEASHRIRTVHAFGMVVLEILG 756
++ + + + T + + + + I + G+ L I
Sbjct: 229 LS--WEVTGECNVLLKCKV--ANIKKETHIVWYKDEREISVDEKHDFKD--GICTLLITE 282
Query: 757 TKIEDTGVYTCRATNKWGQAEISVNL 782
+D G+Y + G+ + + L
Sbjct: 283 FSKKDAGIYEVILKDDRGKDKSRLKL 308
Score = 127 bits (319), Expect = 2e-32
Identities = 41/272 (15%), Positives = 81/272 (29%), Gaps = 35/272 (12%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
G P ++ +FE + + E S R+
Sbjct: 1 GIDPFTKEVVVNVD-DDGVISLNFEC---DKMTPKSEFSWSKDYVSTEDSPRLEVESKGN 56
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK-------SKGQPPKFTSHIKS 312
+ ++D G+Y+C T+ G A + E K P +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116
Query: 313 LEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF--GFVVMDIAYVQ 370
+E L+ G + KV + N K IF + KM D G + M + +Q
Sbjct: 117 VEILEKGQVRFWMQ--AEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQ 174
Query: 371 SHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQA 430
D G Y + + + + L + ++++ Q Q+ +
Sbjct: 175 DEDEGTYTFQLQDGKATNHSTVV-------------LVGDVFKKLQKEAEFQRQEWI--- 218
Query: 431 APVAEAPKFITQISDVTQLKEGQSAHFEARLT 462
+ P F+ +S + + ++
Sbjct: 219 --RKQGPHFVEYLSWEV--TGECNVLLKCKVA 246
Score = 122 bits (306), Expect = 1e-30
Identities = 44/317 (13%), Positives = 97/317 (30%), Gaps = 40/317 (12%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360
G P + +++ S +FEC P+ + W + R+++ S
Sbjct: 1 GIDPFTKEVVVNVD-DDGVISLNFEC---DKMTPKSEFSWSKDYVSTEDSPRLEVESKGN 56
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYL---DSLQPESLARIRE 417
M + D G Y C + G + + K + L +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116
Query: 418 LENAQGQQPV--AQAAPVAEAPKF--------ITQISDVTQLKEGQSAHFEARLTPVTDP 467
+E + Q QA ++ K I + + + E + + D
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 176
Query: 468 D----------------LVCELFSNFFPSQGQQPVAQAAPVA--EAPKFITQISDVTQLK 509
D L + F ++ Q + P F+ +S
Sbjct: 177 DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV--T 234
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 569
+ + ++ + + W+ + +++ ++ GI L I ++++G+Y
Sbjct: 235 GECNVLLKCKVA-NIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIY 291
Query: 570 ECRATNKYGSDVTKASL 586
E + G D ++ L
Sbjct: 292 EVILKDDRGKDKSRLKL 308
Score = 111 bits (278), Expect = 7e-27
Identities = 30/206 (14%), Positives = 61/206 (29%), Gaps = 19/206 (9%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
E W + R + ++ G+Y C T+ G + +
Sbjct: 32 SEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDE 91
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
K L L E P + L +G++ +
Sbjct: 92 EELKRLLALS---------------HEHKFPTVPVKSELAVEILEKGQVRFWMQ--AEKL 134
Query: 721 DQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
V +++N K I +++ G++ + + + ED G YT + +
Sbjct: 135 SGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHS 194
Query: 779 SVNLECVVWSPSQTKLVYSLFEVPQP 804
+V L V+ Q + + E +
Sbjct: 195 TVVLVGDVFKKLQKEAEFQRQEWIRK 220
Score = 106 bits (265), Expect = 3e-25
Identities = 33/243 (13%), Positives = 77/243 (31%), Gaps = 32/243 (13%)
Query: 54 RQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS 113
++ P V + ++ E + Q E K N K+ +IFN K + G
Sbjct: 95 KRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAE-KLSGNAKVNYIFNEKEIFEGP 153
Query: 114 RFKTTADF--GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHP 171
++K D G + + + ++ D D+G YT + + ++ +
Sbjct: 154 KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLV-------------- 199
Query: 172 KGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 231
++ + + + P F ++ + +
Sbjct: 200 --------GDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS--WEVTGECNVLLKCKV--AN 247
Query: 232 DQTMT-VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
+ T + + + + I + G+ L I +D G+Y + G+ +
Sbjct: 248 IKKETHIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSR 305
Query: 291 VNL 293
+ L
Sbjct: 306 LKL 308
Score = 96.2 bits (239), Expect = 6e-22
Identities = 29/210 (13%), Positives = 68/210 (32%), Gaps = 45/210 (21%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
+ V L++GQ + + V + +N K++ G +Y+ D
Sbjct: 103 EHKFPTVPVKSELAVEILEKGQVRFWMQ--AEKLSGNAKVNYIFNEKEIFEGPKYKMHID 160
Query: 551 F--GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL-------- 600
GI+ + + +E+ G Y + + ++ + L L E++
Sbjct: 161 RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK 220
Query: 601 -------------------------------PEVEWFYNGKKLPHGHRYRTFHDFGIVIL 629
+ W+ + +++ ++ GI L
Sbjct: 221 QGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTL 278
Query: 630 DILYCYEENSGVYECRATNKYGSDVTKASL 659
I ++++G+YE + G D ++ L
Sbjct: 279 LITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
Score = 67.3 bits (164), Expect = 3e-12
Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 29/155 (18%)
Query: 2 VKATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEE 61
+ + K + ++ L D++ + Q E +++
Sbjct: 183 FQLQDGKATNHSTVVLV----GDVFKKLQKEAEFQRQEWIRKQ----------------- 221
Query: 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
P F+ L E + L+ +V I W + + + + +
Sbjct: 222 ---GPHFVEYLSWEVTGEC--NVLLKCKVA-NIKKETHIVWYKDEREISVDEKHDFKDGI 275
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
TL +TE +D GIY + G+ + +
Sbjct: 276 C--TLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
Score = 65.0 bits (158), Expect = 2e-11
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 4/98 (4%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
G P ++ +FE + + E S R+
Sbjct: 1 GIDPFTKEVVVNVD-DDGVISLNFEC---DKMTPKSEFSWSKDYVSTEDSPRLEVESKGN 56
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786
+ ++D G+Y+C T+ G A + E +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEEL 94
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 142 bits (361), Expect = 3e-39
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 10/196 (5%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAF 258
+ P FT Q + + EG A FEA + G V + +G+ I S ++ +
Sbjct: 4 QAPTFTQPLQSVV-VLEGSTATFEAHI--SGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
G L I ++G Y+ +ATN GQA + L ++ PP F ++S+ ++
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA--PPNFVQRLQSMT-VRQ 117
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G + +T P V+++ +G I ++ + + IA DSG Y
Sbjct: 118 GSQVRLQVRVT--GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYS 175
Query: 379 CRAWNKYGEDFTRATI 394
A N G + A +
Sbjct: 176 VNATNSVGRATSTAEL 191
Score = 116 bits (293), Expect = 4e-30
Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 30/194 (15%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHG--HRYRTF 548
+AP F + V + EG +A FEA ++ P V WF +G+ + +
Sbjct: 2 TTQAPTFTQPLQSVV-VLEGSTATFEAH---ISGFPVPEVSWFRDGQVISTSTLPGVQIS 57
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT---------------- 592
G L I + NSG Y +ATN G + A L ++T
Sbjct: 58 FSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQ 117
Query: 593 --NLILE-----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 645
+ L+ P V+++ +G ++ ++ + + L I Y E+SG Y
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 646 ATNKYGSDVTKASL 659
ATN G + A L
Sbjct: 178 ATNSVGRATSTAEL 191
Score = 113 bits (284), Expect = 8e-29
Identities = 43/185 (23%), Positives = 66/185 (35%), Gaps = 29/185 (15%)
Query: 601 PEVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
PEV WF +G+ + + G L I + NSG Y +ATN G + A
Sbjct: 35 PEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAE 94
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 718
L + PP F Q ++ + +G +
Sbjct: 95 LLVK------------------------AETAPPNFVQRLQSMT-VRQGSQVRLQVR--V 127
Query: 719 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
G T V+F +G I++S + + L I ED+G Y+ ATN G+A
Sbjct: 128 TGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS 187
Query: 779 SVNLE 783
+ L
Sbjct: 188 TAELL 192
Score = 112 bits (282), Expect = 1e-28
Identities = 42/231 (18%), Positives = 79/231 (34%), Gaps = 46/231 (19%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR--FKTTADFGF 123
P F PL+ + E EA + P ++ W +G+ + + + + G
Sbjct: 6 PTFTQPLQSV-VVLEGSTATFEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
L + V + G Y+ +A N +G+ ++ + + +
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA-------------------- 102
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
PP F Q ++ + +G + G T V+F +G
Sbjct: 103 ------------------PPNFVQRLQSMT-VRQGSQVRLQVR--VTGIPTPVVKFYRDG 141
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
I++S + + L I ED+G Y+ ATN G+A + L
Sbjct: 142 AEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192
Score = 80.2 bits (198), Expect = 2e-17
Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 40/163 (24%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH--KNRVKMVSDF 359
Q P FT ++S+ + +G +A FE ++ P +V WF +G+ I V++
Sbjct: 4 QAPTFTQPLQSVV-VLEGSTATFEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELE 419
G + I V +SG Y +A N G+ + A + ++ E+
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELL-----------VKAET-------- 101
Query: 420 NAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLT 462
P F+ ++ +T +++G + R+T
Sbjct: 102 ---------------APPNFVQRLQSMT-VRQGSQVRLQVRVT 128
Score = 77.1 bits (190), Expect = 3e-16
Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 46/195 (23%)
Query: 433 VAEAPKFITQISDVTQLKEGQSAHFEARLT--P----------------------VTDPD 468
+AP F + V + EG +A FEA ++ P ++ D
Sbjct: 2 TTQAPTFTQPLQSVV-VLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 469 LVCELF-SNFFPS-QGQ----------QPVAQAA----PVAEAPKFITQISDVTQLKEGQ 512
+L + G+ Q + A P F+ ++ +T +++G
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMT-VRQGS 119
Query: 513 SAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 571
+ R VT P VV+++ +G ++ ++ + + L I Y E+SG Y
Sbjct: 120 QVRLQVR---VTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 572 RATNKYGSDVTKASL 586
ATN G + A L
Sbjct: 177 NATNSVGRATSTAEL 191
Score = 69.4 bits (170), Expect = 1e-13
Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
+ A P F+ L+ + + + L+ +V P +++ +G ++ F+ +
Sbjct: 98 KAETAPPNFVQRLQSM-TVRQGSQVRLQVRVT--GIPTPVVKFYRDGAEIQSSLDFQISQ 154
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ +L + E Y D G Y+ A N G ++ +
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 145 bits (366), Expect = 8e-38
Identities = 71/493 (14%), Positives = 114/493 (23%), Gaps = 137/493 (27%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 258
+ P + + E E Q + + +GK +
Sbjct: 5 KYPVLKDQPAEVL-FRENNPTVLECIIEGND---QGVKYSWKKDGKSYNWQEHNAALR-K 59
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
L L + D G Y C A G A V + K + ++
Sbjct: 60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRV----ISFRKTYLIASPAKTHEKTPIE- 114
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN-------RVKMVSDFGFVVMDIAYVQS 371
G +C L P P+ + W R+ D +
Sbjct: 115 GRPFQLDCVL-PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDV 173
Query: 372 HDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAA 431
D +YVC A N ++ + V +
Sbjct: 174 SDIYKYVCTAKNAAVDEEVVLVEY---------------------------EIKGVTKDN 206
Query: 432 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAP 491
+ +S K G C + + P
Sbjct: 207 SGYKGEPVPQYVSKDMMAKAGDVTMIY------------C--------------MYGSNP 240
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--FH 549
+ +F NGK + R +
Sbjct: 241 MGY-----------------------------------PNYFKNGKDVNGNPEDRITRHN 265
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV-----------SKTNLILES 598
L E+ GVY C N G + V +
Sbjct: 266 RTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQ 325
Query: 599 QL-----------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
+ P V W +N K L G T D G+VI + + G Y CRAT
Sbjct: 326 DVTIPCKVTGLPAPNVVWSHNAKPLSGGR--ATVTDSGLVIKGV---KNGDKGYYGCRAT 380
Query: 648 NKYGSDVTKASLK 660
N++G + ++
Sbjct: 381 NEHGDKYFETLVQ 393
Score = 140 bits (354), Expect = 3e-36
Identities = 73/518 (14%), Positives = 125/518 (24%), Gaps = 165/518 (31%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-FHKNRVKMVSDFG 360
+ P + ++ + EC + ND +K W +GK + ++ + D G
Sbjct: 5 KYPVLKDQPAEVL-FRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELEN 420
+V Q+ D G Y C A G +R R
Sbjct: 63 SLV--FLRPQASDEGHYQCFAETPAGVASSRV--------------------ISFR---- 96
Query: 421 AQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPS 480
+ + T EG+ + C
Sbjct: 97 ------------KTYLIASPAKTHEKT-PIEGRPFQLD------------C--------- 122
Query: 481 QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP 540
+ A P +T K A N
Sbjct: 123 ----VLPNAYPKPL----------ITWKKRLSGA------------------DPNADVTD 150
Query: 541 HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTN------- 593
R D + + + Y C A N + +
Sbjct: 151 FDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYK 210
Query: 594 -------------------LILE-----SQLPEVEWFYNGKKLPHGHRYRT--FHDFGIV 627
++ + + +F NGK + R +
Sbjct: 211 GEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 270
Query: 628 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSE 687
L E+ GVY C N G + L + S
Sbjct: 271 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHS-------LKLTVVS---------------- 307
Query: 688 DGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
P++ + + + + +G+ + + G V + +N KP+ T
Sbjct: 308 ---APKYEQKPEKVIVVKQGQDVTIPCKVT----GLPAPNVVWSHNAKPLSGGRATVTDS 360
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L I G K D G Y CRATN+ G ++
Sbjct: 361 -----GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
Score = 136 bits (344), Expect = 7e-35
Identities = 59/343 (17%), Positives = 100/343 (29%), Gaps = 63/343 (18%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL-------ELGSRFKTT 118
+ + E +P L+ + P P I W + R
Sbjct: 101 IASPAKTHEKTPI-EGRPFQLDCVL-PNAYPKPLITWKKRLSGADPNADVTDFDRRITAG 158
Query: 119 ADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
D +T+ D Y C A N A +
Sbjct: 159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLV----------------------- 195
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 238
+ +S P + + G++ + +
Sbjct: 196 -------EYEIKGVTKDNSGYKGEPVPQYVSKDMM-AKAGDVTMIYC--MYGSNPMGYPN 245
Query: 239 FLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE---ISVNL 293
+ NGK + + RI + L T ED GVYTC N G+ + + + +
Sbjct: 246 YFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 305
Query: 294 ECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNR 352
PK+ + + +K G C V P V W HN KP+ R
Sbjct: 306 V-------SAPKYEQKPEKVIVVKQGQDVTIPC---KVTGLPAPNVVWSHNAKPL-SGGR 354
Query: 353 VKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + I V++ D G Y CRA N++G+ + ++
Sbjct: 355 ATVTDS----GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
Score = 135 bits (341), Expect = 2e-34
Identities = 80/540 (14%), Positives = 131/540 (24%), Gaps = 167/540 (30%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-TTADF 121
PV F+ P LE +E + +K W +GK D
Sbjct: 5 KYPVLKDQPAEVLFRENN--PTVLECIIEGNDQG-VKYSWKKDGKSYNWQEHNAALRKDE 61
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
G +L D+G Y C A AG +
Sbjct: 62 G--SLVFLRPQASDEGHYQCFAETPAGVASSRVI-------------------------- 93
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
S R+ ++ + EG + +P + +
Sbjct: 94 ----SFRK----------TYLIASPAKTHEKT-PIEGRPFQLDCV-LPNAYPKPLITWKK 137
Query: 242 NGKPI-------EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-----AEI 289
+ RI + + + D Y C A N E
Sbjct: 138 RLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEY 197
Query: 290 SVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-- 347
+ D S + ++ K GD C ++P +F NGK +
Sbjct: 198 EIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYG--SNPMGYPNYFKNGKDVNG 255
Query: 348 FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSL 407
++R+ + + D G Y C N G+ +
Sbjct: 256 NPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS--------------- 300
Query: 408 QPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDP 467
++ V APK+ + V +K+GQ
Sbjct: 301 -----LKLT----------------VVSAPKYEQKPEKVIVVKQGQDVTIP--------- 330
Query: 468 DLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD 527
C+ P AP V +
Sbjct: 331 ---CK--------------VTGLP---APN-------VVWSHNAKP-------------- 349
Query: 528 LVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L G T D G+VI + + G Y CRATN++G + ++
Sbjct: 350 -----------LSGGR--ATVTDSGLVIKGV---KNGDKGYYGCRATNEHGDKYFETLVQ 393
Score = 123 bits (311), Expect = 1e-30
Identities = 49/318 (15%), Positives = 82/318 (25%), Gaps = 53/318 (16%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
PV + P Q ++V +E E + D + W +GK
Sbjct: 2 PVDKYPVLKDQPAEVL-FRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEHNAALRK 59
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTK-ASLKCVSKTNLILESQ---------- 599
L L + G Y+C A G ++ S + ++
Sbjct: 60 DEGS-LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPF 118
Query: 600 -----------LPEVEWFYNGKKLPH-------GHRYRTFHDFGIVILDILYCYEENSGV 641
P + W R D + + +
Sbjct: 119 QLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK 178
Query: 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHL 701
Y C A N + E L E + +S P + +
Sbjct: 179 YVCTAKNAAVDE----------------EVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDM 222
Query: 702 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKI 759
G++ + + + NGK + + RI + L T
Sbjct: 223 M-AKAGDVTMIYC--MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLP 279
Query: 760 EDTGVYTCRATNKWGQAE 777
ED GVYTC N G+ +
Sbjct: 280 EDEGVYTCEVDNGVGKPQ 297
Score = 88.0 bits (218), Expect = 1e-18
Identities = 43/264 (16%), Positives = 75/264 (28%), Gaps = 60/264 (22%)
Query: 35 AAGLEKVQEVEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKN 94
AA E+V VE+ + + +PV K + +
Sbjct: 186 AAVDEEVVLVEYEI----KGVTKDNSGYKGEPVPQYVSKDM-MAKAGDVTMIYCMYG--S 238
Query: 95 DPNLKIEWIFNGKPLELGS--RFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152
+P + NGK + R L D+G+YTC N G+
Sbjct: 239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP-Q 297
Query: 153 STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHL 212
++ + P++ + + +
Sbjct: 298 KHSLKLTVVS---------------------------------------APKYEQKPEKV 318
Query: 213 SNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKI 270
+ +G+ + + G V + +N KP+ T L I G K
Sbjct: 319 IVVKQGQDVTIPCKVT----GLPAPNVVWSHNAKPLSGGRATVTDS-----GLVIKGVKN 369
Query: 271 EDTGVYTCRATNKWGQAEISVNLE 294
D G Y CRATN+ G ++
Sbjct: 370 GDKGYYGCRATNEHGDKYFETLVQ 393
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 139 bits (351), Expect = 1e-37
Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 21/201 (10%)
Query: 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 271
L S E S + + + V + +NG I S R++T + L+I
Sbjct: 11 LKIQSTAEGIQLY-SFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPN 69
Query: 272 DTGVYTCRATNKWGQAEISVNL----------------ECVDKSKGQPPKFTSHIKSLEG 315
D G Y + + +V+L + K + +
Sbjct: 70 DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVT- 128
Query: 316 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF-GFVVMDIAYVQSHDS 374
+++G + + C + DP +V W N K + + + + I V + DS
Sbjct: 129 IQEGKALNLTCNVW--GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADS 186
Query: 375 GEYVCRAWNKYGEDFTRATIK 395
G+Y NKYG + + T+
Sbjct: 187 GKYGLVVKNKYGSETSDFTVS 207
Score = 126 bits (319), Expect = 2e-33
Identities = 32/184 (17%), Positives = 56/184 (30%), Gaps = 10/184 (5%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
+V W +NG + + R +T + L I + G Y + L
Sbjct: 33 LKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 92
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
+ E Q + +E R ++ + EG+ + ++ G
Sbjct: 93 GQAYDEAYAEFQRLK------QAAIAEKNRARVLGGLPDVVT-IQEGKALNLTCNV--WG 143
Query: 721 DQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
D V +L N K + + A I G D+G Y NK+G
Sbjct: 144 DPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSD 203
Query: 780 VNLE 783
+
Sbjct: 204 FTVS 207
Score = 126 bits (317), Expect = 3e-33
Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 32/224 (14%)
Query: 80 EAQPLHLEAQVE--------PKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEV 131
A L +++ E +LK+ W NG + R KT + L + E
Sbjct: 7 SATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP 66
Query: 132 YDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQP 191
D+G Y ++ + + + Q K EK
Sbjct: 67 TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK------------ 114
Query: 192 AGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR 251
R ++ + EG+ + ++ GD V +L N K + +
Sbjct: 115 --------NRARVLGGLPDVVT-IQEGKALNLTCNV--WGDPPPEVSWLKNEKALAQTDH 163
Query: 252 IR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
A I G D+G Y NK+G +
Sbjct: 164 CNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
Score = 111 bits (278), Expect = 6e-28
Identities = 34/200 (17%), Positives = 52/200 (26%), Gaps = 43/200 (21%)
Query: 503 SDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY 562
+D+ + + +T DL V W +NG + + R +T + L I
Sbjct: 9 TDLKIQSTAEGIQLYSFVT-YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPT 67
Query: 563 EENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL---------------------- 600
+ G Y + L + E Q
Sbjct: 68 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 127
Query: 601 -------------------PEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSG 640
PEV W N K L F I +SG
Sbjct: 128 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSG 187
Query: 641 VYECRATNKYGSDVTKASLK 660
Y NKYGS+ + ++
Sbjct: 188 KYGLVVKNKYGSETSDFTVS 207
Score = 84.5 bits (209), Expect = 1e-18
Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 18/144 (12%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
+ +T +LKV W HNG I + +RVK + + I +D G+YV
Sbjct: 17 AEGIQLYSFVT-YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75
Query: 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPK 438
++ + S Q A A+ Q+ A +
Sbjct: 76 MELFDGKTGHQKTVDL-----------SGQAYDEAY------AEFQRLKQAAIAEKNRAR 118
Query: 439 FITQISDVTQLKEGQSAHFEARLT 462
+ + DV ++EG++ + +
Sbjct: 119 VLGGLPDVVTIQEGKALNLTCNVW 142
Score = 80.7 bits (199), Expect = 2e-17
Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 26/156 (16%)
Query: 2 VKATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEE 61
++ + K + L + Y E Q AA EK
Sbjct: 76 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKN-------------------- 115
Query: 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
+ + L + E + L+L V DP ++ W+ N K L +
Sbjct: 116 ---RARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKALAQTDHCNLKFEA 170
Query: 122 -GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ V D G Y N G + T+
Sbjct: 171 GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 206
Score = 79.5 bits (196), Expect = 6e-17
Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
Query: 479 PSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGK 537
++ Q+ A + + + DV ++EG++ + V DP V W N K
Sbjct: 100 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCN---VWGDPPPEVSWLKNEK 156
Query: 538 KLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L F I +SG Y NKYGS+ + ++
Sbjct: 157 ALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
Score = 71.1 bits (174), Expect = 4e-14
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 701 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 760
L S E S + + + V + +NG I S R++T + L+I
Sbjct: 11 LKIQSTAEGIQLY-SFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPN 69
Query: 761 DTGVYTCRATNKWGQAEISVNL 782
D G Y + + +V+L
Sbjct: 70 DKGKYVMELFDGKTGHQKTVDL 91
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 143 bits (363), Expect = 3e-37
Identities = 67/335 (20%), Positives = 102/335 (30%), Gaps = 63/335 (18%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL---GSRFKTTAD 120
F+ + + L+ +V DP I W N + L SR
Sbjct: 120 GPLRFLSQTESI-TAFMGDTVLLKCEVIG--DPMPTIHWQKNQQDLNPIPGDSRVVVLPS 176
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKI 180
G L ++ + D G+Y C A N A T
Sbjct: 177 -G--ALQISRLQPGDSGVYRCSARNPASTR-TGNEAEVRILS------------------ 214
Query: 181 QDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVE 238
D R F ++ EG+ A E S G +
Sbjct: 215 ---------------DPGLHRQLYFLQRPSNVI-AIEGKDAVLECCVS----GYPPPSFT 254
Query: 239 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
+L + I+ + ++ L I +D+G YTC T K S L +
Sbjct: 255 WLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV- 311
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
PP F +H +L + FEC ++ P V W NG + + ++V
Sbjct: 312 ----PPWFLNHPSNLYAYE-SMDIEFECAVS--GKPVPTVNWMKNGDVVIPSDYFQIVGG 364
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
+ I V D G Y C A N+ G + A
Sbjct: 365 -SNLR--ILGVVKSDEGFYQCVAENEAGNAQSSAQ 396
Score = 142 bits (359), Expect = 9e-37
Identities = 79/536 (14%), Positives = 140/536 (26%), Gaps = 170/536 (31%)
Query: 279 RATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKV 338
R ++ + + + F S ++ G + C+ + +
Sbjct: 2 RWGSELESSHHHHHH-----GGRRSLHFVSEPSDAVTMR-GGNVLLNCSAES-DRGVPVI 54
Query: 339 EWFHNGKPIFHK--NRVKMVSDFGFVV--MDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+W +G + +R + + + ++ + + D G Y C A T
Sbjct: 55 KWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRT- 113
Query: 395 KCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQS 454
A++ VA +F++Q +T G +
Sbjct: 114 ------------------AKVM----------------VAGPLRFLSQTESIT-AFMGDT 138
Query: 455 AHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSA 514
+ CE P+ + K Q
Sbjct: 139 VLLK------------CE--------------VIGDPMPT----------IHWQKNQQD- 161
Query: 515 HFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 574
L P+ R + I + +SGVY C A
Sbjct: 162 -----LNPIPG----------------DSRVVVLPSGALQISRLQ---PGDSGVYRCSAR 197
Query: 575 NKYGSDVTKA----------------------SLKCVSKTNLILE-----SQLPEVEWFY 607
N + ++ + + +LE P W
Sbjct: 198 NPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR 257
Query: 608 NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL 667
+ + + + L I +++SG Y C T K + A L
Sbjct: 258 GEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELT------- 308
Query: 668 ILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 727
+L PP F + +L E FE + G TV
Sbjct: 309 VLV--------------------PPWFLNHPSNLY-AYESMDIEFECA--VSGKPVPTVN 345
Query: 728 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
++ NG + S + + L ILG D G Y C A N+ G A+ S L
Sbjct: 346 WMKNGDVVIPSDYFQ-IVGGSN--LRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
Score = 141 bits (358), Expect = 1e-36
Identities = 78/535 (14%), Positives = 137/535 (25%), Gaps = 165/535 (30%)
Query: 63 FAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
F+ G + L E + I+W +G L LG +
Sbjct: 19 RRSLHFVSEPSDAVTMRGG--NVLLNCSAES-DRGVPVIKWKKDGLILALGMDDRKQQLP 75
Query: 122 G----FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGL 177
+ + + D+G+Y C A + S T
Sbjct: 76 NGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG--------------- 120
Query: 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
P +F S+ + ++ G+ + +GD T+
Sbjct: 121 ------------------------PLRFLSQTESIT-AFMGDTVLLKCE--VIGDPMPTI 153
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-----AEISVN 292
+ N + + V L+I + D+GVY C A N AE+ +
Sbjct: 154 HWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213
Query: 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNR 352
D + F ++ + +G A EC ++ P W + I +++
Sbjct: 214 ---SDPGLHRQLYFLQRPSNVIAI-EGKDAVLECCVS--GYPPPSFTWLRGEEVIQLRSK 267
Query: 353 VKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESL 412
+ + I+ V DSG Y C K A +
Sbjct: 268 KYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELT----------------- 308
Query: 413 ARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCE 472
V P F+ S++ E FE C
Sbjct: 309 --------------------VLVPPWFLNHPSNLY-AYESMDIEFE------------CA 335
Query: 473 LFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW 532
PV V +K G
Sbjct: 336 --------------VSGKPVPT----------VNWMKNGD-------------------- 351
Query: 533 FYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ ++ + IL + + + G Y+C A N+ G+ + A L
Sbjct: 352 -----VVIPSDYFQIVGGSNLRILGV---VKSDEGFYQCVAENEAGNAQSSAQLI 398
Score = 136 bits (345), Expect = 6e-35
Identities = 76/489 (15%), Positives = 133/489 (27%), Gaps = 139/489 (28%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHRIRTVHAFG 259
R F SE G D+ +++ +G + R
Sbjct: 20 RSLHFVSEPSDAV-TMRGGNVLLNC--SAESDRGVPVIKWKKDGLILALGMDDRKQQLPN 76
Query: 260 ----MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEG 315
+ + D G+Y C A+ + IS + + P +F S +S+
Sbjct: 77 GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG---PLRFLSQTESIT- 132
Query: 316 LKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFH---KNRVKMVSDFGFVVMDIAYVQS 371
GD+ +C V DP + W N + + +RV ++ I+ +Q
Sbjct: 133 AFMGDTVLLKC---EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ---ISRLQP 186
Query: 372 HDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAA 431
DSG Y C A N A +R +
Sbjct: 187 GDSGVYRCSARNPASTRTGNE--------------------AEVR----------ILSDP 216
Query: 432 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAP 491
+ F+ + S+V + EG+ A E C P
Sbjct: 217 GLHRQLYFLQRPSNVIAI-EGKDAVLE------------C--------------CVSGYP 249
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
T L+ + + + +
Sbjct: 250 PPS----------FTWLRGEEV-------------------------IQLRSKKYSLLGG 274
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ------------ 599
L I +++SG Y C T K + A L + +
Sbjct: 275 S--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEF 332
Query: 600 --------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
+P V W NG + ++ + IL + + + G Y+C A N+ G
Sbjct: 333 ECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGV---VKSDEGFYQCVAENEAG 389
Query: 652 SDVTKASLK 660
+ + A L
Sbjct: 390 NAQSSAQLI 398
Score = 121 bits (306), Expect = 7e-30
Identities = 55/329 (16%), Positives = 99/329 (30%), Gaps = 65/329 (19%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
+ F+++ SD G + V++W +G L G R
Sbjct: 18 GRRSLHFVSEPSDAV-TMRGGNVLLNCSAES-DRGVPVIKWKKDGLILALGMDDRKQQLP 75
Query: 552 G----IVILDILYCYEENSGVYECRATNKYGSDVT--KASLKCVSKTNLILESQ------ 599
I + ++ + G+Y+C A+ + A + + +++
Sbjct: 76 NGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFM 135
Query: 600 --------------LPEVEWFYNGKKL---PHGHRYRTFHDFGIVILDILYCYEENSGVY 642
+P + W N + L P R + I + +SGVY
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQ---PGDSGVY 192
Query: 643 ECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLS 702
C A N + ++ + + S D R F ++
Sbjct: 193 RCSARNPASTRTG-------NEAEVRILS-------------DPGLHRQLYFLQRPSNVI 232
Query: 703 NLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 760
EG+ A E S G + +L + I+ + ++ L I +
Sbjct: 233 -AIEGKDAVLECCVS----GYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDD 285
Query: 761 DTGVYTCRATNKWGQAEISVNLECVVWSP 789
D+G YTC T K S L V P
Sbjct: 286 DSGTYTCVVTYKNENISASAELT--VLVP 312
Score = 88.4 bits (219), Expect = 9e-19
Identities = 45/236 (19%), Positives = 68/236 (28%), Gaps = 52/236 (22%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
+ F+ E + LE V P W+ + ++L S+ +
Sbjct: 215 DPGLHRQLYFLQRPSNV-IAIEGKDAVLECCV--SGYPPPSFTWLRGEEVIQLRSKKYSL 271
Query: 119 ADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
L ++ V D D G YTC S +
Sbjct: 272 LGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELT--------------------- 308
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 238
+ PP F + +L E FE + G TV
Sbjct: 309 -VLV-------------------PPWFLNHPSNLY-AYESMDIEFECA--VSGKPVPTVN 345
Query: 239 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
++ NG + S + + L ILG D G Y C A N+ G A+ S L
Sbjct: 346 WMKNGDVVIPSDYFQ-IVGGSN--LRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
Score = 75.6 bits (186), Expect = 1e-14
Identities = 37/231 (16%), Positives = 75/231 (32%), Gaps = 40/231 (17%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFG----IVILDILY 633
G +V L C ++++ +P ++W +G L G R I +
Sbjct: 36 GGNVL---LNCSAESDR----GVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSR 88
Query: 634 CYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQ 693
++ + G+Y+C A+ + + K +++ P +
Sbjct: 89 HHKPDEGLYQCEASLGDSGSIISRTAK------VMVAG-------------------PLR 123
Query: 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLE 753
F S+ + ++ G+ + +GD T+ + N + + V L+
Sbjct: 124 FLSQTESIT-AFMGDTVLLKCE--VIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ 180
Query: 754 ILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEVPQP 804
I + D+GVY C A N E + S + P
Sbjct: 181 ISRLQPGDSGVYRCSARNPASTRT-GNEAEVRILSDPGLHRQLYFLQRPSN 230
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 140 bits (354), Expect = 2e-36
Identities = 84/488 (17%), Positives = 135/488 (27%), Gaps = 141/488 (28%)
Query: 202 PPQFTSEFQHLSNL--SEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 257
P F + H S E A + T + NG ++ R
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRAR----ANPPATYRWKMNGTELKMGPDSRYRLV 59
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQA---EISVNLECVDKSKGQPPKFTSHIKSLE 314
G +V+ K +D G Y C ATN G E S+ G +F++ +
Sbjct: 60 AGDLVI-SNPVKAKDAGSYQCVATNARGTVVSREASLRF-------GFLQEFSAEERDPV 111
Query: 315 GLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIF--HKNRVKMVSDFGFVVMDIAYVQSH 372
+ +G F C+ P + P L W N P F R + G + IA ++
Sbjct: 112 KITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEAS 168
Query: 373 DSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAP 432
D G Y C A + + Q +A
Sbjct: 169 DLGNYSCFATSHIDFITKSVF--------------------------SKFSQLSLAAEDA 202
Query: 433 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPV 492
AP + T GQ E C A PV
Sbjct: 203 RQYAPSIKAKFPADTYALTGQMVTLE------------C--------------FAFGNPV 236
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ ++W +
Sbjct: 237 PQ-----------------------------------IKWRKLDGSQT---SKWLSSEPL 258
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI--LESQL---------- 600
+ I ++ E+ G YEC A N G D + + ++ + + +
Sbjct: 259 LHIQNVD---FEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWS 315
Query: 601 --------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
P V W +G+ L +R + ++ E+SG+Y+C A NK+G+
Sbjct: 316 CVASGKPRPAVRWLRDGQPLASQNRIEVSGG-ELRFSKLV---LEDSGMYQCVAENKHGT 371
Query: 653 DVTKASLK 660
A L
Sbjct: 372 VYASAELT 379
Score = 125 bits (316), Expect = 2e-31
Identities = 60/335 (17%), Positives = 103/335 (30%), Gaps = 61/335 (18%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL---GSRFKTTADFG 122
F + K+ E + P + P L W+ N P + G RF + G
Sbjct: 101 QEFSAEERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTT-G 158
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
L + + D G Y+C A + S
Sbjct: 159 --NLYIAKTEASDLGNYSCFATSHIDFITKSVF--------------------------- 189
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFL 240
S Q + + P ++F + G++ E A G+ +++
Sbjct: 190 ---SKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF----GNPVPQIKWR 242
Query: 241 YNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSK 300
+ + + L I ED G Y C A N G+ +
Sbjct: 243 KLDGS-----QTSKWLSSEPL-LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA--- 293
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360
P + I E G + C + P V W +G+P+ +NR+++
Sbjct: 294 --QPDWLDVITDTE-ADIGSDLRWSCVAS--GKPRPAVRWLRDGQPLASQNRIEVSGG-- 346
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + + DSG Y C A NK+G + A +
Sbjct: 347 --ELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
Score = 119 bits (299), Expect = 4e-29
Identities = 89/531 (16%), Positives = 144/531 (27%), Gaps = 165/531 (31%)
Query: 66 PVFIVPLKP--EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
PVF + + + L + +P W NG L++G + G
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARA--NPPATYRWKMNGTELKMGPDSRYRLVAGD 62
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+ + V +D G Y C A N G S + SL
Sbjct: 63 LVI-SNPVKAKDAGSYQCVATNARGTVV-------SREASLRF----------------- 97
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
G +F++E + ++EG F S P ++ +L N
Sbjct: 98 ----------------GFLQEFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNE 140
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE------CVD 297
P R + L I T+ D G Y+C AT+ SV + +
Sbjct: 141 FPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 200
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMV 356
++ P + + G EC +P +++W K +
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLEC---FAFGNPVPQIKWRKLDGSQ----TSKWL 253
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIR 416
S ++ I V D G Y C A N G D + I
Sbjct: 254 SSEP--LLHIQNVDFEDEGTYECEAENIKGRDTYQGRII--------------------- 290
Query: 417 ELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSN 476
+ P ++ I+D G + C
Sbjct: 291 ----------------IHAQPDWLDVITDTE-ADIGSDLRWS------------CV---- 317
Query: 477 FFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG 536
A P P V L++GQ
Sbjct: 318 ----------ASGKPR---PA-------VRWLRDGQP----------------------- 334
Query: 537 KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L +R + ++ E+SG+Y+C A NK+G+ A L
Sbjct: 335 --LASQNRIEVSGG-ELRFSKLV---LEDSGMYQCVAENKHGTVYASAELT 379
Score = 117 bits (295), Expect = 1e-28
Identities = 57/329 (17%), Positives = 91/329 (27%), Gaps = 83/329 (25%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP---HGHRYRTF 548
+F + D ++ EG F P P L W N G R+ +
Sbjct: 97 FGFLQEFSAEERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQ 155
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT---------------- 592
+ I + G Y C AT+ K +
Sbjct: 156 TTGNLYIAKTE---ASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212
Query: 593 -----------NLILE-----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYE 636
+ LE + +P+++W + + I ++
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT---SKWLSSEPLLHIQNVD---F 266
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
E+ G YEC A N G D + + I P +
Sbjct: 267 EDEGTYECEAENIKGRDTYQGRII-------IHA--------------------QPDWLD 299
Query: 697 EFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEI 754
G + AS G V +L +G+P+ + +RI L
Sbjct: 300 VITDTE-ADIGSDLRWSCVAS----GKPRPAVRWLRDGQPLASQNRIEVSGG----ELRF 350
Query: 755 LGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ED+G+Y C A NK G S L
Sbjct: 351 SKLVLEDSGMYQCVAENKHGTVYASAELT 379
Score = 98.4 bits (245), Expect = 4e-22
Identities = 53/328 (16%), Positives = 95/328 (28%), Gaps = 66/328 (20%)
Query: 493 AEAPKFITQISDVTQLK--EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFH 549
+ P F Q + + + R +P W NG +L G R
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARA--NPPATYRWKMNGTELKMGPDSRYRLV 59
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQ--------- 599
+VI + + +++G Y+C ATN G+ V+ +ASL+ E +
Sbjct: 60 AGDLVISNPVK--AKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGW 117
Query: 600 -------------LPEVEWFYNGKKLP---HGHRYRTFHDFGIVILDILYCYEENSGVYE 643
W N G R+ + + I + G Y
Sbjct: 118 GVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTE---ASDLGNYS 174
Query: 644 CRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSN 703
C AT+ + L L + P ++F +
Sbjct: 175 CFATSHIDFITKSVF---SKFSQLSL-------------AAEDARQYAPSIKAKFPADTY 218
Query: 704 LSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIED 761
G++ E A G+ +++ + + +L I ED
Sbjct: 219 ALTGQMVTLECFAF----GNPVPQIKWRKLDGS-----QTSKWLSSEP-LLHIQNVDFED 268
Query: 762 TGVYTCRATNKWGQAEISVNLECVVWSP 789
G Y C A N G+ + ++ +
Sbjct: 269 EGTYECEAENIKGRDTYQGRI--IIHAQ 294
Score = 75.3 bits (185), Expect = 2e-14
Identities = 41/232 (17%), Positives = 60/232 (25%), Gaps = 60/232 (25%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
P + Q + LE +P +I+W
Sbjct: 206 APSIKAKFPADTYALTGQMVTLECFAF--GNPVPQIKWRKLDGSQTSKWLSSEP------ 257
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLE 184
L + V D+G Y C A N+ G I I
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRI----------------------IIHA-- 293
Query: 185 ESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYN 242
P + G + AS G V +L +
Sbjct: 294 -----------------QPDWLDVITDTE-ADIGSDLRWSCVAS----GKPRPAVRWLRD 331
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
G+P+ + +RI L +ED+G+Y C A NK G S L
Sbjct: 332 GQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
Score = 56.4 bits (136), Expect = 2e-08
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
A+P ++ + + + L P + W+ +G+PL +R + +
Sbjct: 293 AQPDWLDVIT-DTEADIGSDLRWSCVAS--GKPRPAVRWLRDGQPLASQNRIEVSGG--- 346
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L +++ D G+Y C A N G + S +
Sbjct: 347 -ELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 138 bits (348), Expect = 5e-36
Identities = 64/345 (18%), Positives = 103/345 (29%), Gaps = 47/345 (13%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
P + + G + L P P W+ +G L R
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPP-PGGGPMGPTVWVKDGTGLVPSERVLVGPQ----R 62
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
L + D G Y+CR C + + E+G ++ +D
Sbjct: 63 LQVLNASHEDSGAYSCRQRLTQRVL-------CHFSVRVTDAPSSGDDEDGEDEAEDT-- 113
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQ---HLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
D P +T + L + F G+ T ++ +L N
Sbjct: 114 -----------GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP--AAGNPTPSISWLKN 160
Query: 243 GKPIEASHRI-RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
G+ HRI L + D G YTC NK+G + L+ +++S
Sbjct: 161 GREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH 220
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----NGKPI---------F 348
+P + G F C +D + ++W NG +
Sbjct: 221 RPILQAGLPANQT-AVLGSDVEFHC--KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 277
Query: 349 HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
K +D V+ + V D+GEY C A N G A
Sbjct: 278 LKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAW 322
Score = 119 bits (300), Expect = 1e-29
Identities = 56/360 (15%), Positives = 83/360 (23%), Gaps = 90/360 (25%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
AE P + G + P P W +G L R
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPP-PGGGPMGPTVWVKDGTGLVPSERVLVGPQ- 61
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL----------- 600
L +L E+SG Y CR + + ++ E
Sbjct: 62 ---RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118
Query: 601 ----------------------------------PEVEWFYNGKKLPHGHR-YRTFHDFG 625
P + W NG++ HR
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 626 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPD 685
L + + G Y C NK+GS +L V +
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD----------------------VLE 216
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV----EFLYNGKPIEASHRI 741
RP + + G F D + NG +
Sbjct: 217 RSPHRPILQAGLPANQT-AVLGSDVEFHCK--VYSDAQPHIQWLKHVEVNGSKVGPDGTP 273
Query: 742 RT---------VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQT 792
+ VL + ED G YTC A N G + S L V+ + +
Sbjct: 274 YVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV-VLPAEEEL 332
Score = 115 bits (288), Expect = 4e-28
Identities = 62/419 (14%), Positives = 105/419 (25%), Gaps = 110/419 (26%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
P Q G+ P G ++ +G + S R+
Sbjct: 5 AEVPGPEPGQQEQLVFGSGDAVELSCP-PPGGGPMGPTVWVKDGTGLVPSERVLVGPQ-- 61
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ----------------P 303
L++L ED+G Y+CR S G
Sbjct: 62 --RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA 119
Query: 304 PKFTSHI---KSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVS-D 358
P +T K L + ++ F C P +P + W NG+ ++R+ +
Sbjct: 120 PYWTRPERMDKKLLAVPAANTVRFRC---PAAGNPTPSISWLKNGREFRGEHRIGGIKLR 176
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIREL 418
+ + V D G Y C NK+G T+ V
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD------V---------------- 214
Query: 419 ENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFF 478
++ T G F C+
Sbjct: 215 ----------LERSPHRPILQAGLPANQT-AVLGSDVEFH------------CK------ 245
Query: 479 PSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKK 538
+ + LK + +++ P P + V
Sbjct: 246 --------VYSDAQPH----------IQWLKHVEVNG--SKVGPDGTPYVTV-------- 277
Query: 539 LPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILE 597
L T + +L + E++G Y C A N G A L + ++E
Sbjct: 278 LKTAGANTTDKELE--VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
Score = 92.0 bits (228), Expect = 3e-20
Identities = 57/412 (13%), Positives = 97/412 (23%), Gaps = 122/412 (29%)
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
+ P + GD+ C P W +G + RV +
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGG-PMGPTVWVKDGTGLVPSERVLVGPQ- 61
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELE 419
+ + DSG Y CR + +
Sbjct: 62 ---RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVR----------------VTDAPSSGD 102
Query: 420 NAQGQQPVAQAAPVAEAPKFITQISDVTQL---KEGQSAHFEARLTPVTDPDLVCELFSN 476
+ G+ AP + +L + F C
Sbjct: 103 DEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFR------------CP---- 146
Query: 477 FFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG 536
A P P ++ LK G+ E R
Sbjct: 147 ----------AAGNP---TP-------SISWLKNGREFRGEHR----------------- 169
Query: 537 KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL 596
G + +V+ ++ + G Y C NK+GS +L + ++
Sbjct: 170 ----IGGIKLRHQQWSLVMESVV---PSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP 222
Query: 597 ESQL-------------------------PEVEWF----YNGKKLPHGHRYRT------- 620
Q P ++W NG K+
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282
Query: 621 --FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILE 670
D + +L + E++G Y C A N G A L + ++E
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
Score = 83.9 bits (207), Expect = 1e-17
Identities = 44/272 (16%), Positives = 69/272 (25%), Gaps = 63/272 (23%)
Query: 53 QRQPSGPEETFAKPVFIVPLKPEFKL---GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL 109
+ + P + P + + KL A + +P I W+ NG+
Sbjct: 107 EDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAA--GNPTPSISWLKNGREF 164
Query: 110 ELGSRFK-TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERT 168
R +L + V D+G YTC N G I + ++ER+
Sbjct: 165 RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS------IRQTYTLDVLERS 218
Query: 169 QHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLI 228
H RP + + G F
Sbjct: 219 PH------------------------------RPILQAGLPANQT-AVLGSDVEFHCK-- 245
Query: 229 PVGDQTMTV----EFLYNGKPIEASHRIRT---------VHAFGMVVLEILGTKIEDTGV 275
D + NG + + VL + ED G
Sbjct: 246 VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGE 305
Query: 276 YTCRATNKWGQAEISVNLECVDKSKGQPPKFT 307
YTC A N G + S L + +
Sbjct: 306 YTCLAGNSIGFSHHSAWLVVLP-----AEEEL 332
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 136 bits (345), Expect = 9e-36
Identities = 57/333 (17%), Positives = 95/333 (28%), Gaps = 52/333 (15%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
P FI K + Q DP ++ W GK + D
Sbjct: 5 EPPRFIKEPKDQ-IGVSGGVASFVCQAT--GDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 124 V-TLDLTEVYD-RDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
L + + RD+ +Y C A N GE +
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL---------------------- 99
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
D P Q L + A + G+ + +
Sbjct: 100 ------------REDQLPSGFPNIDMGPQ-LKVVERTRTATMLCA--ASGNPDPEITWFK 144
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
+ P++ S + L+I ++ D G Y C ATN G S + +
Sbjct: 145 DFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRY-SSPANLYVRVQN 203
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
P+F+ S E + G + + C V P V+W + + ++ + + +
Sbjct: 204 VAPRFSILPMSHE-IMPGGNVNITCV--AVGSPMPYVKWMQGAEDLTPEDDMPVGRNV-- 258
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ DS Y C A + G A I
Sbjct: 259 ----LELTDVKDSANYTCVAMSSLGVIEAVAQI 287
Score = 134 bits (338), Expect = 7e-35
Identities = 65/323 (20%), Positives = 98/323 (30%), Gaps = 68/323 (21%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYR-TFH 549
E P+FI + D G A F + T DP V W GKK+ F
Sbjct: 3 GEEPPRFIKEPKDQI-GVSGGVASFVCQ---ATGDPKPRVTWNKKGKKVNSQRFETIEFD 58
Query: 550 DFGIVILDIL-YCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL-------- 600
+ +L I + VYEC A N G A L V + + +
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT-VLREDQLPSGFPNIDMGPQL 117
Query: 601 --------------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSG 640
PE+ WF + + L I E + G
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 641 VYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQH 700
YEC ATN G + S NL + P+F+
Sbjct: 178 KYECVATNSAGVRYS-------SPANLYVR----------------VQNVAPRFSILPMS 214
Query: 701 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 760
+ G + + VG V+++ + + + G VLE+ T ++
Sbjct: 215 HE-IMPGGNVNITC--VAVGSPMPYVKWMQGAEDLTPEDDMP----VGRNVLEL--TDVK 265
Query: 761 DTGVYTCRATNKWGQAEISVNLE 783
D+ YTC A + G E +
Sbjct: 266 DSANYTCVAMSSLGVIEAVAQIT 288
Score = 117 bits (294), Expect = 4e-29
Identities = 57/389 (14%), Positives = 102/389 (26%), Gaps = 111/389 (28%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
PP+F E + G +A F GD V + GK + +
Sbjct: 6 PPRFIKEPKDQI-GVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 262 -VLEILGTKI-EDTGVYTCRATNKWGQAEISVNL--ECVDKSKGQPPKFTSHIKSLEGLK 317
VL I + D VY C A N G+ + L D+ P + ++
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV-VE 121
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
+A C + +P+ ++ WF + P+ + + I + D G+Y
Sbjct: 122 RTRTATMLCAASG--NPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 378 VCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAP 437
C A N G ++ + +R AP
Sbjct: 180 ECVATNSAGVRYSS------------------PANLYVRVQ---------------NVAP 206
Query: 438 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPK 497
+F + G + + C VA +P+
Sbjct: 207 RFSILPMSHE-IMPGGNVNIT------------C--------------VAVGSPMPY--- 236
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILD 557
V ++ + L + + D
Sbjct: 237 -------VKWMQGAED-------------------------LTPEDDMP-VGRNVLELTD 263
Query: 558 ILYCYEENSGVYECRATNKYGSDVTKASL 586
+ ++S Y C A + G A +
Sbjct: 264 V-----KDSANYTCVAMSSLGVIEAVAQI 287
Score = 89.5 bits (222), Expect = 1e-19
Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 54/252 (21%)
Query: 57 SGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK 116
+ P + + + + + + P+ +I W + P++ +
Sbjct: 100 REDQLPSGFPNIDMGPQLK-VVERTRTATMLCAASGN--PDPEITWFKDFLPVDPSASNG 156
Query: 117 TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEG 176
L + + DQG Y C A N AG ++S
Sbjct: 157 RIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSP---------------------- 194
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT 236
A + P+F+ + G + + VG
Sbjct: 195 ---------------ANLYVRVQNVAPRFSILPMSHE-IMPGGNVNITC--VAVGSPMPY 236
Query: 237 VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
V+++ + + + G VLE+ T ++D+ YTC A + G E +
Sbjct: 237 VKWMQGAEDLTPEDDMP----VGRNVLEL--TDVKDSANYTCVAMSSLGVIEAVAQITVK 290
Query: 297 DKSKGQPPKFTS 308
PK +
Sbjct: 291 S-----LPKAGT 297
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 141 bits (357), Expect = 1e-35
Identities = 65/553 (11%), Positives = 141/553 (25%), Gaps = 90/553 (16%)
Query: 271 EDTGVYTC----RATNKWGQAEISVNLECVDKSKG-------QPPKFTSHIKSLEGLKDG 319
+D V C N + S + + Q ++E +
Sbjct: 5 QDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVE-VDVS 63
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC 379
S + + + W + + + + ++ I + +GEY+
Sbjct: 64 ASITLQVLVD--APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMV-ILKMTETQAGEYLL 120
Query: 380 RAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAP-- 437
++ T+ + L R++EN ++++ P
Sbjct: 121 FIQSEATNYTILFTVS------IRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174
Query: 438 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPK 497
+Q + E L + D+ C N + + + +
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCA-RN----ELGRECTRLFTIDLNQT 229
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR------TFHDF 551
T + + LK G+ + V + + W K L G+ +
Sbjct: 230 PQTTLPQLF-LKVGEPLWIRCKAVHV-NHGFGLTWELENKALEEGNYFEMSTYSTNRTMI 287
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVT-----KASLKCVSKTNLILESQ------- 599
I+ + ++G Y C ++ K + + + Q
Sbjct: 288 RILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFS 347
Query: 600 -------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
W ++ K P + + + I + G Y A N
Sbjct: 348 VRFKAYPQIRCTWTFSRKSFPCEQKGLD-NGYSISKFCNH---KHQPGEYIFHAENDDAQ 403
Query: 653 DVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFT--SEFQHLSNLSEGEIA 710
+L K ++ E+ + G P P +T N +E
Sbjct: 404 FTKMFTLNIRRKPQVLAEASASQASCFSDGYP------LPSWTWKKCSDKSPNCTE---- 453
Query: 711 HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770
I G G+ + + ++ + C A
Sbjct: 454 -----EITEGVWNRKANRKVFGQWV--------------SSSTLNMSEAIKGFLVKCCAY 494
Query: 771 NKWGQAEISVNLE 783
N G + ++ L
Sbjct: 495 NSLGTSCETILLN 507
Score = 109 bits (273), Expect = 4e-25
Identities = 52/364 (14%), Positives = 96/364 (26%), Gaps = 74/364 (20%)
Query: 39 EKVQEVEHALAGKYQRQPSGPEETFAK------PVFIVPLKPEFKLGEAQPLHLEAQVEP 92
K + + Y PE+ E + + L+ V+
Sbjct: 17 HKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSA--SITLQVLVD- 73
Query: 93 KNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152
N+ W+F L F + G V++ + ++ + G Y + A
Sbjct: 74 -APGNISCLWVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQSEATNYTI 131
Query: 153 STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHL 212
T+ R + + E +++L VP P
Sbjct: 132 LFTVSIRNTLLYTLRRPYFRKMEN-------QDALVCISESVP------EP--------- 169
Query: 213 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIED 272
VE++ E+ +V E
Sbjct: 170 -----------------------IVEWVLCDSQGESCKEESP----AVVKKEEKVLHELF 202
Query: 273 TGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVN 332
C A N+ G+ + ++ Q P+ T LK G+ C VN
Sbjct: 203 GTDIRCCARNELGRECTRLFTIDLN----QTPQTTL---PQLFLKVGEPLWIRCKAVHVN 255
Query: 333 DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD------IAYVQSHDSGEYVCRAWNKYG 386
+ W K + N +M + M ++ V +D+G Y C +
Sbjct: 256 -HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS 314
Query: 387 EDFT 390
+
Sbjct: 315 QSAL 318
Score = 104 bits (259), Expect = 2e-23
Identities = 40/349 (11%), Positives = 75/349 (21%), Gaps = 86/349 (24%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
L P+ L +PL + + + + W K LE G+ F+ +
Sbjct: 227 NQTPQTTL-PQLFLKVGEPLWIRCKA-VHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284
Query: 125 ------TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
++ V D G YTC + ++ T +
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVE--------------------- 323
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFT-SEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
+ + + E F +
Sbjct: 324 -----------------------KGFINATNSSEDYEIDQYEEFCFSVR--FKAYPQIRC 358
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
+ ++ K + + G Y A N Q L +
Sbjct: 359 TWTFSRKSFPCEQKGLD----NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN-IR 413
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGK---------PIF 348
+ P+ + ++ C P W
Sbjct: 414 ----RKPQVLAE---------ASASQASCFSD--GYPLPSWTWKKCSDKSPNCTEEITEG 458
Query: 349 HKNRVKMVSDFGFVVMD--IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
NR FG V + ++ C A+N G +
Sbjct: 459 VWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507
Score = 102 bits (254), Expect = 9e-23
Identities = 46/335 (13%), Positives = 84/335 (25%), Gaps = 70/335 (20%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
+ +P F+ E Q L E + P +EW+ E V
Sbjct: 140 TLLYTLRRPYFRKMENQDA-LVCISE--SVPEPIVEWVLCDSQGESCKEESP----AVVK 192
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
+ +++ C A N G T
Sbjct: 193 KEEKVLHELFGTDIRCCARNELGRECTRLFTI---------------------------- 224
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP 245
+ + PQ T L GE + + + K
Sbjct: 225 ------------DLNQTPQTTLPQLFLK---VGEPLWIRCK-AVHVNHGFGLTWELENKA 268
Query: 246 IEASHRIR------TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKS 299
+E + ++ + DTG YTC ++ Q S + V+K
Sbjct: 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKG 325
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
+ + + + F P+++ W + K K + +
Sbjct: 326 FINATNSSEDYEIDQ----YEEFCFSVRFKA--YPQIRCTWTFSRKSF--PCEQKGLDNG 377
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ H GEY+ A N + T+
Sbjct: 378 Y--SISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410
Score = 91.3 bits (226), Expect = 2e-19
Identities = 29/266 (10%), Positives = 68/266 (25%), Gaps = 48/266 (18%)
Query: 130 EVYDRDQGIYTCRAWNLAGE---TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEES 186
E ++D + C N S++ ++
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSES------------------------ 36
Query: 187 LRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI 246
P + + + E + + + ++ ++ +++ +
Sbjct: 37 ----PEDLGCALRPQSSGTVYEAAAVE-VDVSASITLQ--VLVDAPGNISCLWVFKHSSL 89
Query: 247 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKF 306
+ G+V + IL G Y ++ I + + +
Sbjct: 90 NCQPHFDLQN-RGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN-----TLLY 143
Query: 307 TSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDI 366
T +++ D+ C + PE VEW V +
Sbjct: 144 TLRRPYFRKMENQDA--LVC--ISESVPEPIVEWVLCDSQGESCKE----ESPAVVKKEE 195
Query: 367 AYVQSHDSGEYVCRAWNKYGEDFTRA 392
+ + C A N+ G + TR
Sbjct: 196 KVLHELFGTDIRCCARNELGRECTRL 221
Score = 76.3 bits (187), Expect = 1e-14
Identities = 29/208 (13%), Positives = 53/208 (25%), Gaps = 30/208 (14%)
Query: 492 VAEAPKF-ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
+ E T S+ ++ + + F R P + W ++ K P + +
Sbjct: 321 IVEKGFINATNSSEDYEIDQYEEFCFSVRFKA--YPQIRCTWTFSRKSFPCEQKGLD-NG 377
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ----------- 599
+ I + G Y A N +L K ++ E+
Sbjct: 378 YSISKFCNH---KHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGY 434
Query: 600 -LPEVEWFYNGKKLPHGHRY-----------RTFHDFGIVILDILYCYEENSGVYECRAT 647
LP W K P+ R + + + +C A
Sbjct: 435 PLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494
Query: 648 NKYGSDVTKASLKCVSKTNLILESQLPE 675
N G+ L I +
Sbjct: 495 NSLGTSCETILLNSPGPFPFIQDGGTKH 522
Score = 69.0 bits (168), Expect = 3e-12
Identities = 27/252 (10%), Positives = 59/252 (23%), Gaps = 66/252 (26%)
Query: 564 ENSGVYECRATNKYGSDVT---------------------KASLKCVSKTNLILESQLPE 602
S Y + + +L+ +
Sbjct: 25 GKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAP-----GNIS 79
Query: 603 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 662
W + L + + G+V + IL E +G Y ++ + ++
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNR-GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS-- 136
Query: 663 SKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV--G 720
+ + +T + E + A L+ +
Sbjct: 137 --------------------IRN-----TLLYTLRRPYFR-KMENQDA-----LVCISES 165
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
VE++ E+ +V E C A N+ G+ +
Sbjct: 166 VPEPIVEWVLCDSQGESCKEESP----AVVKKEEKVLHELFGTDIRCCARNELGRECTRL 221
Query: 781 NLECVVWSPSQT 792
+ +P T
Sbjct: 222 FTIDLNQTPQTT 233
Score = 53.9 bits (129), Expect = 1e-07
Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 7/96 (7%)
Query: 63 FAKPVFIVPLKPE-FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
K E +++ + + V K P ++ W F+ K +
Sbjct: 322 VEKGFINATNSSEDYEIDQYEEFCFS--VRFKAYPQIRCTWTFSRKSFPCEQKGLD---- 375
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
++ + G Y A N + T+
Sbjct: 376 NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
Score = 36.2 bits (83), Expect = 0.038
Identities = 6/40 (15%), Positives = 10/40 (25%)
Query: 564 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEV 603
+ +C A N G+ L I +
Sbjct: 484 IKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGGTKHH 523
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 135 bits (342), Expect = 1e-35
Identities = 60/322 (18%), Positives = 106/322 (32%), Gaps = 63/322 (19%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ +S V L G+S F + +P+ + + G+K+ R +
Sbjct: 2 MALLQVTISLSKVE-LSVGESKFFTCT--AIGEPESIDWYNPQGEKIISTQRVVVQKEGV 58
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQ------------ 599
L I E++G+Y C+AT+ G L+ K
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 118
Query: 600 --------LPEVEWFYNGKKLP--HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
P V W Y+ +++ +R+ + + IL+I + + G+Y C +
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNIN---KSDEGIYRCEGRVE 175
Query: 650 YGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EG 707
++ + +I+ PP + Q N + G
Sbjct: 176 ARGEIDFRDII------VIVNV-------------------PPAISMP-QKSFNATAERG 209
Query: 708 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767
E F G + + NGK IE + + + L + D G Y C
Sbjct: 210 EEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVC 265
Query: 768 RATNKWGQAEISVNLECVVWSP 789
RATNK G+ E L+ V+
Sbjct: 266 RATNKAGEDEKQAFLQ--VFVQ 285
Score = 127 bits (320), Expect = 1e-32
Identities = 68/340 (20%), Positives = 108/340 (31%), Gaps = 67/340 (19%)
Query: 62 TFAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRFKTTA 119
+ A + L E +GE++ A EP+ I+W G+ + R
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCTAIGEPE-----SIDWYNPQGEKIISTQRVVVQK 55
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST---TIYCSTKESLIERTQHPKGEEG 176
+ L + D GIY C+A + G+T +T IY
Sbjct: 56 EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY------------------- 96
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT 236
+ F +GE A
Sbjct: 97 ------------------------QKLTFREVVSPQE-FKQGEDAEVVCR--VSSSPAPA 129
Query: 237 VEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 295
V +LY+ + + R + A L+IL D G+Y C + ++
Sbjct: 130 VSWLYHNEEVTTISDNRFAMLANN--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 187
Query: 296 VDKSKGQPPKFTSHIKSLE-GLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVK 354
+ PP + KS + G+ F C PE + WF NGK I +
Sbjct: 188 IVNV---PPAISMPQKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYI 242
Query: 355 MVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + + + + D G YVCRA NK GED +A +
Sbjct: 243 LKGSNTELT--VRNIINSDGGPYVCRATNKAGEDEKQAFL 280
Score = 98.0 bits (244), Expect = 1e-22
Identities = 56/325 (17%), Positives = 94/325 (28%), Gaps = 89/325 (27%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
+ T + +E G+S F CT + +PE + G+ I RV + +
Sbjct: 4 LLQVTISLSKVELSV-GESKFFTCT--AIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS 60
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
+ I D+G Y C+A + G+ +
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEAT--------------------VVLE------ 94
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE------------------------ 458
+ + F +S K+G+ A
Sbjct: 95 ----------IYQKLTFREVVSPQE-FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS 143
Query: 459 -ARLTPVTDPDLVCELFSNFFPS-------------QGQQPVAQAAPVAEAPKFITQI-- 502
R + + +L N S +G+ + P I+
Sbjct: 144 DNRFAMLANNNLQ---ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 200
Query: 503 -SDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 561
+ T + G+ F R P+ + WF NGK + +Y L +
Sbjct: 201 SFNAT-AERGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNI 255
Query: 562 YEENSGVYECRATNKYGSDVTKASL 586
+ G Y CRATNK G D +A L
Sbjct: 256 INSDGGPYVCRATNKAGEDEKQAFL 280
Score = 97.6 bits (243), Expect = 2e-22
Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 36/195 (18%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLP--HGHRYRTF 548
+ + F +S K+G+ A R V+ P V W Y+ +++ +R+
Sbjct: 95 IYQKLTFREVVSPQE-FKQGEDAEVVCR---VSSSPAPAVSWLYHNEEVTTISDNRFAML 150
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKY-GSDVTKASLKCVSKTNLILESQ-------- 599
+ + IL+I + + G+Y C + G + + V+ I Q
Sbjct: 151 ANNNLQILNIN---KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAE 207
Query: 600 ---------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644
P + WF NGK + +Y L + + G Y C
Sbjct: 208 RGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVC 265
Query: 645 RATNKYGSDVTKASL 659
RATNK G D +A L
Sbjct: 266 RATNKAGEDEKQAFL 280
Score = 94.5 bits (235), Expect = 2e-21
Identities = 50/252 (19%), Positives = 75/252 (29%), Gaps = 61/252 (24%)
Query: 63 FAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTA 119
+ K F + P EFK GE + +V + P + W+++ + + S RF A
Sbjct: 96 YQKLTFREVVSPQEFKQGE--DAEVVCRVS--SSPAPAVSWLYHNEEVTTISDNRFAMLA 151
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
+ L + + D+GIY C A I
Sbjct: 152 NN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV----------------- 191
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTV 237
PP + Q N + GE F G +
Sbjct: 192 ----------------------PPAISMP-QKSFNATAERGEEMTFSCR--ASGSPEPAI 226
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
+ NGK IE + + + L + D G Y CRATNK G+ E L+
Sbjct: 227 SWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284
Query: 298 KSKGQPPKFTSH 309
H
Sbjct: 285 -----QHHHHHH 291
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 136 bits (345), Expect = 4e-35
Identities = 72/333 (21%), Positives = 109/333 (32%), Gaps = 57/333 (17%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
F + + Q + L P + L WIFN P +R + + G
Sbjct: 102 ENFKTRTRSTVSVRRGQGMVLLCGP-PPHSGELSYAWIFNEYPSYQDNRRFVSQETG--N 158
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
L + +V D G YTC N LI R GE
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVL-----GPPTPLILRNDGVMGE----------- 202
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVE-FLYN 242
P+ +F +G E A G+ T+ +
Sbjct: 203 ---------------YEPKIEVQFPETVPAEKGTTVKLECFAL----GNPVPTILWRRAD 243
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
GKPI R + +LEI + ED G Y C A N G+ L
Sbjct: 244 GKPIARKARRHKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT-FY----A 294
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P + I + + +S +EC P+ W NG P+ ++R+++
Sbjct: 295 QPNWVQIINDIH-VAMEESVFWECKAN--GRPKPTYRWLKNGDPLLTRDRIQIEQG---- 347
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
++I V D+G Y C A NK+G F+ A +
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
Score = 136 bits (344), Expect = 6e-35
Identities = 79/435 (18%), Positives = 135/435 (31%), Gaps = 96/435 (22%)
Query: 200 GRPPQFTSEFQHLS--NLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 255
G P F E H+ SE + G+ + + NG ++ R
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVK----GNPKPHIRWKLNGTDVDIGMDFRYS 58
Query: 256 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQA---EISVNLECVDKSKGQPPKFTSHIKS 312
G +++ K +D G Y C ATN +G E + F + +S
Sbjct: 59 VVDGSLLI-NNPNKTQDAGTYQCIATNSFGTIVSREAKLQF-------AYLENFKTRTRS 110
Query: 313 LEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH 372
++ G C P + EL W N P + NR + + G + IA V+
Sbjct: 111 TVSVRRGQGMVLLCGP-PPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKS 167
Query: 373 DSGEYVCRAWNKYGED-----FTRATIKCFGKGGVYLDSLQPESLARIRELEN------- 420
D G Y C N T ++ G G Y ++ + + +
Sbjct: 168 DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLEC 227
Query: 421 -AQGQQPVAQ-------AAPVAEAPKFIT-----QISDVTQLKEGQ----------SAHF 457
A G PV P+A + +I + Q G
Sbjct: 228 FALGN-PVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVA 286
Query: 458 EARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 517
+ +LT P ++ I+D+ + +S +E
Sbjct: 287 KGQLT-----------------------------FYAQPNWVQIINDIH-VAMEESVFWE 316
Query: 518 ARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 576
+ P W NG L R + + I + ++G+Y+C A NK
Sbjct: 317 CK---ANGRPKPTYRWLKNGDPLLTRDRIQ-IEQGTLNITIVN---LSDAGMYQCVAENK 369
Query: 577 YGSDVTKASLKCVSK 591
+G + A L +++
Sbjct: 370 HGVIFSSAELSVIAE 384
Score = 124 bits (313), Expect = 6e-31
Identities = 56/326 (17%), Positives = 94/326 (28%), Gaps = 77/326 (23%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYRTFHD 550
A F T+ ++ GQ P +L W +N R+ +
Sbjct: 98 FAYLENFKTRTRSTVSVRRGQGMVLLCGP-PPHSGELSYAWIFNEYPSYQDNRRFVSQET 156
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSD-VTKASLKCVSKTNLILESQ---------- 599
+ I + + + G Y C TN + V + + + ++
Sbjct: 157 GNLYIAKVE---KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213
Query: 600 --------------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENS 639
+P + W K R + + I + +E++
Sbjct: 214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNF---QQEDA 270
Query: 640 GVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQ 699
G YEC A N G +V K L P +
Sbjct: 271 GSYECVAENSRGKNVAKGQLT-------FYA--------------------QPNWVQIIN 303
Query: 700 HLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT 757
+ ++ E + +A+ G T +L NG P+ RI+ L I
Sbjct: 304 DIH-VAMEESVFWECKAN----GRPKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIV 354
Query: 758 KIEDTGVYTCRATNKWGQAEISVNLE 783
+ D G+Y C A NK G S L
Sbjct: 355 NLSDAGMYQCVAENKHGVIFSSAELS 380
Score = 121 bits (305), Expect = 7e-30
Identities = 69/432 (15%), Positives = 121/432 (28%), Gaps = 118/432 (27%)
Query: 301 GQPPKFTSHIKSLEGLKD--GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
G P F + D C + +P+ + W NG + +
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKG--NPKPHIRWKLNGTDVDIGMDFRYSVV 60
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIREL 418
G +++ ++ D+G Y C A N +G +R A+++
Sbjct: 61 DGSLLI-NNPNKTQDAGTYQCIATNSFGTIVSRE--------------------AKLQ-- 97
Query: 419 ENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE-------------------- 458
A F T+ ++ GQ
Sbjct: 98 --------------FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYP 143
Query: 459 -----ARLTPVTDPDLV-------------CELFSNFFPSQGQQPVAQ------AAPVAE 494
R +L C + + + P
Sbjct: 144 SYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEY 203
Query: 495 APKFITQISDVTQLKEGQSAHFE--ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
PK Q + ++G + E A PV P + W K R +
Sbjct: 204 EPKIEVQFPETVPAEKGTTVKLECFALGNPV--PT--ILWRRADGKPIARKARRHKSNGI 259
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASL---------------KCVSKTNLILE 597
+ I + +E++G YEC A N G +V K L + ++ E
Sbjct: 260 LEIPNF---QQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWE 316
Query: 598 -----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
P W NG L R + + I + ++G+Y+C A NK+G
Sbjct: 317 CKANGRPKPTYRWLKNGDPLLTRDRIQ-IEQGTLNITIVN---LSDAGMYQCVAENKHGV 372
Query: 653 DVTKASLKCVSK 664
+ A L +++
Sbjct: 373 IFSSAELSVIAE 384
Score = 109 bits (274), Expect = 8e-26
Identities = 57/320 (17%), Positives = 100/320 (31%), Gaps = 62/320 (19%)
Query: 493 AEAPKFITQISDVTQ--LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFH 549
P F+ + S V E + + +P + W NG + G +R +
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKG--NPKPHIRWKLNGTDVDIGMDFRYSVV 60
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQ--------- 599
D ++I + +++G Y+C ATN +G+ V+ +A L+ N ++
Sbjct: 61 DGSLLINNPNK--TQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQ 118
Query: 600 -------------LPEVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECR 645
W +N R+ + + I + + + G Y C
Sbjct: 119 GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVE---KSDVGNYTCV 175
Query: 646 ATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 705
TN + + P + P + +
Sbjct: 176 VTNTVTNH----------------KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVP-AE 218
Query: 706 EGEIAHFE--ASLIPVGDQTMTVE-FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDT 762
+G E A G+ T+ +GKPI R + +LEI + ED
Sbjct: 219 KGTTVKLECFAL----GNPVPTILWRRADGKPIARKARRHKSNG----ILEIPNFQQEDA 270
Query: 763 GVYTCRATNKWGQAEISVNL 782
G Y C A N G+ L
Sbjct: 271 GSYECVAENSRGKNVAKGQL 290
Score = 83.3 bits (206), Expect = 3e-17
Identities = 42/245 (17%), Positives = 69/245 (28%), Gaps = 59/245 (24%)
Query: 57 SGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRF 115
+ +P V + + LE +P I W +GKP+ +R
Sbjct: 196 NDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL--GNPVPTILWRRADGKPIARKARR 253
Query: 116 KTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEE 175
+ L++ D G Y C A N G+ +
Sbjct: 254 HKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT------------------ 291
Query: 176 GLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQ 233
P + + ++ E + +A+ G
Sbjct: 292 ----FYA-------------------QPNWVQIINDIH-VAMEESVFWECKAN----GRP 323
Query: 234 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
T +L NG P+ RI+ L I + D G+Y C A NK G S L
Sbjct: 324 KPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379
Query: 294 ECVDK 298
+ +
Sbjct: 380 SVIAE 384
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 130 bits (328), Expect = 1e-34
Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 13/202 (6%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
+ G P E + ++ GE A + VG +++ GK + S + +
Sbjct: 2 AMSGEAPGIRKEMKDVT-TKLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSS 58
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGL 316
L ++ + ED GVYTC ATN+ G+ E S L + P+F E
Sbjct: 59 DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLL-LQ----ATPQFHPGYPLKEKY 113
Query: 317 --KDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH-D 373
G + P + WFH K + + + + + + + + VQ
Sbjct: 114 YGAVGSTLRLHVMYI--GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTH 171
Query: 374 SGEYVCRAWNKYGEDFTRATIK 395
+G+Y + N +G ++
Sbjct: 172 AGKYKVQLSNVFGTVDAILDVE 193
Score = 122 bits (309), Expect = 3e-32
Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 29/197 (14%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRT 547
A EAP ++ DVT K G++A + + P ++W+ GK+L +Y+
Sbjct: 1 GAMSGEAPGIRKEMKDVT-TKLGEAAQLSCQ---IVGRPLPDIKWYRFGKELIQSRKYKM 56
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK------------------CV 589
D L ++ +E+ GVY C ATN+ G T + L
Sbjct: 57 SSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGA 116
Query: 590 SKTNLILESQ-----LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC-YEENSGVYE 643
+ L L +P + WF+ K L + + L + + ++G Y+
Sbjct: 117 VGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYK 176
Query: 644 CRATNKYGSDVTKASLK 660
+ +N +G+ ++
Sbjct: 177 VQLSNVFGTVDAILDVE 193
Score = 108 bits (272), Expect = 3e-27
Identities = 46/238 (19%), Positives = 77/238 (32%), Gaps = 51/238 (21%)
Query: 65 KPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
P +K KLGE L Q+ + P I+W GK L ++K ++D
Sbjct: 7 APGIRKEMKDVTTKLGE--AAQLSCQIVGRPLP--DIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
TL + D+G+YTC A N GE TS+ + +Q
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL----------------------LLQA- 99
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLY 241
PQF + G +G + + +
Sbjct: 100 ------------------TPQFHPGYPLKEKYYGAVGSTLRLHVM--YIGRPVPAMTWFH 139
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILG-TKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
K ++ S I + L + + G Y + +N +G + +++E DK
Sbjct: 140 GQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
Score = 107 bits (269), Expect = 8e-27
Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 32/186 (17%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P+++W+ GK+L +Y+ D L ++ +E+ GVY C ATN+ G T + L
Sbjct: 37 PDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLL 96
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIP 718
+ PQF + G
Sbjct: 97 -------LQA--------------------TPQFHPGYPLKEKYYGAVGSTLRLHVM--Y 127
Query: 719 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG-TKIEDTGVYTCRATNKWGQAE 777
+G + + + K ++ S I + L + + G Y + +N +G +
Sbjct: 128 IGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVD 187
Query: 778 ISVNLE 783
+++E
Sbjct: 188 AILDVE 193
Score = 76.3 bits (188), Expect = 6e-16
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
+ G P E + ++ GE A + VG +++ GK + S + +
Sbjct: 2 AMSGEAPGIRKEMKDVT-TKLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSS 58
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L ++ + ED GVYTC ATN+ G+ E S L
Sbjct: 59 DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLL 96
Score = 65.9 bits (161), Expect = 2e-12
Identities = 25/196 (12%), Positives = 54/196 (27%), Gaps = 41/196 (20%)
Query: 430 AAPVAEAPKFITQISDVTQLKEGQSAHFE-----------------------ARLTPVTD 466
A EAP ++ DVT K G++A + +D
Sbjct: 1 GAMSGEAPGIRKEMKDVT-TKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD 59
Query: 467 PDLVCELFSNFFPS-QGQ----------QPVAQAA-PVAEAPKFI--TQISDVTQLKEGQ 512
+G + + + P+F + + G
Sbjct: 60 GRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGS 119
Query: 513 SAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC-YEENSGVYEC 571
+ P + WF+ K L + + L + + ++G Y+
Sbjct: 120 TLRLHVMYI--GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKV 177
Query: 572 RATNKYGSDVTKASLK 587
+ +N +G+ ++
Sbjct: 178 QLSNVFGTVDAILDVE 193
Score = 56.6 bits (137), Expect = 3e-09
Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 5/97 (5%)
Query: 64 AKPVFI--VPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
A P F PLK ++ L L P + W K L+
Sbjct: 99 ATPQFHPGYPLKEKYYGAVGSTLRLHVMY--IGRPVPAMTWFHGQKLLQNSENITIENTE 156
Query: 122 GFVTLDLTEV-YDRDQGIYTCRAWNLAGETFTSTTIY 157
+ L + V G Y + N+ G +
Sbjct: 157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 134 bits (339), Expect = 4e-34
Identities = 50/432 (11%), Positives = 106/432 (24%), Gaps = 67/432 (15%)
Query: 271 EDTGVYTC----RATNKWGQAEISVNLECVDKSKG-------QPPKFTSHIKSLEGLKDG 319
+D V C N + S + + Q ++E +
Sbjct: 5 QDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVE-VDVS 63
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC 379
S + + + W + + + + G V M I + +GEY+
Sbjct: 64 ASITLQVLVDA--PGNISCLWVFKHSSLNCQPHFDLQNR-GVVSMVILKMTETQAGEYLL 120
Query: 380 RAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKF 439
++ T+ + L R++EN ++++ P
Sbjct: 121 FIQSEATNYTILFTVS------IRNTLLYTLRRPYFRKMENQDALVCISESVPEPI---- 170
Query: 440 IT------QISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVA 493
+ Q + E L + D+ C N G + + +
Sbjct: 171 VEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCA-RN---ELG-RECTRLFTID 225
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR------T 547
T + + LK G+ + V + + W K L G+ +
Sbjct: 226 LNQTPQTTLPQLF-LKVGEPLWIRCKAVHV-NHGFGLTWELENKALEEGNYFEMSTYSTN 283
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVT--------------KASLKCVSKTN 593
I+ + ++G Y C ++ +
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEE 343
Query: 594 LILE-----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
W ++ K P + + ++ G Y A N
Sbjct: 344 FCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGY----SISKFCNHKHQPGEYIFHAEN 399
Query: 649 KYGSDVTKASLK 660
+L
Sbjct: 400 DDAQFTKMFTLN 411
Score = 124 bits (311), Expect = 2e-30
Identities = 60/471 (12%), Positives = 125/471 (26%), Gaps = 73/471 (15%)
Query: 130 EVYDRDQGIYTCRAWNLA--GETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESL 187
E ++D + C N + ++ Y ES
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSES------------------------ 36
Query: 188 RRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIE 247
P + + + E + + + + ++ +++ +
Sbjct: 37 ---PEDLGCALRPQSSGTVYEAAAVE-VDVSASITLQV--LVDAPGNISCLWVFKHSSLN 90
Query: 248 ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFT 307
+ G+V + IL G Y ++ I + S +T
Sbjct: 91 CQPHFD-LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV-----SIRNTLLYT 144
Query: 308 SHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIA 367
+++ D+ C + PE VEW V +
Sbjct: 145 LRRPYFRKMENQDA--LVC--ISESVPEPIVEWVLCDSQGESCKE----ESPAVVKKEEK 196
Query: 368 YVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPV 427
+ + C A N+ G + TR + L + +L G+
Sbjct: 197 VLHELFGTDIRCCARNELGRECTRL----------FTIDLNQTPQTTLPQLFLKVGEPLW 246
Query: 428 AQAAPVAEAPKF-ITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPS------ 480
+ V F +T + L+EG T T ++ S+ +
Sbjct: 247 IRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYT 306
Query: 481 -QGQQPVAQAAP--VAEAPKF-ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG 536
+ +Q+A + E T S+ ++ + + F R P + W ++
Sbjct: 307 CSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKA--YPQIRCTWTFSR 364
Query: 537 KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
K P + + ++ G Y A N +L
Sbjct: 365 KSFPCEQKGLDNGY----SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
Score = 112 bits (280), Expect = 2e-26
Identities = 47/351 (13%), Positives = 93/351 (26%), Gaps = 74/351 (21%)
Query: 49 AGKYQRQPSGPEETF------AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEW 102
+ Y PE+ + E + + L+ V+ N+ W
Sbjct: 27 SSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSA--SITLQVLVDA--PGNISCLW 82
Query: 103 IFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKE 162
+F L F + G V++ + ++ + G Y + A T+
Sbjct: 83 VFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTL 141
Query: 163 SLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 222
R + + E +++L VP+
Sbjct: 142 LYTLRRPYFRKMEN-------QDALVCISESVPEP------------------------- 169
Query: 223 FEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 282
VE++ E+ +V E C A N
Sbjct: 170 -------------IVEWVLCDSQGESCKEES----PAVVKKEEKVLHELFGTDIRCCARN 212
Query: 283 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH 342
+ G+ + + + + L LK G+ C VN + W
Sbjct: 213 ELGRECTRLFTIDL------NQTPQTTLPQLF-LKVGEPLWIRCKAVHVN-HGFGLTWEL 264
Query: 343 NGKPIFHKNRVKMV------SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387
K + N +M + + ++ V +D+G Y C + +
Sbjct: 265 ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
Score = 111 bits (278), Expect = 3e-26
Identities = 38/314 (12%), Positives = 83/314 (26%), Gaps = 66/314 (21%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
++ + + + V + S + + ++ W + L + + G+
Sbjct: 47 QSSGTVYEAAAVE-VDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPHFD-LQNRGV 102
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ-------------- 599
V + IL E +G Y ++ + ++ + T L +
Sbjct: 103 VSMVILKMTETQAGEYLLFIQSEATNYTILFTVS-IRNTLLYTLRRPYFRKMENQDALVC 161
Query: 600 ------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 653
P VEW + +V + +E C A N+ G +
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEES----PAVVKKEEKVLHELFGTDIRCCARNELGRE 217
Query: 654 VTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE 713
T+ + + L L GE
Sbjct: 218 CTRLFTIDL----------------------------NQTPQTTLPQLF-LKVGEPLWIR 248
Query: 714 ASLIPVGDQTMTVEFLYNGKPIEASHRIR------TVHAFGMVVLEILGTKIEDTGVYTC 767
+ + + K +E + ++ + DTG YTC
Sbjct: 249 CK-AVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307
Query: 768 RATNKWGQ-AEISV 780
++ Q A +++
Sbjct: 308 SSSKHPSQSALVTI 321
Score = 108 bits (272), Expect = 2e-25
Identities = 42/468 (8%), Positives = 103/468 (22%), Gaps = 117/468 (25%)
Query: 369 VQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPV- 427
S Y + + G L ++ +E +
Sbjct: 22 SSVGKSSSYPMVSESPEDL-------------GCALRPQSSGTVYEAAAVEVDVSA-SIT 67
Query: 428 ----AQAAPVAEAPKFITQISDVTQLKEGQSAHFEAR------LTPVTDPDL---VCELF 474
A + + L + R + +T+ + +
Sbjct: 68 LQVLVDAPGNIS----CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFI- 122
Query: 475 SNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY 534
+ + + + + +++ + + + P+ +VEW
Sbjct: 123 QS---EATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISE----SVPEPIVEWVL 175
Query: 535 NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK----------- 583
+ +V + +E C A N+ G + T+
Sbjct: 176 CDSQGESCKEES----PAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQ 231
Query: 584 -------------ASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYR------TFHDF 624
++C + + + W K L G+ +
Sbjct: 232 TTLPQLFLKVGEPLWIRCKAVHV----NHGFGLTWELENKALEEGNYFEMSTYSTNRTMI 287
Query: 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVP 684
I+ + ++G Y C ++ A + I+E
Sbjct: 288 RILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVT-------IVE-------------- 323
Query: 685 DSEDGRPPQFTSEFQHLS-NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 743
+ + + E F + + ++ K +
Sbjct: 324 ------KGFINATNSSEDYEIDQYEEFCFSVR--FKAYPQIRCTWTFSRKSFPCEQKGLD 375
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791
+ G Y A N Q L + S ++
Sbjct: 376 ----NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL--NIRSGTK 417
Score = 100 bits (251), Expect = 1e-22
Identities = 44/336 (13%), Positives = 81/336 (24%), Gaps = 70/336 (20%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
+ +P F+ E Q L E + P +EW+ E V
Sbjct: 140 TLLYTLRRPYFRKMENQDA-LVCISE--SVPEPIVEWVLCDSQGESCKEES----PAVVK 192
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
+ +++ C A N G T
Sbjct: 193 KEEKVLHELFGTDIRCCARNELGRECTRLFTI---------------------------- 224
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP 245
+ L L GE + + + K
Sbjct: 225 --------------DLNQTPQTTLPQLF-LKVGEPLWIRCK-AVHVNHGFGLTWELENKA 268
Query: 246 IEASHRIR------TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKS 299
+E + ++ + DTG YTC ++ Q S + V+K
Sbjct: 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKG 325
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
+ + + + F P+++ W + K K + +
Sbjct: 326 FINATNSSEDYE----IDQYEEFCFSVRFKA--YPQIRCTWTFSRKSF--PCEQKGLDNG 377
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ H GEY+ A N + T+
Sbjct: 378 Y--SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
Score = 83.6 bits (206), Expect = 4e-17
Identities = 30/252 (11%), Positives = 54/252 (21%), Gaps = 64/252 (25%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK------TT 118
L P+ L +PL + + + + W K LE G+ F+
Sbjct: 227 NQTPQTTL-PQLFLKVGEPLWIRCKA-VHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284
Query: 119 ADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
+ ++ V D G YTC + ++ T
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVT------------------------ 320
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLS-NLSEGEIAHFEASLIPVGDQTMTV 237
I + + + + E F +
Sbjct: 321 -IVE-------------------KGFINATNSSEDYEIDQYEEFCFSVR--FKAYPQIRC 358
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
+ ++ K + + G Y A N Q L
Sbjct: 359 TWTFSRKSFPCEQKGLD----NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414
Query: 298 KSKGQPPKFTSH 309
K H
Sbjct: 415 -----GTKHHHH 421
Score = 60.5 bits (146), Expect = 1e-09
Identities = 15/149 (10%), Positives = 40/149 (26%), Gaps = 21/149 (14%)
Query: 637 ENSGVYECRATNKYGSDVTKAS---LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQ 693
++ V +C N +D + VS+ P + + +
Sbjct: 5 QDLPVIKCVLINHKNNDSSVGKSSSYPMVSE--------------SPEDLGCALRPQSSG 50
Query: 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLE 753
E + + + + ++ +++ + + G+V +
Sbjct: 51 TVYEAAAVE-VDVSASITLQV--LVDAPGNISCLWVFKHSSLNCQPHFD-LQNRGVVSMV 106
Query: 754 ILGTKIEDTGVYTCRATNKWGQAEISVNL 782
IL G Y ++ I +
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTV 135
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 127 bits (322), Expect = 5e-34
Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 9/198 (4%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHA 257
P F E ++L+ + A + G V++ GK I A
Sbjct: 2 AMAPHFKEELRNLN-VRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLK 317
G L I +D VY RATN+ G + +LE +K PK + ++
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH-AL 117
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD-FGFVVMDIAYVQSHDSGE 376
G+ + P+ + W I + +++ ++ V+ D+G
Sbjct: 118 RGEVVSIKI--PFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 377 YVCRAWNKYGEDFTRATI 394
YV A N++G D +
Sbjct: 176 YVVCAKNRFGIDQKTVEL 193
Score = 109 bits (273), Expect = 2e-27
Identities = 39/196 (19%), Positives = 74/196 (37%), Gaps = 33/196 (16%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKL-PHGHRYR-TFH 549
A AP F ++ ++ ++ +A + VT P +V+W+ GK++ G +YR
Sbjct: 2 AMAPHFKEELRNLN-VRYQSNATLVCK---VTGHPKPIVKWYRQGKEIIADGLKYRIQEF 57
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL--------------------KCV 589
G L I ++++ VY+ RATN+ GS ASL +
Sbjct: 58 KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
Query: 590 SKTNLILESQ-----LPEVEWFYNGKKLPHGHRYRTFHD-FGIVILDILYCYEENSGVYE 643
+ ++ P + W + + Y+ ++ +++G Y
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 644 CRATNKYGSDVTKASL 659
A N++G D L
Sbjct: 178 VCAKNRFGIDQKTVEL 193
Score = 102 bits (256), Expect = 5e-25
Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 28/186 (15%)
Query: 601 PEVEWFYNGKKL-PHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
P V+W+ GK++ G +YR G L I ++++ VY+ RATN+ GS AS
Sbjct: 34 PIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTAS 93
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 718
L+ V P+ + GE+ +
Sbjct: 94 LE----------------------VEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIP--F 128
Query: 719 VGDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
G + + I+ + + V ++ G + +D G Y A N++G +
Sbjct: 129 SGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ 188
Query: 778 ISVNLE 783
+V L+
Sbjct: 189 KTVELD 194
Score = 97.1 bits (242), Expect = 3e-23
Identities = 36/232 (15%), Positives = 69/232 (29%), Gaps = 45/232 (19%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-GSRFK-TTADFGF 123
P F L+ + L +V P ++W GK + G +++ G+
Sbjct: 5 PHFKEELRN-LNVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
L + V D D +Y RA N G + ++
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLE-------------------------- 95
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
V P+ + GE+ + G + +
Sbjct: 96 ----------VEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIP--FSGKPDPVITWQKGQ 142
Query: 244 KPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
I+ + + V ++ G + +D G Y A N++G + +V L+
Sbjct: 143 DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
Score = 94.8 bits (236), Expect = 2e-22
Identities = 40/289 (13%), Positives = 75/289 (25%), Gaps = 100/289 (34%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF- 359
P F +++L ++ +A C +T P+ V+W+ GK I + +F
Sbjct: 2 AMAPHFKEELRNLN-VRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 360 -GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIREL 418
G+ + IA V D+ Y RA N+ G A+++ V
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE------V---------------- 96
Query: 419 ENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFF 478
+ PK + + V G+ +
Sbjct: 97 ----------EVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIP------------------ 127
Query: 479 PSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKK 538
P +T K
Sbjct: 128 --------FSGKPDPV----------ITWQKGQD-------------------------L 144
Query: 539 LPHGHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ + Y+ ++ +++G Y A N++G D L
Sbjct: 145 IDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Score = 66.7 bits (163), Expect = 1e-12
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHA 746
P F E ++L+ + A + G V++ GK I A
Sbjct: 2 AMAPHFKEELRNLN-VRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
G L I +D VY RATN+ G + +L
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
Score = 59.7 bits (145), Expect = 2e-10
Identities = 21/159 (13%), Positives = 42/159 (26%), Gaps = 46/159 (28%)
Query: 1 MVKATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPE 60
V+ATN GS + + +L+ V+ P
Sbjct: 78 QVRATNQGGSVSGTASLE----------------------VEV---------------PA 100
Query: 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVE--PKNDPNLKIEWIFNGKPLELGSRFKTT 118
+ P + + + + ++ P P I W ++ ++
Sbjct: 101 KIHL-PKTLEGMG-AVHALRGEVVSIKIPFSGKPD--P--VITWQKGQDLIDNNGHYQVI 154
Query: 119 AD-FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ V +D G Y A N G + +
Sbjct: 155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 129 bits (327), Expect = 1e-32
Identities = 72/544 (13%), Positives = 137/544 (25%), Gaps = 162/544 (29%)
Query: 56 PSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS-- 113
PS E P + + + +E + + +P W N + +
Sbjct: 7 PSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAK--GNPAPSFHWTRNSRFFNIAKDP 64
Query: 114 RFKTTADFGFVTLDLTEVYDR--DQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHP 171
R G + +D +G Y C A N G ++
Sbjct: 65 RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRI---------------- 108
Query: 172 KGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 231
L+ + P + E + EG + + P G
Sbjct: 109 --------------RLQV----------SKSPLWPKENLDPVVVQEGAPLTLQCN-PPPG 143
Query: 232 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDT-GVYTCRATNKWGQ---- 286
+ + ++ + + + G L ++D Y+C A +
Sbjct: 144 LPSPVIFWMSSSMEPITQDKRVSQGHNG--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQ 201
Query: 287 -AEISVNLECVDKSKGQPPKFTSHIKSLEGL--KDGDSAHFECTLTPVNDPELKVEWFHN 343
++ + + P F + G EC + P + W+
Sbjct: 202 KNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS--GVPTPDIAWYKK 259
Query: 344 GKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVY 403
G + ++ K + + I V DSGEY C A NK G +++
Sbjct: 260 GGDLP-SDKAKFENFNK--ALRITNVSEEDSGEYFCLASNKMGSIRHTISVR-------- 308
Query: 404 LDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP 463
V AP ++ + ++ L G+
Sbjct: 309 -----------------------------VKAAPYWLDEPKNLI-LAPGEDGRLV----- 333
Query: 464 VTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPV 523
C A P P V + G+ P+
Sbjct: 334 -------CR--------------ANGNPK---PT-------VQWMVNGE---------PL 353
Query: 524 TDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 583
+ R I+ D + VY+C +N++G +
Sbjct: 354 QSAP--------------PNPNREVAGDTIIFRDTQ---ISSRAVYQCNTSNEHGYLLAN 396
Query: 584 ASLK 587
A +
Sbjct: 397 AFVS 400
Score = 122 bits (307), Expect = 6e-30
Identities = 73/432 (16%), Positives = 124/432 (28%), Gaps = 119/432 (27%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI--FHKNRVKMVSDF 359
QPP T + D+ EC +P W N + RV M
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAK--GNPAPSFHWTRNSRFFNIAKDPRVSMRRRS 72
Query: 360 GFVV--MDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRE 417
G +V GEY C A NK+G + R++
Sbjct: 73 GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNR--------------------IRLQ- 111
Query: 418 LENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE------------------- 458
V+++P + + D ++EG +
Sbjct: 112 ---------------VSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM 156
Query: 459 ------ARLTPVTDPDLV--------------CELFSNFFPSQGQQPVAQ------AAPV 492
R++ + DL C +F + Q+
Sbjct: 157 EPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVA 216
Query: 493 AEAPKFI--TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
P F+ + + G E + P + W+ G LP +
Sbjct: 217 ERTPSFMYPQGTASSQMVLRGMDLLLECIAS--GVPTPDIAWYKKGGDLPSDKAKFENFN 274
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ----------- 599
+ I ++ EE+SG Y C A+NK GS S++ + + E +
Sbjct: 275 KALRITNVS---EEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGR 331
Query: 600 ---------LPEVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
P V+W NG+ L + R I+ D + VY+C +N
Sbjct: 332 LVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQ---ISSRAVYQCNTSN 388
Query: 649 KYGSDVTKASLK 660
++G + A +
Sbjct: 389 EHGYLLANAFVS 400
Score = 118 bits (298), Expect = 8e-29
Identities = 58/328 (17%), Positives = 112/328 (34%), Gaps = 77/328 (23%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYRTFHD 550
V+++P + + D ++EG + P P V+ W + + R H+
Sbjct: 112 VSKSPLWPKENLDPVVVQEGAPLTLQCNP-PPGLPSPVIFWMSSSMEPITQDKRVSQGHN 170
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDV---TKASLKCVSKTNLILESQ-------- 599
+ +++ ++ Y C A + + +LK V T + E
Sbjct: 171 GDLYFSNVML--QDMQTDYSCNARFHFTHTIQQKNPFTLK-VLTTRGVAERTPSFMYPQG 227
Query: 600 -----------------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYE 636
P++ W+ G LP + + I ++ E
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVS---E 284
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
E+SG Y C A+NK GS S++ + P +
Sbjct: 285 EDSGEYFCLASNKMGSIRHTISVR-------VKA--------------------APYWLD 317
Query: 697 EFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEI 754
E ++L L+ GE A+ G+ TV+++ NG+P++++ G +
Sbjct: 318 EPKNLI-LAPGEDGRLVCRAN----GNPKPTVQWMVNGEPLQSAPPNPNREVAGDT-IIF 371
Query: 755 LGTKIEDTGVYTCRATNKWGQAEISVNL 782
T+I VY C +N+ G + +
Sbjct: 372 RDTQISSRAVYQCNTSNEHGYLLANAFV 399
Score = 108 bits (272), Expect = 1e-25
Identities = 54/322 (16%), Positives = 100/322 (31%), Gaps = 58/322 (18%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP--HGHRYRTFH 549
+ + P Q + + + E +P W N + R
Sbjct: 13 LTQPPTITKQSAKDHIVDPRDNILIECEAKG--NPAPSFHWTRNSRFFNIAKDPRVSMRR 70
Query: 550 DFGIVILDIL--YCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQL------ 600
G +++D EE G Y+C A NK+G+ ++ + L+ VSK+ L + L
Sbjct: 71 RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQ-VSKSPLWPKENLDPVVVQ 129
Query: 601 -----------------PEVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVY 642
P + W + + R H+ + +++ ++ Y
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVM--LQDMQTDY 187
Query: 643 ECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLS 702
C A + + K L+ R P F S
Sbjct: 188 SCNARFHFTHTI-------QQKNPFTLKVL----------TTRGVAERTPSFMYPQGTAS 230
Query: 703 NLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 760
+ G E I G T + + G + + + + + L I E
Sbjct: 231 SQMVLRGMDLLLEC--IASGVPTPDIAWYKKGGDLPSD-KAKFENFNK--ALRITNVSEE 285
Query: 761 DTGVYTCRATNKWGQAEISVNL 782
D+G Y C A+NK G ++++
Sbjct: 286 DSGEYFCLASNKMGSIRHTISV 307
Score = 84.2 bits (208), Expect = 2e-17
Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 56/245 (22%)
Query: 57 SGPEETFAKPVFIVPLKPEF--KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR 114
+ P F+ P + L LE P I W G L +
Sbjct: 211 TTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS--GVPTPDIAWYKKGGDLP-SDK 267
Query: 115 FKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGE 174
K L +T V + D G Y C A N G + ++
Sbjct: 268 AKFENFNK--ALRITNVSEEDSGEYFCLASNKMGSIRHTISV------------------ 307
Query: 175 EGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGD 232
+++ P + E ++L L+ GE A+ G+
Sbjct: 308 ----RVKA-------------------APYWLDEPKNLI-LAPGEDGRLVCRAN----GN 339
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
TV+++ NG+P++++ G + T+I VY C +N+ G +
Sbjct: 340 PKPTVQWMVNGEPLQSAPPNPNREVAGDT-IIFRDTQISSRAVYQCNTSNEHGYLLANAF 398
Query: 293 LECVD 297
+ +D
Sbjct: 399 VSVLD 403
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 125 bits (316), Expect = 6e-32
Identities = 42/199 (21%), Positives = 73/199 (36%), Gaps = 9/199 (4%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF- 258
P F E ++L+ + A G V++ GK I A + F
Sbjct: 2 AMAPHFKEELRNLN-VRYQSNATLVCK--VTGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 259 -GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLK 317
G L I +D VY RATN+ G + +LE +K PK + ++
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH-AL 117
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF-VVMDIAYVQSHDSGE 376
G+ + + P+ + W I + +++ F ++ V+ D+G
Sbjct: 118 RGEVVSIKIPFS--GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 377 YVCRAWNKYGEDFTRATIK 395
YV A N++G D +
Sbjct: 176 YVVCAKNRFGIDQKTVELD 194
Score = 101 bits (253), Expect = 1e-23
Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 31/196 (15%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYR-TFHD 550
A AP F ++ ++ + +A ++T P V+W+ GK++ G +YR
Sbjct: 2 AMAPHFKEELRNLNV-RYQSNATLVCKVTGHPKPI--VKWYRQGKEIIADGLKYRIQEFK 58
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL---------- 600
G L I ++++ VY+ RATN+ GS ASL+ + L L
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALR 118
Query: 601 ---------------PEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYEC 644
P + W + + Y+ ++ +++G Y
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178
Query: 645 RATNKYGSDVTKASLK 660
A N++G D L
Sbjct: 179 CAKNRFGIDQKTVELD 194
Score = 96.4 bits (240), Expect = 5e-22
Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 28/185 (15%)
Query: 601 PEVEWFYNGKKL-PHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
P V+W+ GK++ G +YR G L I ++++ VY+ RATN+ GS AS
Sbjct: 34 PIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTAS 93
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 718
L+ V P+ + GE+ +
Sbjct: 94 LE----------------------VEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPF-- 128
Query: 719 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGM-VVLEILGTKIEDTGVYTCRATNKWGQAE 777
G + + I+ + + + ++ G + +D G Y A N++G +
Sbjct: 129 SGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ 188
Query: 778 ISVNL 782
+V L
Sbjct: 189 KTVEL 193
Score = 84.8 bits (210), Expect = 5e-18
Identities = 36/236 (15%), Positives = 70/236 (29%), Gaps = 45/236 (19%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-GSRFK-TTADFGF 123
P F L+ + L +V P ++W GK + G +++ G+
Sbjct: 5 PHFKEELRNL-NVRYQSNATLVCKVTGHPKP--IVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
L + V D D +Y RA N G + ++
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLE-------------------------- 95
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
V P+ + GE+ + G + +
Sbjct: 96 ----------VEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPF--SGKPDPVITWQKGQ 142
Query: 244 KPIEASHRIRTVHAFGM-VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
I+ + + + ++ G + +D G Y A N++G + +V L+ D
Sbjct: 143 DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 198
Score = 65.9 bits (161), Expect = 8e-12
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 6/102 (5%)
Query: 488 QAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYR 546
+ PK + + V G+ + P + PD V+ W + + Y+
Sbjct: 97 EVPAKIHLPKTLEGMGAVH-ALRGEVVSIKI---PFSGKPDPVITWQKGQDLIDNNGHYQ 152
Query: 547 -TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
++ +++G Y A N++G D L
Sbjct: 153 VIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
Score = 58.2 bits (141), Expect = 3e-09
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF- 747
P F E ++L+ + A G V++ GK I A + F
Sbjct: 2 AMAPHFKEELRNLN-VRYQSNATLVCK--VTGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 748 -GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
G L I +D VY RATN+ G + +LE V P
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE--VEVP 99
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 126 bits (318), Expect = 2e-31
Identities = 74/496 (14%), Positives = 128/496 (25%), Gaps = 147/496 (29%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVE-FLYNGKPIEASHRIRTVHA 257
+ P F E + + S A E AS G+ + +G + +R + +
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKAS----GNPMPEIIWIRSDGTAVGDVPGLRQISS 57
Query: 258 FGMVVLEIL----GTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSL 313
G +V + VY C A N++G IS + V + + +
Sbjct: 58 DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSI-ISRD---VHVRAVVAQYYEADVNKE 113
Query: 314 EGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD-----IA 367
++ G+SA +C + D V W + + + D ++V+ I
Sbjct: 114 HVIR-GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGA---EYDGKYLVLPSGELHIR 169
Query: 368 YVQSHDS-GEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQP 426
V D Y CR ++ + +A +
Sbjct: 170 EVGPEDGYKSYQCRTKHRLTGETRL----------------------------SATKGRL 201
Query: 427 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPV 486
V + AP+ + +L + C
Sbjct: 202 VITEPISSSAPRTPALVQKPLELMVAHTISLL------------C--------------P 235
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR 546
AQ P W+ +
Sbjct: 236 AQGFPAPS-----------------------------------FRWYKFIEGTTRKQAVV 260
Query: 547 TFHDFGIV--ILDILYCYEENSGVYECRATNKYGSDVTKASL---------------KCV 589
V L I E+SG Y C N G + + L
Sbjct: 261 LNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVD 320
Query: 590 SKTNLILE-----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644
+ + + V W +GK + H +L I +E+ G+Y+C
Sbjct: 321 FGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQC 370
Query: 645 RATNKYGSDVTKASLK 660
N S A LK
Sbjct: 371 FVRNDRESAEASAELK 386
Score = 120 bits (302), Expect = 2e-29
Identities = 74/525 (14%), Positives = 132/525 (25%), Gaps = 185/525 (35%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHKNRVKMVSDFG 360
+ P F + + A EC + +P ++ W +G + ++ +S G
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASG--NPMPEIIWIRSDGTAVGDVPGLRQISSDG 59
Query: 361 ----FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIR 416
Y Q + Y C A N++G +R +R
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRD--------------------VHVR 99
Query: 417 ELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSN 476
A + ++ + G SA + C
Sbjct: 100 ----------------AVVAQYYEADVNKEH-VIRGNSAVIK------------CL---- 126
Query: 477 FFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG 536
+ F+ +S W +
Sbjct: 127 --------------IPSFVADFVEVVS----------------------------WHTDE 144
Query: 537 KKLPHGH-----RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD----------- 580
++ +Y + I ++ E+ Y+CR ++ +
Sbjct: 145 EENYFPGAEYDGKYLVLPSGELHIREVG--PEDGYKSYQCRTKHRLTGETRLSATKGRLV 202
Query: 581 VTKASLKCVSKTNLILESQL-------------------PEVEWFYNGKKLPHGHRYRTF 621
+T+ +T +++ L P W+ +
Sbjct: 203 ITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN 262
Query: 622 HDFGIV--ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQ 679
V L I E+SG Y C N G + + L +
Sbjct: 263 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT-------VTA--------- 306
Query: 680 PAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEA 737
P + + + G A F + G+ TV ++ +GK I
Sbjct: 307 -----------PLSAKIDPPTQT-VDFGRPAVFTCQYT----GNPIKTVSWMKDGKAIGH 350
Query: 738 SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
S VL I K ED G+Y C N AE S L
Sbjct: 351 SES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Score = 110 bits (276), Expect = 4e-26
Identities = 55/341 (16%), Positives = 88/341 (25%), Gaps = 69/341 (20%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKN-DPNLKIEWIFNGKPL-----ELGSRFKTTA 119
+ + E + ++ + D + W + + E ++
Sbjct: 104 QYYEADVNKE-HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 162
Query: 120 DFGFVTLDLTEVYDRD-QGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
L + EV D Y CR + T T +TK L+
Sbjct: 163 SG---ELHIREVGPEDGYKSYQCRTKH----RLTGETRLSATKGRLV------------- 202
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMT 236
+ + P+ + Q L A G +
Sbjct: 203 ---------------ITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ----GFPAPS 243
Query: 237 VEFLYNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ + + V L I +ED+G Y C N G + L
Sbjct: 244 FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 303
Query: 295 CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVK 354
P + + G A F C T +P V W +GK I H
Sbjct: 304 VTA-----PLSAKIDPPTQT-VDFGRPAVFTCQYT--GNPIKTVSWMKDGKAIGHSES-- 353
Query: 355 MVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
V+ I V+ D G Y C N A +K
Sbjct: 354 --------VLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386
Score = 100 bits (250), Expect = 8e-23
Identities = 52/409 (12%), Positives = 93/409 (22%), Gaps = 100/409 (24%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRFKTTADFGFV 124
PVF+ + +E + +P +I WI +G + + + G +
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASG--NPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 125 TLDLTEVYDR----DQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKI 180
D +Y C A N G +
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDV------------------------- 96
Query: 181 QDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP-VGDQTMTVEF 239
+R + ++ + G A + + V D V +
Sbjct: 97 -----HVRA----------VVAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSW 140
Query: 240 LYNGKPIEASHRI--RTVHAFGMVVLEILGTKIEDT-GVYTCRATNKWGQAEISVN---- 292
+ + L I ED Y CR ++
Sbjct: 141 HTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 200
Query: 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKN 351
L + P+ + ++ L + C P P W+ + K
Sbjct: 201 LVITEPISSSAPRTPALVQKPLELMVAHTISLLC---PAQGFPAPSFRWYKFIEGTTRKQ 257
Query: 352 RVKMVSDFGFV--VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQP 409
V + V + I DSG+Y+C N G + +
Sbjct: 258 AVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT-------------- 303
Query: 410 ESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 458
V T + G+ A F
Sbjct: 304 -----------------------VTAPLSAKIDPPTQT-VDFGRPAVFT 328
Score = 80.8 bits (199), Expect = 2e-16
Identities = 41/239 (17%), Positives = 62/239 (25%), Gaps = 62/239 (25%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
+ + P ++ +L A + L + P W +
Sbjct: 205 EPISSSAPRTPALVQKPLELMVAHTISLLCPAQG--FPAPSFRWYKFIEGTTRKQAVVLN 262
Query: 119 ADFGFV--TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEG 176
V TL + + D G Y C N G T +
Sbjct: 263 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT------------------- 303
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQT 234
+ P + + + G A F + G+
Sbjct: 304 ---VTA-------------------PLSAKIDPPTQT-VDFGRPAVFTCQYT----GNPI 336
Query: 235 MTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
TV ++ +GK I S VL I K ED G+Y C N AE S L
Sbjct: 337 KTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 119 bits (299), Expect = 5e-31
Identities = 42/195 (21%), Positives = 69/195 (35%), Gaps = 15/195 (7%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
Q T + LS GE F +G+ + G+ I ++ R+
Sbjct: 2 LLQVTISLSKVE-LSVGESKFFTC--TAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS 58
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
L I IED G+Y C+AT+ GQ + + V Q F + E K G+
Sbjct: 59 RLTIYNANIEDAGIYRCQATDAKGQTQEA----TVVLEIYQKLTFREVVSPQE-FKQGED 113
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKMVSDFGFVVMDIAYVQSHDSGEYVC 379
A C + P V W ++ + + + R M+++ I + D G Y C
Sbjct: 114 AEVVC--RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ---ILNINKSDEGIYRC 168
Query: 380 RAWNKYGEDFTRATI 394
+ + I
Sbjct: 169 EGRVEARGEIDFRDI 183
Score = 94.8 bits (236), Expect = 2e-22
Identities = 31/189 (16%), Positives = 67/189 (35%), Gaps = 31/189 (16%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
+ +S V L G+S F +P+ + + G+K+ R +
Sbjct: 2 LLQVTISLSKVE-LSVGESKFFTCT---AIGEPESIDWYNPQGEKIISTQRVVVQKEGVR 57
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK----------------TNLILE 597
L I E++G+Y C+AT+ G + + + + +
Sbjct: 58 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVV 117
Query: 598 -----SQLPEVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKY 650
S P V W Y+ +++ +R+ + + IL+I + + G+Y C +
Sbjct: 118 CRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNI---NKSDEGIYRCEGRVEA 174
Query: 651 GSDVTKASL 659
++ +
Sbjct: 175 RGEIDFRDI 183
Score = 89.8 bits (223), Expect = 1e-20
Identities = 29/187 (15%), Positives = 53/187 (28%), Gaps = 32/187 (17%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
+ G+K+ R + L I E++G+Y C+AT+ G +
Sbjct: 32 SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL 91
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
+ + F +GE A
Sbjct: 92 EIYQ--------------------------KLTFREVVSPQE-FKQGEDAEVVCR--VSS 122
Query: 721 DQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
V +LY+ + + R + A L+IL D G+Y C +
Sbjct: 123 SPAPAVSWLYHNEEVTTISDNRFAMLANN--NLQILNINKSDEGIYRCEGRVEARGEIDF 180
Query: 780 VNLECVV 786
++ +V
Sbjct: 181 RDIIVIV 187
Score = 86.0 bits (213), Expect = 2e-19
Identities = 38/286 (13%), Positives = 77/286 (26%), Gaps = 106/286 (37%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
+ T + +E L G+S F CT + +PE + G+ I RV + +
Sbjct: 2 LLQVTISLSKVE-LSVGESKFFTCT--AIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS 58
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
+ I D+G Y C+A + G+ +
Sbjct: 59 RLTIYNANIEDAGIYRCQATDAKGQTQEAT--------------------VVLE------ 92
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQG 482
+ + F +S K+G+ A C
Sbjct: 93 ----------IYQKLTFREVVSPQE-FKQGEDAEVV------------CR---------- 119
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG 542
++P V W Y+ +++
Sbjct: 120 ----VSSSPAPA-----------------------------------VSWLYHNEEVTTI 140
Query: 543 --HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+R+ + + IL+I + + G+Y C + ++ +
Sbjct: 141 SDNRFAMLANNNLQILNI---NKSDEGIYRCEGRVEARGEIDFRDI 183
Score = 82.5 bits (204), Expect = 3e-18
Identities = 35/235 (14%), Positives = 60/235 (25%), Gaps = 57/235 (24%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
A + L E +GE + + + G+ + R +
Sbjct: 1 ALLQVTISLSKVELSVGE--SKFFTCTAIGEPESI--DWYNPQGEKIISTQRVVVQKEGV 56
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTST---TIYCSTKESLIERTQHPKGEEGLEK 179
L + D GIY C+A + G+T +T IY
Sbjct: 57 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY---------------------- 94
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 239
+ F +GE A V +
Sbjct: 95 ---------------------QKLTFREVVSPQE-FKQGEDAEVVCR--VSSSPAPAVSW 130
Query: 240 LYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
LY+ + + R + A L+IL D G+Y C + ++
Sbjct: 131 LYHNEEVTTISDNRFAMLANN--NLQILNINKSDEGIYRCEGRVEARGEIDFRDI 183
Score = 68.7 bits (168), Expect = 2e-13
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
Q T + LS GE F +G+ + G+ I ++ R+
Sbjct: 2 LLQVTISLSKVE-LSVGESKFFTC--TAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS 58
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
L I IED G+Y C+AT+ GQ + + ++
Sbjct: 59 RLTIYNANIEDAGIYRCQATDAKGQTQ-EATVVLEIYQK 96
Score = 56.7 bits (137), Expect = 2e-09
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 63 FAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTA 119
+ K F + P EFK GE + +V + P + W+++ + + S RF A
Sbjct: 94 YQKLTFREVVSPQEFKQGE--DAEVVCRV--SSSPAPAVSWLYHNEEVTTISDNRFAMLA 149
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ L + + D+GIY C A I
Sbjct: 150 N-N--NLQILNINKSDEGIYRCEGRVEARGEIDFRDI 183
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 126 bits (318), Expect = 8e-31
Identities = 72/583 (12%), Positives = 150/583 (25%), Gaps = 136/583 (23%)
Query: 271 EDTGVYTC----RATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFEC 326
+ C + G ++ SV+ + PP L ++ GD C
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPG-----EPSPPSIHPGKSDLI-VRVGDEIRLLC 58
Query: 327 TLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
T V+W ++N+ ++ ++G+Y C +
Sbjct: 59 TDPGF------VKWTFEILDETNENKQNEWI--------TEKAEATNTGKYTCTNKHGLS 104
Query: 387 EDFTRATIKCFGKGGVYLDSLQPESLARI-RELENAQGQQPVAQ-AAPVAEAPKFITQIS 444
+Y+ P L + R L + + + E + +
Sbjct: 105 NS-------------IYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGC 151
Query: 445 DVTQLKEGQSAHFEARLT----PVTDPD----LVCELFSNFFPSQGQQPVAQAAPVAEAP 496
L + + + V L C + ++ + + P +A
Sbjct: 152 QGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-----TFHDF 551
++ L+EG+ + V + W + +Y F+
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDV-SSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE 270
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPE--------- 602
L I +SGV+ C A N +GS +L+ V K + + +
Sbjct: 271 RQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGEN 330
Query: 603 ---------------VEWFYNGKKLPHGHRYRTFHDFGIVI-----LDILYCYEENSGVY 642
+W Y + + I L + G Y
Sbjct: 331 VDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTY 390
Query: 643 ECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLS 702
+N + ++ V+ P+ +
Sbjct: 391 TFLVSNSDVNAAIAFNVY-VN--------------------------TKPEILTY----- 418
Query: 703 NLSEGEIAHF--EASLIPVGDQTMTVEFLYNGK----------PIEASHRIRTVHAFG-- 748
A+ G T+++ + P++ + FG
Sbjct: 419 --DRLVNGMLQCVAA----GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKL 472
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791
+V I + + G C+A N G+ N ++
Sbjct: 473 VVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF--AFKGNNK 513
Score = 120 bits (302), Expect = 1e-28
Identities = 79/569 (13%), Positives = 151/569 (26%), Gaps = 125/569 (21%)
Query: 55 QPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR 114
QPS + P I P K + + + L ++W F ++
Sbjct: 26 QPSVSPGEPSPPS-IHPGKSDLIVRVGDEIRLLCTDPGF------VKWTFEILDETNENK 78
Query: 115 FKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGE 174
+ + G YTC + S ++
Sbjct: 79 QNE--------WITEKAEATNTGKYTCTNKHGLS---NSIYVF----------------- 110
Query: 175 EGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT 234
V D P + + L E P+ D
Sbjct: 111 -------------------VRD-----PAKLFLVDRSLY-GKEDNDTLVR---CPLTDPE 142
Query: 235 MTVEFLY--NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+T L GKP+ R G+++ + + C + G++ +S
Sbjct: 143 VTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSV--KRAYHRLCLHCSVDQE-GKSVLSEK 199
Query: 293 LEC-VDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN 351
V + P + S L++G+ CT+ V+ + W +
Sbjct: 200 FILKVRPAFKAVPVVSVSKASYL-LREGEEFTVTCTIKDVSSS-VYSTWKRENSQTKLQE 257
Query: 352 RVKMVSDFGFVVMD-----IAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDS 406
+ F I+ + +DSG ++C A N +G T++ KG + +
Sbjct: 258 KYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI---N 314
Query: 407 LQPESLARIRELENAQGQQPV-AQAAPVAEAPKFITQISDVTQLKEGQSAH--FEARLTP 463
+ P + + V +A P P+ I + + E
Sbjct: 315 IFPMINTTVFVNDGENVDLIVEYEAFP---KPEHQQWIYMNRTFTDKWEDYPKSENESNI 371
Query: 464 VTDPDLVCELFSNFFPSQG-------QQPVAQAAP-----VAEAPKFITQISDVTQLKEG 511
+L + ++G AA V P+ +T V
Sbjct: 372 RYVSELH---LTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVN----- 423
Query: 512 QSAHFEARLT-PVT-DPDLVVEWFYNGKKLP------------HGHRYRTFHDFGIVILD 557
L P+ ++W++ + +V
Sbjct: 424 ------GMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSS 477
Query: 558 ILYCYEENSGVYECRATNKYGSDVTKASL 586
I +++G EC+A N G +
Sbjct: 478 IDSSAFKHNGTVECKAYNDVGKTSAYFNF 506
Score = 113 bits (285), Expect = 1e-26
Identities = 63/514 (12%), Positives = 128/514 (24%), Gaps = 99/514 (19%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
PP L + G+ V++ + ++
Sbjct: 36 PPSIHPGKSDLI-VRVGDEIRLLCTDP--------GFVKWTFEILDETNENKQNE----- 81
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
+ +TG YTC + I V + P K +SL K+
Sbjct: 82 ---WITEKAEATNTGKYTCTNKHGLS-NSIYVFVR-------DPAKLFLVDRSLY-GKED 129
Query: 320 DSAHFECTLTPVNDPELKVEWFH--NGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
+ C P+ DPE+ GKP+ R G ++ + +++
Sbjct: 130 NDTLVRC---PLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVK--RAYHRLCL 184
Query: 378 VCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPV----AQAAPV 433
C + G+ + P +G++ +
Sbjct: 185 HCSVDQE-GKSVLSEKFILKVRPAF---KAVPVVSVSKASYLLREGEEFTVTCTIKDVSS 240
Query: 434 AEAPKFIT------QISDVTQLKEGQSAHFEA------RLTPVTDPDL---VCELFSNFF 478
+ T Q + F ++ D +C +N
Sbjct: 241 ---SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYA-NN-- 294
Query: 479 PSQGQQPVAQAAPVAEAPKFI--TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG 536
+ G V V + I+ + +G++ P+ W Y
Sbjct: 295 -TFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQ-WIYMN 352
Query: 537 KKLPHGHRYRTFHDFGIVI-----LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
+ + I L + G Y +N + ++ +K
Sbjct: 353 RTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK 412
Query: 592 ---------TNLILE-----SQLPEVEWFYNGKKLP------------HGHRYRTFHDFG 625
N +L+ P ++W++ +
Sbjct: 413 PEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKL 472
Query: 626 IVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+V I +++G EC+A N G +
Sbjct: 473 VVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506
Score = 70.1 bits (171), Expect = 1e-12
Identities = 39/254 (15%), Positives = 70/254 (27%), Gaps = 51/254 (20%)
Query: 63 FAKPVFIV--PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTAD 120
K + + + + + + L + E +WI+ + ++
Sbjct: 308 VDKGFINIFPMINTTVFVNDGENVDLIVEYE-AFPKPEHQQWIYMNRTFTDKWEDYPKSE 366
Query: 121 FGFV-----TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEE 175
L LT + + G YT N + +Y +TK ++ + +
Sbjct: 367 NESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILT---YDRLVN 423
Query: 176 GLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM 235
G L+ AG P P F + S++PV QT+
Sbjct: 424 G---------MLQCVAAGFP------EPTIDWYFCPGTEQRCSA------SVLPVDVQTL 462
Query: 236 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 295
GK + V I + + G C+A N G+ N
Sbjct: 463 NSSGPPFGKLV--------------VQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFA- 507
Query: 296 VDKSKGQPPKFTSH 309
K H
Sbjct: 508 FKG----NNKEQIH 517
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 122 bits (307), Expect = 1e-30
Identities = 51/347 (14%), Positives = 89/347 (25%), Gaps = 68/347 (19%)
Query: 484 QPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-----DPDLVVEWFYNGKK 538
QP A +L EG+ P P + + W N
Sbjct: 7 QPAAHTGAARSCRFRGRHYKREFRL-EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSA 65
Query: 539 LPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK----------- 587
T L +L +E+SG Y C N D L+
Sbjct: 66 RTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPF 125
Query: 588 ----------------CVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDI 631
C + + +++W+ + L + G L +
Sbjct: 126 ISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR-GTTHLLV 184
Query: 632 LYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRP 691
E++G Y C T + + ELR + ++
Sbjct: 185 HDVALEDAGYYRCVLTFAHEGQQYNITRSI-------------ELR-----IKKKKEETI 226
Query: 692 PQFTSEFQHLSNLSEGEIAHFEAS-LIPVGDQTMTVE-FLYNGKPIEASHRIRTVH---- 745
P S + +S S G + G T+ + N IE+++ V
Sbjct: 227 PVIISPLKTIS-ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPR 285
Query: 746 --------AFGMVVLEILGTKIEDTGV-YTCRATNKWGQAEISVNLE 783
+ V L ED + + C N + ++
Sbjct: 286 QEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
Score = 120 bits (301), Expect = 9e-30
Identities = 51/357 (14%), Positives = 90/357 (25%), Gaps = 70/357 (19%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKN-----DPNLKIEWIFNGKPLELGSRFKTTAD 120
K EF+L E +P+ L P P + + W N + +T
Sbjct: 19 RFRGRHYKREFRL-EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW 77
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKI 180
L L D G Y C N + S +
Sbjct: 78 AQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFEN------------------- 118
Query: 181 QDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE---ASLIPVGDQTMTV 237
F + L+ S + +
Sbjct: 119 ---------------------TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKI 157
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE----ISVNL 293
++ + ++ + + + G L + +ED G Y C T + S+ L
Sbjct: 158 QWYKDSLLLDKDNE-KFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIEL 216
Query: 294 ECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECT-LTPVNDPELKVEWF-HNGKPI---- 347
K + P S +K++ G C P + W+ N I
Sbjct: 217 RIKKKKEETIPVIISPLKTIS-ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAY 275
Query: 348 ----FHKNRVKMVSDFGFVVMD----IAYVQSHDSG-EYVCRAWNKYGEDFTRATIK 395
+ + S+ ++ V D ++ C N R T+K
Sbjct: 276 PGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
Score = 109 bits (273), Expect = 4e-26
Identities = 52/411 (12%), Positives = 100/411 (24%), Gaps = 90/411 (21%)
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV-----GDQTMTVEFL 240
QPA + ++ EGE +P + + +
Sbjct: 3 PFTLQPAAHTGAAR-SCRFRGRHYKR-EFRLEGEPVALRCPQVPYWLWASVSPRINLTWH 60
Query: 241 YNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSK 300
N T L +L ED+G Y C N ++S+ L +
Sbjct: 61 KNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFEN-- 118
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFEC---TLTPVNDPELKVEWFHNGKPIFHKNRVKMVS 357
F I + L S C + + ++K++W+ + + N K +S
Sbjct: 119 --TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE-KFLS 175
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRE 417
G + + V D+G Y C + T
Sbjct: 176 VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI--------------------- 214
Query: 418 LENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNF 477
+ + P I+ + ++ G C
Sbjct: 215 -------ELRIKKKKEETIPVIISPLKTIS-ASLGSRLTIP------------C----KV 250
Query: 478 FPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGK 537
F G + ++ T ++ P V +
Sbjct: 251 FLGTGTPL----------TTMLWWTANDTHIES-------------AYPGGRVTEGPRQE 287
Query: 538 KLPHGHRYRTFHDFGIVILDILYCYEENSGV-YECRATNKYGSDVTKASLK 587
+ Y V L E+ + ++C N + ++K
Sbjct: 288 YSENNENYIE------VPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
Score = 84.4 bits (208), Expect = 9e-18
Identities = 28/208 (13%), Positives = 55/208 (26%), Gaps = 32/208 (15%)
Query: 584 ASLKCVSKTNLILES--QLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
+L+C + S + W N T L +L +E+SG
Sbjct: 36 VALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGT 95
Query: 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHL 701
Y C N D L+ + E F +
Sbjct: 96 YVCTTRNASYCDKMSIELR-------VFE-------------------NTDAFLPFISYP 129
Query: 702 SNLSEGEIAHFE---ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTK 758
L+ S + +++ + ++ + + + G L +
Sbjct: 130 QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE-KFLSVRGTTHLLVHDVA 188
Query: 759 IEDTGVYTCRATNKWGQAEISVNLECVV 786
+ED G Y C T + ++ +
Sbjct: 189 LEDAGYYRCVLTFAHEGQQYNITRSIEL 216
Score = 44.3 bits (104), Expect = 1e-04
Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 18/114 (15%)
Query: 59 PEETFAKPVFIVPLKP-EFKLGEAQPLHLEAQV-EPKNDPNLKIEWIFNGKPL------- 109
++ PV I PLK LG L + +V P + W
Sbjct: 220 KKKEETIPVIISPLKTISASLGS--RLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPG 277
Query: 110 ---ELGSRFKTTAD---FGFVTLDLTEVYDRDQGI-YTCRAWNLAGETFTSTTI 156
G R + + + + V L V D + + C N TT+
Sbjct: 278 GRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 116 bits (291), Expect = 1e-29
Identities = 30/208 (14%), Positives = 67/208 (32%), Gaps = 23/208 (11%)
Query: 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGM 260
FT + + E F V +++N K I +++ G+
Sbjct: 3 DPFTKSELAVE-ILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 261 VVLEILGTKIEDTGVYTCRATNKWGQAEISVN--------------LECVDKSKGQPPKF 306
+ + + + ED G YT + + +V + + + Q P F
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 307 TSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDI 366
++ + + +C + + E + W+ + + I + G + I
Sbjct: 121 VEYLSWE--VTGECNVLLKCKVANIK-KETHIVWYKDEREISVDEKHDFKD--GICTLLI 175
Query: 367 AYVQSHDSGEYVCRAWNKYGEDFTRATI 394
D+G Y + G+D +R +
Sbjct: 176 TEFSKKDAGIYEVILKDDRGKDKSRLKL 203
Score = 112 bits (282), Expect = 2e-28
Identities = 33/231 (14%), Positives = 77/231 (33%), Gaps = 33/231 (14%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTAD--FGF 123
F ++ E + Q E K N K+ +IFN K + G ++K D G
Sbjct: 3 DPFTKSELA-VEILEKGQVRFWMQAE-KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+ + + ++ D D+G YT + + ++ +
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLV----------------------GDVF 98
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSN-LSEGEIAHFEASLIPVGDQTMTVEFLYN 242
++ + + + P F ++LS ++ + + + + + + +
Sbjct: 99 KKLQKEAEFQRQEWIRKQGPHFV---EYLSWEVTGECNVLLKCKVANI-KKETHIVWYKD 154
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+ I + G+ L I +D G+Y + G+ + + L
Sbjct: 155 EREISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
Score = 106 bits (267), Expect = 2e-26
Identities = 27/185 (14%), Positives = 68/185 (36%), Gaps = 17/185 (9%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHD--FGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
+V + +N K++ G +Y+ D GI+ + + +E+ G Y + + ++ +
Sbjct: 33 AKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVV 92
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSN-LSEGEIAHFEASLI 717
L L E++ + + P F ++LS ++ + +
Sbjct: 93 LVGDVFKKLQKEAEFQR--------QEWIRKQGPHFV---EYLSWEVTGECNVLLKCKVA 141
Query: 718 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
+ + + + + + I + G+ L I +D G+Y + G+ +
Sbjct: 142 NI-KKETHIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDK 198
Query: 778 ISVNL 782
+ L
Sbjct: 199 SRLKL 203
Score = 100 bits (249), Expect = 5e-24
Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 45/205 (21%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD--FGI 553
F V ++ E F + + + V + +N K++ G +Y+ D GI
Sbjct: 3 DPFTKSELAV-EILEKGQVRFWMQAEKL-SGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL------------- 600
+ + + +E+ G Y + + ++ + L L E++
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 601 --------------------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 634
+ W+ + +++ ++ GI L I
Sbjct: 121 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEF 178
Query: 635 YEENSGVYECRATNKYGSDVTKASL 659
++++G+YE + G D ++ L
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKL 203
Score = 68.8 bits (168), Expect = 2e-13
Identities = 14/93 (15%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
+ P F+ +S ++ + + ++ + + W+ + +++ ++ GI
Sbjct: 116 QGPHFVEYLSW--EVTGECNVLLKCKVAN-IKKETHIVWYKDEREISVDEKHDF--KDGI 170
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTKASL 586
L I ++++G+YE + G D ++ L
Sbjct: 171 CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
Score = 68.4 bits (167), Expect = 3e-13
Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 29/156 (18%)
Query: 1 MVKATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPE 60
+ + K + ++ + V +V L + + Q
Sbjct: 77 TFQLQDGKATNHST-----------------------VVLVGDVFKKLQKEAEFQRQEWI 113
Query: 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTAD 120
P F+ L E + L+ +V I W + + + + +
Sbjct: 114 RKQG-PHFVEYLSWEVTGEC--NVLLKCKVA-NIKKETHIVWYKDEREISVDEKHDFKD- 168
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
G TL +TE +D GIY + G+ + +
Sbjct: 169 -GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
Score = 58.0 bits (140), Expect = 1e-09
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 4/114 (3%)
Query: 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGM 749
FT + + E F V +++N K I +++ G+
Sbjct: 3 DPFTKSELAVE-ILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEVPQ 803
+ + + + ED G YT + + +V L V+ Q + + E +
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR 114
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 116 bits (292), Expect = 1e-29
Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 20/213 (9%)
Query: 196 DSEDGRPPQFTSEFQ---HLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI 252
+S + R P +T+ + L + F G+ T+ +L NGK + HRI
Sbjct: 9 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCP--AGGNPMPTMRWLKNGKEFKQEHRI 66
Query: 253 RTVHAF-GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIK 311
L + D G YTC N++G + +L+ V++S+ +P
Sbjct: 67 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPA 126
Query: 312 SLEGLKDGDSAHFECTLTPVNDPELKVEWFHN-----------GKPIFHKNRVKMVSDFG 360
+ G F C +D + ++W + G P + ++
Sbjct: 127 NAS-TVVGGDVEFVC--KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
V+ + V D+GEY+C+ N G+ A
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAW 216
Score = 91.9 bits (228), Expect = 4e-21
Identities = 47/263 (17%), Positives = 76/263 (28%), Gaps = 54/263 (20%)
Query: 57 SGPEETFAKPVFIVPLKPEFKL---GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS 113
S P + K E +L A + +P + W+ NGK +
Sbjct: 7 SENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEH 64
Query: 114 RFKT-TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPK 172
R +L + V D+G YTC N G I + ++ER++H
Sbjct: 65 RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS------INHTYHLDVVERSRHR- 117
Query: 173 GEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE----ASLI 228
P + S G F +
Sbjct: 118 -----------------------------PILQAGLPANAS-TVVGGDVEFVCKVYSDAQ 147
Query: 229 PV-----GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 283
P + ++ +G P + +++ VL + D G Y C+ +N
Sbjct: 148 PHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNY 207
Query: 284 WGQAEISVNLECVDKSKGQPPKF 306
GQA S L + K Q P
Sbjct: 208 IGQANQSAWLTVLPKQ--QAPGR 228
Score = 90.7 bits (225), Expect = 1e-20
Identities = 38/200 (19%), Positives = 59/200 (29%), Gaps = 34/200 (17%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFH-DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P + W NGK+ HR + L + + G Y C N+YGS L
Sbjct: 49 PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 108
Query: 660 KCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE----AS 715
V + RP + S G F +
Sbjct: 109 D----------------------VVERSRHRPILQAGLPANAS-TVVGGDVEFVCKVYSD 145
Query: 716 LIPV-----GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770
P + ++ +G P + +++ VL + D G Y C+ +
Sbjct: 146 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS 205
Query: 771 NKWGQAEISVNLECVVWSPS 790
N GQA S L V+
Sbjct: 206 NYIGQANQSAWLT-VLPKQQ 224
Score = 80.3 bits (198), Expect = 4e-17
Identities = 36/303 (11%), Positives = 76/303 (25%), Gaps = 91/303 (30%)
Query: 289 ISVNLECVDKSKGQPPKFTSHIK---SLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNG 344
++ + + + + P +T+ K L + ++ F C P +P + W NG
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRC---PAGGNPMPTMRWLKNG 57
Query: 345 KPIFHKNRVKM-VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVY 403
K ++R+ + + V D G Y C N+YG + V
Sbjct: 58 KEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD------V- 110
Query: 404 LDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP 463
++ + G F
Sbjct: 111 -------------------------VERSRHRPILQAGLPANAS-TVVGGDVEFV----- 139
Query: 464 VTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPV 523
C+ + + +K +
Sbjct: 140 -------CK--------------VYSDAQPH----------IQWIKHVEK---------- 158
Query: 524 TDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 583
++ +G ++ + +L + E ++G Y C+ +N G
Sbjct: 159 ----NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214
Query: 584 ASL 586
A L
Sbjct: 215 AWL 217
Score = 78.0 bits (192), Expect = 3e-16
Identities = 38/215 (17%), Positives = 68/215 (31%), Gaps = 44/215 (20%)
Query: 486 VAQAAPVAEAPKFITQISDVTQL---KEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPH 541
V++ + AP + +L + F P +P + W NGK+
Sbjct: 6 VSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRC---PAGGNPMPTMRWLKNGKEFKQ 62
Query: 542 GHRYRTFH-DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL--ILES 598
HR + L + + G Y C N+YGS L V ++ IL++
Sbjct: 63 EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQA 122
Query: 599 QLPE-----------------------VEWFYNGKKLPHG-----------HRYRTFHDF 624
LP ++W + +K ++ +
Sbjct: 123 GLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS 182
Query: 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+L + E ++G Y C+ +N G A L
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
Score = 46.0 bits (109), Expect = 2e-05
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 19/127 (14%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN-----------GKP 108
E + +P+ L + +V +D I+WI + G P
Sbjct: 112 ERSRHRPILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLP 169
Query: 109 LELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERT 168
+ L L V + D G Y C+ N G+ S + +++ +
Sbjct: 170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL------TVLPKQ 223
Query: 169 QHPKGEE 175
Q P E+
Sbjct: 224 QAPGREK 230
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 114 bits (286), Expect = 5e-29
Identities = 41/198 (20%), Positives = 71/198 (35%), Gaps = 13/198 (6%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGM 260
PP+FT + G +A F GD + + GK + +
Sbjct: 6 PPRFTRTPVDQT-GVSGGVASFICQA--TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 261 VVLEILGTKI-EDTGVYTCRATNKWGQAEISVNL--ECVDKSKGQPPKFTSHIKSLEGLK 317
VL I + D +Y C A+N G+ +S L D+ P + ++
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKV-VE 121
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN---RVKMVSDFGFVVMDIAYVQSHDS 374
+A C +P+ ++ WF + P+ N R+K + + I + D
Sbjct: 122 RTRTATMLC--AASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 375 GEYVCRAWNKYGEDFTRA 392
G+Y C A N G ++
Sbjct: 180 GKYECVATNSAGTRYSAP 197
Score = 96.0 bits (239), Expect = 1e-22
Identities = 44/202 (21%), Positives = 67/202 (33%), Gaps = 38/202 (18%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRT-FH 549
P+F D T G A F + T DP + W GKK+ + F
Sbjct: 3 GETPPRFTRTPVDQT-GVSGGVASFICQ---ATGDPRPKIVWNKKGKKVSNQRFEVIEFD 58
Query: 550 DFGIVILDIL-YCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI---------LESQ 599
D +L I + +YEC A+N G L + + + + +
Sbjct: 59 DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLK 118
Query: 600 ------------------LPEVEWFYNGKKL---PHGHRYRTFHDFGIVILDILYCYEEN 638
PE+ WF + + + R + I L I E +
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178
Query: 639 SGVYECRATNKYGSDVT-KASL 659
G YEC ATN G+ + A+L
Sbjct: 179 QGKYECVATNSAGTRYSAPANL 200
Score = 93.3 bits (232), Expect = 9e-22
Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 28/182 (15%)
Query: 601 PEVEWFYNGKKLPHGHRYRT-FHDFGIVILDIL-YCYEENSGVYECRATNKYGSDVTKAS 658
P++ W GKK+ + F D +L I + +YEC A+N G
Sbjct: 36 PKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTR 95
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 718
L V D P Q + A +
Sbjct: 96 LT-VL-------------------REDQIPRGFPTIDMGPQLKV-VERTRTATMLCA--A 132
Query: 719 VGDQTMTVEFLYNGKPIEAS---HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775
G+ + + + P++ S RI+ + + + L+I ++ D G Y C ATN G
Sbjct: 133 SGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGT 192
Query: 776 AE 777
Sbjct: 193 RY 194
Score = 89.1 bits (221), Expect = 3e-20
Identities = 48/252 (19%), Positives = 72/252 (28%), Gaps = 51/252 (20%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT-ADFG 122
P F Q DP KI W GK + D
Sbjct: 5 TPPRFTRTPVD-QTGVSGGVASFICQAT--GDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 123 FVTLDLTEVYD-RDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
L + + RD+ IY C A N GE ST + +++ Q P+G
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRL------TVLREDQIPRG-------- 107
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
P Q + A + G+ + +
Sbjct: 108 --------------------FPTIDMGPQLKV-VERTRTATMLCA--ASGNPDPEITWFK 144
Query: 242 NGKPIEAS---HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVNLECVD 297
+ P++ S RI+ + + + L+I ++ D G Y C ATN G NL V
Sbjct: 145 DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLY-VR 203
Query: 298 KSKGQPPKFTSH 309
H
Sbjct: 204 ----GTKHHHHH 211
Score = 79.1 bits (195), Expect = 8e-17
Identities = 53/287 (18%), Positives = 78/287 (27%), Gaps = 95/287 (33%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH-KNRVKMVSDFGF 361
PP+FT G+ G A F C T DP K+ W GK + + + V D
Sbjct: 6 PPRFTRTPVDQTGV-SGGVASFICQAT--GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 362 VVMDIAYVQS-HDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELEN 420
V+ I +++ D Y C A N GE + V + P
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT------VLREDQIPRG--------- 107
Query: 421 AQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPS 480
P ++ ++A
Sbjct: 108 ---------------FPTIDMGPQLKV-VERTRTATMLCA-------------------- 131
Query: 481 QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP 540
A P E +T K+ PV +
Sbjct: 132 ------ASGNPDPE----------ITWFKDFL---------PVDTSN------------- 153
Query: 541 HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT-KASL 586
+ R + I L I E + G YEC ATN G+ + A+L
Sbjct: 154 NNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANL 200
Score = 61.8 bits (150), Expect = 7e-11
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 7/114 (6%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGM 749
PP+FT + G +A F GD + + GK + +
Sbjct: 6 PPRFTRTPVDQT-GVSGGVASFICQA--TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 750 VVLEILGTKI-EDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEVP 802
VL I + D +Y C A+N G+ +S L V Q + ++
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT--VLREDQIPRGFPTIDMG 114
Score = 59.4 bits (144), Expect = 4e-10
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS---RF 115
+ P + + + + + + +P+ +I W + P++ + R
Sbjct: 102 DQIPRGFPTIDMGPQLK-VVERTRTATMLCAA--SGNPDPEITWFKDFLPVDTSNNNGRI 158
Query: 116 KTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
K L + + + DQG Y C A N AG +++
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAP 197
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 110 bits (277), Expect = 7e-27
Identities = 39/351 (11%), Positives = 86/351 (24%), Gaps = 64/351 (18%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
+ + A + + N+ I W + + + +
Sbjct: 4 DKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 63
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
L D G Y C N + + +E + Q L
Sbjct: 64 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISA------KFVENEPNLCYNAQAIFKQKLPV 117
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE----ASLIPVGDQTMTVEFLY 241
++ +++
Sbjct: 118 --------------------------------AGDGGLVCPYMEFFKNENNELPKLQWYK 145
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS----VNLECVD 297
+ KP+ + + L ++ + G YTC A+ + + + ++
Sbjct: 146 DCKPLLLDNIHFSGV---KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLE 202
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI------FHKN 351
++K P S + G C +T W NG I ++
Sbjct: 203 ENKPTRPVIVSPANETMEVDLGSQIQLICNVT--GQLSDIAYWKWNGSVIDEDDPVLGED 260
Query: 352 RVKMVSDFGF------VVMDIAYVQSHD-SGEYVCRAWNKYGEDFTRATIK 395
+ + V++I+ ++S + C A N +G D +
Sbjct: 261 YYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 311
Score = 105 bits (264), Expect = 4e-25
Identities = 53/393 (13%), Positives = 98/393 (24%), Gaps = 89/393 (22%)
Query: 201 RPPQFTS-EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
+ E + + S EI L P + T+ + + S +
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQH 60
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
L + K+ED+G Y C N I ++ + V+ + + + L
Sbjct: 61 KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEP--NLCYNAQAIFKQKLPVA 118
Query: 320 DSAHFEC----TLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSG 375
C N+ K++W+ + KP+ N + + V G
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLI---VMNVAEKHRG 175
Query: 376 EYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAE 435
Y C A Y + + R+ E +
Sbjct: 176 NYTCHASYTYLG--------------------KQYPITRVIEF--------ITLEENKPT 207
Query: 436 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEA 495
P ++ ++ ++ G C +
Sbjct: 208 RPVIVSPANETMEVDLGSQIQLI------------CNVTGQLSDI--------------- 240
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
G + + D V+ Y + P R T I +
Sbjct: 241 ---------AYWKWNGS---------VIDEDDPVLGEDYYSVENPANKRRST----LITV 278
Query: 556 LDILYCYEEN-SGVYECRATNKYGSDVTKASLK 587
L+I + C A N +G D L
Sbjct: 279 LNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 311
Score = 99.8 bits (248), Expect = 5e-23
Identities = 47/338 (13%), Positives = 90/338 (26%), Gaps = 78/338 (23%)
Query: 494 EAPKFIT-QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR---TFH 549
EA K + + + L P + + W+ + K P H
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQH 60
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK---------------------- 587
+ + E+SG Y C N K S K
Sbjct: 61 KEKLWFVPAK---VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPV 117
Query: 588 -------CVSKTNLILE-SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENS 639
C E ++LP+++W+ + K L + + + ++++++ E++
Sbjct: 118 AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNV---AEKHR 174
Query: 640 GVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQ 699
G Y C A+ Y + + P S
Sbjct: 175 GNYTCHASYTYLGKQYPITRVIEFI------------------TLEENKPTRPVIVSPAN 216
Query: 700 HLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTV------------H 745
+ G + G + + +NG I+ +
Sbjct: 217 ETMEVDLGSQIQLICNVT----GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRR 272
Query: 746 AFGMVVLEILGTKIED-TGVYTCRATNKWGQAEISVNL 782
+ + VL I + +TC A N G + L
Sbjct: 273 STLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
Score = 71.7 bits (175), Expect = 1e-13
Identities = 23/196 (11%), Positives = 48/196 (24%), Gaps = 37/196 (18%)
Query: 598 SQLPEVEWFYNGKKLPHGHRYR---TFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 654
+ W+ + K P H + + E+SG Y C N
Sbjct: 33 EHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK---VEDSGHYYCVVRNSSYCLR 89
Query: 655 TKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE- 713
K S K V + ++ L
Sbjct: 90 IKISAKFVENE------------------------PNLCYNAQAIFKQKLPVAGDGGLVC 125
Query: 714 ---ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770
++ +++ + KP+ + + L ++ + G YTC A+
Sbjct: 126 PYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV---KDRLIVMNVAEKHRGNYTCHAS 182
Query: 771 NKWGQAEISVNLECVV 786
+ + +
Sbjct: 183 YTYLGKQYPITRVIEF 198
Score = 68.6 bits (167), Expect = 1e-12
Identities = 24/222 (10%), Positives = 55/222 (24%), Gaps = 53/222 (23%)
Query: 486 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFE----ARLTPVTDPDLVVEWFYNGKKLPH 541
+ P + Q +L + ++W+ + K L
Sbjct: 96 FVENEP---NLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL 152
Query: 542 GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT--------- 592
+ + + ++++++ E++ G Y C A+ Y + T
Sbjct: 153 DNIHFSGVKDRLIVMNV---AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRP 209
Query: 593 ----------------NLILE-----SQLPEVEWFYNGKKL---------PHGHRYRTFH 622
+ L W +NG + + +
Sbjct: 210 VIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPAN 269
Query: 623 DFGIVILDILY----CYEENSGVYECRATNKYGSDVTKASLK 660
++ +L + C A N +G D L
Sbjct: 270 KRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 311
Score = 67.4 bits (164), Expect = 3e-12
Identities = 37/251 (14%), Positives = 64/251 (25%), Gaps = 60/251 (23%)
Query: 64 AKPVFIVPLKPEF--KLGEAQPLHLE----AQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
+P + F KL A L + +N+ K++W + KPL L + +
Sbjct: 99 NEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFS 158
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGL 177
L + V ++ +G YTC A T
Sbjct: 159 GVK---DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI---------------- 199
Query: 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTM 235
+ P S + G + G +
Sbjct: 200 ----------------TLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT----GQLSD 239
Query: 236 TVEFLYNGKPIEASHRIRTV------------HAFGMVVLEILGTKIED-TGVYTCRATN 282
+ +NG I+ + + + VL I + +TC A N
Sbjct: 240 IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKN 299
Query: 283 KWGQAEISVNL 293
G + L
Sbjct: 300 THGIDAAYIQL 310
Score = 54.7 bits (131), Expect = 5e-08
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 690 RPPQFTS-EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
+ E + + S EI L P + T+ + + S +
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQH 60
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L + K+ED+G Y C N I ++ +
Sbjct: 61 KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK 95
Score = 45.5 bits (107), Expect = 4e-05
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF---- 115
E +PV + P ++ + L V + W +NG ++
Sbjct: 203 ENKPTRPVIVSPANETMEVDLGSQIQLICNVT--GQLSDIAYWKWNGSVIDEDDPVLGED 260
Query: 116 --------KTTADFGFVTLDLTEVYDRD-QGIYTCRAWNLAGETFTS 153
L+++E+ R + +TC A N G
Sbjct: 261 YYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY 307
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 107 bits (270), Expect = 7e-27
Identities = 45/200 (22%), Positives = 77/200 (38%), Gaps = 19/200 (9%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF- 258
PP+ + Q+ + G +A F A GD ++ + NGK + + TV
Sbjct: 6 PPEIIRKPQNQG-VRVGGVASFYCAAR----GDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60
Query: 259 -GMVVLEILGTKI-EDTGVYTCRATNKWGQ---AEISVNLECVDKSKGQPPKFTSHIKSL 313
G+ +L I + D Y C A N G A+ ++ + DK+ P T +
Sbjct: 61 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTR 120
Query: 314 EGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHD 373
++ G + C + +P + W N + N + D I + D
Sbjct: 121 V-IEVGHTVLMTCK--AIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQ---IENSREED 174
Query: 374 SGEYVCRAWNKYGEDFTRAT 393
G+Y C A N G + ++AT
Sbjct: 175 QGKYECVAENSMGTEHSKAT 194
Score = 91.0 bits (226), Expect = 6e-21
Identities = 44/200 (22%), Positives = 68/200 (34%), Gaps = 41/200 (20%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLP--HGHRYRTF 548
A P+ I + + ++ G A F DP + W NGKK+
Sbjct: 3 GAHPPEIIRKPQNQG-VRVGGVASFYCA---ARGDPPPSIVWRKNGKKVSGTQSRYTVLE 58
Query: 549 HDFGIVILDIL-YCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQ------- 599
GI IL I + YEC A N G V+ A+L + + +
Sbjct: 59 QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLT-IYEGDKTPAGFPVITQGP 117
Query: 600 ---------------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 638
P + W N K+ + + D + I + EE+
Sbjct: 118 GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSR---EED 174
Query: 639 SGVYECRATNKYGSDVTKAS 658
G YEC A N G++ +KA+
Sbjct: 175 QGKYECVAENSMGTEHSKAT 194
Score = 86.4 bits (214), Expect = 2e-19
Identities = 42/181 (23%), Positives = 63/181 (34%), Gaps = 30/181 (16%)
Query: 601 PEVEWFYNGKKLP--HGHRYRTFHDFGIVILDIL-YCYEENSGVYECRATNKYGSDVT-K 656
P + W NGKK+ GI IL I + YEC A N G V+
Sbjct: 36 PSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSAD 95
Query: 657 ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASL 716
A+L + E + PAG P T + G
Sbjct: 96 ATL------------TIYEGDKTPAG--------FPVITQGPGTRV-IEVGHTVLMTCK- 133
Query: 717 IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
+G+ T + ++ N ++ S+ ++ G L+I ++ ED G Y C A N G
Sbjct: 134 -AIGNPTPNIYWIKNQTKVDMSNPRYSLKD-G--FLQIENSREEDQGKYECVAENSMGTE 189
Query: 777 E 777
Sbjct: 190 H 190
Score = 82.9 bits (205), Expect = 4e-18
Identities = 44/253 (17%), Positives = 67/253 (26%), Gaps = 49/253 (19%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL--GSRFKT 117
E P I + + DP I W NGK +
Sbjct: 1 ETGAHPPEIIRKPQN-QGVRVGGVASFYCAAR--GDPPPSIVWRKNGKKVSGTQSRYTVL 57
Query: 118 TADFGFVTLDLTEVY-DRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEG 176
G L + V RD Y C A N G+ + ++ E + P G
Sbjct: 58 EQPGGISILRIEPVRAGRDDAPYECVAENGVGDA-----VSADATLTIYEGDKTPAG--- 109
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT 236
P T + G +G+ T
Sbjct: 110 -------------------------FPVITQGPGTRV-IEVGHTVLMTCK--AIGNPTPN 141
Query: 237 VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
+ ++ N ++ S+ ++ G L+I ++ ED G Y C A N G V
Sbjct: 142 IYWIKNQTKVDMSNPRYSLKD-G--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYV 198
Query: 297 DKSKGQPPKFTSH 309
T H
Sbjct: 199 K----VRRVGTKH 207
Score = 54.0 bits (130), Expect = 3e-08
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
+ PV + + + + +P I WI N +++ + +
Sbjct: 104 DKTPAGFPVITQGPG-TRVIEVGHTVLMTCKA--IGNPTPNIYWIKNQTKVDMSNPRYSL 160
Query: 119 ADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
D G L + + DQG Y C A N G + T
Sbjct: 161 KD-G--FLQIENSREEDQGKYECVAENSMGTEHSKAT 194
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 106 bits (266), Expect = 2e-26
Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 14/193 (7%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 260
+ P T+ + + + E+A F + + + N I+ ++ G
Sbjct: 6 KAPVITTPLETV-DALVEEVATFMCA--VESYPQPEISWTRNKILIKLFDTRYSIRENGQ 62
Query: 261 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGD 320
+ L IL + D G+Y C A N G A S V PK T +++ + +G
Sbjct: 63 L-LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK----MKPKITRPPINVK-IIEGL 116
Query: 321 SAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCR 380
A C T + +P+ V W + +R+ ++ I VQ D+G+Y C
Sbjct: 117 KAVLPC--TTMGNPKPSVSWIKGDSALRENSRIAVLESGSLR---IHNVQKEDAGQYRCV 171
Query: 381 AWNKYGEDFTRAT 393
A N G +++
Sbjct: 172 AKNSLGTAYSKLV 184
Score = 88.6 bits (220), Expect = 2e-20
Identities = 38/191 (19%), Positives = 60/191 (31%), Gaps = 30/191 (15%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRT 547
A + +AP T + V + A F V P + W N + +
Sbjct: 1 AEKLPKAPVITTPLETVD-ALVEEVATFMCA---VESYPQPEISWTRNKILIKLFDTRYS 56
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV----------SKTNLILE 597
+ G + L IL + + G+Y C A N G V V +I
Sbjct: 57 IRENGQL-LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEG 115
Query: 598 SQ-----------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRA 646
+ P V W L R + I ++ +E++G Y C A
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQ---KEDAGQYRCVA 172
Query: 647 TNKYGSDVTKA 657
N G+ +K
Sbjct: 173 KNSLGTAYSKL 183
Score = 80.9 bits (200), Expect = 1e-17
Identities = 48/232 (20%), Positives = 71/232 (30%), Gaps = 56/232 (24%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVE--PKNDPNLKIEWIFNGKPLEL-GSRFK 116
E+ PV PL+ + VE P+ P I W N ++L +R+
Sbjct: 2 EKLPKAPVITTPLET-VDALVEEVATFMCAVESYPQ--PE--ISWTRNKILIKLFDTRYS 56
Query: 117 TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEG 176
+ L + V D D GIY C A N G S
Sbjct: 57 IRENGQ--LLTILSVEDSDDGIYCCTANNGVGGAVESC----------GALQVK------ 98
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT 236
P+ T ++ + EG A + +G+ +
Sbjct: 99 ------------------------MKPKITRPPINVK-IIEGLKAVLPCT--TMGNPKPS 131
Query: 237 VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288
V ++ + + RI V G L I + ED G Y C A N G A
Sbjct: 132 VSWIKGDSALRENSRIA-VLESGS--LRIHNVQKEDAGQYRCVAKNSLGTAY 180
Score = 79.8 bits (197), Expect = 3e-17
Identities = 38/177 (21%), Positives = 59/177 (33%), Gaps = 33/177 (18%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
PE+ W N + + + G + L IL + + G+Y C A N G V
Sbjct: 37 PEISWTRNKILIKLFDTRYSIRENGQL-LTILSVEDSDDGIYCCTANNGVGGAVESCGAL 95
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
V P+ T ++ + EG A + +G
Sbjct: 96 QVK--------------------------MKPKITRPPINVK-IIEGLKAVLPCT--TMG 126
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
+ +V ++ + + RI V G L I + ED G Y C A N G A
Sbjct: 127 NPKPSVSWIKGDSALRENSRIA-VLESGS--LRIHNVQKEDAGQYRCVAKNSLGTAY 180
Score = 60.5 bits (147), Expect = 1e-10
Identities = 33/190 (17%), Positives = 52/190 (27%), Gaps = 42/190 (22%)
Query: 430 AAPVAEAPKFITQISDVTQLKEGQSAHFE----------------ARLTPVTDPDLVCE- 472
A + +AP T + V + A F L + D
Sbjct: 1 AEKLPKAPVITTPLETVD-ALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE 59
Query: 473 -----LFSNFFPS------------QGQQPVAQAA-PVAEAPKFITQISDVTQLKEGQSA 514
+ S G + A V PK +V + EG A
Sbjct: 60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVK-IIEGLKA 118
Query: 515 HFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 574
+ +P V W L R + I ++ +E++G Y C A
Sbjct: 119 VLPCT--TMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQ---KEDAGQYRCVAK 173
Query: 575 NKYGSDVTKA 584
N G+ +K
Sbjct: 174 NSLGTAYSKL 183
Score = 56.7 bits (137), Expect = 2e-09
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
+ P T+ + + + E+A F + + + N I+ ++ G
Sbjct: 6 KAPVITTPLETV-DALVEEVATFMCA--VESYPQPEISWTRNKILIKLFDTRYSIRENGQ 62
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+ L IL + D G+Y C A N G A S
Sbjct: 63 L-LTILSVEDSDDGIYCCTANNGVGGAVESC 92
Score = 56.3 bits (136), Expect = 4e-09
Identities = 22/93 (23%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
KP P K+ E L +P + WI L SR G
Sbjct: 98 KMKPKITRPPI-NVKIIEGLKAVLP--CTTMGNPKPSVSWIKGDSALRENSRIAVLES-G 153
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
+L + V D G Y C A N G ++
Sbjct: 154 --SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLV 184
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 104 bits (261), Expect = 7e-26
Identities = 45/198 (22%), Positives = 70/198 (35%), Gaps = 18/198 (9%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAF 258
F +GE A S V +LY+ + + R + A
Sbjct: 2 MLTFREVVSPQE-FKQGEDAEVVCRVS----SSPAPAVSWLYHNEEVTTISDNRFAMLAN 56
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLE-GLK 317
L+IL D G+Y C + ++ + PP + KS +
Sbjct: 57 N--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV---PPAISMPQKSFNATAE 111
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
G+ F C PE + WF NGK I + + + + + + D G Y
Sbjct: 112 RGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPY 167
Query: 378 VCRAWNKYGEDFTRATIK 395
VCRA NK GED +A ++
Sbjct: 168 VCRATNKAGEDEKQAFLQ 185
Score = 94.8 bits (236), Expect = 1e-22
Identities = 39/193 (20%), Positives = 68/193 (35%), Gaps = 36/193 (18%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLP--HGHRYRTFHDF 551
F +S K+G+ A R V+ P V W Y+ +++ +R+ +
Sbjct: 2 MLTFREVVSPQE-FKQGEDAEVVCR---VSSSPAPAVSWLYHNEEVTTISDNRFAMLANN 57
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV------------SKTNLILESQ 599
+ IL+I + + G+Y C + ++ + + S +
Sbjct: 58 NLQILNIN---KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE 114
Query: 600 ------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
P + WF NGK + +Y L + + G Y CRAT
Sbjct: 115 EMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRAT 172
Query: 648 NKYGSDVTKASLK 660
NK G D +A L+
Sbjct: 173 NKAGEDEKQAFLQ 185
Score = 92.5 bits (230), Expect = 1e-21
Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 37/187 (19%)
Query: 601 PEVEWFYNGKKLP--HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
P V W Y+ +++ +R+ + + IL+I + + G+Y C + ++
Sbjct: 32 PAVSWLYHNEEVTTISDNRFAMLANNNLQILNIN---KSDEGIYRCEGRVEARGEIDFRD 88
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASL 716
+ +I+ PP + Q N + GE F
Sbjct: 89 II------VIVNV-------------------PPAISMP-QKSFNATAERGEEMTFSCR- 121
Query: 717 IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
G + + NGK IE + + + L + D G Y CRATNK G+
Sbjct: 122 -ASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGED 178
Query: 777 EISVNLE 783
E L+
Sbjct: 179 EKQAFLQ 185
Score = 87.5 bits (217), Expect = 6e-20
Identities = 48/236 (20%), Positives = 75/236 (31%), Gaps = 56/236 (23%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTAD 120
+ F + P EFK GE + +V + P + W+++ + + S RF A+
Sbjct: 1 SMLTFREVVSPQEFKQGE--DAEVVCRVS--SSPAPAVSWLYHNEEVTTISDNRFAMLAN 56
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKI 180
L + + D+GIY C A I + +
Sbjct: 57 -N--NLQILNINKSDEGIYRCEGRVEARGEIDFRDI--------------------IVIV 93
Query: 181 QDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVE 238
PP + Q N + GE F G +
Sbjct: 94 NV-------------------PPAISMP-QKSFNATAERGEEMTFSCR--ASGSPEPAIS 131
Query: 239 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ NGK IE + + + L + D G Y CRATNK G+ E L+
Sbjct: 132 WFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185
Score = 60.2 bits (146), Expect = 2e-10
Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 492 VAEAPKFI-TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
V P Q S + G+ F R P+ + WF NGK + +Y
Sbjct: 93 VNVPPAISMPQKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGS 150
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L + + G Y CRATNK G D +A L+
Sbjct: 151 NTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185
Score = 52.5 bits (126), Expect = 7e-08
Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 10/102 (9%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAF 747
F +GE A S V +LY+ + + R + A
Sbjct: 2 MLTFREVVSPQE-FKQGEDAEVVCRVS----SSPAPAVSWLYHNEEVTTISDNRFAMLAN 56
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
L+IL D G+Y C + ++ +V P
Sbjct: 57 N--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP 96
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 107 bits (268), Expect = 8e-26
Identities = 66/345 (19%), Positives = 101/345 (29%), Gaps = 68/345 (19%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWI-FNGKPLELG-SRFKTTADFGF 123
V IVP + E +GE++ + + + I W NG+ L R +
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDA---KDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 124 V-TLDLTEVYDRDQGIYTCRAWNLAGETFTST---TIYCSTKESLIERTQHPKGEEGLEK 179
TL + D GIY C G +T I+
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF---------------------- 98
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTV 237
+ F + EGE A T+
Sbjct: 99 ---------------------QKLMFKNAPTPQE-FKEGEDAVIVCDVV----SSLPPTI 132
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
+ + G+ + +R L+I G K D G Y C +++ +
Sbjct: 133 IWKHKGRDVILKKDVR-FIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
Query: 298 KSKGQPPKFTSHIKSLE-GLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356
PP + + G S C PE + W +G+PI ++
Sbjct: 192 NV---PPTVQARQSIVNATANLGQSVTLVCDAD--GFPEPTMSWTKDGEPIENEEEDDEK 246
Query: 357 SDFGFVVMD--IAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
F + I V +D EYVC A NK GE +K F K
Sbjct: 247 HIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 107 bits (268), Expect = 9e-26
Identities = 55/319 (17%), Positives = 101/319 (31%), Gaps = 65/319 (20%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWF-YNGKKL-PHGHRYRTFHDFGI 553
+ S + G+S F + D + WF NG+KL P+ R +
Sbjct: 3 LQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 554 V-ILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQ------------ 599
L I +++G+Y+C T + G+ ++K K
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 600 --------LPEVEWFYNGKKLP--HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
P + W + G+ + R+ + + I I + + G Y C
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIK---KTDEGTYRCEGRIL 177
Query: 650 YGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLS-NLSEGE 708
++ ++ +I+ PP + ++ + G+
Sbjct: 178 ARGEINFKDIQ------VIVNV-------------------PPTVQARQSIVNATANLGQ 212
Query: 709 IAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGV 764
A G T+ + +G+PIE H F L I D
Sbjct: 213 SVTLVCDAD----GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAE 268
Query: 765 YTCRATNKWGQAEISVNLE 783
Y C A NK G+ + S++L+
Sbjct: 269 YVCIAENKAGEQDASIHLK 287
Score = 94.9 bits (236), Expect = 1e-21
Identities = 39/203 (19%), Positives = 66/203 (32%), Gaps = 23/203 (11%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYNGKPIEAS-HRIRTVHAF 258
R Q +S GE F + + + F NG+ + + RI V
Sbjct: 1 RVLQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWND 58
Query: 259 GMV-VLEILGTKIEDTGVYTCRATNKWG-----QAEISVNLECVDKSKGQPPKFTSHIKS 312
L I I+D G+Y C T + G + + Q F +
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF---------QKLMFKNAPTP 109
Query: 313 LEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH 372
E K+G+ A C + + + W H G+ + K V+ + + I ++
Sbjct: 110 QE-FKEGEDAVIVCDVV--SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-IRGIKKT 165
Query: 373 DSGEYVCRAWNKYGEDFTRATIK 395
D G Y C + I+
Sbjct: 166 DEGTYRCEGRILARGEINFKDIQ 188
Score = 83.8 bits (207), Expect = 8e-18
Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 36/197 (18%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLP--HGHRYRTF 548
+ + F + KEG+ A V + W + G+ + R+
Sbjct: 97 IFQKLMFKNAPTPQE-FKEGEDAVIVCD---VVSSLPPTIIWKHKGRDVILKKDVRFIVL 152
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK-------------------CV 589
+ + I I + + G Y C ++ ++
Sbjct: 153 SNNYLQIRGIK---KTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATAN 209
Query: 590 SKTNLILE-----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVI--LDILYCYEENSGVY 642
++ L P + W +G+ + + H F L I + + Y
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY 269
Query: 643 ECRATNKYGSDVTKASL 659
C A NK G L
Sbjct: 270 VCIAENKAGEQDASIHL 286
Score = 74.9 bits (184), Expect = 9e-15
Identities = 49/270 (18%), Positives = 75/270 (27%), Gaps = 64/270 (23%)
Query: 41 VQEVEHALAGKYQ---RQPSGPEET-------FAKPVFIVPLKP-EFKLGEAQPLHLEAQ 89
+ AG Y+ G + F K +F P EFK GE +
Sbjct: 66 IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGE--DAVIVCD 123
Query: 90 VEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
V + I W G+ + L + L + + D+G Y C LA
Sbjct: 124 VV--SSLPPTIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRILARG 180
Query: 150 TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEF 209
I PP +
Sbjct: 181 EINFKDIQVIVNV---------------------------------------PPTVQARQ 201
Query: 210 QHLS-NLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV--VLE 264
++ + G+ A G T+ + +G+PIE H F L
Sbjct: 202 SIVNATANLGQSVTLVCDAD----GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELT 257
Query: 265 ILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
I D Y C A NK G+ + S++L+
Sbjct: 258 IRNVDKNDEAEYVCIAENKAGEQDASIHLK 287
Score = 74.5 bits (183), Expect = 9e-15
Identities = 49/331 (14%), Positives = 84/331 (25%), Gaps = 91/331 (27%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPI-FHKNRVKMVSDF 359
+ + E + G+S F C + + + WF NG+ + ++ R+ +V +
Sbjct: 1 RVLQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWND 58
Query: 360 GFV-VMDIAYVQSHDSGEYVCRAWNKYGEDFTR-ATIKCFGKGGVYLDSLQPESLARIRE 417
+ I D+G Y C + G +K
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK---------------------- 96
Query: 418 LENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE------------------- 458
+ + F + KEG+ A
Sbjct: 97 ---------------IFQKLMFKNAPTPQE-FKEGEDAVIVCDVVSSLPPTIIWKHKGRD 140
Query: 459 ------ARLTPVTDPDL-------------VCELFSNFFPSQGQQPVAQAAPVAEAPKFI 499
R +++ L CE + Q V P
Sbjct: 141 VILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG-RILARGEINFKDIQVI-VNVPPTVQ 198
Query: 500 T--QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI-- 555
I + T GQS P+ + W +G+ + + H F
Sbjct: 199 ARQSIVNAT-ANLGQSVTLVCDAD--GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE 255
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASL 586
L I + + Y C A NK G L
Sbjct: 256 LTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
Score = 74.5 bits (183), Expect = 1e-14
Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 46/230 (20%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWF-YNGKKL-PHGHRYRTFHDFGIV-ILDILYC 634
G C + + ++ WF NG+KL P+ R + L I
Sbjct: 17 GESKF---FLCQVAGDA----KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 635 YEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQ 693
+++G+Y+C T + G+ ++K + +
Sbjct: 70 NIDDAGIYKCVVTAEDGTQSEATVNVK----------------------IF-----QKLM 102
Query: 694 FTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 751
F + EGE A T+ + + G+ + +R
Sbjct: 103 FKNAPTPQE-FKEGEDAVIVCDVV----SSLPPTIIWKHKGRDVILKKDVR-FIVLSNNY 156
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEV 801
L+I G K D G Y C +++ +V P + S+
Sbjct: 157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNA 206
Score = 46.4 bits (110), Expect = 2e-05
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYNGKPIEAS-HRIRTVHAF 747
R Q +S GE F + + + F NG+ + + RI V
Sbjct: 1 RVLQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWND 58
Query: 748 GMV-VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
L I I+D G+Y C T + G + ++
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQS-EATVNVKIFQK 100
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 105 bits (263), Expect = 8e-26
Identities = 45/208 (21%), Positives = 74/208 (35%), Gaps = 31/208 (14%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEA----SHRIRT 254
+ P+ L + + E A G T+E+ +G+P+ SHR++
Sbjct: 8 QSPRIIEHPTDL-VVKKNEPATLNCKVE----GKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 255 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-----AEISVNLECVDKSKGQPPKFTSH 309
+ G K +D G Y C A N+ GQ A + + F
Sbjct: 63 KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI--------AVLRDDFRVE 114
Query: 310 IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD---- 365
K + G++A EC P PE + W +G P+ + + ++D
Sbjct: 115 PKDTR-VAKGETALLECG-PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNL 172
Query: 366 -IAYVQSHDSGEYVCRAWNKYGEDFTRA 392
I+ V+ D G Y C A N G +
Sbjct: 173 LISNVEPIDEGNYKCIAQNLVGTRESSY 200
Score = 81.4 bits (201), Expect = 1e-17
Identities = 40/204 (19%), Positives = 72/204 (35%), Gaps = 37/204 (18%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKL----PH 541
A A ++P+ I +D+ +K+ + A + V P+ +EWF +G+ +
Sbjct: 1 APLAGQYQSPRIIEHPTDLV-VKKNEPATLNCK---VEGKPEPTIEWFKDGEPVSTNEKK 56
Query: 542 GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVS---------K 591
HR + + E++ G Y C A N+ G V+ ASL+ K
Sbjct: 57 SHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK 116
Query: 592 TNLILESQ-------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILD-----ILY 633
+ + + P + W +G L + I+D I
Sbjct: 117 DTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISN 176
Query: 634 CYEENSGVYECRATNKYGSDVTKA 657
+ G Y+C A N G+ +
Sbjct: 177 VEPIDEGNYKCIAQNLVGTRESSY 200
Score = 79.1 bits (195), Expect = 8e-17
Identities = 48/258 (18%), Positives = 80/258 (31%), Gaps = 56/258 (21%)
Query: 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
+ P I + + + +P L +VE P IEW +G+P+ + F
Sbjct: 6 QYQSPRIIEHPT-DLVVKKNEPATLNCKVE--GKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 122 ----GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGL 177
F + ++D G Y C A N G+ +
Sbjct: 63 KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASL-------------------- 102
Query: 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
+I L F E + +++GE A E P G T+
Sbjct: 103 -QIAVL------------------RDDFRVEPKDTR-VAKGETALLECG-PPKGIPEPTL 141
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVV-----LEILGTKIEDTGVYTCRATNKWGQAE-ISV 291
++ +G P++ + + + + L I + D G Y C A N G E
Sbjct: 142 IWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYA 201
Query: 292 NLECVDKSKGQPPKFTSH 309
L V + K H
Sbjct: 202 KLI-V-QVKAAAHHHHHH 217
Score = 74.1 bits (182), Expect = 4e-15
Identities = 46/287 (16%), Positives = 82/287 (28%), Gaps = 98/287 (34%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI----FHKNRVKMVS 357
Q P+ H L K + A C + PE +EWF +G+P+ +RV+
Sbjct: 8 QSPRIIEHPTDLVVKK-NEPATLNCKVE--GKPEPTIEWFKDGEPVSTNEKKSHRVQFKD 64
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRE 417
F + + D GEY C A N+ G+ +R A ++
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRH--------------------ASLQ- 103
Query: 418 LENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNF 477
+A F + D + +G++A E C
Sbjct: 104 ---------IA-----VLRDDFRVEPKDTR-VAKGETALLE------------CG----- 131
Query: 478 FPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGK 537
+ P + +K+G ++
Sbjct: 132 --------PPKGIPEPT----------LIWIKDGVPLDDLKAMSFGASS----------- 162
Query: 538 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
R R ++I ++ + G Y+C A N G+ +
Sbjct: 163 ------RVRIVDGGNLLISNVE---PIDEGNYKCIAQNLVGTRESSY 200
Score = 72.6 bits (178), Expect = 2e-14
Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 38/187 (20%)
Query: 601 PEVEWFYNGKKL----PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT- 655
P +EWF +G+ + HR + + E++ G Y C A N+ G V+
Sbjct: 39 PTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSR 98
Query: 656 KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEAS 715
ASL+ F E + +++GE A E
Sbjct: 99 HASLQIAVL--------------------------RDDFRVEPKDTR-VAKGETALLECG 131
Query: 716 LIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV-----LEILGTKIEDTGVYTCRAT 770
P G T+ ++ +G P++ + + + + L I + D G Y C A
Sbjct: 132 -PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQ 190
Query: 771 NKWGQAE 777
N G E
Sbjct: 191 NLVGTRE 197
Score = 56.0 bits (135), Expect = 6e-09
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEA----SHRIRT 743
+ P+ L + + E A G T+E+ +G+P+ SHR++
Sbjct: 8 QSPRIIEHPTDL-VVKKNEPATLNCKVE----GKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
+ G K +D G Y C A N+ GQA
Sbjct: 63 KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 104 bits (261), Expect = 8e-26
Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 23/203 (11%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVE-FLYNGKPIEAS-HRIRTVH 256
R Q +S GE F + + + F NG+ + + RI V
Sbjct: 1 RVLQVDIVPSQGE-ISVGESKFFLCQVAGDA---KDKDISWFSPNGEKLSPNQQRISVVW 56
Query: 257 AFGMV-VLEILGTKIEDTGVYTCRATNKWG-QAEISVNLECVDKSKGQPPKFTSHIKSLE 314
L I I+D G+Y C T + G Q+E +VN++ Q F + E
Sbjct: 57 NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF-----QKLMFKNAPTPQE 111
Query: 315 GLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKMVSDFGFVVMDIAYVQSH 372
K+G+ A C V+ + W H G+ + K R ++S+ + I ++
Sbjct: 112 -FKEGEDAVIVC--DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-N--YLQIRGIKKT 165
Query: 373 DSGEYVCRAWNKYGEDFTRATIK 395
D G Y C + I+
Sbjct: 166 DEGTYRCEGRILARGEINFKDIQ 188
Score = 75.2 bits (185), Expect = 1e-15
Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 37/191 (19%)
Query: 601 PEVEWFY-NGKKLP--HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT-K 656
++ WF NG+KL ++D L I +++G+Y+C T + G+
Sbjct: 33 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT 92
Query: 657 ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASL 716
++K I + F + EGE A
Sbjct: 93 VNVK-------IFQ--------------------KLMFKNAPTPQE-FKEGEDAVIVCD- 123
Query: 717 IPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775
V T+ + + G+ + +R V + L+I G K D G Y C
Sbjct: 124 -VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGRILARG 180
Query: 776 AEISVNLECVV 786
+++ +V
Sbjct: 181 EINFKDIQVIV 191
Score = 74.1 bits (182), Expect = 2e-15
Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 31/191 (16%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLP--HGHRYRTFHDFG 552
+ S + G+S F + D + WF NG+KL ++D
Sbjct: 3 LQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQ------------ 599
L I +++G+Y+C T + G+ ++K K
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 600 --------LPEVEWFYNGKKLPH--GHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
P + W + G+ + R+ + + I I + + G Y C
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIK---KTDEGTYRCEGRIL 177
Query: 650 YGSDVTKASLK 660
++ ++
Sbjct: 178 ARGEINFKDIQ 188
Score = 67.2 bits (164), Expect = 6e-13
Identities = 41/232 (17%), Positives = 67/232 (28%), Gaps = 52/232 (22%)
Query: 67 VFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGS-RFKTTADFGFV 124
V IVP + E +GE++ + + K+ + I W NG+ L R +
Sbjct: 5 VDIVPSQGEISVGESKFFLCQVAGDAKD-KD--ISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 125 -TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
TL + D GIY C G + T+ +
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQ-SEATVNVKIFQ--------------------- 99
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
F + EGE A V T+ + + G
Sbjct: 100 ------------------KLMFKNAPTPQE-FKEGEDAVIVCD--VVSSLPPTIIWKHKG 138
Query: 244 KPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ + +R V + L+I G K D G Y C +++
Sbjct: 139 RDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
Score = 62.9 bits (153), Expect = 2e-11
Identities = 33/290 (11%), Positives = 70/290 (24%), Gaps = 106/290 (36%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIF-HKNRVKMVSDF 359
+ + E + G+S F C + + + WF NG+ + ++ R+ +V +
Sbjct: 1 RVLQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWND 58
Query: 360 GFV-VMDIAYVQSHDSGEYVCRAWNKYGEDFTR-ATIKCFGKGGVYLDSLQPESLARIRE 417
+ I D+G Y C + G +K
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK---------------------- 96
Query: 418 LENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNF 477
+ + F + KEG+ A C+
Sbjct: 97 ---------------IFQKLMFKNAPTPQE-FKEGEDAVIV------------CD----- 123
Query: 478 FPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGK 537
++ + +G+ V
Sbjct: 124 ---------VVSSLPPT----------IIWKHKGR---------DVI------------- 142
Query: 538 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L R+ + + I I + + G Y C ++ ++
Sbjct: 143 -LKKDVRFIVLSNNYLQIRGIK---KTDEGTYRCEGRILARGEINFKDIQ 188
Score = 56.8 bits (137), Expect = 3e-09
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 63 FAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTA 119
F K +F P EFK GE + V + I W G+ + L RF +
Sbjct: 98 FQKLMFKNAPTPQEFKEGE--DAVIVCDV--VSSLPPTIIWKHKGRDVILKKDVRFIVLS 153
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+ L + + D+G Y C LA I
Sbjct: 154 N-N--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
Score = 55.6 bits (134), Expect = 6e-09
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 10/105 (9%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVE-FLYNGKPIEAS-HRIRTVH 745
R Q +S GE F + + + F NG+ + + RI V
Sbjct: 1 RVLQVDIVPSQGE-ISVGESKFFLCQVAGDA---KDKDISWFSPNGEKLSPNQQRISVVW 56
Query: 746 AFGMV-VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
L I I+D G+Y C T + G + + ++
Sbjct: 57 NDDDSSTLTIYNANIDDAGIYKCVVTAEDGT-QSEATVNVKIFQK 100
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 106 bits (266), Expect = 1e-25
Identities = 53/337 (15%), Positives = 86/337 (25%), Gaps = 64/337 (18%)
Query: 64 AKPVF-IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
A P I P PE + + + L +EW P +
Sbjct: 1 ADPAPVIEPSGPELVVEPGETVTLRCVSNGS------VEWDGPISPYWTLDPESPGS--- 51
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
TL ++ G Y C T+ +Y
Sbjct: 52 --TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLY------------------------- 84
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
V D P + + EG+ A LI +V +
Sbjct: 85 -----------VKD-----PAHSWNLLAQEVTVVEGQEAVLPC-LITDPALKDSVSLMRE 127
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE-CVDKSKG 301
G + + I K+ D+ Y C+ G+ S + V++
Sbjct: 128 GGRQVLRKTVYFFSPWR--GFIIRKAKVLDSNTYVCKTMVN-GRESTSTGIWLKVNRVHP 184
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+PP+ L G++A C+ T N G D +
Sbjct: 185 EPPQIKLEPSKLV-RIRGEAAQIVCSAT--NAEVGFNVILKRGDTKLEIPLNSDFQDNYY 241
Query: 362 VVMD---IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + V D+G Y C A N G +
Sbjct: 242 KKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQ 278
Score = 84.6 bits (209), Expect = 5e-18
Identities = 45/317 (14%), Positives = 80/317 (25%), Gaps = 70/317 (22%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
AP ++ ++ G++ VEW +
Sbjct: 4 APVIEPSGPELV-VEPGETVTLRCV---SNGS---VEWDGPISPYW-----TLDPESPGS 51
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASL----------------KCVSKTNLILE- 597
L +N+G Y C + T L V +L
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPC 111
Query: 598 -----SQLPEVEWFYNGKK-LPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
+ V G + + Y G +I +S Y C+
Sbjct: 112 LITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAK---VLDSNTYVCKTMVNGR 168
Query: 652 SDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 711
+ V++ + PPQ E L GE A
Sbjct: 169 ESTSTGIWLKVNRVHPE----------------------PPQIKLEPSKLV-RIRGEAAQ 205
Query: 712 F--EASLIPVGDQTMTVEFLYNGK---PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766
A+ + L G I + + + + L + +D G+Y+
Sbjct: 206 IVCSAT----NAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYS 261
Query: 767 CRATNKWGQAEISVNLE 783
C A+N G ++N +
Sbjct: 262 CVASNDVGTRTATMNFQ 278
Score = 71.5 bits (175), Expect = 1e-13
Identities = 28/205 (13%), Positives = 57/205 (27%), Gaps = 47/205 (22%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL--VVEWFYNGKK-LPHGHRYRTF 548
V + ++ + EGQ A +TDP L V G + + Y
Sbjct: 85 VKDPAHSWNLLAQEVTVVEGQEAVLPCL---ITDPALKDSVSLMREGGRQVLRKTVYFFS 141
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTK------------------------- 583
G +I +S Y C+ +
Sbjct: 142 PWRGFIIRKAK---VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVR 198
Query: 584 -----ASLKCVSKTNLILESQLPEVEWFYNGKK---LPHGHRYRTFHDFGIVILDILYCY 635
A + C +++ G +P ++ + + L +
Sbjct: 199 IRGEAAQIVCS-----ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVD 253
Query: 636 EENSGVYECRATNKYGSDVTKASLK 660
+++G+Y C A+N G+ + +
Sbjct: 254 FQDAGIYSCVASNDVGTRTATMNFQ 278
Score = 66.1 bits (161), Expect = 7e-12
Identities = 39/251 (15%), Positives = 64/251 (25%), Gaps = 53/251 (21%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
L E + E Q L + + + G L + +
Sbjct: 87 DPAHSWNLLAQEVTVVEGQEAVLPCLI-TDPALKDSVSLMREGGRQVLRKTVYFFSPWR- 144
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+ + D Y C+ G TST I+ E
Sbjct: 145 -GFIIRKAKVLDSNTYVCKTMV-NGRESTSTGIWLKVNRVHPE----------------- 185
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLY 241
PPQ E L GE A A+ + L
Sbjct: 186 ------------------PPQIKLEPSKLV-RIRGEAAQIVCSAT----NAEVGFNVILK 222
Query: 242 NGK---PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
G I + + + + L + +D G+Y+C A+N G ++N + V+
Sbjct: 223 RGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES 282
Query: 299 SKGQPPKFTSH 309
H
Sbjct: 283 ----HHHHHHH 289
Score = 63.0 bits (153), Expect = 7e-11
Identities = 42/330 (12%), Positives = 75/330 (22%), Gaps = 100/330 (30%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P L ++ G++ C N VEW P + + S
Sbjct: 4 APVIEPSGPELV-VEPGETVTLRCV---SNGS---VEWDGPISPYWTLDPESPGS----- 51
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
+ ++G Y C T +
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLY--------------------------- 84
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL------------- 469
V + ++ + EGQ A +TDP L
Sbjct: 85 ----------VKDPAHSWNLLAQEVTVVEGQEAVLPCL---ITDPALKDSVSLMREGGRQ 131
Query: 470 ----------------------------VCELFSNFFPSQGQQPVAQAAPVAEAPKFITQ 501
VC+ N S + V P I
Sbjct: 132 VLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKL 191
Query: 502 ISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKK---LPHGHRYRTFHDFGIVILD 557
G++A T G +P ++ + + L
Sbjct: 192 EPSKLVRIRGEAAQIVCS---ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALS 248
Query: 558 ILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ +++G+Y C A+N G+ + +
Sbjct: 249 LNAVDFQDAGIYSCVASNDVGTRTATMNFQ 278
Score = 60.0 bits (145), Expect = 7e-10
Identities = 28/185 (15%), Positives = 44/185 (23%), Gaps = 36/185 (19%)
Query: 602 EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 661
VEW + L +N+G Y C + T L
Sbjct: 31 SVEWDGPISPYW-----TLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLY- 84
Query: 662 VSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD 721
V D P + + EG+ A LI
Sbjct: 85 ---------------------VKD-----PAHSWNLLAQEVTVVEGQEAVLPC-LITDPA 117
Query: 722 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
+V + G + + I K+ D+ Y C+ G+ S
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYFFSPWR--GFIIRKAKVLDSNTYVCKTMVN-GRESTSTG 174
Query: 782 LECVV 786
+ V
Sbjct: 175 IWLKV 179
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 105 bits (263), Expect = 1e-25
Identities = 44/216 (20%), Positives = 72/216 (33%), Gaps = 21/216 (9%)
Query: 195 PDSEDGRPPQFTS-EFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR 251
D P +T E L+ F G+ T ++ +L NG+ HR
Sbjct: 4 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP--AAGNPTPSISWLKNGREFRGEHR 61
Query: 252 IRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHI 310
I + L + D G YTC NK+G + L+ +++S +P
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 121
Query: 311 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----NGKPIFHKNRVKMVSDFGFVVMD- 365
+ G F C +D + ++W NG + + ++
Sbjct: 122 ANQT-AVLGSDVEFHC--KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESV 178
Query: 366 -------IAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+A V D GEY+CRA N G +
Sbjct: 179 EADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
Score = 84.2 bits (208), Expect = 2e-18
Identities = 39/207 (18%), Positives = 61/207 (29%), Gaps = 42/207 (20%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFG----IVILDILYCYEENSGVYECRATNKYGSDVTK 656
P + W NG++ HR +V+ ++ + G Y C NK+GS
Sbjct: 45 PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVV---PSDRGNYTCVVENKFGSIRQT 101
Query: 657 ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--- 713
+L V + RP + + G F
Sbjct: 102 YTLD----------------------VLERSPHRPILQAGLPANQT-AVLGSDVEFHCKV 138
Query: 714 -ASLIPV-----GDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYT 766
+ P + + +G P + + V L + D G Y
Sbjct: 139 YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYL 198
Query: 767 CRATNKWGQAEISVNLECVVWSPSQTK 793
CRATN G AE + L V P +
Sbjct: 199 CRATNFIGVAEKAFWLS--VHGPRAAE 223
Score = 81.9 bits (202), Expect = 2e-17
Identities = 44/245 (17%), Positives = 68/245 (27%), Gaps = 53/245 (21%)
Query: 64 AKPVFIVPLKPEFKL---GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-TTA 119
P + P + + KL A + +P I W+ NG+ R
Sbjct: 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAA--GNPTPSISWLKNGREFRGEHRIGGIKL 67
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
+L + V D+G YTC N G I + ++ER+ H
Sbjct: 68 RHQQWSLVMESVVPSDRGNYTCVVENKFGS------IRQTYTLDVLERSPHR-------- 113
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE----ASLIPV----- 230
P + + G F + P
Sbjct: 114 ----------------------PILQAGLPANQT-AVLGSDVEFHCKVYSDAQPHIQWLK 150
Query: 231 GDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 289
+ + +G P + + V L + D G Y CRATN G AE
Sbjct: 151 HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEK 210
Query: 290 SVNLE 294
+ L
Sbjct: 211 AFWLS 215
Score = 71.9 bits (176), Expect = 3e-14
Identities = 36/222 (16%), Positives = 66/222 (29%), Gaps = 50/222 (22%)
Query: 480 SQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKK 538
+ V AP P+ + + + + F P +P + W NG++
Sbjct: 1 ADPDTGVDTGAPYWTRPERM-DKKLLA-VPAANTVRFRC---PAAGNPTPSISWLKNGRE 55
Query: 539 LPHGHRYRTFHDFG----IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL 594
HR +V+ ++ + G Y C NK+GS +L + ++
Sbjct: 56 FRGEHRIGGIKLRHQQWSLVMESVV---PSDRGNYTCVVENKFGSIRQTYTLDVLERSPH 112
Query: 595 -------ILESQ------------------LPEVEWFYNGKKLPH------------GHR 617
+ +Q P ++W + +
Sbjct: 113 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKS 172
Query: 618 YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+ + V L + E + G Y CRATN G L
Sbjct: 173 WISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
Score = 70.7 bits (173), Expect = 9e-14
Identities = 45/290 (15%), Positives = 79/290 (27%), Gaps = 90/290 (31%)
Query: 302 QPPKFTSHIKSLEGL---KDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVS 357
P +T + + L ++ F C P +P + W NG+ ++R+ +
Sbjct: 10 GAPYWTRPERMDKKLLAVPAANTVRFRC---PAAGNPTPSISWLKNGREFRGEHRIGGIK 66
Query: 358 -DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIR 416
+ + V D G Y C NK+G T+
Sbjct: 67 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD--------------------- 105
Query: 417 ELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSN 476
V + +P ++ T G F C+++S+
Sbjct: 106 ----------VLERSPHR-PILQAGLPANQT-AVLGSDVEFH------------CKVYSD 141
Query: 477 FFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG 536
P + LK + +++ P P + V
Sbjct: 142 AQPH------------------------IQWLKHVEVNG--SKVGPDGTPYVTVL----- 170
Query: 537 KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ + V L + E + G Y CRATN G L
Sbjct: 171 ------KSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
Score = 58.0 bits (140), Expect = 2e-09
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 684 PDSEDGRPPQFTS-EFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR 740
D P +T E L+ F G+ T ++ +L NG+ HR
Sbjct: 4 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP--AAGNPTPSISWLKNGREFRGEHR 61
Query: 741 IRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
I + L + D G YTC NK+G + L+
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105
Score = 42.2 bits (99), Expect = 3e-04
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKP----------- 108
E + +P+ L + +V +D I+W+ + +
Sbjct: 108 ERSPHRPILQAGLPANQTAVLGSDVEFHCKV--YSDAQPHIQWLKHVEVNGSKVGPDGTP 165
Query: 109 -LELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153
+ + + + + V L L V +RD G Y CRA N G +
Sbjct: 166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKA 211
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 105 bits (264), Expect = 3e-25
Identities = 56/344 (16%), Positives = 91/344 (26%), Gaps = 64/344 (18%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+ PV I P PE + + L +EW P +++
Sbjct: 3 SIPV-IEPSVPELVVKPGATVTLRCVGNGS------VEWDGPPSPHWTLYSDGSSS---- 51
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
L ++ G Y C + +Y
Sbjct: 52 -ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY-------------------------- 84
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYN 242
V D P + + + E + A L+ V
Sbjct: 85 ----------VKD-----PARPWNVLAQEVVVFEDQDALLPC-LLTDPVLEAGVSLVRVR 128
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG-QAEISVNLECVDKSKG 301
G+P+ G I K + Y C A IS+ L+ V K
Sbjct: 129 GRPLMRHTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLK-VQKVIP 184
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
PP T L G++A C+ + V+ V HN + + ++
Sbjct: 185 GPPALTLVPAELV-RIRGEAAQIVCSASSVDVNF-DVFLQHNNTKLAIPQQSDFHNNRYQ 242
Query: 362 VVMD--IAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVY 403
V+ + V +G Y C A N G+ T + G
Sbjct: 243 KVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNS 286
Score = 85.8 bits (212), Expect = 2e-18
Identities = 48/315 (15%), Positives = 74/315 (23%), Gaps = 68/315 (21%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
P + ++ +K G + VEW +G PH Y +
Sbjct: 5 PVIEPSVPELV-VKPGATVTLRCV---GNGS---VEW--DGPPSPHWTLYSDGSSSILST 55
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL--------------- 600
+ +N+G Y C L
Sbjct: 56 NNAT---FQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCL 112
Query: 601 -------PEVEWFY-NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
V G+ L Y G I + S Y+C A
Sbjct: 113 LTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKF---IQSQDYQCSALMGGRK 169
Query: 653 DVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 712
++ + V K PP T L GE A
Sbjct: 170 VMSISIRLKVQKVIPG----------------------PPALTLVPAELV-RIRGEAAQI 206
Query: 713 --EASLIPVGDQTMTVEFLYNGK--PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768
AS + V V +N I ++ L + + G Y+C
Sbjct: 207 VCSASSVDVN---FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCV 263
Query: 769 ATNKWGQAEISVNLE 783
A+N G+ S+
Sbjct: 264 ASNVQGKHSTSMFFR 278
Score = 67.3 bits (164), Expect = 2e-12
Identities = 39/251 (15%), Positives = 64/251 (25%), Gaps = 54/251 (21%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWI-FNGKPLELGSRFKTTADFG 122
L E + E Q L + + + G+PL + + + G
Sbjct: 87 DPARPWNVLAQEVVVFEDQDALLPCLL-TDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG 145
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
F + Y C A G S +I ++ +
Sbjct: 146 FT---IHRAKFIQSQDYQCSALM-GGRKVMSISIRLKVQKVIPG---------------- 185
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFL 240
PP T L GE A AS + V V
Sbjct: 186 -------------------PPALTLVPAELV-RIRGEAAQIVCSASSVDVN---FDVFLQ 222
Query: 241 YNGK--PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
+N I ++ L + + G Y+C A+N G+ S+ V+
Sbjct: 223 HNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE- 281
Query: 299 SKGQPPKFTSH 309
+ H
Sbjct: 282 ----SAGNSHH 288
Score = 65.8 bits (160), Expect = 9e-12
Identities = 41/332 (12%), Positives = 74/332 (22%), Gaps = 100/332 (30%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360
G P + L +K G + C VEW P + S
Sbjct: 2 GSIPVIEPSVPELV-VKPGATVTLRCVGNG------SVEWDGPPSPHWTLYSDGSSS--- 51
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELEN 420
++ ++G Y C +
Sbjct: 52 --ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY------------------------- 84
Query: 421 AQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL----------- 469
V + + ++ + E Q A +TDP L
Sbjct: 85 ------------VKDPARPWNVLAQEVVVFEDQDALLPCL---LTDPVLEAGVSLVRVRG 129
Query: 470 ------------------------------VCELFSNFFPSQGQQPVAQAAPVAEAPKFI 499
C + V P +
Sbjct: 130 RPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPAL 189
Query: 500 TQISDVTQLKEGQSAHFEARLTPVTDPDL--VVEWFYNGKKLPHGHRYR--TFHDFGIVI 555
T + G++A + D+ V +N KL + ++
Sbjct: 190 TLVPAELVRIRGEAAQIVCS---ASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLT 246
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L++ +++G Y C A+N G T +
Sbjct: 247 LNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 106 bits (266), Expect = 1e-24
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 10/160 (6%)
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
F + RI G L I K+ D+G Y C A ++ G + S+ L+
Sbjct: 40 GFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY 99
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKM 355
PKF S+ +G+ + C + ++P + W + + KN +K
Sbjct: 100 -----APKFISNQTIYY-SWEGNPINISCDVK--SNPPASIHWRRDKLVLPAKNTTNLKT 151
Query: 356 VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
S ++++IA +D G Y C A N G F +
Sbjct: 152 YSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILA 191
Score = 90.2 bits (224), Expect = 2e-19
Identities = 35/192 (18%), Positives = 53/192 (27%), Gaps = 39/192 (20%)
Query: 601 PEVEWFYNGKKLP-------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 653
PE+ W R G L I +SG Y+C A ++ G
Sbjct: 30 PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGH 89
Query: 654 VTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE 713
L I P+F S EG +
Sbjct: 90 QKSMYLD-------IEY--------------------APKFISNQTIYY-SWEGNPINIS 121
Query: 714 ASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771
+ + ++ + + + A ++T ++LEI T D G Y C ATN
Sbjct: 122 CDV--KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 772 KWGQAEISVNLE 783
G L
Sbjct: 180 HIGTRFQEYILA 191
Score = 88.7 bits (220), Expect = 7e-19
Identities = 33/191 (17%), Positives = 52/191 (27%), Gaps = 32/191 (16%)
Query: 499 ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP-------HGHRYRTFHDF 551
I Q+ + T E +P + W R
Sbjct: 4 IIQLKNET-TYENGQVTLVCD--AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ------------ 599
G L I +SG Y+C A ++ G L I
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINI 120
Query: 600 --------LPEVEWFYNGKKLP--HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
+ W + LP + +T+ +IL+I + + G Y C ATN
Sbjct: 121 SCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
Query: 650 YGSDVTKASLK 660
G+ + L
Sbjct: 181 IGTRFQEYILA 191
Score = 84.9 bits (210), Expect = 1e-17
Identities = 57/349 (16%), Positives = 95/349 (27%), Gaps = 98/349 (28%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS-------RFKT 117
+P I L + + +P +I W R +
Sbjct: 1 QPHIIQLKNETTYENGQVTLV----CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 56
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGL 177
G +L + +V D G Y C A + G S +
Sbjct: 57 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL--------------------- 95
Query: 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
I+ P+F S EG + + + ++
Sbjct: 96 -DIEY-------------------APKFISNQTIYY-SWEGNPINISCDV--KSNPPASI 132
Query: 238 EFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 295
+ + + A ++T ++LEI T D G Y C ATN G L
Sbjct: 133 HWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL 192
Query: 296 VDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEW----FHNGKPIFH-- 349
D P G+K + ++ KV + H G PI H
Sbjct: 193 AD--VPSSP---------YGVK----------IIELSQTTAKVSFNKPDSHGGVPIHHYQ 231
Query: 350 -------KNRVKMVSDFG----FVVMDIAYVQSHDSGEYVCRAWNKYGE 387
K+V G V+ + ++ + + E A N G+
Sbjct: 232 VDVKEVASEIWKIVRSHGVQTMVVLNN---LEPNTTYEIRVAAVNGKGQ 277
Score = 67.5 bits (165), Expect = 5e-12
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP--HGHRYRTFH 549
+ APKFI+ + EG + + ++P + W + LP + +T+
Sbjct: 97 IEYAPKFISNQTIYY-SWEGNPINISCDVK--SNPPASIHWRRDKLVLPAKNTTNLKTYS 153
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+IL+I + + G Y C ATN G+ + L
Sbjct: 154 TGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILA 191
Score = 59.8 bits (145), Expect = 1e-09
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTAD 120
P FI G P+++ V K++P I W + L + KT +
Sbjct: 99 YAPKFISNQTIYYSWEGN--PINISCDV--KSNPPASIHWRRDKLVLPAKNTTNLKTYST 154
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ L++ D D G Y C A N G F +
Sbjct: 155 GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190
Score = 46.7 bits (111), Expect = 2e-05
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 727 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786
F + RI G L I K+ D+G Y C A ++ G + S+ L+ +
Sbjct: 40 GFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD--I 97
Query: 787 WSP 789
Sbjct: 98 EYA 100
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 101 bits (254), Expect = 1e-24
Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 39/206 (18%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 258
R + T + + + G+ A+ G + ++ K I +
Sbjct: 17 RGSKITVNPESKA-VLAGQFVKLCCRAT----GHPFVQYQWFKMNKEIPNGNTSE----- 66
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQ-----AEISVN------LECVDKSKGQPPKFT 307
L ++D G Y CR N + +++ V VD +
Sbjct: 67 ----LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122
Query: 308 SHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIA 367
S + L G + +C V P +WF N P+ H+ + + +
Sbjct: 123 VEPTSQK-LMPGSTLVLQCV--AVGSPIPHYQWFKNELPLTHETKKLYM---------VP 170
Query: 368 YVQSHDSGEYVCRAWNKYGEDFTRAT 393
YV G Y C +N ++
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSKKV 196
Score = 83.8 bits (207), Expect = 2e-18
Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 35/194 (18%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK-ASL 659
+ +WF K++P+G+ L + +++G Y CR N + + ++ + L
Sbjct: 48 VQYQWFKMNKEIPNGNTSE---------LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQL 98
Query: 660 KCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV 719
+ ++ D Q E L G + V
Sbjct: 99 ------------DVCDIPESFQRSVDGVSESKLQICVEPTSQK-LMPGSTLVLQCV--AV 143
Query: 720 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
G ++ N P+ + + + +E G Y C N + S
Sbjct: 144 GSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQD-S 193
Query: 780 VNLECVVWSPSQTK 793
+E ++ +
Sbjct: 194 KKVEIIIDELNNLG 207
Score = 78.8 bits (194), Expect = 1e-16
Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 59/230 (25%)
Query: 480 SQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKK 538
S + V K + GQ R T P + +WF K+
Sbjct: 3 SSHHHHHHSSGLVPRGSKITVNPESKA-VLAGQFVKLCCR---ATGHPFVQYQWFKMNKE 58
Query: 539 LPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK--------------- 583
+P+G+ L + +++G Y CR N + + ++
Sbjct: 59 IPNGNTSE---------LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQR 109
Query: 584 ----------------ASLKCVSKTNLILE-----SQLPEVEWFYNGKKLPHGHRYRTFH 622
S K + + L+L+ S +P +WF N L H +
Sbjct: 110 SVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---- 165
Query: 623 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ 672
+ + Y E+ G Y C N S +K + + N +
Sbjct: 166 -----LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPD 210
Score = 78.4 bits (193), Expect = 1e-16
Identities = 39/248 (15%), Positives = 67/248 (27%), Gaps = 60/248 (24%)
Query: 69 IVPLKPEFKLG-------EAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
+VP + + Q + L + P ++ +W K + G+
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCRAT--GHPFVQYQWFKMNKEIPNGNTS------ 65
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
L V+ +D G Y CR N F+ + L +
Sbjct: 66 ---ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS-------QL--------------DVC 101
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
D+ ES +R GV +S Q E L G + VG ++
Sbjct: 102 DIPESFQRSVDGVSES----KLQICVEPTSQK-LMPGSTLVLQCV--AVGSPIPHYQWFK 154
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
N P+ + + + +E G Y C N + +
Sbjct: 155 NELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII----- 200
Query: 302 QPPKFTSH 309
H
Sbjct: 201 DELNNLGH 208
Score = 51.8 bits (124), Expect = 2e-07
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 12/109 (11%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
+ + + L G + + V P +WF N L H +
Sbjct: 118 KLQICVEPTSQK-LMPGSTLVLQCV--AVGSPIPHYQWFKNELPLTHETKK--------- 165
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEV 603
+ + Y E+ G Y C N S +K + + N + E
Sbjct: 166 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQ 214
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 100 bits (251), Expect = 2e-24
Identities = 42/202 (20%), Positives = 64/202 (31%), Gaps = 23/202 (11%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
P + Q N + GE F G + + NGK IE + + +
Sbjct: 2 MPAISMP-QKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGSNT 58
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
L + D G Y CRATNK G+ E L+ V P E +
Sbjct: 59 --ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ-V----FVQPHIIQ--LKNETTYEN 109
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPI-------FHKNRVKMVSDFGFVVMDIAYVQSH 372
C +P ++ W R+++ G + I V+
Sbjct: 110 GQVTLVCDAE--GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 167
Query: 373 DSGEYVCRAWNKYGEDFTRATI 394
DSG Y C A ++ G +
Sbjct: 168 DSGRYDCEAASRIGGHQKSMYL 189
Score = 87.2 bits (216), Expect = 7e-20
Identities = 41/194 (21%), Positives = 64/194 (32%), Gaps = 35/194 (18%)
Query: 495 APKFIT--QISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDF 551
P + + T + G+ F R + P+ + WF NGK + +Y
Sbjct: 2 MPAISMPQKSFNAT-AERGEEMTFSCR---ASGSPEPAISWFRNGKLIEENEKYILKGSN 57
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI-------LESQ----- 599
L + + G Y CRATNK G D +A L+ + ++I E+
Sbjct: 58 TE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLV 115
Query: 600 -------LPEVEWFYNGKKLP-------HGHRYRTFHDFGIVILDILYCYEENSGVYECR 645
+PE+ W R G L I +SG Y+C
Sbjct: 116 CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE 175
Query: 646 ATNKYGSDVTKASL 659
A ++ G L
Sbjct: 176 AASRIGGHQKSMYL 189
Score = 85.6 bits (212), Expect = 3e-19
Identities = 38/239 (15%), Positives = 63/239 (26%), Gaps = 57/239 (23%)
Query: 64 AKPVFIVPLKPE-FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+ P +P K + + + P I W NGK +E ++
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRAS--GSPEPAISWFRNGKLIEENEKYILKGSNT 58
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
L + + + D G Y CRA N AGE + ++
Sbjct: 59 --ELTVRNIINSDGGPYVCRATNKAGEDEKQAFL----------------------QVF- 93
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
P E G+ + +
Sbjct: 94 ------------------VQPHIIQLKN--ETTYENGQVTLVCD--AEGEPIPEITWKRA 131
Query: 243 GKPIEASH-------RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ RI G L I K+ D+G Y C A ++ G + S+ L+
Sbjct: 132 VDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 190
Score = 84.9 bits (210), Expect = 5e-19
Identities = 37/190 (19%), Positives = 56/190 (29%), Gaps = 40/190 (21%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P + WF NGK + +Y L + + G Y CRATNK G D +A L+
Sbjct: 34 PAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 91
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
+ P E G
Sbjct: 92 -------VFV--------------------QPHIIQLKN--ETTYENGQVTLVCD--AEG 120
Query: 721 DQTMTVEFLYNGKPIEASH-------RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 773
+ + + + RI G L I K+ D+G Y C A ++
Sbjct: 121 EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Query: 774 GQAEISVNLE 783
G + S+ L+
Sbjct: 181 GGHQKSMYLD 190
Score = 81.0 bits (200), Expect = 1e-17
Identities = 52/286 (18%), Positives = 78/286 (27%), Gaps = 100/286 (34%)
Query: 303 PPKFTSHIKSLE-GLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFG 360
P + KS + G+ F C + PE + WF NGK I + +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSC---RASGSPEPAISWFRNGKLIEENEKYILKGSNT 58
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELEN 420
+ + + + D G YVCRA NK GED +A ++
Sbjct: 59 --ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ------------------------- 91
Query: 421 AQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPS 480
V P I ++ T E C+
Sbjct: 92 ------------VFVQPHIIQLKNETT--YENGQVTLV------------CD-------- 117
Query: 481 QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP 540
A+ P+ P+ +T + F G K
Sbjct: 118 ------AEGEPI---PE-------ITWKRAVDGFTFT-----------------EGDKSL 144
Query: 541 HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
G R G L I +SG Y+C A ++ G L
Sbjct: 145 DG-RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 189
Score = 59.8 bits (145), Expect = 2e-10
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
P + Q N + GE F G + + NGK IE + + +
Sbjct: 2 MPAISMP-QKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGSNT 58
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
L + D G Y CRATNK G+ E L
Sbjct: 59 --ELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 90
Score = 50.6 bits (121), Expect = 3e-07
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 11/101 (10%)
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-------GSRF 115
F +P I + L E +P +I W R
Sbjct: 93 FVQPHIIQLKNETTYENG--QVTLVCDAE--GEPIPEITWKRAVDGFTFTEGDKSLDGRI 148
Query: 116 KTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ G +L + +V D G Y C A + G S +
Sbjct: 149 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 189
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 99 bits (249), Expect = 3e-24
Identities = 35/200 (17%), Positives = 65/200 (32%), Gaps = 21/200 (10%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P+ + + + + +L M + NG + A+ + +
Sbjct: 3 EPRIVTSEEVII-RDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM----- 56
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
I + ED+G Y C + + + +E V P T H +S +G
Sbjct: 57 EYRINKPRAEDSGEYHCVY-HFVSAPKANATIE-VK----AAPDITGHKRSEN-KNEGQD 109
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPIFH-----KNRVKMVSDFGFVVMDIAYVQS-HDSG 375
A C P + W +F R +++ + ++I +Q D G
Sbjct: 110 AMMYCKSV--GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167
Query: 376 EYVCRAWNKYGEDFTRATIK 395
EY C A N G ++
Sbjct: 168 EYECNATNSIGSASVSTVLR 187
Score = 84.1 bits (208), Expect = 1e-18
Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 33/192 (17%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
P+ +T + + + LT + + W NG +L + +
Sbjct: 3 EPRIVTSEEVIIRD-SLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM----- 56
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLK-------CVSKTNL-ILESQ------- 599
I E+SG Y C + + A+++ K + E Q
Sbjct: 57 EYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCK 115
Query: 600 -----LPEVEWFYNGKKLPHGH-----RYRTFHDFGIVILDILY-CYEENSGVYECRATN 648
PE W + R+ + L+I+ E+ G YEC ATN
Sbjct: 116 SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATN 175
Query: 649 KYGSDVTKASLK 660
GS L+
Sbjct: 176 SIGSASVSTVLR 187
Score = 76.4 bits (188), Expect = 4e-16
Identities = 36/239 (15%), Positives = 64/239 (26%), Gaps = 61/239 (25%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+P + + P+ L+ + + + W NG L + +
Sbjct: 2 NEPRIVTSEEV-IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM---- 56
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+ + D G Y C + + TI +++
Sbjct: 57 -EYRINKPRAEDSGEYHCVY-HFVSAPKANATI----------------------EVKA- 91
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLY 241
P T + N +EG+ A + G +
Sbjct: 92 ------------------APDITGHKRSE-NKNEGQDAMMYCKSV----GYPHPEWMWRK 128
Query: 242 NGKPIEASH-----RIRTVHAFGMVVLEILGTKI-EDTGVYTCRATNKWGQAEISVNLE 294
+ R ++ L I+ +I ED G Y C ATN G A +S L
Sbjct: 129 KENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187
Score = 71.0 bits (174), Expect = 3e-14
Identities = 34/191 (17%), Positives = 55/191 (28%), Gaps = 46/191 (24%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
W NG +L + + I E+SG Y C + + A+++
Sbjct: 35 MYSYWTKNGVELTATRKNASNM-----EYRINKPRAEDSGEYHCVY-HFVSAPKANATIE 88
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIP 718
+ P T + N +EG+ A +
Sbjct: 89 -------VKA--------------------APDITGHKRSE-NKNEGQDAMMYCKSV--- 117
Query: 719 VGDQTMTVEFLYNGKPIEASH-----RIRTVHAFGMVVLEILGTKI-EDTGVYTCRATNK 772
G + + R ++ L I+ +I ED G Y C ATN
Sbjct: 118 -GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNS 176
Query: 773 WGQAEISVNLE 783
G A +S L
Sbjct: 177 IGSASVSTVLR 187
Score = 64.1 bits (156), Expect = 7e-12
Identities = 26/156 (16%), Positives = 40/156 (25%), Gaps = 45/156 (28%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P+ + + + +C LT + + W NG + K S+ +
Sbjct: 3 EPRIVTSEEVIIRDS-LLPVTLQCNLTSSSHTLMYSYWTKNGVEL--TATRKNASNMEYR 59
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
I ++ DSGEY C + ATI+
Sbjct: 60 ---INKPRAEDSGEYHCVY-HFVSAPKANATIE--------------------------- 88
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 458
V AP EGQ A
Sbjct: 89 ----------VKAAPDITGHKRSEN-KNEGQDAMMY 113
Score = 55.2 bits (133), Expect = 8e-09
Identities = 23/103 (22%), Positives = 31/103 (30%), Gaps = 11/103 (10%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGH-----RY 545
V AP EGQ A + P W + R+
Sbjct: 89 VKAAPDITGHKRSEN-KNEGQDAMMYCK---SVGYPHPEWMWRKKENGVFEEISNSSGRF 144
Query: 546 RTFHDFGIVILDILY-CYEENSGVYECRATNKYGSDVTKASLK 587
+ L+I+ E+ G YEC ATN GS L+
Sbjct: 145 FIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187
Score = 52.2 bits (125), Expect = 9e-08
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P+ + + + + +L M + NG + A+ + +
Sbjct: 3 EPRIVTSEEVII-RDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM----- 56
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
I + ED+G Y C + + + +E
Sbjct: 57 EYRINKPRAEDSGEYHCVY-HFVSAPKANATIE 88
Score = 51.0 bits (122), Expect = 2e-07
Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 17/122 (13%)
Query: 49 AGKYQ---RQPSGPEET-----FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKI 100
+G+Y S P+ A P + E E Q + + P+ +
Sbjct: 68 SGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSE-NKNEGQDAMMYCKSV--GYPHPEW 124
Query: 101 EWIFNGKPL-----ELGSRFKTTADFGFVTLDLTEVYDR-DQGIYTCRAWNLAGETFTST 154
W + RF + L++ + D G Y C A N G ST
Sbjct: 125 MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVST 184
Query: 155 TI 156
+
Sbjct: 185 VL 186
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 96.2 bits (240), Expect = 5e-24
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
P+ T ++S + G + F + + P +V+W+HNG + +++ + G
Sbjct: 7 HAPRITLRMRSHR-VPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ ++I + DSG Y N GE AT+
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
Score = 93.5 bits (233), Expect = 4e-23
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
+ AP+ ++ + GQ+ F + + P V+W++NG +L + +
Sbjct: 5 LDHAPRITLRMRSHR-VPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
G++ L+IL C+ ++SG Y TN G A+L
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
Score = 86.2 bits (214), Expect = 2e-20
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
GP P + ++ ++ Q V+ + P +++W NG L+ S+
Sbjct: 1 GPFTLDHAPRITLRMRS-HRVPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHY 57
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKE 162
T G +TL++ + + D G Y N GE T+ + +
Sbjct: 58 TNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102
Score = 79.6 bits (197), Expect = 3e-18
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 201 RPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 258
P+ T + + G+ F ++ T V++ +NG ++ S +I +
Sbjct: 7 HAPRIT---LRMRSHRVPCGQNTRFILNV--QSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
G++ LEIL +D+G Y TN G+A L+
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
Score = 79.6 bits (197), Expect = 3e-18
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 690 RPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 747
P+ T + + G+ F ++ T V++ +NG ++ S +I +
Sbjct: 7 HAPRIT---LRMRSHRVPCGQNTRFILNV--QSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
G++ LEIL +D+G Y TN G+A L+
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
Score = 75.0 bits (185), Expect = 1e-16
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
EV+W++NG +L + + G++ L+IL C+ ++SG Y TN G A+L
Sbjct: 38 AEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
Score = 31.5 bits (72), Expect = 0.23
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 433 VAEAPKFITQISDVTQLKEGQSAHFEARLT 462
+ AP+ ++ + GQ+ F +
Sbjct: 5 LDHAPRITLRMRSHR-VPCGQNTRFILNVQ 33
Score = 27.6 bits (62), Expect = 5.2
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 1 MVKATNSKGSATTSGTLK 18
TN KG A+ TL
Sbjct: 80 RAVCTNYKGEASDYATLD 97
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 92.0 bits (229), Expect = 2e-22
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 490 APVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTF 548
P++ P +T + D T + A F + T +P W +GK + G +Y+
Sbjct: 1 GPISSKPVIVTGLQDTT-VSSDSVAKFAVK---ATGEPRPTAIWTKDGKAITQGGKYKLS 56
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
D G L+I +SG+Y C N GS + L
Sbjct: 57 EDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 86.2 bits (214), Expect = 2e-20
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
P + ++ + A F T +P W +GK I + K+ D G
Sbjct: 5 SKPVIVTGLQDTT-VSSDSVAKFAVKAT--GEPRPTAIWTKDGKAITQGGKYKLSEDKGG 61
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
++I + DSG Y C N G + +
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 75.0 bits (185), Expect = 1e-16
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+KPV + L+ + + +P W +GK + G ++K + D G
Sbjct: 5 SKPVIVTGLQD-TTVSSDSVAKFAVKAT--GEPRPTAIWTKDGKAITQGGKYKLSEDKGG 61
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L++ + D G+YTC N AG +S +
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 71.5 bits (176), Expect = 2e-15
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P + Q + +S +A F G+ T + +GK I + + G
Sbjct: 6 KPVIVTGLQDTT-VSSDSVAKFAVKA--TGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
LEI T D+G+YTC N G S L
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLT 95
Score = 71.5 bits (176), Expect = 2e-15
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P + Q + +S +A F G+ T + +GK I + + G
Sbjct: 6 KPVIVTGLQDTT-VSSDSVAKFAVKA--TGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
LEI T D+G+YTC N G S L
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLT 95
Score = 68.9 bits (169), Expect = 2e-14
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P W +GK + G +Y+ D G L+I +SG+Y C N GS + L
Sbjct: 36 PTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 36.9 bits (86), Expect = 0.003
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 431 APVAEAPKFITQISDVTQLKEGQSAHFEARLT 462
P++ P +T + D T + A F + T
Sbjct: 1 GPISSKPVIVTGLQDTT-VSSDSVAKFAVKAT 31
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 91.6 bits (228), Expect = 2e-22
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 363
+ I ++G + C + D +V W+ + + + + ++ + G +
Sbjct: 2 AMVSGQIMHAV-GEEGGHVKYVCKIEN-YDQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59
Query: 364 MDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396
+ + + D G Y C+ N YGED + A +
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 91.2 bits (227), Expect = 2e-22
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
QI +EG + ++ D V W++ ++L + +Y ++ G+
Sbjct: 1 GAMVSGQIMHAV-GEEGGHVKYVCKIEN-YDQSTQVTWYFGVRQLENSEKYEITYEDGVA 58
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588
IL + + + G Y C+ N YG D + A L
Sbjct: 59 ILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 77.4 bits (191), Expect = 2e-17
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
+V W++ ++L + +Y ++ G+ IL + + + G Y C+ N YG D + A L
Sbjct: 32 TQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
Query: 661 C 661
Sbjct: 92 V 92
Score = 77.4 bits (191), Expect = 2e-17
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
+ + E + ++E D + ++ W F + LE +++ T + G
Sbjct: 2 AMVSGQIMHAV-GEEGGHVKYVCKIEN-YDQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYC 158
L + ++ D G Y C+ N GE + ++
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 75.4 bits (186), Expect = 8e-17
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 210 QHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG 267
+ + EG + + DQ+ V + + + +E S + + G+ +L +
Sbjct: 6 GQIMHAVGEEGGHVKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKD 64
Query: 268 TKIEDTGVYTCRATNKWGQAEISVNLEC 295
D G Y C+ N +G+ L
Sbjct: 65 ITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 75.4 bits (186), Expect = 8e-17
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 699 QHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG 756
+ + EG + + DQ+ V + + + +E S + + G+ +L +
Sbjct: 6 GQIMHAVGEEGGHVKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKD 64
Query: 757 TKIEDTGVYTCRATNKWGQAEISVNLEC 784
D G Y C+ N +G+ L
Sbjct: 65 ITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 28.8 bits (65), Expect = 1.8
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 1 MVKATNSKGSATTSGTLKCLGQKD 24
K N G ++ L G ++
Sbjct: 74 RCKVVNDYGEDSSYAELFVKGVRE 97
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 94.9 bits (236), Expect = 3e-22
Identities = 48/209 (22%), Positives = 76/209 (36%), Gaps = 32/209 (15%)
Query: 198 EDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 255
++ PP+ L +S+GE A A G T T+E+ G+ +E
Sbjct: 5 QEDFPPRIVEHPSDLI-VSKGEPATLNCKAE----GRPTPTIEWYKGGERVETDKDDPRS 59
Query: 256 HAFGM-------VVLEILGTKIEDTGVYTCRATNKWGQ-----AEISVNLECVDKSKGQP 303
H + + + D GVY C A N G+ A + V +
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL--------R 111
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 363
F + + G+ A EC P PE + W +G P+ K+ + G
Sbjct: 112 DDFRQNPSDVMVA-VGEPAVMECQP-PRGHPEPTISWKKDGSPLDDKDERITIRG-G--K 166
Query: 364 MDIAYVQSHDSGEYVCRAWNKYGEDFTRA 392
+ I Y + D+G+YVC N GE +
Sbjct: 167 LMITYTRKSDAGKYVCVGTNMVGERESEV 195
Score = 83.3 bits (206), Expect = 3e-18
Identities = 34/202 (16%), Positives = 64/202 (31%), Gaps = 38/202 (18%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLP----- 540
P+ + SD+ + +G+ A + P +EW+ G+++
Sbjct: 1 GSLRQEDFPPRIVEHPSDLI-VSKGEPATLNCK---AEGRPTPTIEWYKGGERVETDKDD 56
Query: 541 HGHRYRTFHDFGIVILDILYCY--EENSGVYECRATNKYGSDVT-KASLKCVSKTNLILE 597
+ L I++ + GVY C A N G V+ ASL+ + +
Sbjct: 57 PRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQ 116
Query: 598 SQL----------------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY 635
+ P + W +G L T ++I
Sbjct: 117 NPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTR--- 173
Query: 636 EENSGVYECRATNKYGSDVTKA 657
+ ++G Y C TN G ++
Sbjct: 174 KSDAGKYVCVGTNMVGERESEV 195
Score = 80.2 bits (198), Expect = 3e-17
Identities = 40/185 (21%), Positives = 62/185 (33%), Gaps = 39/185 (21%)
Query: 601 PEVEWFYNGKKLP-----HGHRYRTFHDFGIVILDILYCY--EENSGVYECRATNKYGSD 653
P +EW+ G+++ + L I++ + GVY C A N G
Sbjct: 39 PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Query: 654 VT-KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 712
V+ ASL+ F + ++ GE A
Sbjct: 99 VSHDASLE--------------------------VAILRDDFRQNPSDVM-VAVGEPAVM 131
Query: 713 EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 772
E P G T+ + +G P++ T+ G L I T+ D G Y C TN
Sbjct: 132 ECQ-PPRGHPEPTISWKKDGSPLDDKDERITIRG-G--KLMITYTRKSDAGKYVCVGTNM 187
Query: 773 WGQAE 777
G+ E
Sbjct: 188 VGERE 192
Score = 78.7 bits (194), Expect = 1e-16
Identities = 49/262 (18%), Positives = 77/262 (29%), Gaps = 68/262 (25%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG-----SR 114
+ P + + + + +P L + E P IEW G+ +E S
Sbjct: 4 RQEDFPPRIVEHPS-DLIVSKGEPATLNCKAE--GRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 115 FKTTADFG--FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPK 172
F+ + D+G+Y C A N GE +
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDA----------------- 103
Query: 173 GEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD 232
SL F + ++ GE A E P G
Sbjct: 104 -------------SLE---------VAILRDDFRQNPSDVM-VAVGEPAVMECQ-PPRGH 139
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-----A 287
T+ + +G P++ T+ G L I T+ D G Y C TN G+ A
Sbjct: 140 PEPTISWKKDGSPLDDKDERITIRG-G--KLMITYTRKSDAGKYVCVGTNMVGERESEVA 196
Query: 288 EISVNLECVDKSKGQPPKFTSH 309
E++V + P F
Sbjct: 197 ELTVL---------ERPSFVKA 209
Score = 68.7 bits (168), Expect = 3e-13
Identities = 43/289 (14%), Positives = 70/289 (24%), Gaps = 109/289 (37%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-----FHKNRVKMVS 357
PP+ H L K G+ A C P +EW+ G+ + ++ ++
Sbjct: 9 PPRIVEHPSDLIVSK-GEPATLNCKAE--GRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 358 DFGFVVMDI--AYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARI 415
+ I D G YVC A N GE + A +
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD--------------------ASL 105
Query: 416 RELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFS 475
F SDV + G+ A E C+
Sbjct: 106 EVA---------------ILRDDFRQNPSDVM-VAVGEPAVME------------CQ--- 134
Query: 476 NFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN 535
+ P ++ K+G
Sbjct: 135 ----------PPRGHPEPT----------ISWKKDGSP---------------------- 152
Query: 536 GKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
L T ++I + ++G Y C TN G ++
Sbjct: 153 ---LDDKDERITIRGGKLMITYTR---KSDAGKYVCVGTNMVGERESEV 195
Score = 49.0 bits (117), Expect = 1e-06
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 687 EDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 744
++ PP+ L +S+GE A A G T T+E+ G+ +E
Sbjct: 5 QEDFPPRIVEHPSDLI-VSKGEPATLNCKAE----GRPTPTIEWYKGGERVETDKDDPRS 59
Query: 745 HAFGM-------VVLEILGTKIEDTGVYTCRATNKWGQA 776
H + + + D GVY C A N G+A
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 94.2 bits (234), Expect = 4e-22
Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 17/200 (8%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRTVHAFG 259
P E + + EG+ ++ +L N P+ R G
Sbjct: 8 DPFPPEERPEVR-VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV-----DKSKGQPPKFTSHIKSLE 314
L I + D G Y+C ++ + + +K P K +
Sbjct: 67 --NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124
Query: 315 GLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDS 374
L G + EC +P + W +P+ + V+ I +Q D
Sbjct: 125 ALM-GQNVTLECFALG--NPVPDIRWRKVLEPMPSTAEISTSGA----VLKIFNIQLEDE 177
Query: 375 GEYVCRAWNKYGEDFTRATI 394
G Y C A N G+D +A I
Sbjct: 178 GIYECEAENIRGKDKHQARI 197
Score = 79.9 bits (197), Expect = 3e-17
Identities = 41/236 (17%), Positives = 77/236 (32%), Gaps = 39/236 (16%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
GP + P F +PE ++ E + + L +L W+ N P+ + +
Sbjct: 1 GPGSGYLDP-FPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRR 59
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGL 177
L + V D+G Y+C + + S LI +
Sbjct: 60 FVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVF-----SKFIPLIPIPERTTKPY-- 112
Query: 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
P +F+ + G+ E +G+ +
Sbjct: 113 ------------------------PADIVVQFKDVY-ALMGQNVTLEC--FALGNPVPDI 145
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+ +P+ ++ I T A VL+I ++ED G+Y C A N G+ + +
Sbjct: 146 RWRKVLEPMPSTAEISTSGA----VLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197
Score = 77.6 bits (191), Expect = 2e-16
Identities = 32/192 (16%), Positives = 55/192 (28%), Gaps = 34/192 (17%)
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILD 557
F + ++KEG+ DL W N + R F L
Sbjct: 10 FPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLY 69
Query: 558 ILYCYEENSGVYECRATNKYGS-DVTKASLKCVSKTNLILESQ----------------- 599
I + G Y C ++ + V + + +
Sbjct: 70 IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQ 129
Query: 600 ------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
+P++ W + +P T + I +I E+ G+YEC A
Sbjct: 130 NVTLECFALGNPVPDIRWRKVLEPMPSTAEISTS-GAVLKIFNIQ---LEDEGIYECEAE 185
Query: 648 NKYGSDVTKASL 659
N G D +A +
Sbjct: 186 NIRGKDKHQARI 197
Score = 75.3 bits (185), Expect = 1e-15
Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 24/180 (13%)
Query: 603 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 662
W N + R F L I + G Y C ++ + +
Sbjct: 42 YRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFS----- 96
Query: 663 SKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ 722
I +PE +P P +F+ + G+ E +G+
Sbjct: 97 ---KFIPLIPIPERTTKPY---------PADIVVQFKDVY-ALMGQNVTLEC--FALGNP 141
Query: 723 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ + +P+ ++ I T A VL+I ++ED G+Y C A N G+ + +
Sbjct: 142 VPDIRWRKVLEPMPSTAEISTSGA----VLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197
Score = 58.0 bits (140), Expect = 1e-09
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 484 QPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE--ARLTPVTDPDLVVEWFYNGKKLPH 541
P+ + + Q DV GQ+ E A PV PD + W + +P
Sbjct: 102 IPIPERTTKPYPADIVVQFKDVY-ALMGQNVTLECFALGNPV--PD--IRWRKVLEPMPS 156
Query: 542 GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
T + I +I E+ G+YEC A N G D +A +
Sbjct: 157 TAEISTS-GAVLKIFNIQ---LEDEGIYECEAENIRGKDKHQARI 197
Score = 49.5 bits (118), Expect = 9e-07
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 5/116 (4%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRTVHAFG 748
P E + + EG+ ++ +L N P+ R G
Sbjct: 8 DPFPPEERPEVR-VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEVPQP 804
L I + D G Y+C ++ + ++ P +T Y V Q
Sbjct: 67 --NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQF 120
Score = 49.1 bits (117), Expect = 1e-06
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+V K Q + LE +P I W +P+ + T+
Sbjct: 112 YPADIVVQFKDV-YALMGQNVTLECFALG--NPVPDIRWRKVLEPMPSTAEISTSGA--- 165
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L + + D+GIY C A N+ G+ IY
Sbjct: 166 -VLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 89.3 bits (222), Expect = 1e-21
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT-FH 549
P EAPK +I T + +G AHF R+ PD EW+ NG K+ R +
Sbjct: 1 PSMEAPKIFERIQSQT-VGQGSDAHFRVRVVG--KPDPECEWYKNGVKIERSDRIYWYWP 57
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
+ + L I E+S +A N G + A L +K
Sbjct: 58 EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 88.1 bits (219), Expect = 3e-21
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV-SDFG 360
+ PK I+S + G AHF + P+ + EW+ NG I +R+ +
Sbjct: 4 EAPKIFERIQSQT-VGQGSDAHFRVRVVG--KPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+ I V DS + +A N GE + A + K
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 74.2 bits (183), Expect = 3e-16
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT-TADFGFV 124
P ++ + +G+ H +V K DP + EW NG +E R +
Sbjct: 6 PKIFERIQSQ-TVGQGSDAHFRVRVVGKPDP--ECEWYKNGVKIERSDRIYWYWPEDNVC 62
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + +V D +A N+AGET + +
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94
Score = 68.5 bits (168), Expect = 2e-14
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV-HAFG 259
P+ Q + + +G AHF + VG E+ NG IE S RI
Sbjct: 4 EAPKIFERIQSQT-VGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ L I ED+ +A N G+ L
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
Score = 68.5 bits (168), Expect = 2e-14
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV-HAFG 748
P+ Q + + +G AHF + VG E+ NG IE S RI
Sbjct: 4 EAPKIFERIQSQT-VGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ L I ED+ +A N G+ L
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
Score = 68.1 bits (167), Expect = 3e-14
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYRT-FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
PE EW+ NG K+ R + + + L I E+S +A N G + A L
Sbjct: 35 PECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94
Query: 660 KCVSK 664
+K
Sbjct: 95 LVQAK 99
Score = 28.0 bits (63), Expect = 4.1
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 1 MVKATNSKGSATTSGTLK 18
MVKA N G ++ L
Sbjct: 78 MVKAINIAGETSSHAFLL 95
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 96.5 bits (239), Expect = 3e-21
Identities = 56/457 (12%), Positives = 105/457 (22%), Gaps = 85/457 (18%)
Query: 246 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPK 305
IE + + G + +++ C + GQ+ L P+
Sbjct: 33 IETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVY-----WTPE 87
Query: 306 FTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM 364
G + C + L V K + + V + V
Sbjct: 88 RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP---AVGEPAEVTT 144
Query: 365 DIAYVQSHDSGEYVCRAWNKYGED--FTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
+ + H + CR + ++ P L R LE
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT 204
Query: 423 GQQP--VAQAAPVAEAPKFI----TQISDVTQLKEGQSAHFEARLTP-VTDPDLVCELFS 475
+ Q + T S +A ++ D +
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCA 264
Query: 476 NFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN 535
+ Q Q + P ++ + EG + P + +
Sbjct: 265 VILGN-QSQETLQTVTIYSFPAPNVILTKPE-VSEGTEVTVKCEAHPR--AKVTLNGVPA 320
Query: 536 GKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK------------ 583
P L + E+N + C AT + +
Sbjct: 321 QPLGPRAQ------------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG 368
Query: 584 -------------------ASLKCVSKTNLILESQLPEVEWFYNGKK-LPHGHRYRTFHD 623
+ C + N LPE++ +G LP G
Sbjct: 369 PRLDERDCPGNWTWPENSQQTPMCQAWGNP-----LPELKCLKDGTFPLPIGESVTV--- 420
Query: 624 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
+ G Y CRA + G + ++
Sbjct: 421 -----------TRDLEGTYLCRARSTQGEVTREVTVN 446
Score = 91.1 bits (225), Expect = 2e-19
Identities = 70/533 (13%), Positives = 128/533 (24%), Gaps = 100/533 (18%)
Query: 67 VFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTL 126
+ P K G + + L IE K L L
Sbjct: 2 TSVSPSKVILPRGG--SVLVTCSTSCDQPMLLGIETPLPKKELLLPGN-------NRKVY 52
Query: 127 DLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEES 186
+L+ V ++ C + G++ T +
Sbjct: 53 ELSNV--QEDSQPMCYSNCPDGQSTAKTFLTVY--------------------------- 83
Query: 187 LRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG-DQTMTVEFLYNGKP 245
P+ S G+ + +TV L K
Sbjct: 84 --------------WTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKE 129
Query: 246 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ--- 302
+ R V V +L + ++CR + + + Q
Sbjct: 130 L---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFV 186
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
P + S L+ C+L + E +V + + N + F
Sbjct: 187 LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL---NPTVTYGNDSF 243
Query: 362 VVMDIAYVQSHDSGEY--VCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELE 419
V + D G C T T+ +Y P + + E
Sbjct: 244 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT------IY---SFPAPNVILTKPE 294
Query: 420 NAQGQQPV--AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTD-PDLVCELFSN 476
++G + +A P A+ ++ V G A + TP + C
Sbjct: 295 VSEGTEVTVKCEAHPRAKV-----TLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLE 349
Query: 477 FFPSQGQQPVAQAAPVAEAPKF-ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN 535
+ + V P+ E + +P ++ +
Sbjct: 350 VAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW--GNPLPELKCLKD 407
Query: 536 GKK-LPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
G LP G + G Y CRA + G + ++
Sbjct: 408 GTFPLPIGESVTV--------------TRDLEGTYLCRARSTQGEVTREVTVN 446
Score = 75.3 bits (184), Expect = 3e-14
Identities = 65/507 (12%), Positives = 125/507 (24%), Gaps = 106/507 (20%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G S C+ + L +E K + V +++ VQ + + +
Sbjct: 14 GGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGN-------NRKVYELSNVQ--EDSQPM 64
Query: 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLA-RIRELENAQGQQ-----PVAQAAP 432
C + G+ + + + PE + G+ V AP
Sbjct: 65 CYSNCPDGQSTAKTFLTVYWT---------PERVELAPLPSWQPVGKNLTLRCQVEGGAP 115
Query: 433 VAEAP----KFITQISDVTQLKEGQSAHFEARLTPVTD-PDLVCELFSNFFPSQGQQPVA 487
A + ++ + E + + C + P +
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFEN 175
Query: 488 QAAP----VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHG 542
+AP P Q+ L+ L + + V ++L
Sbjct: 176 TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--- 232
Query: 543 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS----LKCVSKTNLILES 598
+ T+ + + E+ G G+ + + N+IL
Sbjct: 233 NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTK 292
Query: 599 Q----------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
+V P G R + L + E+N +
Sbjct: 293 PEVSEGTEVTVKCEAHPRAKVTLN-GVPAQPLGPRAQ---------LLLKATPEDNGRSF 342
Query: 643 ECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLS 702
C AT + + + L P ++ P +
Sbjct: 343 SCSATLEVAGQLIHKN------QTRELRVLYG---------PRLDERDCPGNWT------ 381
Query: 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDT 762
E G+ ++ L +G TV +
Sbjct: 382 -WPENSQQTPMCQ--AWGNPLPELKCLKDGTFPLPIGESVTV-------------TRDLE 425
Query: 763 GVYTCRATNKWGQAEISVNLECVVWSP 789
G Y CRA + G+ V + V SP
Sbjct: 426 GTYLCRARSTQGEVTREVTVN--VLSP 450
Score = 69.5 bits (169), Expect = 2e-12
Identities = 40/352 (11%), Positives = 79/352 (22%), Gaps = 73/352 (20%)
Query: 45 EHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKN-DPNLKIEWI 103
L +TF P L L + ++ ++
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLA 226
Query: 104 FNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKES 163
+ L + + ++ +T D TC T T+
Sbjct: 227 LGDQRLNPTVTYGNDSFSAKASVSVTAE-DEGTQRLTCAVILGNQSQETLQTV------- 278
Query: 164 LIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 223
++ PA +SEG
Sbjct: 279 ----------------------TIYSFPAPNVILTK-------------PEVSEGTEVTV 303
Query: 224 EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 283
+ P +T+ + + L + T ++ ++C AT +
Sbjct: 304 KCEAHPR--AKVTLNGVPAQPLGPRAQ------------LLLKATPEDNGRSFSCSATLE 349
Query: 284 WGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHN 343
I N + P + C +P +++ +
Sbjct: 350 VAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW--GNPLPELKCLKD 407
Query: 344 GKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
G + + V G Y+CRA + GE T+
Sbjct: 408 GTFPLP-------------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 446
Score = 69.1 bits (168), Expect = 2e-12
Identities = 41/354 (11%), Positives = 72/354 (20%), Gaps = 67/354 (18%)
Query: 46 HALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKN-DPNLKIEWIF 104
++ Q + P + + L L QVE NL + +
Sbjct: 66 YSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR 125
Query: 105 NGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESL 164
K L+ A+ VT + D ++CR L
Sbjct: 126 GEKELKREPAVGEPAE---VTTTVLVRRDHHGANFSCRTELDLR----------PQGLEL 172
Query: 165 IERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE 224
E T P + P + L
Sbjct: 173 FENTSAPYQLQTFV-----------------------LPATPPQLVSPRVLEVDTQGTVV 209
Query: 225 ---ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY--TCR 279
L PV V + + + T + ED G TC
Sbjct: 210 CSLDGLFPV--SEAQVHLALGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCA 264
Query: 280 ATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVE 339
E + P + E + +G +C P ++ +
Sbjct: 265 VILGNQSQETLQTVTIY-----SFPAPNVILTKPE-VSEGTEVTVKCEAHPR--AKVTLN 316
Query: 340 WFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
+ + + + C A +
Sbjct: 317 GVPAQPLG------------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN 358
Score = 52.6 bits (125), Expect = 3e-07
Identities = 40/317 (12%), Positives = 66/317 (20%), Gaps = 61/317 (19%)
Query: 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEE 564
L G S + L +E K+L G+ + + + ++ +
Sbjct: 9 VILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVY-----ELSNV-----Q 58
Query: 565 NSGVYECRATNKYGSDVTKASLKCVSK----------------TNLILE--------SQL 600
C + G K L NL L
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
V K+L R + V +L + + + CR +
Sbjct: 119 LTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFEN 175
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
S + LP Q E L +SE
Sbjct: 176 -TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSE-------------- 220
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY--TCRATNKWGQAEI 778
V + + + T + ED G TC E
Sbjct: 221 ---AQVHLALGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET 274
Query: 779 SVNLECVVWSPSQTKLV 795
+ + L
Sbjct: 275 LQTVTIYSFPAPNVILT 291
Score = 39.1 bits (90), Expect = 0.006
Identities = 30/226 (13%), Positives = 56/226 (24%), Gaps = 53/226 (23%)
Query: 584 ASLKCVSKTN----LILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENS 639
+ C + + L +E+ LP+ E L G+ + + + ++ +
Sbjct: 17 VLVTCSTSCDQPMLLGIETPLPKKE------LLLPGNNRKVY-----ELSNV-----QED 60
Query: 640 GVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQ 699
C + G K L P+
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVY---------------------------WTPERVELAP 93
Query: 700 HLSNLSEGEIAHFEASLIPVG-DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTK 758
S G+ + +TV L K + R V V +L +
Sbjct: 94 LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRR 150
Query: 759 IEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEVPQP 804
++CR + L +P Q + PQ
Sbjct: 151 DHHGANFSCRTELDLRPQ--GLELFENTSAPYQLQTFVLPATPPQL 194
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 94.6 bits (234), Expect = 5e-21
Identities = 46/361 (12%), Positives = 91/361 (25%), Gaps = 72/361 (19%)
Query: 68 FIVPLKPEFKLGEAQPLHLE---------AQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
+ + + ++ E +P ++ + L + W + + +L
Sbjct: 9 WGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFR 68
Query: 119 ADFGFV-----TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKG 173
+ L D G YTC N + + +
Sbjct: 69 LPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPL----------------- 111
Query: 174 EEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ 233
++ P + I
Sbjct: 112 -----EVV-------------QKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSV 153
Query: 234 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT----NKWGQAEI 289
T+ + I+ + + + L L I + G YTC T +
Sbjct: 154 KPTITWYMGCYKIQNFNNVI----PEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTR 209
Query: 290 SVNLECVDKSKGQPPKFTSHIKSLEGLK--DGDSAHFEC--TLTPVNDPELKVEWFHNGK 345
++ ++ V K P + G+ C + + D +V W +GK
Sbjct: 210 TLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGK 269
Query: 346 PIFH----------KNRVKMVSDFGFVVMDIAYVQSHD-SGEYVCRAWNKYGEDFTRATI 394
+ + + ++ I V S D YVC A + GE A +
Sbjct: 270 KPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329
Query: 395 K 395
K
Sbjct: 330 K 330
Score = 82.6 bits (203), Expect = 5e-17
Identities = 46/341 (13%), Positives = 80/341 (23%), Gaps = 78/341 (22%)
Query: 510 EGQSAHFE---------ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILD--- 557
E + A + + L + W++ + + +
Sbjct: 21 EDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDV 80
Query: 558 --ILYCYEENSGVYECRATNKYGSDVTKASLK---------------------------- 587
++G Y C N L+
Sbjct: 81 LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140
Query: 588 -CVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRA 646
C + S P + W+ K+ + + L L N+G Y C
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMN----LSFLIALISNNGNYTCVV 196
Query: 647 TNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQH-LSNLS 705
T + L ++ PP S H +
Sbjct: 197 TYPENGRTFHLT------RTLTVKVVGSPKNA-----------VPPVIHSPNDHVVYEKE 239
Query: 706 EGEIAHF--EASLIPVGDQTMTVEFLYNGKPI----------EASHRIRTVHAFGMVVLE 753
GE + D V + +GK E+ RT +L
Sbjct: 240 PGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILS 299
Query: 754 ILGTKIEDTGV-YTCRATNKWGQAEISVNLECVVWSPSQTK 793
I ED Y C A + G+ + ++ V +P T
Sbjct: 300 IKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYTV 340
Score = 70.3 bits (171), Expect = 6e-13
Identities = 44/333 (13%), Positives = 82/333 (24%), Gaps = 48/333 (14%)
Query: 295 CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTL---------TPVNDPELKVEWFHNGK 345
C D I+ E + A +C L + + L + W+ +
Sbjct: 6 CDDWGL----DTMRQIQVFED----EPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQ 57
Query: 346 PIFHKNRVKMVSDFGFVVMD-----IAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKG 400
+ + + + +D+G Y C N ++ K
Sbjct: 58 DRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKD 117
Query: 401 GVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA- 459
+ ++ E + P + IT +++ + E
Sbjct: 118 SCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM 177
Query: 460 --RLTPVTDPDL---VCELFSNFFPSQGQQP-----VAQAAPVAEAPKFITQISDVTQLK 509
+ C + +P P I +D +
Sbjct: 178 NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYE 237
Query: 510 --EGQSAHF--EARLTPVTDPDLVVEWFYNGKKLPHG----------HRYRTFHDFGIVI 555
G+ + + D V W +GKK RT + I
Sbjct: 238 KEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQI 297
Query: 556 LDILYCYEENSGV-YECRATNKYGSDVTKASLK 587
L I E+ Y C A + G A +K
Sbjct: 298 LSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVK 330
Score = 63.3 bits (153), Expect = 8e-11
Identities = 42/265 (15%), Positives = 68/265 (25%), Gaps = 57/265 (21%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
+ F P+ + K + G + + I W ++ +
Sbjct: 116 KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPE 175
Query: 119 ADFGFVTLDLTEVYDRDQGIYTCRA-WNLAGETFTST-TIYCSTKESLIERTQHPKGEEG 176
L + G YTC + G TF T T+ S
Sbjct: 176 GM----NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS------------- 218
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH-LSNLSEGEIAHF--EASLIPVGDQ 233
++ PP S H + GE + D
Sbjct: 219 --------------------PKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDS 258
Query: 234 TMTVEFLYNGKPI----------EASHRIRTVHAFGMVVLEILGTKIEDTGV-YTCRATN 282
V + +GK E+ RT +L I ED Y C A +
Sbjct: 259 RNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARS 318
Query: 283 KWGQAEISVNLECVDKSKGQPPKFT 307
G+ + + K K P++T
Sbjct: 319 AKGEVAKAAKV----KQKVPAPRYT 339
Score = 54.9 bits (131), Expect = 5e-08
Identities = 32/223 (14%), Positives = 55/223 (24%), Gaps = 53/223 (23%)
Query: 486 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY 545
V Q +P + + + + + W+ K+ + +
Sbjct: 113 VVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNV 172
Query: 546 RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS-------------------- 585
L L N+G Y C T +
Sbjct: 173 IPEGMN----LSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIH 228
Query: 586 -----------------LKCVSKTNLILESQLPEVEWFYNGKKLPHG----------HRY 618
+ C + +++S+ EV W +GKK
Sbjct: 229 SPNDHVVYEKEPGEELLIPCTVYFSFLMDSR-NEVWWTIDGKKPDDITIDVTINESISHS 287
Query: 619 RTFHDFGIVILDILYCYEENSGV-YECRATNKYGSDVTKASLK 660
RT + IL I E+ Y C A + G A +K
Sbjct: 288 RTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVK 330
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 93.2 bits (231), Expect = 5e-21
Identities = 43/334 (12%), Positives = 77/334 (23%), Gaps = 70/334 (20%)
Query: 69 IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDL 128
+ P PE L + L + W + F L L
Sbjct: 3 VTPPGPELVLNVSSTFVLTCSGSAP------VVWERMSQEPPQEMAKAQDGTFSS-VLTL 55
Query: 129 TEVYDRDQGIYTCRAWNLAGE---TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
T + D G Y C + G I+
Sbjct: 56 TNLTGLDTGEYFCTHNDSRGLETDERKRLYIF---------------------------- 87
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP 245
VPD + L+E V D + V
Sbjct: 88 --------VPDPT--VGFLPNDAEELFIFLTEITEITIPCR---VTDPQLVVTLHEKKGD 134
Query: 246 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPK 305
+ F + I + Y C+ T + + V + +
Sbjct: 135 VALPVPYDHQRGF---------SGIFEDRSYICKTTIGDREVDSDAYY--VYRLQVSSIN 183
Query: 306 FTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH--KNRVKMVSDFGFVV 363
+ + ++ G++ C + + + EW + K + + D + +
Sbjct: 184 VSVNAVQTV-VRQGENITLMCIVI--GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHI 240
Query: 364 MD---IAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
I + DSG Y C + I
Sbjct: 241 RSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274
Score = 72.4 bits (177), Expect = 6e-14
Identities = 37/285 (12%), Positives = 69/285 (24%), Gaps = 68/285 (23%)
Query: 530 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS---- 585
V W ++ P F V L + ++G Y C + G + +
Sbjct: 28 VVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYI 86
Query: 586 ------------------LKCVSKTNLILESQL----PEVEWFYNGKKLPHGHRYRTFHD 623
+ T + + ++ V + Y H
Sbjct: 87 FVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYD--HQ 144
Query: 624 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGV 683
G + Y C+ T + A +
Sbjct: 145 RGFSGI-------FEDRSYICKTTIGDREVDSDAYYVYRLQV------------------ 179
Query: 684 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 743
+ + +GE +I G++ + E+ Y K T
Sbjct: 180 ------SSINVSVNAVQTV-VRQGENITLMCIVI--GNEVVNFEWTYPRKESGRLVEPVT 230
Query: 744 VHAFGMV-----VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
M +L I ++ED+G YTC T + +
Sbjct: 231 DFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
Score = 70.5 bits (172), Expect = 3e-13
Identities = 41/305 (13%), Positives = 78/305 (25%), Gaps = 82/305 (26%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
+ C+ + V W + + F V+ + + D+GEY
Sbjct: 15 SSTFVLTCSGSA------PVVWERMSQEPPQEMAKAQDGTFSSVLT-LTNLTGLDTGEYF 67
Query: 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPK 438
C + G + +Y+ P
Sbjct: 68 CTHNDSRGLETDERKR-------LYIFVPDPTVG-------------------------- 94
Query: 439 FITQISD--VTQLKEGQSAHFEARLTPVTDPDLVCELFSN---------FFPSQGQQPVA 487
F+ ++ L E R VTDP LV L + +G +
Sbjct: 95 FLPNDAEELFIFLTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIF 151
Query: 488 QAAP--------------------VAEAPKFITQISDVTQ-LKEGQSAHFEARLTPVTDP 526
+ + ++ V +++G++ + +
Sbjct: 152 EDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVI--GNE 209
Query: 527 DLVVEWFYNGKKLPHGHRYRTFHDFGIV-----ILDILYCYEENSGVYECRATNKYGSDV 581
+ EW Y K+ T + IL I E+SG Y C T
Sbjct: 210 VVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQ 269
Query: 582 TKASL 586
+ ++
Sbjct: 270 DEKAI 274
Score = 67.8 bits (165), Expect = 2e-12
Identities = 34/197 (17%), Positives = 51/197 (25%), Gaps = 52/197 (26%)
Query: 498 FITQISD--VTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
F+ ++ L E R VTDP LVV + Y H G
Sbjct: 95 FLPNDAEELFIFLTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYD--HQRGFSG 149
Query: 556 LDILYCYEENSGVYECRATNKYGSDVT----------------------------KASLK 587
+ Y C+ T + +L
Sbjct: 150 I-------FEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLM 202
Query: 588 CVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIV-----ILDILYCYEENSGVY 642
C+ N ++ EW Y K+ T + IL I E+SG Y
Sbjct: 203 CIVIGN-----EVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTY 257
Query: 643 ECRATNKYGSDVTKASL 659
C T + ++
Sbjct: 258 TCNVTESVNDHQDEKAI 274
Score = 50.1 bits (119), Expect = 1e-06
Identities = 29/205 (14%), Positives = 51/205 (24%), Gaps = 55/205 (26%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
DP L + + L + GF + + Y C+ E
Sbjct: 121 DPQLVVTLHEKKGDVALPVPYDHQ--RGFSGIF-------EDRSYICKTTIGDREV---- 167
Query: 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214
+ + R Q +
Sbjct: 168 ----DSDAYYVYRLQVS------------------------------SINVSVNAVQTV- 192
Query: 215 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV-----VLEILGTK 269
+ +GE +I G++ + E+ Y K T M +L I +
Sbjct: 193 VRQGENITLMCIVI--GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAE 250
Query: 270 IEDTGVYTCRATNKWGQAEISVNLE 294
+ED+G YTC T + +
Sbjct: 251 LEDSGTYTCNVTESVNDHQDEKAIN 275
Score = 49.3 bits (117), Expect = 2e-06
Identities = 26/207 (12%), Positives = 45/207 (21%), Gaps = 43/207 (20%)
Query: 584 ASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYE 643
L C V W ++ P F V L + ++G Y
Sbjct: 18 FVLTCSGS---------APVVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTGEYF 67
Query: 644 CRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSN 703
C + G + + + VPD +
Sbjct: 68 CTHNDSRGLETDERKRLYIF-------------------VPDPT--VGFLPNDAEELFIF 106
Query: 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG 763
L+E V D + V + F + I +
Sbjct: 107 LTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYDHQRGF---------SGIFEDR 154
Query: 764 VYTCRATNKWGQAEISVNLECVVWSPS 790
Y C+ T + + + S
Sbjct: 155 SYICKTTIGDREVDSDAYYVYRLQVSS 181
Score = 47.8 bits (113), Expect = 6e-06
Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 7/98 (7%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
+ + + + + + + L V + + EW + K T
Sbjct: 180 SSINVSVNAVQTVVRQGENITLMCIV--IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMP 237
Query: 125 -----TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L + D G YTC + I
Sbjct: 238 YHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 91.7 bits (227), Expect = 2e-20
Identities = 59/354 (16%), Positives = 92/354 (25%), Gaps = 73/354 (20%)
Query: 55 QPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR 114
QPS + P I P + E + L L + W F E+
Sbjct: 2 QPSASPGEPSPPS-IHPAQSELIVEAGDTLSLTCIDPDF------VRWTFKTYFNEMVEN 54
Query: 115 FKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGE 174
K + G YTC N +S ++ L G+
Sbjct: 55 KKNE-------WIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGLPLFGK 104
Query: 175 EGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT 234
E A V + + E
Sbjct: 105 ED-------------SDALVRCPLTDPQVS--------------QYSLIE---------- 127
Query: 235 MTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+GK + G+ + + + C A G S
Sbjct: 128 ------CDGKSLPTDLTFVPNPKAGITIKNV--KRAYHRLCVRCAAQRD-GTWLHSDKFT 178
Query: 295 -CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV 353
V ++ P + S LK GD+ CT+ V+ + W H +V
Sbjct: 179 LKVREAIKAIPVVSVPETSHL-LKKGDTFTVVCTIKDVSTS-VNSMWLKMNPQPQHIAQV 236
Query: 354 KMVSDFGFV-------VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKG 400
K S + I+ + DSG ++C A N +G T+K KG
Sbjct: 237 KHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290
Score = 82.1 bits (202), Expect = 3e-17
Identities = 42/334 (12%), Positives = 86/334 (25%), Gaps = 79/334 (23%)
Query: 480 SQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL 539
SQ + +P P S++ ++ G + V W +
Sbjct: 1 SQPSASPGEPSP----PSIHPAQSELI-VEAGDTLSLTCIDPDF------VRWTFKTYFN 49
Query: 540 PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV------------------ 581
+ +G Y C +N S +
Sbjct: 50 EMVENKKN-------EWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLF 102
Query: 582 ----TKASLKCVSKTNLILESQLPEVEWF-YNGKKLPHGHRYRTFHDFGIVILDILYCYE 636
+ A ++C Q+ + +GK LP + GI I ++
Sbjct: 103 GKEDSDALVRCPLTDP-----QVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKR--A 155
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
+ C A + V + P +
Sbjct: 156 YHRLCVRCAAQRDGTWLHSDKFTLKVREAIKA----------------------IPVVSV 193
Query: 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV------ 750
L +G+ + I ++ +L + +++
Sbjct: 194 PETSHL-LKKGDTFTVVCT-IKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQ 251
Query: 751 -VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L I +++D+GV+ C A N +G A ++ L+
Sbjct: 252 ETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
Score = 59.4 bits (143), Expect = 1e-09
Identities = 39/303 (12%), Positives = 78/303 (25%), Gaps = 64/303 (21%)
Query: 16 TLKCLGQKDIY-----LETQHPMGAAGLEKVQEVEHALAGKYQ-RQPSGPEET-----FA 64
+L C+ + + ++ E G Y +G +
Sbjct: 31 SLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRD 90
Query: 65 KPVFIVPLKPEF-KLGEAQPLHLEAQVEPKNDPNLKIEWI-FNGKPLELGSRFKTTADFG 122
+ P F K + + I +GK L F G
Sbjct: 91 PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQ----YSLIECDGKSLPTDLTFVPNPKAG 146
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
++ Y + C A G S ++ + K
Sbjct: 147 ITIKNVKRAYH--RLCVRCAAQR-DGTWLHSDKFT-------LKVREAIKA--------- 187
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
P + L +G+ + I ++ +L
Sbjct: 188 -------------------IPVVSVPETSHL-LKKGDTFTVVCT-IKDVSTSVNSMWLKM 226
Query: 243 GKPIEASHRIRTVHAFGMV-------VLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 295
+ +++ L I +++D+GV+ C A N +G A ++ L+
Sbjct: 227 NPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Query: 296 VDK 298
V+K
Sbjct: 287 VEK 289
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 88.0 bits (218), Expect = 2e-20
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 5/128 (3%)
Query: 268 TKIEDTGVYTCRATNKWGQAEISVNLEC-VDKSKGQPPKFTSHIKSLEGLKDGDSAHFEC 326
+ + +G N LE ++ P FT I +E + +G +A F+C
Sbjct: 5 SGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVV-EGSAARFDC 63
Query: 327 TLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD-FGFVVMDIAYVQSHDSGEYVCRAWNKY 385
+ P+ +V WF + P+ ++ D G + I+ V D +Y C+A N
Sbjct: 64 KVEG--YPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSL 121
Query: 386 GEDFTRAT 393
GE A
Sbjct: 122 GEATCTAE 129
Score = 79.9 bits (197), Expect = 1e-17
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFH 549
P F I D+ + EG +A F+ ++ PD V WF + + ++ +
Sbjct: 37 KPHVKPYFTKTILDME-VVEGSAARFDCKVEG--YPDPEVMWFKDDNPVKESRHFQIDYD 93
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ G L I ++ Y C+A N G A L
Sbjct: 94 EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131
Score = 70.7 bits (173), Expect = 2e-14
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 55 QPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR 114
+ E+ KP F + ++ E + +VE P+ ++ W + P++
Sbjct: 31 EEVAEEKPHVKPYFTKTILD-MEVVEGSAARFDCKVEG--YPDPEVMWFKDDNPVKESRH 87
Query: 115 FKTTAD-FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKG 173
F+ D G +L ++EV D YTC+A N GE + + T E +
Sbjct: 88 FQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEE 147
Query: 174 EEGLEK 179
+E E+
Sbjct: 148 DEEEEE 153
Score = 67.6 bits (165), Expect = 2e-13
Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 25/146 (17%)
Query: 639 SGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEF 698
SG N + A L+ V++ + P FT
Sbjct: 10 SGSSPTSPINANKVENEDAFLEEVAEE---------------------KPHVKPYFTKTI 48
Query: 699 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGT 757
+ + EG A F+ + G V + + P++ S + G L I
Sbjct: 49 LDME-VVEGSAARFDCKV--EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV 105
Query: 758 KIEDTGVYTCRATNKWGQAEISVNLE 783
+D YTC+A N G+A + L
Sbjct: 106 CGDDDAKYTCKAVNSLGEATCTAELL 131
Score = 66.4 bits (162), Expect = 5e-13
Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 194 VPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR 253
V + + P FT + + EG A F+ + G V + + P++ S +
Sbjct: 33 VAEEKPHVKPYFTKTILDME-VVEGSAARFDCKV--EGYPDPEVMWFKDDNPVKESRHFQ 89
Query: 254 -TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKS 312
G L I +D YTC+A N G+A + L ++ G+ + +
Sbjct: 90 IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV--ETMGKEGEGEGEGEE 147
Query: 313 LE 314
E
Sbjct: 148 DE 149
Score = 64.9 bits (158), Expect = 2e-12
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
PEV WF + + ++ + + G L I ++ Y C+A N G A L
Sbjct: 71 PEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
Query: 660 K 660
Sbjct: 131 L 131
Score = 32.5 bits (74), Expect = 0.24
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 398 GKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHF 457
G G P S ++EN P F I D+ + EG +A F
Sbjct: 3 GMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDME-VVEGSAARF 61
Query: 458 EARLT 462
+ ++
Sbjct: 62 DCKVE 66
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 88.5 bits (219), Expect = 4e-20
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 16/172 (9%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
T + N R+ + + EDTG YTC + + G +
Sbjct: 42 QGDTTRLVCYNNKITASYEDRVTFLPT----GITFKSVTREDTGTYTCMVSEEGGNSYGE 97
Query: 291 VNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHK 350
V ++ + PP + G+ A C+ + P + WF +G +
Sbjct: 98 VKVKLIVLV---PPSKPTVNIPSS-ATIGNRAVLTCSEQDGS-PPSEYTWFKDGIVMPTN 152
Query: 351 NRVKMVSDFGFVVMD-------IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ V++ + + D+GEY C A N YG T ++
Sbjct: 153 PKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
Score = 76.2 bits (187), Expect = 7e-16
Identities = 38/226 (16%), Positives = 61/226 (26%), Gaps = 56/226 (24%)
Query: 576 KYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYR-----------TFHDF 624
+ V L C P VEW ++ Y TF
Sbjct: 17 PENNPVK---LSCAYSGF-----SSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT 68
Query: 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVP 684
GI + E++G Y C + + G+ + +K L +P
Sbjct: 69 GITFKSVT---REDTGTYTCMVSEEGGNSYGEVKVK--------LIVLVP---------- 107
Query: 685 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 744
P + S + G A S G + +G + + +
Sbjct: 108 -------PSKPTVNIPSS-ATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRA 158
Query: 745 HAFGMVV-------LEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ V L DTG Y+C A N +G S +
Sbjct: 159 FSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
Score = 70.4 bits (172), Expect = 7e-14
Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 46/209 (22%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR------ 546
A + ++ E + VEW ++ Y
Sbjct: 1 AMGSVTVHSSEPEVRIPENNPVKLSCAYS--GFSSPRVEWKFDQGDTTRLVCYNNKITAS 58
Query: 547 -----TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK-----------CVS 590
TF GI + E++G Y C + + G+ + +K
Sbjct: 59 YEDRVTFLPTGITFKSVT---REDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNI 115
Query: 591 KTNLILESQL------------PEVEWFYNGKKLPHGHRYRTFHDFGIVI-------LDI 631
++ + ++ E WF +G +P + + L
Sbjct: 116 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVF 175
Query: 632 LYCYEENSGVYECRATNKYGSDVTKASLK 660
++G Y C A N YG+ +T +++
Sbjct: 176 DPLSASDTGEYSCEARNGYGTPMTSNAVR 204
Score = 69.2 bits (169), Expect = 2e-13
Identities = 29/215 (13%), Positives = 50/215 (23%), Gaps = 56/215 (26%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTADFGFV--------TLDLTEVYDRDQGIYTCRAWNL 146
+ ++EW F+ + + + V D G YTC
Sbjct: 31 FSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE 90
Query: 147 AGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFT 206
G ++ + PP
Sbjct: 91 GGNSYGEVKVKLIVLV---------------------------------------PPSKP 111
Query: 207 SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV---- 262
+ S + G A S G + +G + + + + V
Sbjct: 112 TVNIPSS-ATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPT 169
Query: 263 ---LEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
L DTG Y+C A N +G S +
Sbjct: 170 TGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
Score = 53.0 bits (127), Expect = 5e-08
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 9/103 (8%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
V P T + G A P WF +G +P +
Sbjct: 104 VLVPPSKPTVNIPSS-ATIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSN 161
Query: 552 GIVI-------LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ L ++G Y C A N YG+ +T +++
Sbjct: 162 SSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
Score = 48.0 bits (114), Expect = 2e-06
Identities = 17/101 (16%), Positives = 24/101 (23%), Gaps = 9/101 (8%)
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
P P L E P + W +G + +
Sbjct: 105 LVPPSKPTVNIPS-SATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162
Query: 123 FV-------TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + D G Y+C A N G TS +
Sbjct: 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203
Score = 43.0 bits (101), Expect = 1e-04
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 720 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
T + N R+ + + EDTG YTC + + G +
Sbjct: 42 QGDTTRLVCYNNKITASYEDRVTFLPT----GITFKSVTREDTGTYTCMVSEEGGNSYGE 97
Query: 780 VNLECVVWSP 789
V ++ +V P
Sbjct: 98 VKVKLIVLVP 107
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 87.2 bits (216), Expect = 6e-20
Identities = 30/199 (15%), Positives = 60/199 (30%), Gaps = 32/199 (16%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
+ L+ +S+G+ S G + ++++ +G ++ ++ +
Sbjct: 2 GLKLMGAPVKLT-VSQGQPVKLNCS--VEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHW 58
Query: 262 V--LEILGTKIEDTGVYTCRATNKWGQ-----AEISVNLECVDKSKGQPPKFTSHIKSLE 314
+ L + + D G Y C+ + ++V P FT K L
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE---------GVPFFTVEPKDLA 109
Query: 315 GLKDGDSAHFECTLTPVNDPE-LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHD 373
+ C V PE + + W+ I V +
Sbjct: 110 -VPPNAPFQLSC--EAVGPPEPVTIVWWRGTTKIGGPAPSPSV---------LNVTGVTQ 157
Query: 374 SGEYVCRAWNKYGEDFTRA 392
S + C A N G +R
Sbjct: 158 STMFSCEAHNLKGLASSRT 176
Score = 75.6 bits (186), Expect = 6e-16
Identities = 27/180 (15%), Positives = 58/180 (32%), Gaps = 41/180 (22%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVI--LDILYCYEENSGVYECRATNKYGSDVTKAS 658
P+++W +G + + + I L + ++G Y C+ + +++++
Sbjct: 32 PDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ-- 89
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 718
L +E P FT E + L +
Sbjct: 90 -----PVWLTVEG-------------------VPFFTVEPKDL-AVPPNAPFQLSCE--A 122
Query: 719 VGD-QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
VG + +T+ + I +V L + G + + +++C A N G A
Sbjct: 123 VGPPEPVTIVWWRGTTKIGGPAPSPSV-------LNVTG--VTQSTMFSCEAHNLKGLAS 173
Score = 70.2 bits (172), Expect = 4e-14
Identities = 25/195 (12%), Positives = 58/195 (29%), Gaps = 52/195 (26%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
K + +T + +GQ + + +PD ++W +G + + +
Sbjct: 2 GLKLMGAPVKLT-VSQGQPVKLNCSVEGMEEPD--IQWVKDGAVVQNLDQLYIPVSEQHW 58
Query: 555 I--LDILYCYEENSGVYECRATNKYGSDVTK--------------------------ASL 586
I L + ++G Y C+ + +++++ L
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQL 118
Query: 587 KCVSKTNLILESQLPE---VEWFYNGKKLPH-GHRYRTFHDFGIVILDILYCYEENSGVY 642
C + PE + W+ K+ + G+ S ++
Sbjct: 119 SCEAVGP-------PEPVTIVWWRGTTKIGGPAPSPSVLNVTGV----------TQSTMF 161
Query: 643 ECRATNKYGSDVTKA 657
C A N G ++
Sbjct: 162 SCEAHNLKGLASSRT 176
Score = 66.0 bits (161), Expect = 1e-12
Identities = 34/228 (14%), Positives = 64/228 (28%), Gaps = 58/228 (25%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
A + + + + QP+ L VE I+W+ +G ++ +
Sbjct: 1 AGLKLMGAPV-KLTVSQGQPVKLNCSVE--GMEEPDIQWVKDGAVVQNLDQLYIPVSEQH 57
Query: 124 V--TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
L L V D G Y C+ + S ++ + +
Sbjct: 58 WIGFLSLKSVERSDAGRYWCQVEDGGETE-ISQPVWLTVEG------------------- 97
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD-QTMTVEFL 240
P FT E + L + VG + +T+ +
Sbjct: 98 --------------------VPFFTVEPKDL-AVPPNAPFQLSCE--AVGPPEPVTIVWW 134
Query: 241 YNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288
I + VL + G + + +++C A N G A
Sbjct: 135 RGTTKIGGPAPSPS-------VLNVTG--VTQSTMFSCEAHNLKGLAS 173
Score = 50.6 bits (121), Expect = 3e-07
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 21/98 (21%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLT----PVTDPDLVVEWFYNGKKLPH-GHRYR 546
V P F + D+ + PVT + W+ K+
Sbjct: 95 VEGVPFFTVEPKDLA-VPPNAPFQLSCEAVGPPEPVT-----IVWWRGTTKIGGPAPSPS 148
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
+ G+ S ++ C A N G ++
Sbjct: 149 VLNVTGV----------TQSTMFSCEAHNLKGLASSRT 176
Score = 47.9 bits (114), Expect = 2e-06
Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
+ L+ +S+G+ S G + ++++ +G ++ ++ +
Sbjct: 2 GLKLMGAPVKLT-VSQGQPVKLNCS--VEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHW 58
Query: 751 V--LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
+ L + + D G Y C+ + IS + V
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDGGETE-ISQPVWLTVEGV 98
Score = 42.5 bits (100), Expect = 1e-04
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 13/92 (14%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
P F V K L EA P+ + I W +
Sbjct: 97 GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEP---VTIVWWRGTTKI-------GGPAPS 146
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
L++T V +++C A NL G + T
Sbjct: 147 PSVLNVTGV--TQSTMFSCEAHNLKGLASSRT 176
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 87.6 bits (216), Expect = 7e-20
Identities = 26/206 (12%), Positives = 60/206 (29%), Gaps = 29/206 (14%)
Query: 575 NKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 634
+ V L C +++ + WF +GK + + + G D
Sbjct: 15 YQEDGSVL---LTC--------DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD---- 59
Query: 635 YEENSGVYECRATNKYGSDVTKASLKCV---SKTNLILESQLPELRRQPAGVPDSEDGRP 691
G+Y+C+ + + +K + + + + G +E+
Sbjct: 60 ---PRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGG 116
Query: 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 751
T +S G P + + +N K I + + + +
Sbjct: 117 ITQTPYKVSIS----GTTVILTCPQYP----GSEILWQHNDKNIGGDEDDKNIGSDEDHL 168
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAE 777
+++E +G Y C +
Sbjct: 169 SLKEFSELEQSGYYVCYPRGSKPEDA 194
Score = 83.4 bits (205), Expect = 2e-18
Identities = 26/177 (14%), Positives = 44/177 (24%), Gaps = 24/177 (13%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA--- 287
+ + + +GK I + G + G+Y C+ + +
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD-------PRGMYQCKGSQNKSKPLQV 78
Query: 288 -----EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECT---------LTPVND 333
+ K S + G LT
Sbjct: 79 YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY 138
Query: 334 PELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFT 390
P ++ W HN K I K + + + + SG YVC ED
Sbjct: 139 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 195
Score = 82.6 bits (203), Expect = 4e-18
Identities = 21/195 (10%), Positives = 52/195 (26%), Gaps = 26/195 (13%)
Query: 94 NDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153
+ I W +GK + + K + G D +G+Y C+ +
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD-------PRGMYQCKGSQNKSKPLQV 78
Query: 154 TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLS 213
S ++ + + +++ + G + +
Sbjct: 79 YYRMGSADDAKKDAA--------KKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSI---- 126
Query: 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDT 273
G P + + +N K I + + + + +++E +
Sbjct: 127 ---SGTTVILTCPQYP----GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQS 179
Query: 274 GVYTCRATNKWGQAE 288
G Y C +
Sbjct: 180 GYYVCYPRGSKPEDA 194
Score = 73.4 bits (179), Expect = 6e-15
Identities = 26/197 (13%), Positives = 45/197 (22%), Gaps = 57/197 (28%)
Query: 504 DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYE 563
V +E S + WF +GK + + + G D
Sbjct: 11 KVYDYQEDGSVLLTCDA-----EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD------ 59
Query: 564 ENSGVYECRATNKYGSDVTKASLKC----------------------------------- 588
G+Y+C+ + +
Sbjct: 60 -PRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGIT 118
Query: 589 -------VSKTNLILE---SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 638
+S T +IL E+ W +N K + + + + E
Sbjct: 119 QTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQ 178
Query: 639 SGVYECRATNKYGSDVT 655
SG Y C D
Sbjct: 179 SGYYVCYPRGSKPEDAN 195
Score = 62.6 bits (151), Expect = 3e-11
Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 9/146 (6%)
Query: 14 SGTLKCLGQKDI--YLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEETFAKPVFIVP 71
G +C G ++ L+ + MG+A K + A K + G + + I
Sbjct: 61 RGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDG-SDGNEEMGGITQ 119
Query: 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEV 131
+ + + L P ++ I W N K + K
Sbjct: 120 TPYKVSI-SGTTVILTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFS 174
Query: 132 YDRDQGIYTCRAWNLAGETFTSTTIY 157
G Y C E + +Y
Sbjct: 175 ELEQSGYYVCYPRGSKPED-ANFYLY 199
Score = 57.6 bits (138), Expect = 2e-09
Identities = 17/116 (14%), Positives = 27/116 (23%), Gaps = 10/116 (8%)
Query: 477 FFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE----------ARLTPVTDP 526
+ AA +A K + +E LT P
Sbjct: 80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYP 139
Query: 527 DLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 582
+ W +N K + + + + E SG Y C D
Sbjct: 140 GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 195
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 86.9 bits (215), Expect = 1e-19
Identities = 28/206 (13%), Positives = 57/206 (27%), Gaps = 36/206 (17%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
F +++ + G + V + V +L +G+ +E + +T G
Sbjct: 2 ESPFVGNPGNIT-GARGLTGTLRCQ-LQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 262 ---------VLEILGTKIEDTGVYTCRATNKWGQ-----AEISVNLECVDKSKGQPPKFT 307
L I ++ DTG Y C + + P F
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE---------GLPYFL 110
Query: 308 SHIKSLEGLKDGDSAHFECTLTPVNDPE-LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDI 366
+ + + C PE + + W + P+ + +
Sbjct: 111 EEPEDRT-VAANTPFNLSC--QAQGPPEPVDLLWLQDAVPLATAPGHGPQR-----SLHV 162
Query: 367 AYVQSHDSGEYVCRAWNKYGEDFTRA 392
+ + + C A N G +R
Sbjct: 163 PGLN--KTSSFSCEAHNAKGVTTSRT 186
Score = 77.2 bits (190), Expect = 2e-16
Identities = 33/294 (11%), Positives = 68/294 (23%), Gaps = 115/294 (39%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+ F + ++ G + G + C L V +V W +G+ + + + G
Sbjct: 1 EESPFVGNPGNITGAR-GLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGE 58
Query: 362 VVMD---------IAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESL 412
D I +Q D+G+Y C + + ++
Sbjct: 59 DEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQP-------------------- 98
Query: 413 ARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCE 472
+ + P F+ + D T + + C+
Sbjct: 99 GYVG----------------LEGLPYFLEEPEDRT-VAANTPFNLS------------CQ 129
Query: 473 LFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW 532
AQ P P + W
Sbjct: 130 --------------AQGPP---EPVDLL-------------------------------W 141
Query: 533 FYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ L + + L + + C A N G ++ +
Sbjct: 142 LQDAVPLATAPGHGPQRSLHVPGL-------NKTSSFSCEAHNAKGVTTSRTAT 188
Score = 69.2 bits (169), Expect = 1e-13
Identities = 30/197 (15%), Positives = 55/197 (27%), Gaps = 40/197 (20%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
E F+ ++T G + +L V V W +G+ L +T G
Sbjct: 1 EESPFVGNPGNIT-GARGLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGE 58
Query: 554 V---------ILDILYCYEENSGVYECRATNKYGSDVTKA----------------SLKC 588
L I ++G Y+C + + V++
Sbjct: 59 DEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTV 118
Query: 589 VSKTNLILESQ---LPE---VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
+ T L Q PE + W + L + + L + +
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGL-------NKTSSF 171
Query: 643 ECRATNKYGSDVTKASL 659
C A N G ++ +
Sbjct: 172 SCEAHNAKGVTTSRTAT 188
Score = 68.0 bits (166), Expect = 4e-13
Identities = 29/188 (15%), Positives = 56/188 (29%), Gaps = 48/188 (25%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIV---------ILDILYCYEENSGVYECRATNKYG 651
PEV W +G+ L +T G L I ++G Y+C +
Sbjct: 33 PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ 92
Query: 652 SDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 711
+ V++ + LE P F E + ++ +
Sbjct: 93 TFVSQ-------PGYVGLEG-------------------LPYFLEEPEDR-TVAANTPFN 125
Query: 712 F--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769
+A P + + + +L + P+ + L + + T ++C A
Sbjct: 126 LSCQAQGPP---EPVDLLWLQDAVPLATAPGHGPQR-----SLHV--PGLNKTSSFSCEA 175
Query: 770 TNKWGQAE 777
N G
Sbjct: 176 HNAKGVTT 183
Score = 63.0 bits (153), Expect = 2e-11
Identities = 34/235 (14%), Positives = 65/235 (27%), Gaps = 66/235 (28%)
Query: 66 PVFIVPLKPEFKLGEA-QPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
F+ P G L Q++ + +P ++ W+ +G+ LEL +T G
Sbjct: 3 SPFVG--NPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGED 59
Query: 125 ---------TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEE 175
L +T + D G Y C + S Y +
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTF-VSQPGYVGLEG------------- 105
Query: 176 GLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQ 233
P F E + ++ + +A P +
Sbjct: 106 --------------------------LPYFLEEPEDR-TVAANTPFNLSCQAQGPP---E 135
Query: 234 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288
+ + +L + P+ + L + + T ++C A N G
Sbjct: 136 PVDLLWLQDAVPLATAPGHGPQR-----SLHV--PGLNKTSSFSCEAHNAKGVTT 183
Score = 48.7 bits (116), Expect = 1e-06
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 11/96 (11%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
F +++ + G + V + V +L +G+ +E + +T G
Sbjct: 2 ESPFVGNPGNIT-GARGLTGTLRCQ-LQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 751 ---------VLEILGTKIEDTGVYTCRATNKWGQAE 777
L I ++ DTG Y C
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFV 95
Score = 43.0 bits (101), Expect = 1e-04
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 11/93 (11%)
Query: 63 FAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
P F+ + L +AQ P+ + + W+ + PL
Sbjct: 104 EGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEP---VDLLWLQDAVPLATAPG------- 153
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
L ++C A N G T + T
Sbjct: 154 HGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRT 186
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 82.8 bits (205), Expect = 2e-19
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 297 DKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356
+G PP F + + + G A +C + +P V W G+ + R+
Sbjct: 7 SGDQGSPPCFLRFPRPVRVV-SGAEAELKCVVL--GEPPPVVVWEKGGQQLAASERLSFP 63
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+D + + D+G YVCRA N GE + A +
Sbjct: 64 ADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Score = 82.0 bits (203), Expect = 5e-19
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRY 545
A + P F+ V + G A + V +P VV W G++L R
Sbjct: 5 ASSGDQGSPPCFLRFPRPVR-VVSGAEAELKCV---VLGEPPPVVVWEKGGQQLAASERL 60
Query: 546 RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
D L + ++GVY CRA N G A++
Sbjct: 61 SFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Score = 75.1 bits (185), Expect = 1e-16
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 191 PAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA 248
P + G PP F + + G A + + +G+ V + G+ + A
Sbjct: 2 PMKASSGDQGSPPCFL---RFPRPVRVVSGAEAELKCVV--LGEPPPVVVWEKGGQQLAA 56
Query: 249 SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
S R+ L + D GVY CRA N G+A + +
Sbjct: 57 SERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Score = 75.1 bits (185), Expect = 1e-16
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 680 PAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA 737
P + G PP F + + G A + + +G+ V + G+ + A
Sbjct: 2 PMKASSGDQGSPPCFL---RFPRPVRVVSGAEAELKCVV--LGEPPPVVVWEKGGQQLAA 56
Query: 738 SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
S R+ L + D GVY CRA N G+A + +
Sbjct: 57 SERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Score = 74.7 bits (184), Expect = 2e-16
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Query: 55 QPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR 114
+ + + P F+ +P ++ L+ V +P + W G+ L R
Sbjct: 3 MKASSGDQGSPPCFLRFPRP-VRVVSGAEAELKCVVL--GEPPPVVVWEKGGQQLAASER 59
Query: 115 FKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
AD L LT D G+Y CRA N AGE + + +
Sbjct: 60 LSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV 101
Score = 65.1 bits (159), Expect = 4e-13
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P V W G++L R D L + ++GVY CRA N G A++
Sbjct: 43 PVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Score = 30.0 bits (68), Expect = 0.79
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 428 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLT 462
A + P F+ V + G A + +
Sbjct: 5 ASSGDQGSPPCFLRFPRPVR-VVSGAEAELKCVVL 38
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 89.1 bits (220), Expect = 3e-19
Identities = 46/311 (14%), Positives = 85/311 (27%), Gaps = 63/311 (20%)
Query: 509 KEGQSAHFEARLTP-------VTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 561
G+ + D D VV W GK +R + + I +
Sbjct: 42 ALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR--RVKNGDLWIANYTS- 98
Query: 562 YEENSGVYECRATNKYGSDVTKASLKCVSKTNLILE----------------------SQ 599
++ Y C T K G V + K +
Sbjct: 99 -NDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKH 157
Query: 600 LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+ W+ N ++L + ++I + E+SG Y+C
Sbjct: 158 YNNITWYKNNQELIIDGTKYSQSGQNLIIHNP---ELEDSGRYDCYVHYDDVR------- 207
Query: 660 KCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLI 717
N I+ S+ L P+ + P+ N++ GE A+ A
Sbjct: 208 ----IKNDIVVSRCKILTVIPSQDHRFKLILDPK--------INVTIGEPANITCTAVST 255
Query: 718 PVGDQTMTVEFLYNGKPIEAS-----HRIRTVHAFGMVVLEILGTKIEDTG-VYTCRATN 771
+ + +++ I + + L E G YTCR N
Sbjct: 256 SLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHN 315
Query: 772 KWGQAEISVNL 782
+ ++ +
Sbjct: 316 YYFDKTLTTTV 326
Score = 88.7 bits (219), Expect = 3e-19
Identities = 41/315 (13%), Positives = 79/315 (25%), Gaps = 60/315 (19%)
Query: 92 PKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151
ND + + W GK +R G + + D Y C G+
Sbjct: 62 RYNDKDNVVNWEKIGKTRRPLNRRVKN---GDLWIANYTSND-SHRRYLCTVTTKNGDCV 117
Query: 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
+ PP E
Sbjct: 118 QGIV------------------------------RSHIRK----------PPSCIPETYE 137
Query: 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 271
L + I + + N + + + + L I ++E
Sbjct: 138 LG-THDKYGIDLY-CGILYAKHYNNITWYKNNQELIIDGT-KYSQSGQN--LIIHNPELE 192
Query: 272 DTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLE---GLKDGDSAHFEC-- 326
D+G Y C + + + + P + L+ + G+ A+ C
Sbjct: 193 DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTA 252
Query: 327 TLTPVNDPELKVEWFHNGKPI--FHKNRVKMVSDFGFVVMD---IAYVQSHDSGE-YVCR 380
T + ++ ++W + I +++ G + V G Y CR
Sbjct: 253 VSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCR 312
Query: 381 AWNKYGEDFTRATIK 395
N Y + T+
Sbjct: 313 GHNYYFDKTLTTTVV 327
Score = 76.0 bits (186), Expect = 5e-15
Identities = 39/328 (11%), Positives = 67/328 (20%), Gaps = 92/328 (28%)
Query: 262 VLEILGTKIEDTG-VYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGD 320
L I D+ Y C T K G + + K PP L D
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK----PPSCIPETYELG-THDKY 144
Query: 321 SAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCR 380
C + + W+ N + + K ++ I + DSG Y C
Sbjct: 145 GIDLYCGILY-AKHYNNITWYKNNQELIIDGT-KYSQSGQNLI--IHNPELEDSGRYDCY 200
Query: 381 AWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFI 440
R + + ++ +F
Sbjct: 201 VHYDDV-----------------------------RIKNDIVVSRCKILTVIPSQDHRFK 231
Query: 441 TQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFIT 500
+ + G+ A+ C A + + I
Sbjct: 232 LILDPKINVTIGEPANIT------------CT--------------AVSTSLLVDDVLID 265
Query: 501 QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILY 560
+ + + + L
Sbjct: 266 WENPSGWIIGLDFGVY--------------------------SILTSSGGITEATLYFEN 299
Query: 561 CYEENSG-VYECRATNKYGSDVTKASLK 587
EE G Y CR N Y ++
Sbjct: 300 VTEEYIGNTYTCRGHNYYFDKTLTTTVV 327
Score = 72.2 bits (176), Expect = 1e-13
Identities = 32/240 (13%), Positives = 57/240 (23%), Gaps = 45/240 (18%)
Query: 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
KP +P E + + L + I W N + L + K +
Sbjct: 124 HIRKPPSCIPETYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQELIIDGT-KYSQSG 181
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
L + D G Y C + ++I H
Sbjct: 182 Q--NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHR---------- 229
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEF 239
F N++ GE A+ A + + +++
Sbjct: 230 -----------------------FKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDW 266
Query: 240 LYNGKPIEAS-----HRIRTVHAFGMVVLEILGTKIEDTG-VYTCRATNKWGQAEISVNL 293
I + + L E G YTCR N + ++ +
Sbjct: 267 ENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Score = 69.5 bits (169), Expect = 9e-13
Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 46/209 (22%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
+ + P I + ++ + + + W+ N ++L +
Sbjct: 125 IRKPPSCIPETYELG-THDKYGIDLYCGILY-AKHYNNITWYKNNQELIIDGTKYSQSGQ 182
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVT----------------------------- 582
++I + E+SG Y+C
Sbjct: 183 NLIIHNP---ELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKIN 239
Query: 583 -----KASLKCVSKTNLILESQLPEVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCY 635
A++ C + + +L ++W + Y G + LY
Sbjct: 240 VTIGEPANITCTAVSTSLLVDD-VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFE 298
Query: 636 ---EENSG-VYECRATNKYGSDVTKASLK 660
EE G Y CR N Y ++
Sbjct: 299 NVTEEYIGNTYTCRGHNYYFDKTLTTTVV 327
Score = 52.9 bits (126), Expect = 2e-07
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 6/119 (5%)
Query: 44 VEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWI 103
+++ + + + + I+ K +GE + A ++ I+W
Sbjct: 208 IKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWE 267
Query: 104 FNGKPLELG-----SRFKTTADFGFVTLDLTEVYDRDQG-IYTCRAWNLAGETFTSTTI 156
+ S ++ TL V + G YTCR N + +TT+
Sbjct: 268 NPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Score = 30.2 bits (67), Expect = 2.6
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 751 VLEILGTKIEDTG-VYTCRATNKWGQAEISVNLECVVWSPS 790
L I D+ Y C T K G + + PS
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPS 130
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 87.3 bits (216), Expect = 3e-19
Identities = 52/328 (15%), Positives = 81/328 (24%), Gaps = 87/328 (26%)
Query: 65 KPVFIV-PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
K V + P E + L +V + +W NG + +
Sbjct: 1 KAVITLQPPWVSVFQEE--TVTLHCEVLHLPGSS-STQWFLNGTATQTSTP--------- 48
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+ +T D G Y C+ + S I +
Sbjct: 49 -SYRITSASVNDSGEYRCQRGL----SGRSDPIQL----------------------EIH 81
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
L Q +EGE V + NG
Sbjct: 82 RGWLLLQV---SSRV----------------FTEGEPLALRCH-AWKDKLVYNVLYYRNG 121
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQP 303
K + H L IL T I G Y C K +++ V K
Sbjct: 122 KAFKFFHWNSN--------LTILKTNISHNGTYHCSGMGKHRYTSAGISVT-V---KELF 169
Query: 304 PKFTSHIKSLEGLKDGDSAHFEC--TLTPVN-DPELKVEWFHNGKPI--FHKNRVKMVSD 358
P + L +G+ C L +L ++ K + + +
Sbjct: 170 PAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS------ 223
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
I + DSG Y C A + G
Sbjct: 224 ----EYQILTARREDSGLYWCEAATEDG 247
Score = 81.1 bits (200), Expect = 4e-17
Identities = 45/307 (14%), Positives = 78/307 (25%), Gaps = 83/307 (27%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
Q V+ + ++ + + +WF NG
Sbjct: 2 AVITLQPPWVSVF-QEETVTLHCEVLHLPGS-SSTQWFLNGTATQTSTP----------S 49
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTK----------------------ASLKCVSKTN 593
I +SG Y C+ SD + +L+C + +
Sbjct: 50 YRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKD 109
Query: 594 LILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 653
+ V ++ NGK H IL ++G Y C K+
Sbjct: 110 ----KLVYNVLYYRNGKAFKFFHWNSNLT-----ILKTN---ISHNGTYHCSGMGKHRY- 156
Query: 654 VTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF- 712
S + +L P + L EG +
Sbjct: 157 --------TSAGISVTVKELF---------------PAPVLNASVTSP--LLEGNLVTLS 191
Query: 713 -EASLIPV-GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770
E L+ + F K + + +IL + ED+G+Y C A
Sbjct: 192 CETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE--------YQILTARREDSGLYWCEAA 243
Query: 771 NKWGQAE 777
+ G
Sbjct: 244 TEDGNVL 250
Score = 75.7 bits (186), Expect = 2e-15
Identities = 27/182 (14%), Positives = 50/182 (27%), Gaps = 37/182 (20%)
Query: 217 EGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG 274
+ E E +P + + ++ NG + S I + D+G
Sbjct: 15 QEETVTLHCEVLHLP---GSSSTQWFLNGTATQTSTP----------SYRITSASVNDSG 61
Query: 275 VYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP 334
Y C+ I + + + S +G+ C +
Sbjct: 62 EYRCQRGLSGRSDPIQLEI--------HRGWLLLQVSSRV-FTEGEPLALRCH-AWKDKL 111
Query: 335 ELKVEWFHNGKPI--FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRA 392
V ++ NGK FH N + I +G Y C K+
Sbjct: 112 VYNVLYYRNGKAFKFFHWNSN----------LTILKTNISHNGTYHCSGMGKHRYTSAGI 161
Query: 393 TI 394
++
Sbjct: 162 SV 163
Score = 64.9 bits (158), Expect = 1e-11
Identities = 36/205 (17%), Positives = 46/205 (22%), Gaps = 57/205 (27%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
VT L C +WF NG I
Sbjct: 16 EETVT---LHCEVLHL----PGSSSTQWFLNGTATQTSTP----------SYRITSASVN 58
Query: 638 NSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE 697
+SG Y C+ SD + LE L Q
Sbjct: 59 DSGEYRCQRGLSGRSDP------------IQLEIHRGWLLLQV---SSRV---------- 93
Query: 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT 757
+EGE V + NGK + H L IL T
Sbjct: 94 ------FTEGEPLALRCH-AWKDKLVYNVLYYRNGKAFKFFHWNSN--------LTILKT 138
Query: 758 KIEDTGVYTCRATNKWGQAEISVNL 782
I G Y C K +++
Sbjct: 139 NISHNGTYHCSGMGKHRYTSAGISV 163
Score = 62.6 bits (152), Expect = 7e-11
Identities = 38/248 (15%), Positives = 66/248 (26%), Gaps = 65/248 (26%)
Query: 49 AGKY--QRQPSGPEETFAKPVFIVPLKPEFK---LGEAQPLHLEAQVEPKNDPNLKIEWI 103
+G+Y QR SG + + L + E +PL L K+ + +
Sbjct: 60 SGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHA-WKDKLVYNVLYY 118
Query: 104 FNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKES 163
NGK + L + + G Y C T ++
Sbjct: 119 RNGKAFKFFHWNSN--------LTILKTNISHNGTYHCSGMGKHRYTSAGISV------- 163
Query: 164 LIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 223
+++L P + L EG +
Sbjct: 164 ---------------TVKELF----------------PAPVLNASVTSP--LLEGNLVTL 190
Query: 224 --EASLIPV-GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 280
E L+ + F K + + +IL + ED+G+Y C A
Sbjct: 191 SCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE--------YQILTARREDSGLYWCEA 242
Query: 281 TNKWGQAE 288
+ G
Sbjct: 243 ATEDGNVL 250
Score = 61.9 bits (150), Expect = 1e-10
Identities = 43/281 (15%), Positives = 78/281 (27%), Gaps = 53/281 (18%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
++ C + + +WF NG I +DSGEY
Sbjct: 16 EETVTLHCEVLHLPGSS-STQWFLNGTATQTSTPS----------YRITSASVNDSGEYR 64
Query: 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPK 438
C+ D + L+ + L ++ +G+ + +
Sbjct: 65 CQRGLSGRSD------------PIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKL- 111
Query: 439 FITQISDVTQLKEGQSAHFEA-----RLTPVTDPDL---VCELFSNFFPSQGQQPVAQAA 490
+ +V + G++ F + C +
Sbjct: 112 ----VYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMG----KHRYTSAGISV 163
Query: 491 PVAEAP-KFITQISDVTQLKEGQSAHF--EARLTPVT-DPDLVVEWFYNGKKLPHGHRYR 546
V E + S + L EG E +L L ++ K L +
Sbjct: 164 TVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS 223
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ IL E+SG+Y C A + G+ V K S +
Sbjct: 224 EYQ-----ILTAR---REDSGLYWCEAATEDGN-VLKRSPE 255
Score = 58.8 bits (142), Expect = 1e-09
Identities = 34/186 (18%), Positives = 51/186 (27%), Gaps = 34/186 (18%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
+ Q+S EG+ V ++ NGK H I
Sbjct: 83 GWLLLQVSSRV-FTEGEPLALRCH-AWKDKLVYNVLYYRNGKAFKFFHWNSNLT-----I 135
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLK----------CVSKTNLILE-------- 597
L ++G Y C K+ S+ S T+ +LE
Sbjct: 136 LKTN---ISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSC 192
Query: 598 ---SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 654
L R + IL E+SG+Y C A + G+ V
Sbjct: 193 ETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS--EYQILTARREDSGLYWCEAATEDGN-V 249
Query: 655 TKASLK 660
K S +
Sbjct: 250 LKRSPE 255
Score = 35.7 bits (82), Expect = 0.038
Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 37/107 (34%)
Query: 706 EGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG 763
+ E E +P + + ++ NG + S I + D+G
Sbjct: 15 QEETVTLHCEVLHLP---GSSSTQWFLNGTATQTSTP----------SYRITSASVNDSG 61
Query: 764 VYTCRATNKWGQAEI----------------------SVNLECVVWS 788
Y C+ I + L C W
Sbjct: 62 EYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWK 108
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 85.8 bits (212), Expect = 4e-19
Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 232 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
+ T YN + T + G + +D G YTC + + GQ V
Sbjct: 39 QGSTTALVCYNSQITAPYADRVTFSSSG---ITFSSVTRKDNGEYTCMVSEEGGQNYGEV 95
Query: 292 NLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN 351
++ PP + + G+ A C+ P + WF +G + +
Sbjct: 96 SIHLTVLV---PPSKPTISVPSS-VTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTAD 150
Query: 352 RVKMVSDFGFVVMD--------IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
K + V + DSGEY C+A N YG
Sbjct: 151 AKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202
Score = 74.6 bits (183), Expect = 3e-15
Identities = 37/234 (15%), Positives = 61/234 (26%), Gaps = 57/234 (24%)
Query: 576 KYGSDVTKASLKCVSKTNLILESQLPEVEW-----------FYNGKKLPHGHRYRTFHDF 624
+ L C P VEW YN + TF
Sbjct: 14 PENESIK---LTCTYSGFSS-----PRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSS 65
Query: 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVP 684
GI + +++G Y C + + G + + S+ L +P
Sbjct: 66 GITFSSVT---RKDNGEYTCMVSEEGGQNYGEVSIH--------LTVLVP---------- 104
Query: 685 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 744
P + S ++ G A S G + +G + + +T
Sbjct: 105 -------PSKPTISVPSS-VTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTADAKKTR 155
Query: 745 HAFGMVV--------LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790
L D+G Y C+A N +G A S +
Sbjct: 156 AFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELN 209
Score = 73.1 bits (179), Expect = 8e-15
Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 44/205 (21%)
Query: 496 PKFITQISDVTQLKEGQSAHFE--ARLTPV-------TDPDLVVEWFYNGKKLPHGHRYR 546
T SDV + E +S YN +
Sbjct: 2 GSVYTAQSDVQ-VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK-----------CVSKTNLI 595
TF GI + +++G Y C + + G + + S+ +++
Sbjct: 61 TFSSSGITFSSVT---RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVT 117
Query: 596 LESQL------------PEVEWFYNGKKLPHG--HRYRTFHDFGIVI------LDILYCY 635
+ ++ E WF +G + + R F + I L
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177
Query: 636 EENSGVYECRATNKYGSDVTKASLK 660
+SG Y C+A N YG+ + +
Sbjct: 178 AFDSGEYYCQAQNGYGTAMRSEAAH 202
Score = 61.5 bits (149), Expect = 7e-11
Identities = 35/247 (14%), Positives = 63/247 (25%), Gaps = 62/247 (25%)
Query: 65 KPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPL-------ELGSRF 115
K + E+ L + ++EW F G ++ + +
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYS----GFSSPRVEWKFVQGSTTALVCYNSQITAPY 56
Query: 116 KTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEE 175
F + + V +D G YTC G+ + +I+ +
Sbjct: 57 ADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV------------- 103
Query: 176 GLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM 235
PP + S ++ G A S G
Sbjct: 104 --------------------------PPSKPTISVPSS-VTIGNRAVLTCS-EHDGSPPS 135
Query: 236 TVEFLYNGKPIEASHRIRTVHAFGMVV--------LEILGTKIEDTGVYTCRATNKWGQA 287
+ +G + + +T L D+G Y C+A N +G A
Sbjct: 136 EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA 195
Query: 288 EISVNLE 294
S
Sbjct: 196 MRSEAAH 202
Score = 50.7 bits (121), Expect = 4e-07
Identities = 20/103 (19%), Positives = 26/103 (25%), Gaps = 10/103 (9%)
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
P P + L E P + W +G + KT A
Sbjct: 102 LVPPSKPTISVPS-SVTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159
Query: 123 FV--------TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L V D G Y C+A N G S +
Sbjct: 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202
Score = 49.2 bits (117), Expect = 1e-06
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 10/104 (9%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTFH 549
V P T + + G A P WF +G + + R F
Sbjct: 101 VLVPPSKPTISVPSS-VTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTADAKKTRAFM 158
Query: 550 DFGIVI------LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ I L +SG Y C+A N YG+ + +
Sbjct: 159 NSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 82.4 bits (204), Expect = 4e-19
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV- 356
S G P F L +++G +C ++ P + W +GKP+ + KM+
Sbjct: 4 GSSGFRPHFLQAPGDLT-VQEGKLCRMDCKVS--GLPTPDLSWQLDGKPVRPDSAHKMLV 60
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ G + I V S D+G Y C A N+ G++ +
Sbjct: 61 RENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
Score = 73.2 bits (180), Expect = 8e-16
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYR-TFH 549
P F+ D+T ++EG+ + + V+ P + W +GK + ++
Sbjct: 6 SGFRPHFLQAPGDLT-VQEGKLCRMDCK---VSGLPTPDLSWQLDGKPVRPDSAHKMLVR 61
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ G+ L I ++G+Y C ATN+ G + L
Sbjct: 62 ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
Score = 70.5 bits (173), Expect = 6e-15
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 682 GVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH 739
G S G P F Q +L+ EG++ + + G T + + +GKP+
Sbjct: 1 GSSGSS-GFRPHFL---QAPGDLTVQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDS 54
Query: 740 RIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790
+ + G+ L I D G+YTC ATN+ GQ S+ L V S
Sbjct: 55 AHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV-VAAKES 105
Score = 69.7 bits (171), Expect = 1e-14
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 193 GVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH 250
G S G P F Q +L+ EG++ + + G T + + +GKP+
Sbjct: 1 GSSGSS-GFRPHFL---QAPGDLTVQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDS 54
Query: 251 RIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
+ + G+ L I D G+YTC ATN+ GQ S+ L V + P
Sbjct: 55 AHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV-VAAKESGPS 108
Score = 67.0 bits (164), Expect = 1e-13
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-T 117
+ +P F+ + E + ++ +V P + W +GKP+ S K
Sbjct: 3 SGSSGFRPHFLQAPGD-LTVQEGKLCRMDCKVS--GLPTPDLSWQLDGKPVRPDSAHKML 59
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKES 163
+ G +L + V RD GIYTC A N AG+ S + + KES
Sbjct: 60 VRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
Score = 60.5 bits (147), Expect = 2e-11
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P++ W +GK + ++ + G+ L I ++G+Y C ATN+ G + L
Sbjct: 39 PDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
Query: 660 K 660
Sbjct: 99 V 99
Score = 28.1 bits (63), Expect = 4.9
Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 433 VAEAPKFITQISDVTQLKEGQSAHFEARLT 462
P F+ D+T ++EG+ + +++
Sbjct: 6 SGFRPHFLQAPGDLT-VQEGKLCRMDCKVS 34
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 81.6 bits (202), Expect = 7e-19
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P +F +K LE + +G +A C L+ V P V+W + + ++ + + +
Sbjct: 8 PVRFQEALKDLE-VLEGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDKYSLRQEGAML 63
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + ++ DSG Y C G+ T AT+
Sbjct: 64 ELVVRNLRPQDSGRYSCSF----GDQTTSATL 91
Score = 74.7 bits (184), Expect = 2e-16
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 489 AAPVAEAP-KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT 547
+ + P +F + D+ + EG +A ++ V+W Y L G +Y
Sbjct: 1 GSSGSSGPVRFQEALKDLE-VLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSL 56
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ ++ L + ++SG Y C G T A+L
Sbjct: 57 RQEGAMLELVVRNLRPQDSGRYSCSF----GDQTTSATL 91
Score = 68.5 bits (168), Expect = 3e-14
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 197 SEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 254
S P +F + L +L EG A + V++ Y + +
Sbjct: 3 SGSSGPVRFQ---EALKDLEVLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSL 56
Query: 255 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS 308
M+ L + + +D+G Y+C ++ A ++V P +S
Sbjct: 57 RQEGAMLELVVRNLRPQDSGRYSCSFGDQTTSATLTV--------TALPSGPSS 102
Score = 67.0 bits (164), Expect = 1e-13
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 686 SEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 743
S P +F + L +L EG A + V++ Y + +
Sbjct: 3 SGSSGPVRFQ---EALKDLEVLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSL 56
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
M+ L + + +D+G Y+C ++ A ++V
Sbjct: 57 RQEGAMLELVVRNLRPQDSGRYSCSFGDQTTSATLTVT 94
Score = 64.3 bits (157), Expect = 7e-13
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + F LK ++ E L + P ++W + L G ++
Sbjct: 1 GSSGSSGPVRFQEALKD-LEVLEGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDKYSL 56
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+ + L + + +D G Y+C G+ TS T+
Sbjct: 57 RQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTSATLT 92
Score = 54.6 bits (132), Expect = 2e-09
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
A+L+CV L S V+W Y L G +Y + ++ L + ++SG Y
Sbjct: 25 AATLRCV------LSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRY 78
Query: 643 ECRATNKYGSDVTKASL 659
C G T A+L
Sbjct: 79 SCSF----GDQTTSATL 91
Score = 30.4 bits (69), Expect = 0.68
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 430 AAPVAEAP-KFITQISDVTQLKEGQSAHFEARLTPVTDP 467
+ + P +F + D+ + EG +A L+ V P
Sbjct: 1 GSSGSSGPVRFQEALKDLE-VLEGGAATLRCVLSSVAAP 38
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 81.2 bits (201), Expect = 8e-19
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH-KNRVKMVSDFGF 361
PP F + +++G + +P+ V W N +P+ + R ++ G
Sbjct: 5 PPTFKVSLMDQS-VREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+ I + D+G Y C+A N+YG A ++ G+
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 80.8 bits (200), Expect = 1e-18
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKL-PHGHRYRTFHDF 551
P F + D + ++EGQ R V +P VV W N + + P R+ +
Sbjct: 4 APPTFKVSLMDQS-VREGQDVIMSIR---VQGEPKPVVSWLRNRQPVRPDQRRFAEEAEG 59
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
G+ L IL ++G Y C+A N+YG+ +A L+
Sbjct: 60 GLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
Score = 69.6 bits (171), Expect = 1e-14
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 201 RPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHA 257
PP F L + S EG+ + G+ V +L N +P+ R
Sbjct: 4 APPTFK---VSLMDQSVREGQDVIMSIRV--QGEPKPVVSWLRNRQPVRPDQRRFAEEAE 58
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
G+ L IL + D G YTC+A N++G + LE
Sbjct: 59 GGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
Score = 69.6 bits (171), Expect = 1e-14
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 690 RPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHA 746
PP F L + S EG+ + G+ V +L N +P+ R
Sbjct: 4 APPTFK---VSLMDQSVREGQDVIMSIRV--QGEPKPVVSWLRNRQPVRPDQRRFAEEAE 58
Query: 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
G+ L IL + D G YTC+A N++G + LE
Sbjct: 59 GGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
Score = 68.8 bits (169), Expect = 2e-14
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS-RFKTTADFG 122
A P F V L + E Q + + +V+ +P + W+ N +P+ RF A+ G
Sbjct: 4 APPTFKVSLMD-QSVREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + D G YTC+A N G +
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
Score = 67.3 bits (165), Expect = 7e-14
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 601 PEVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P V W N + + P R+ + G+ L IL ++G Y C+A N+YG+ +A L
Sbjct: 35 PVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
Query: 660 K 660
+
Sbjct: 95 E 95
Score = 27.2 bits (61), Expect = 7.6
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 1 MVKATNSKGSATTSGTLKCLGQ 22
KA N G+ L+ G+
Sbjct: 78 TCKAVNEYGARQCEARLEVRGE 99
Score = 26.9 bits (60), Expect = 9.4
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 435 EAPKFITQISDVTQLKEGQSAHFEARLT 462
P F + D + ++EGQ R+
Sbjct: 4 APPTFKVSLMDQS-VREGQDVIMSIRVQ 30
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 81.3 bits (201), Expect = 9e-19
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P +FT +K+ E +G +A +C L+ VEW + + R + D
Sbjct: 8 PARFTQDLKTKE-ASEGATATLQCELSK--VAP--VEWKKGPETLRDGGRYSLKQDGTRC 62
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPES 411
+ I + D+GEY C G++ T AT+ + + P S
Sbjct: 63 ELQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGPSS 107
Score = 72.4 bits (178), Expect = 1e-15
Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 9/110 (8%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ +F + EG +A + L+ V VEW + L G RY D
Sbjct: 6 SGPARFTQDLKTKE-ASEGATATLQCELSKVAP----VEWKKGPETLRDGGRYSLKQDGT 60
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPE 602
L I ++G Y C G + T A+L + E P
Sbjct: 61 RCELQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGPS 106
Score = 70.9 bits (174), Expect = 5e-15
Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 13/119 (10%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
S P +FT + + SEG A + L V VE+ + + R
Sbjct: 3 SGSSGPARFTQDLKTKE-ASEGATATLQCELSKVA----PVEWKKGPETLRDGGRYSLKQ 57
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEG 315
L+I + D G Y+C + A ++V + P +FT G
Sbjct: 58 DGTRCELQIHDLSVADAGEYSCMCGQERTSATLTV--------RALPARFTEGSGPSSG 108
Score = 65.9 bits (161), Expect = 3e-13
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
S P +FT + + SEG A + L V VE+ + + R
Sbjct: 3 SGSSGPARFTQDLKTKE-ASEGATATLQCELSKVA----PVEWKKGPETLRDGGRYSLKQ 57
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
L+I + D G Y+C + A ++V
Sbjct: 58 DGTRCELQIHDLSVADAGEYSCMCGQERTSATLTVR 93
Score = 60.1 bits (146), Expect = 2e-11
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + F LK + + E L+ ++ +EW + L G R+
Sbjct: 1 GSSGSSGPARFTQDLKTK-EASEGATATLQCELSK--VA--PVEWKKGPETLRDGGRYSL 55
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPK 172
D L + ++ D G Y+C G+ TS T+ + P
Sbjct: 56 KQDGTRCELQIHDLSVADAGEYSCM----CGQERTSATLTVRALPARFTEGSGPS 106
Score = 55.8 bits (135), Expect = 8e-10
Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 13/94 (13%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
A+L+C +SK VEW + L G RY D L I ++G
Sbjct: 25 TATLQCELSKV--------APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGE 76
Query: 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPE 675
Y C G + T A+L + E P
Sbjct: 77 YSCMC----GQERTSATLTVRALPARFTEGSGPS 106
Score = 31.2 bits (71), Expect = 0.33
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 434 AEAPKFITQISDVTQLKEGQSAHFEARLTP 463
+ +F + EG +A + L+
Sbjct: 6 SGPARFTQDLKTKE-ASEGATATLQCELSK 34
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 81.2 bits (201), Expect = 1e-18
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 3/101 (2%)
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
S P+ + + ++ G+S +T + W K I +K+ +
Sbjct: 3 SGSSGPQIIQFPEDQK-VRAGESVELFGKVTG--TQPITCTWMKFRKQIQESEHMKVENS 59
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+ I + G Y NK G + + K
Sbjct: 60 ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
Score = 75.4 bits (186), Expect = 1e-16
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF 548
+ + P+ I D ++ G+S ++T + W K++ +
Sbjct: 1 GSSGSSGPQIIQFPEDQK-VRAGESVELFGKVTG--TQPITCTWMKFRKQIQESEHMKVE 57
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
+ L IL +E+ G Y NK GS + +L V K
Sbjct: 58 NSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
Score = 73.9 bits (182), Expect = 5e-16
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 8/115 (6%)
Query: 193 GVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI 252
G S PQ + + GE + G Q +T ++ K I+ S +
Sbjct: 1 GSSGSS---GPQIIQFPEDQK-VRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHM 54
Query: 253 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFT 307
+ ++ L IL + E G YT NK G + VNL VD K PP T
Sbjct: 55 KVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD--KPDPPAGT 107
Score = 68.9 bits (169), Expect = 3e-14
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 682 GVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI 741
G S PQ + + GE + G Q +T ++ K I+ S +
Sbjct: 1 GSSGSS---GPQIIQFPEDQK-VRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHM 54
Query: 742 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ ++ L IL + E G YT NK G + VNL
Sbjct: 55 KVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95
Score = 64.3 bits (157), Expect = 1e-12
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+ P I + + + GE + L +V + W+ K ++ K
Sbjct: 6 SGPQIIQFPEDQKVRAGE--SVELFGKVTG--TQPITCTWMKFRKQIQESEHMKVENSEN 61
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + G YT N G +
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95
Score = 57.7 bits (140), Expect = 2e-10
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
W K++ + + L IL +E+ G Y NK GS + +L
Sbjct: 37 ITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
Query: 661 CVSK 664
V K
Sbjct: 97 VVDK 100
Score = 29.6 bits (67), Expect = 1.5
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 430 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLT 462
+ + P+ I D ++ G+S ++T
Sbjct: 1 GSSGSSGPQIIQFPEDQK-VRAGESVELFGKVT 32
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 80.9 bits (200), Expect = 1e-18
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
+ + +S+ + +G+SA F C +P V W G+ + R ++ +
Sbjct: 14 AARILTKPRSMT-VYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+I+ VQ+ D G Y N G+ T+
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
Score = 79.3 bits (196), Expect = 5e-18
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPH 541
++ A + +T+ +T + EG+SA F +P V W G+ L
Sbjct: 2 HHHHHHSSKTTLAARILTKPRSMT-VYEGESARFSCD---TDGEPVPTVTWLRKGQVLST 57
Query: 542 GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
R++ +I + G Y N G + +L
Sbjct: 58 SARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
Score = 68.2 bits (167), Expect = 4e-14
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+ + + E + + +P + W+ G+ L +R + T
Sbjct: 13 LAARILTKPRS-MTVYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
T +++ V D+G Y+ N G+ T+
Sbjct: 70 STFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
Score = 66.6 bits (163), Expect = 1e-13
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
+ ++ + ++ + EGE A F G+ TV +L G+ + S R +
Sbjct: 14 AARILTKPRSMT-VYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
EI + D G Y+ N G+ E L
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102
Score = 66.6 bits (163), Expect = 1e-13
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
+ ++ + ++ + EGE A F G+ TV +L G+ + S R +
Sbjct: 14 AARILTKPRSMT-VYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
EI + D G Y+ N G+ E L
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102
Score = 62.4 bits (152), Expect = 5e-12
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P V W G+ L R++ +I + G Y N G + +L
Sbjct: 44 PTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 80.4 bits (199), Expect = 2e-18
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV-SDFG 360
PP+F +++ + +G + ++ P V W+ NG+ + + KM+ S+ G
Sbjct: 4 GPPRFIQVPENMS-IDEGRFCRMDFKVS--GLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ V++ D+G Y C A N+ GE +
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
Score = 74.7 bits (184), Expect = 2e-16
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYR-TFHDF 551
P+FI +++ + EG+ + + V+ P V W+ NG+ + ++ +
Sbjct: 4 GPPRFIQVPENMS-IDEGRFCRMDFK---VSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK 59
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
G+ L ++G Y C A N+ G L ++K
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 68.9 bits (169), Expect = 2e-14
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAF 258
PP+F Q N+S EG + + G V + NG+ +++ + V
Sbjct: 5 PPRFI---QVPENMSIDEGRFCRMDFKV--SGLPAPDVSWYLNGRTVQSDDLHKMIVSEK 59
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
G+ L + D G Y C A N+ G+A +V L+
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
Score = 68.9 bits (169), Expect = 2e-14
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAF 747
PP+F Q N+S EG + + G V + NG+ +++ + V
Sbjct: 5 PPRFI---QVPENMSIDEGRFCRMDFKV--SGLPAPDVSWYLNGRTVQSDDLHKMIVSEK 59
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
G+ L + D G Y C A N+ G+A +V L+
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
Score = 65.0 bits (159), Expect = 3e-13
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-TTADFGFV 124
P FI + + E + ++ +V P + W NG+ ++ K ++ G
Sbjct: 6 PRFIQVPEN-MSIDEGRFCRMDFKVS--GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH 62
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKE 162
+L V D G Y C A N AGE + + KE
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 62.0 bits (151), Expect = 5e-12
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P+V W+ NG+ + ++ + G+ L ++G Y C A N+ G L
Sbjct: 35 PDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQL 94
Query: 660 KCVSK 664
++K
Sbjct: 95 DVLAK 99
Score = 27.3 bits (61), Expect = 7.9
Identities = 5/28 (17%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 435 EAPKFITQISDVTQLKEGQSAHFEARLT 462
P+FI +++ + EG+ + +++
Sbjct: 4 GPPRFIQVPENMS-IDEGRFCRMDFKVS 30
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 86.8 bits (214), Expect = 3e-18
Identities = 45/349 (12%), Positives = 97/349 (27%), Gaps = 72/349 (20%)
Query: 40 KVQEVEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLK 99
++ ++ + Y + +E VF + + L + Q L L + P +
Sbjct: 70 IIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPP--GSSPS 127
Query: 100 IEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCS 159
++ G + TL ++++ +D G +TC + I
Sbjct: 128 VQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI--- 174
Query: 160 TKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE 219
++ + +++ V S F F GE
Sbjct: 175 ---VVLAFQKAS------------SIVYKKEGEQVEFS-------FPLAFTVEKLTGSGE 212
Query: 220 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKI----EDTGV 275
+ ++A +T + ++ + + + L + + +G
Sbjct: 213 L-WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGN 271
Query: 276 YTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE 335
T K G+ VNL V ++ T C + P+
Sbjct: 272 LTLALEAKTGKLHQEVNLV-VMRATQLQKNLT------------------CEVWGPTSPK 312
Query: 336 LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNK 384
L + K R K V V + ++G + C +
Sbjct: 313 LMLSLKLENKEAKVSKREKAVW-----------VLNPEAGMWQCLLSDS 350
Score = 78.7 bits (193), Expect = 1e-15
Identities = 47/336 (13%), Positives = 92/336 (27%), Gaps = 59/336 (17%)
Query: 504 DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR-----------------YR 546
V K+G + + + W + + G++ R
Sbjct: 2 KVVLGKKGDTVELTCTASQ--KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR 59
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGS-DVTKASLKCVSKTNLILESQL----- 600
+ D G L I E+S Y C ++ + L S T+L+ L
Sbjct: 60 SLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLE 119
Query: 601 ------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 654
P V+ K G + L + ++SG + C
Sbjct: 120 SPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVE 169
Query: 655 TKASLKCVSKTNLILESQLPELRRQPAGVPDS-EDGRPPQFTSEFQHLSNLSEGEIAHFE 713
K ++++ + + E P FT E L+ ++
Sbjct: 170 --------FKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVE-----KLTGSGELWWQ 216
Query: 714 ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKI----EDTGVYTCRA 769
A +T + ++ + + + L + + +G T
Sbjct: 217 AERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLAL 276
Query: 770 TNKWGQAEISVNLECVVWSPSQTKLVYSLFEVPQPD 805
K G+ VNL + + Q L ++ P
Sbjct: 277 EAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPK 312
Score = 71.0 bits (173), Expect = 3e-13
Identities = 41/321 (12%), Positives = 84/321 (26%), Gaps = 46/321 (14%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
L I KIED+ Y C ++ + ++ V F S L G S
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQKEEVQLLV--------------FGLTANSDTHLLQGQSL 114
Query: 323 HFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAW 382
P V+ + + ++ ++ DSG + C
Sbjct: 115 TLTLESPP--GSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVL 162
Query: 383 NKYGEDFTRATIKCFGKGGVYLDSLQPE------SLARIRELENAQGQQPVAQAAPVAEA 436
+ + I + E S +E G + A A +
Sbjct: 163 QNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASS 222
Query: 437 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFS-NFFPSQGQQPVAQAAPVAEA 495
K + + + +L L L + A+
Sbjct: 223 SKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLAL--EAKT 280
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
K +++ V + + T P L++ K+ R +
Sbjct: 281 GKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK--------- 331
Query: 556 LDILYCYEENSGVYECRATNK 576
++ +G+++C ++
Sbjct: 332 --AVWVLNPEAGMWQCLLSDS 350
Score = 65.2 bits (158), Expect = 2e-11
Identities = 18/147 (12%), Positives = 50/147 (34%), Gaps = 14/147 (9%)
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL---------ECVDKSKGQPPKFTSHIK- 311
L + +++D+G +TC + E +++ V K +G+ +F+ +
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAF 202
Query: 312 SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIF--HKNRVKMVSDFGFVVMDI--A 367
++E L ++ + + + + + ++ + + + + A
Sbjct: 203 TVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQA 262
Query: 368 YVQSHDSGEYVCRAWNKYGEDFTRATI 394
Q SG K G+ +
Sbjct: 263 LPQYAGSGNLTLALEAKTGKLHQEVNL 289
Score = 51.0 bits (121), Expect = 8e-07
Identities = 32/320 (10%), Positives = 64/320 (20%), Gaps = 107/320 (33%)
Query: 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 565
T L +GQS P V+ K G + L + ++
Sbjct: 106 THLLQGQSLTLTLESPP--GSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQD 153
Query: 566 SGVYECRATNKYGSDVTKASLK----------------------CVSKTNLILESQLPEV 603
SG + C K + + + E+
Sbjct: 154 SGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGEL 213
Query: 604 EWFYNGKKLPHGHRYRTFHDFGIVI--------------------LDILYCYEENSGVYE 643
W + + + L SG
Sbjct: 214 WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT 273
Query: 644 CRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSN 703
K G + +L + L + G +
Sbjct: 274 LALEAKTGKLHQEVNL-----VVMRATQLQKNLTCEVWGPTSPK---------------- 312
Query: 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG 763
+ + K + S R + + + G
Sbjct: 313 --------------------LMLSLKLENKEAKVSKR-----------EKAVWVLNPEAG 341
Query: 764 VYTCRATNKWGQAEISVNLE 783
++ C ++ GQ + N++
Sbjct: 342 MWQCLLSDS-GQVLLESNIK 360
Score = 45.9 bits (108), Expect = 3e-05
Identities = 14/159 (8%), Positives = 40/159 (25%), Gaps = 24/159 (15%)
Query: 504 DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF----GIVILDIL 559
V +L ++A + + + + + + L
Sbjct: 203 TVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQA 262
Query: 560 YCYEENSGVYECRATNKYGSDVTKASLK--CVSKTNLILESQL-------PEVEWFYNGK 610
SG K G + +L ++ L ++ + K
Sbjct: 263 LPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENK 322
Query: 611 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
+ R + ++ +G+++C ++
Sbjct: 323 EAKVSKREK-----------AVWVLNPEAGMWQCLLSDS 350
Score = 43.2 bits (101), Expect = 2e-04
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 12/75 (16%)
Query: 82 QPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141
+L +V P L + K ++ R K V + + G++ C
Sbjct: 297 LQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK-----------AVWVLNPEAGMWQC 345
Query: 142 RAWNLAGETFTSTTI 156
+ +G+ + I
Sbjct: 346 LLSD-SGQVLLESNI 359
Score = 42.5 bits (99), Expect = 4e-04
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 19/86 (22%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD------------- 365
GD+ CT + ++ W ++ + N+ ++ + D
Sbjct: 9 GDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 366 ----IAYVQSHDSGEYVCRAWNKYGE 387
I ++ DS Y+C ++ E
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEE 92
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 79.4 bits (196), Expect = 4e-18
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
T +K++E + +G+S FEC L+ W GK + +R +
Sbjct: 8 HVGITKRLKTME-VLEGESCSFECVLSHE-SASDPAMWTVGGKTVGSSSRFQATRQGRKY 65
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
++ + D+GE V ++A++
Sbjct: 66 ILVVREAAPSDAGEVVFSV----RGLTSKASLI 94
Score = 73.2 bits (180), Expect = 6e-16
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ ++ + + EG+S FE L+ W GK + R++
Sbjct: 6 SGHVGITKRLKTME-VLEGESCSFECVLSH-ESASDPAMWTVGGKTVGSSSRFQATRQGR 63
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
IL + ++G +KASL
Sbjct: 64 KYILVVREAAPSDAGEVVFSV----RGLTSKASLI 94
Score = 71.3 bits (175), Expect = 3e-15
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 2/96 (2%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
S T + + + EGE FE + + + GK + +S R +
Sbjct: 3 SGSSGHVGITKRLKTME-VLEGESCSFECV-LSHESASDPAMWTVGGKTVGSSSRFQATR 60
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+L + D G +A + V
Sbjct: 61 QGRKYILVVREAAPSDAGEVVFSVRGLTSKASLIVR 96
Score = 71.3 bits (175), Expect = 3e-15
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 2/96 (2%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
S T + + + EGE FE + + + GK + +S R +
Sbjct: 3 SGSSGHVGITKRLKTME-VLEGESCSFECV-LSHESASDPAMWTVGGKTVGSSSRFQATR 60
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
+L + D G +A + V
Sbjct: 61 QGRKYILVVREAAPSDAGEVVFSVRGLTSKASLIVR 96
Score = 61.3 bits (149), Expect = 9e-12
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 2/86 (2%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
LK ++ E + E + + + W GK + SRF+ T
Sbjct: 7 GHVGITKRLKTM-EVLEGESCSFECVLSHE-SASDPAMWTVGGKTVGSSSRFQATRQGRK 64
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGE 149
L + E D G L +
Sbjct: 65 YILVVREAAPSDAGEVVFSVRGLTSK 90
Score = 56.2 bits (136), Expect = 5e-10
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
S +CV L ES W GK + R++ IL + ++G
Sbjct: 25 SCSFECV----LSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEV 80
Query: 643 ECRATNKYGSDVTKASLK 660
+KASL
Sbjct: 81 VFSV----RGLTSKASLI 94
Score = 27.4 bits (61), Expect = 7.6
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 434 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLV 470
+ ++ + + EG+S FE L+ + D
Sbjct: 6 SGHVGITKRLKTME-VLEGESCSFECVLSHESASDPA 41
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 79.3 bits (196), Expect = 5e-18
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
FT + +L+ +++ +A F C P V W + + + +
Sbjct: 4 GSSGANCFTEELTNLQ-VEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQE 59
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + I+ ++ DS Y C G+ +RA +
Sbjct: 60 GLTLRLTISALEKADSDTYTCDI----GQAQSRAQL 91
Score = 73.1 bits (180), Expect = 7e-16
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ A F +++++ ++E +A F + P V W +L +++ +
Sbjct: 6 SGANCFTEELTNLQ-VEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQEGL 61
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ L I + +S Y C G ++A L
Sbjct: 62 TLRLTISALEKADSDTYTCDI----GQAQSRAQL 91
Score = 65.0 bits (159), Expect = 4e-13
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
S FT E +L + E A F TV + + AS + +
Sbjct: 3 SGSSGANCFTEELTNLQ-VEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQ 58
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS 308
+ L I + D+ YTC +A++ V +G+ +S
Sbjct: 59 EGLTLRLTISALEKADSDTYTCDIGQAQSRAQLLV--------QGRRSGPSS 102
Score = 62.7 bits (153), Expect = 3e-12
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
S FT E +L + E A F TV + + AS + +
Sbjct: 3 SGSSGANCFTEELTNLQ-VEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQ 58
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+ L I + D+ YTC +A++ V
Sbjct: 59 EGLTLRLTISALEKADSDTYTCDIGQAQSRAQLLV 93
Score = 62.0 bits (151), Expect = 5e-12
Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 8/100 (8%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + F L ++ E + E P + W L + +
Sbjct: 1 GSSGSSGANCFTEELTNL-QVEEKGTAVFTCKTE---HPAATVTWRKGLLELRASGKHQP 56
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+ + + L ++ + D YTC G+ + +
Sbjct: 57 SQEGLTLRLTISALEKADSDTYTCD----IGQAQSRAQLL 92
Score = 53.9 bits (130), Expect = 4e-09
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 10/77 (12%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
A C E V W +L +++ + + L I + +S Y
Sbjct: 25 TAVFTCK------TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTY 78
Query: 643 ECRATNKYGSDVTKASL 659
C G ++A L
Sbjct: 79 TCDI----GQAQSRAQL 91
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 78.1 bits (193), Expect = 9e-18
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKMVSD 358
G PPK + + + +G C T +P +V W G+ I + R + +
Sbjct: 3 GIPPKIEALPSDIS-IDEGKVLTVACAFT--GEPTPEVTWSCGGRKIHSQEQGRFHIENT 59
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ I VQ D G Y N++G D I
Sbjct: 60 DDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
Score = 74.7 bits (184), Expect = 2e-16
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPH--GHRYRTFH 549
PK SD++ + EG+ T +P V W G+K+ R+ +
Sbjct: 3 GIPPKIEALPSDIS-IDEGKVLTVACA---FTGEPTPEVTWSCGGRKIHSQEQGRFHIEN 58
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ L I+ +++ G+Y N++GSD ++
Sbjct: 59 TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
Score = 67.3 bits (165), Expect = 6e-14
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHA 257
G PP+ + +S + EG++ + G+ T V + G+ I + R +
Sbjct: 3 GIPPKIEALPSDIS-IDEGKVLTVACAF--TGEPTPEVTWSCGGRKIHSQEQGRFHIENT 59
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+ L I+ + +D G+YT N++G +VN+
Sbjct: 60 DDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
Score = 67.3 bits (165), Expect = 6e-14
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHA 746
G PP+ + +S + EG++ + G+ T V + G+ I + R +
Sbjct: 3 GIPPKIEALPSDIS-IDEGKVLTVACAF--TGEPTPEVTWSCGGRKIHSQEQGRFHIENT 59
Query: 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ L I+ + +D G+YT N++G +VN+
Sbjct: 60 DDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
Score = 62.7 bits (153), Expect = 3e-12
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 601 PEVEWFYNGKKLPH--GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
PEV W G+K+ R+ + + L I+ +++ G+Y N++GSD +
Sbjct: 35 PEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVN 94
Query: 659 LK 660
+
Sbjct: 95 IH 96
Score = 59.6 bits (145), Expect = 3e-11
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTADFGF 123
P + E + L + +P ++ W G+ + RF
Sbjct: 6 PKIEALPSD-ISIDEGKVLTVACAFT--GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
TL + +V +D G+YT N G + I+
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 77.7 bits (192), Expect = 1e-17
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRY 545
+ ++ + AP F + + D + EGQ + V P + W NG+ + +
Sbjct: 3 SGSSGMEVAPSFSSVLKDCA-VIEGQDFVLQCS---VRGTPVPRITWLLNGQPIQYA--- 55
Query: 546 RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
R+ + G+ L I E+ G Y C A N G A +
Sbjct: 56 RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
Score = 73.1 bits (180), Expect = 5e-16
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 297 DKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356
P F+S +K + +G +C++ P ++ W NG+PI R
Sbjct: 5 SSGMEVAPSFSSVLKDCA-VIEGQDFVLQCSVR--GTPVPRITWLLNGQPI-QYAR--ST 58
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ G + I D G Y C A N G+ A +
Sbjct: 59 CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
Score = 65.8 bits (161), Expect = 2e-13
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 57 SGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK 116
SG P F LK + E Q L+ V P +I W+ NG+P++
Sbjct: 3 SGSSGMEVAPSFSSVLKD-CAVIEGQDFVLQCSVR--GTPVPRITWLLNGQPIQYARSTC 59
Query: 117 TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ G L + + D G YTC A N G+ S +
Sbjct: 60 ---EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96
Score = 65.4 bits (160), Expect = 3e-13
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
P F+ L + + EG+ + S+ G + +L NG+PI+ + G
Sbjct: 11 APSFS---SVLKDCAVIEGQDFVLQCSV--RGTPVPRITWLLNGQPIQYARSTCEA---G 62
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ L I ED G YTC A N GQ S +
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
Score = 65.4 bits (160), Expect = 3e-13
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
P F+ L + + EG+ + S+ G + +L NG+PI+ + G
Sbjct: 11 APSFS---SVLKDCAVIEGQDFVLQCSV--RGTPVPRITWLLNGQPIQYARSTCEA---G 62
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ L I ED G YTC A N GQ S +
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
Score = 60.8 bits (148), Expect = 1e-11
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P + W NG+ + + R+ + G+ L I E+ G Y C A N G A +
Sbjct: 41 PRITWLLNGQPIQYA---RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 77.8 bits (192), Expect = 2e-17
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS 357
P F +K + + +G F C + +P+ K+ WF +GK I K+ +
Sbjct: 3 SGSSGAPFFEMKLKHYK-IFEGMPVTFTCRVA--GNPKPKIYWFKDGKQISPKSDHYTIQ 59
Query: 358 --DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
G + D G Y A N G +
Sbjct: 60 RDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRL 98
Score = 73.5 bits (181), Expect = 5e-16
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKL-PHGHRYR 546
++ + AP F ++ + EG F R V +P + WF +GK++ P Y
Sbjct: 2 SSGSSGAPFFEMKLKHYK-IFEGMPVTFTCR---VAGNPKPKIYWFKDGKQISPKSDHYT 57
Query: 547 TFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
D G L ++ G Y A N G L
Sbjct: 58 IQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRL 98
Score = 67.0 bits (164), Expect = 1e-13
Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 6/110 (5%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRT 254
S P F + +H + EG F + G+ + + +GK I H
Sbjct: 3 SGSSGAPFFEMKLKHYK-IFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQ 59
Query: 255 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
G L + ++D G YT A N G+ + L V P
Sbjct: 60 RDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM-VQAVNSGPS 108
Score = 65.8 bits (161), Expect = 2e-13
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRT 743
S P F + +H + EG F + G+ + + +GK I H
Sbjct: 3 SGSSGAPFFEMKLKHYK-IFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQ 59
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
G L + ++D G YT A N G+ + L
Sbjct: 60 RDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Score = 65.5 bits (160), Expect = 4e-13
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + P F + LK +K+ E P+ +V +P KI W +GK + S T
Sbjct: 1 GSSGSSGAPFFEMKLKH-YKIFEGMPVTFTCRVA--GNPKPKIYWFKDGKQISPKSDHYT 57
Query: 118 TA--DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
G +L T D G YT A N G + +
Sbjct: 58 IQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Score = 60.1 bits (146), Expect = 3e-11
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 601 PEVEWFYNGKKL-PHGHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
P++ WF +GK++ P Y D G L ++ G Y A N G
Sbjct: 38 PKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGR 97
Query: 659 L 659
L
Sbjct: 98 L 98
Score = 28.1 bits (63), Expect = 4.1
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 430 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLT 462
++ + AP F ++ + EG F R+
Sbjct: 2 SSGSSGAPFFEMKLKHYK-IFEGMPVTFTCRVA 33
Score = 27.3 bits (61), Expect = 7.1
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 1 MVKATNSKGSATTSGTL 17
+ A N +G + +G L
Sbjct: 82 TIMAANPQGRISCTGRL 98
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 85.8 bits (211), Expect = 2e-17
Identities = 61/482 (12%), Positives = 115/482 (23%), Gaps = 84/482 (17%)
Query: 252 IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIK 311
+ G V+ I +D+G Y C V+LE Q P + K
Sbjct: 66 LTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVS-----QGPGLLNDTK 120
Query: 312 SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIF------------HKNRVKMVSD- 358
+ C N + K + G + R+++
Sbjct: 121 VYTVDLGR-TVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQG 179
Query: 359 ---FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARI 415
F V+ I ++ D+G+Y+C+A + + A ++ + S+
Sbjct: 180 TGQLLFSVV-INQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFH 238
Query: 416 RELENAQGQQPVAQ-AAPVAEAPKFITQISD---------VTQLKEGQSAHFEARLTPVT 465
L E + + + + F +T +
Sbjct: 239 CALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLR 298
Query: 466 DPD---LVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP 522
D +C S+ +G A V E + V G S
Sbjct: 299 KEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVK-GVAGSSVAVLCPYNR 357
Query: 523 VTDPDL---------------VVEWFYNGKKLPHGHRY--RTFHDFGIVILDILYCYEEN 565
+ ++ K + R G + + +
Sbjct: 358 KESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRD 417
Query: 566 SGVYECRATNKYGSDVTKASLKCVSKTNLILESQL-----------------------PE 602
+G Y C T + NL + +
Sbjct: 418 AGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYW 477
Query: 603 VEWFYNGKKL-------PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 655
+W G + P + +V L + + G Y C + T
Sbjct: 478 CKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGET 537
Query: 656 KA 657
A
Sbjct: 538 AA 539
Score = 83.1 bits (204), Expect = 1e-16
Identities = 58/502 (11%), Positives = 135/502 (26%), Gaps = 70/502 (13%)
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
+ G +++ ++ D G Y C + ++ S L+ T+ +
Sbjct: 71 ENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDL---- 126
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 239
+ + Q L + V D + V
Sbjct: 127 ---------GRTVTINCPFKTENAQKRKSLYKQIGLY----------PVLVIDSSGYVNP 167
Query: 240 LYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
Y G+ R+ + + I ++ D G Y C+A + + + +L+ +
Sbjct: 168 NYTGR-----IRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP 222
Query: 299 SKGQ---PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM 355
+ + G + + A F C + + ++ V + + R+ +
Sbjct: 223 EPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVV-NTLGKRAPAFEGRILL 281
Query: 356 VSD--FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLA 413
G + I ++ D+G Y+C A + + ++
Sbjct: 282 NPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVV 341
Query: 414 RIRELENA-------------------QGQQPVAQAAPVAEAPKFITQISD--VTQLKEG 452
+ + + + ++ ++ + ++ L+E
Sbjct: 342 KGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEP 401
Query: 453 QSAHFEARLTPVTDPDL---VCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLK 509
+ F L +T D C +N + K ++ V
Sbjct: 402 GNGTFTVILNQLTSRDAGFYWCL--TNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGET 459
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKL-------PHGHRYRTFHDFGIVILDILYCY 562
HF + + +W G + P + +V L +
Sbjct: 460 LKVPCHFPCKFSSYEKY--WCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVT 517
Query: 563 EENSGVYECRATNKYGSDVTKA 584
+ G Y C + T A
Sbjct: 518 RADEGWYWCGVKQGHFYGETAA 539
Score = 77.0 bits (188), Expect = 1e-14
Identities = 40/373 (10%), Positives = 84/373 (22%), Gaps = 72/373 (19%)
Query: 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL--------- 111
++ ++ + + + + + + +N K + G L
Sbjct: 107 LEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVN 166
Query: 112 ---GSRFKTTADF---GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLI 165
R + ++ + ++ D G Y C+A + + + + L
Sbjct: 167 PNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQV-----LK 221
Query: 166 ERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEA 225
+ + + S
Sbjct: 222 PEPELVYEDLR-------------GSVTFHCALGPEVANVAKFLCRQS------------ 256
Query: 226 SLIPVGDQTMTVEFLYNGKPIEAS---HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 282
+ V GK A + G + I G + ED G Y C A +
Sbjct: 257 -----SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHS 311
Query: 283 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELK----- 337
E S ++ G S C +K
Sbjct: 312 DGQLQEGSPIQAWQLFV--NEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLW 369
Query: 338 --VEWFHNGKPIFHKNRVKMVSDFGFVVMD----------IAYVQSHDSGEYVCRAWNKY 385
+ + + VK + +++ + + S D+G Y C
Sbjct: 370 EGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDT 429
Query: 386 GEDFTRATIKCFG 398
T G
Sbjct: 430 LWRTTVEIKIIEG 442
Score = 68.5 bits (166), Expect = 4e-12
Identities = 49/349 (14%), Positives = 92/349 (26%), Gaps = 78/349 (22%)
Query: 510 EGQSAHFEARLTPVT-DPDLVVEWFYNGKK--------------LPHGHRY--RTFHDFG 552
EG S P + + W G + + R F + G
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL------------ 600
+++I +++SG Y+C SL+ L+ ++++
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTIN 133
Query: 601 --------PEVEWFYNGKKLP--------------HGHRYR---TFHDFGIVILDILYCY 635
+ + Y L + R R + + I
Sbjct: 134 CPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR 193
Query: 636 EENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFT 695
++G Y C+A + S+ A L+ + + +
Sbjct: 194 LSDAGQYLCQAGDDSNSNKKNADLQVLKP-------------------EPELVYEDLRGS 234
Query: 696 SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS---HRIRTVHAFGMVVL 752
F +A F + V GK A + G +
Sbjct: 235 VTFHCALGPEVANVAKFLCR--QSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSV 292
Query: 753 EILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEV 801
I G + ED G Y C A + E S ++ ++ + S V
Sbjct: 293 VITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVV 341
Score = 67.3 bits (163), Expect = 1e-11
Identities = 46/371 (12%), Positives = 89/371 (23%), Gaps = 53/371 (14%)
Query: 49 AGKYQ---RQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEP------------K 93
AG+Y S + A + P + + P
Sbjct: 197 AGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQS 256
Query: 94 NDPNLKIEWIFNGKPLE-LGSRFKTT--ADFGFVTLDLTEVYDRDQGIYTCRAWNLAGET 150
+ N + GK R G ++ +T + D G Y C A +
Sbjct: 257 SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQ 316
Query: 151 FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ 210
S + + + E + P+ ++ + ++
Sbjct: 317 EGS--PIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKE------SKSIKYWCL 368
Query: 211 HLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKI 270
+ + D V+ Y G+ + G + +
Sbjct: 369 WEGAQNG--------RCPLLVDSEGWVKAQYEGR-----LSLLEEPGNGTFTVILNQLTS 415
Query: 271 EDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTP 330
D G Y C + + P ++ ++ G HF C +
Sbjct: 416 RDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVP---GNVTAVLGETLKVPCHFPCKFSS 472
Query: 331 VNDPELKVEWFHNGKPIFHK-----NRVKMVSDFG---FVVMDIAYVQSHDSGEYVCRAW 382
K W + G ++ + D + + V D G Y C
Sbjct: 473 YEKYWCK--WNNTGCQALPSQDEGPSKAFVNCDENSRLVSLT-LNLVTRADEGWYWCGVK 529
Query: 383 NKYGEDFTRAT 393
+ T A
Sbjct: 530 QGHFYGETAAV 540
Score = 61.2 bits (147), Expect = 8e-10
Identities = 69/576 (11%), Positives = 131/576 (22%), Gaps = 121/576 (21%)
Query: 319 GDSAHFECTLTPVN-DPELKVEWFHNGKPIF--------------HKNRVKMVSD--FGF 361
G+S C P + + + W G + R + + G
Sbjct: 15 GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENA 421
V++IA + DSG Y C +++ G+ L + +
Sbjct: 75 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGL----LNDTKVYTVDLGRTV 130
Query: 422 QGQQPVAQAAP---------VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLV-- 470
P + P + S + + T +V
Sbjct: 131 TINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVIN 190
Query: 471 -----------C----ELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAH 515
C + SN + Q + V E + + A
Sbjct: 191 QLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAK 250
Query: 516 FEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD--FGIVILDILYCYEENSGVYECRA 573
F R + + D+VV + R G + I +E++G Y C A
Sbjct: 251 FLCRQSSGENCDVVV-NTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGA 309
Query: 574 TNKYGSDVTK-----------------------------ASLKCV------------SKT 592
+ ++ C
Sbjct: 310 HSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLW 369
Query: 593 NLILESQLPEVEWFYNGKKLPHGHRY--RTFHDFGIVILDILYCYEENSGVYECRATNKY 650
+ P + K + R G + + ++G Y C
Sbjct: 370 EGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDT 429
Query: 651 GSDVTKASLKCVSKTNLILESQLPELRRQPAGVP---DSEDGRPPQFTSEFQHLSNLSEG 707
T + NL + + + + VP + ++
Sbjct: 430 LWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYW------------ 477
Query: 708 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767
+ + P +A + +V L + D G Y C
Sbjct: 478 ---------CKWNNTGCQALPSQDEGPSKAF--VNCDENSRLVSLTLNLVTRADEGWYWC 526
Query: 768 RATNKWGQAE-ISVNLECVVWSPSQTKLVYSLFEVP 802
E +V + V + SL +
Sbjct: 527 GVKQGHFYGETAAVYVA-VEERKAAGSRDVSLAKAD 561
Score = 38.8 bits (89), Expect = 0.007
Identities = 31/212 (14%), Positives = 51/212 (24%), Gaps = 43/212 (20%)
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
G T+ L ++ RD G Y C T + +L
Sbjct: 402 GNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGN---------- 451
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 239
+ + + P P + G Q + +
Sbjct: 452 VTAVLGETLKVPCHFPCKFSSYEKYWCKWNNT-------------------GCQALPSQD 492
Query: 240 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVNLECVDK 298
K + +V L + D G Y C E +V + V++
Sbjct: 493 EGPSKAF-----VNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVA-VEE 546
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTP 330
K + S L D+A E L
Sbjct: 547 RKAAGSRDVS-------LAKADAAPDEKVLDS 571
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 79.7 bits (196), Expect = 4e-17
Identities = 32/194 (16%), Positives = 51/194 (26%), Gaps = 16/194 (8%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF--LYNGKPIEASHRIRTVHA 257
G TS ++ +S E E++ F+ + ++ P I
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLK 317
L + I G Y CR + +L V +P + H + +
Sbjct: 66 TFF--LVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV-----KPLTLSVHSERSQ-FP 117
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNG----KPIFHKNRVKMVSDFGFVVMDIAYVQSHD 373
D CT+ P V+W P V D V +
Sbjct: 118 DFSVLTVTCTVN--AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPW 175
Query: 374 SGEYVCRAWNKYGE 387
C N E
Sbjct: 176 HLPVTCVGKNDKEE 189
Score = 62.7 bits (152), Expect = 2e-11
Identities = 25/184 (13%), Positives = 40/184 (21%), Gaps = 42/184 (22%)
Query: 511 GQSAHFEARLTPVT-DPDLVVEWFYNGKKL-----------------PHGHRYRTFHDFG 552
G+ + V+ P++ V WF G P +
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL------------ 600
L + + G Y CR + L V L + S+
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVT 125
Query: 601 --------PEVEWFYNGKKLPH----GHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
P V+W P D + + L + C N
Sbjct: 126 CTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKN 185
Query: 649 KYGS 652
Sbjct: 186 DKEE 189
Score = 55.8 bits (134), Expect = 6e-09
Identities = 24/200 (12%), Positives = 39/200 (19%), Gaps = 55/200 (27%)
Query: 601 PEVEWFYNGKKL-----------------PHGHRYRTFHDFGIVILDILYCYEENSGVYE 643
EV WF G P + L + + G Y
Sbjct: 24 IEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYL 83
Query: 644 CRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSN 703
CR + L V P + +
Sbjct: 84 CRMKLGETEVTKQEHLSVVK---------------------------PLTLSVHSERSQ- 115
Query: 704 LSEGEIAHFE--ASLIPVGDQTMTVEFLYNG----KPIEASHRIRTVHAFGMVVLEILGT 757
+ + + V++L P A+ + + V L
Sbjct: 116 FPDFSVLTVTCTVN----AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSL 171
Query: 758 KIEDTGVYTCRATNKWGQAE 777
TC N +A
Sbjct: 172 PKPWHLPVTCVGKNDKEEAH 191
Score = 48.9 bits (116), Expect = 1e-06
Identities = 36/242 (14%), Positives = 55/242 (22%), Gaps = 67/242 (27%)
Query: 58 GPEETFAKPVFIVPLKPE-----FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG 112
G T V L PE FKLG + L ++ + IF P
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHH--------DVIFIEWPFR-- 55
Query: 113 SRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPK 172
F L +T G Y CR GET + + S +
Sbjct: 56 GFFDIHRSANTFFLVVTAANISHDGNYLCRMKL--GETEVTKQEHLSVVK---------- 103
Query: 173 GEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPV 230
P + + + + +
Sbjct: 104 -----------------------------PLTLSVHSERSQ-FPDFSVLTVTCTVN---- 129
Query: 231 GDQTMTVEFLYNG----KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 286
V++L P A+ + + V L TC N +
Sbjct: 130 AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEE 189
Query: 287 AE 288
A
Sbjct: 190 AH 191
Score = 45.0 bits (106), Expect = 2e-05
Identities = 13/95 (13%), Positives = 24/95 (25%), Gaps = 18/95 (18%)
Query: 319 GDSAHFECTLTPVN-DPELKVEWFHNGKPIF-----------------HKNRVKMVSDFG 360
G+ V+ PE++V WF G + +
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + G Y+CR E + +
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLS 100
Score = 42.3 bits (99), Expect = 2e-04
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 6/103 (5%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF--LYNGKPIEASHRIRTVHA 746
G TS ++ +S E E++ F+ + ++ P I
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
L + I G Y CR G+ E++ V P
Sbjct: 66 TFF--LVVTAANISHDGNYLCRMKL--GETEVTKQEHLSVVKP 104
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 76.3 bits (188), Expect = 5e-17
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
+ I L +K + A F+C V+D ++ +W+ NG + R+ + F
Sbjct: 8 QLEVLQDIADLT-VKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGRFH 63
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGE 387
+ I V+ D G+Y
Sbjct: 64 KLVIDDVRPEDEGDYTFVPDGYALS 88
Score = 70.5 bits (173), Expect = 6e-15
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ + + I+D+T +K + A F+ V+D + +W+ NG ++ R H
Sbjct: 6 SGQLEVLQDIADLT-VKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGR 61
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588
L I E+ G Y S S K
Sbjct: 62 FHKLVIDDVRPEDEGDYTFVPDGYALS----LSAKL 93
Score = 69.3 bits (170), Expect = 2e-14
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
+ Q +++L+ E A F+ V D+ +T ++ NG + S RI H
Sbjct: 8 QLEVL---QDIADLTVKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGR 61
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSK 300
L I + ED G YT +N + S
Sbjct: 62 FHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSG 102
Score = 66.6 bits (163), Expect = 1e-13
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
+ Q +++L+ E A F+ V D+ +T ++ NG + S RI H
Sbjct: 8 QLEVL---QDIADLTVKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGR 61
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785
L I + ED G YT +N +
Sbjct: 62 FHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEI 98
Score = 62.4 bits (152), Expect = 3e-12
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + + + + + A+ + +V +D + +W NG + R
Sbjct: 1 GSSGSSGQLEVLQDIADL-TVKAAEQAVFKCEV---SDEKVTGKWYKNGVEVRPSKRITI 56
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGET 150
+ F L + +V D+G YT A
Sbjct: 57 SHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSL 89
Score = 53.2 bits (128), Expect = 8e-09
Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 17/89 (19%)
Query: 579 SDVT-----KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDIL 632
+D+T +A KC VS +W+ NG ++ R H L I
Sbjct: 16 ADLTVKAAEQAVFKCEVSDEK-------VTGKWYKNGVEVRPSKRITISHVGRFHKLVID 68
Query: 633 YCYEENSGVYECRATNKYGSDVTKASLKC 661
E+ G Y S S K
Sbjct: 69 DVRPEDEGDYTFVPDGYALS----LSAKL 93
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 75.6 bits (186), Expect = 7e-17
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
QP ++SL + GD C + D + W +G + NR ++ +
Sbjct: 8 QPWGVPVEVESLL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGE--- 60
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+++ DSG Y C + G D T ++
Sbjct: 61 -EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
Score = 67.9 bits (166), Expect = 3e-14
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
P P + + + G + D + W +G +L +R R +
Sbjct: 4 PEQAQPWGVPVEVESLLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGE 60
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+++ +SG+Y C ++ GSD T S+
Sbjct: 61 ----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
Score = 63.7 bits (155), Expect = 1e-12
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 56 PSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF 115
P+ PE A+P + + L L ++ D I W+ +G L +R
Sbjct: 1 PTLPE--QAQPWGVPVEVESLLVHPGDLLQLRCRLR---DDVQSINWLRDGVQLVESNRT 55
Query: 116 KTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ T + +++ + D G+Y C + +G T ++
Sbjct: 56 RITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
Score = 62.9 bits (153), Expect = 2e-12
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P E + L + G++ + D ++ +L +G + S+R R
Sbjct: 9 PWGVPVEVESLL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGE---- 60
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+E+ + D+G+Y C ++ G ++
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
Score = 62.9 bits (153), Expect = 2e-12
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P E + L + G++ + D ++ +L +G + S+R R
Sbjct: 9 PWGVPVEVESLL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGE---- 60
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+E+ + D+G+Y C ++ G ++
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
Score = 57.1 bits (138), Expect = 2e-10
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+ W +G +L +R R + +++ +SG+Y C ++ GSD T S+
Sbjct: 38 QSINWLRDGVQLVESNRTRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 75.4 bits (186), Expect = 7e-17
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+ + +E + G++AHFE L+ +P++ +W G+P+ +++ D
Sbjct: 4 ALIEVEKPLYGVE-VFVGETAHFEIELS---EPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 362 VVMDIAYVQSHDSGEYVCRAWN 383
++ + Q +GE +A N
Sbjct: 60 HILILHNCQLGMTGEVSFQAAN 81
Score = 73.1 bits (180), Expect = 5e-16
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
+ + V + G++AHFE +++PD+ +W G+ L D I
Sbjct: 6 IEVEKPLYGVE-VFVGETAHFEIE---LSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI 61
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L + C +G +A N + A+LK
Sbjct: 62 LILHNCQLGMTGEVSFQAAN----TKSAANLK 89
Score = 70.0 bits (172), Expect = 5e-15
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 260
+ + + GE AHFE I + + + ++ G+P+ AS +
Sbjct: 4 ALIEVEKPLYGVE-VFVGETAHFE---IELSEPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 261 VVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
+L + ++ TG + +A N A + V
Sbjct: 60 HILILHNCQLGMTGEVSFQAANTKSAANLKV 90
Score = 70.0 bits (172), Expect = 5e-15
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
+ + + GE AHFE I + + + ++ G+P+ AS +
Sbjct: 4 ALIEVEKPLYGVE-VFVGETAHFE---IELSEPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+L + ++ TG + +A N A + V
Sbjct: 60 HILILHNCQLGMTGEVSFQAANTKSAANLKV 90
Score = 60.4 bits (147), Expect = 2e-11
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
A PL ++ + H E ++ ++P++ +W G+PL + D
Sbjct: 4 ALIEVEKPLYGV-EVFVGETAHFEIEL---SEPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 124 VTLDLTEVYDRDQGIYTCRAWN 145
L L G + +A N
Sbjct: 60 HILILHNCQLGMTGEVSFQAAN 81
Score = 53.5 bits (129), Expect = 4e-09
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 12/79 (15%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
A + +S+ + +W G+ L D IL + C +G
Sbjct: 22 TAHFEIELSEPD-------VHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGE 74
Query: 642 YECRATNKYGSDVTKASLK 660
+A N + A+LK
Sbjct: 75 VSFQAAN----TKSAANLK 89
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 75.4 bits (186), Expect = 7e-17
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PK + + ++ +K G + + E P+ W + + +
Sbjct: 2 KPKILTASRKIK-IKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + DSG Y + N+ GED +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 70.0 bits (172), Expect = 6e-15
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
PK +T + +K G + + E PD W
Sbjct: 2 KPKILTASRKIK-IKAGFTHNLEV---DFIGAPDPTATWTVGDSGAALAPELLVDAKSST 57
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ +SG Y+ + N+ G D +
Sbjct: 58 TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 66.2 bits (162), Expect = 1e-13
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P+ + + + + G + E I G T + + +
Sbjct: 2 KPKILTASRKIK-IKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+ K D+G Y + N+ G+ E +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
Score = 66.2 bits (162), Expect = 1e-13
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P+ + + + + G + E I G T + + +
Sbjct: 2 KPKILTASRKIK-IKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ K D+G Y + N+ G+ E +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
Score = 64.3 bits (157), Expect = 7e-13
Identities = 17/95 (17%), Positives = 25/95 (26%), Gaps = 9/95 (9%)
Query: 65 KPVFIVPLKP-EFKLGEAQPLHLEAQV--EPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
KP + + + K G +LE P P W L A
Sbjct: 2 KPKILTASRKIKIKAGF--THNLEVDFIGAPD--P--TATWTVGDSGAALAPELLVDAKS 55
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
++ D G Y + N GE +
Sbjct: 56 STTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
Score = 57.7 bits (140), Expect = 1e-10
Identities = 8/60 (13%), Positives = 14/60 (23%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P W + +SG Y+ + N+ G D +
Sbjct: 32 PTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 75.5 bits (186), Expect = 7e-17
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
S F + + G F + DP+L+V+W+ NG+ I +
Sbjct: 3 SGSSGAAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEHK 59
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
++ I Q D EY A G++ +
Sbjct: 60 GCQRILFINNCQMTDDSEYYVTA----GDEKCSTELF 92
Score = 71.6 bits (176), Expect = 2e-15
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ F + Q+ +G F + DP L V+W+ NG+++ +Y H
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
IL I C + Y A G + L
Sbjct: 62 QRILFINNCQMTDDSEYYVTA----GDEKCSTELF 92
Score = 65.5 bits (160), Expect = 3e-13
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
S F + +G F + D + V++ NG+ I S + H
Sbjct: 2 SSGSSGAAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEH 58
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
+L I ++ D Y A ++ E+ V
Sbjct: 59 KGCQRILFINNCQMTDDSEYYVTAGDEKCSTELFV 93
Score = 65.5 bits (160), Expect = 3e-13
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
S F + +G F + D + V++ NG+ I S + H
Sbjct: 2 SSGSSGAAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEH 58
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+L I ++ D Y A ++ E+ V
Sbjct: 59 KGCQRILFINNCQMTDDSEYYVTAGDEKCSTELFV 93
Score = 65.5 bits (160), Expect = 3e-13
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+ F L P +++ + + ++ DP L+++W NG+ + +++
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL---ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQ 62
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L + D Y AG+ ST ++
Sbjct: 63 RILFINNCQMTDDSEYYVT----AGDEKCSTELF 92
Score = 51.6 bits (124), Expect = 2e-08
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 10/78 (12%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
+ L EV+W+ NG+++ +Y H IL I C + Y
Sbjct: 25 RVRFVVE------LADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEY 78
Query: 643 ECRATNKYGSDVTKASLK 660
A G + L
Sbjct: 79 YVTA----GDEKCSTELF 92
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 75.9 bits (187), Expect = 1e-16
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
+G+ ++ ++ +++G SA F C ++P N V WF + P+ ++ +
Sbjct: 10 QGRRVHIIEDLEDVD-VQEGSSATFRCRISPANYEP--VHWFLDKTPLHANELNEIDAQP 66
Query: 360 GFV-VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
G V+ + + DSG A G+ A ++
Sbjct: 67 GGYHVLTLRQLALKDSGTIYFEA----GDQRASAALR 99
Score = 70.9 bits (174), Expect = 5e-15
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 8/114 (7%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR 546
+ I + DV ++EG SA F R++P V WF + L
Sbjct: 5 SSGLVQGRRVHIIEDLEDVD-VQEGSSATFRCRISPANYEP--VHWFLDKTPLHANELNE 61
Query: 547 TF-HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ 599
G +L + ++SG A G A+L+ K ++ S
Sbjct: 62 IDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSG 111
Score = 62.0 bits (151), Expect = 6e-12
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 8/110 (7%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
+ I L+ + E ++ P N + W + PL + A G
Sbjct: 13 RVHIIEDLEDV-DVQEGSSATFRCRISPANYE--PVHWFLDKTPLHANELNEIDAQPGGY 69
Query: 125 -TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKG 173
L L ++ +D G AG+ S + + K S+ R+ G
Sbjct: 70 HVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKPSVFSRSGPSSG 115
Score = 61.6 bits (150), Expect = 1e-11
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 4/106 (3%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
GR + + + + EG A F + V + + P+ A+ G
Sbjct: 11 GRRVHIIEDLEDVD-VQEGSSATFRCRI--SPANYEPVHWFLDKTPLHANELNEIDAQPG 67
Query: 260 MV-VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
VL + ++D+G A ++ A + V + S+ P
Sbjct: 68 GYHVLTLRQLALKDSGTIYFEAGDQRASAALRVTEKPSVFSRSGPS 113
Score = 58.6 bits (142), Expect = 1e-10
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
GR + + + + EG A F + V + + P+ A+ G
Sbjct: 11 GRRVHIIEDLEDVD-VQEGSSATFRCRI--SPANYEPVHWFLDKTPLHANELNEIDAQPG 67
Query: 749 MV-VLEILGTKIEDTGVYTCRATNKWGQAEISV 780
VL + ++D+G A ++ A + V
Sbjct: 68 GYHVLTLRQLALKDSGTIYFEAGDQRASAALRV 100
Score = 52.0 bits (125), Expect = 2e-08
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 601 PEVEWFYNGKKLPHGHRYRTF-HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
V WF + L G +L + ++SG A G A+L
Sbjct: 43 EPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAAL 98
Query: 660 KCVSKTNLILESQ 672
+ K ++ S
Sbjct: 99 RVTEKPSVFSRSG 111
Score = 32.0 bits (73), Expect = 0.24
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 428 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLV 470
+ I + DV ++EG SA F R++P +
Sbjct: 5 SSGLVQGRRVHIIEDLEDVD-VQEGSSATFRCRISPANYEPVH 46
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 74.3 bits (183), Expect = 2e-16
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYRTFHD 550
++ F ++ Q+ +G + D D V+W NG+++ G +Y
Sbjct: 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESI 68
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
L I C + Y+C G + L
Sbjct: 69 GAKRTLTISQCSLADDAAYQCVV----GGEKCSTEL 100
Score = 73.9 bits (182), Expect = 4e-16
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-FHKNRVKMVSDFGF 361
F ++ + G + D + +V+W NG+ I ++ S
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESIGAK 71
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ I+ D Y C G + +
Sbjct: 72 RTLTISQCSLADDAAYQCVV----GGEKCSTEL 100
Score = 65.5 bits (160), Expect = 3e-13
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 4/99 (4%)
Query: 194 VPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRI 252
++ + F + + +S+G + D V++L NG+ I+ S +
Sbjct: 7 HSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKY 63
Query: 253 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
L I + D Y C + E+ V
Sbjct: 64 IFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFV 102
Score = 65.5 bits (160), Expect = 3e-13
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 4/99 (4%)
Query: 683 VPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRI 741
++ + F + + +S+G + D V++L NG+ I+ S +
Sbjct: 7 HSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKY 63
Query: 742 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
L I + D Y C + E+ V
Sbjct: 64 IFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFV 102
Score = 61.6 bits (150), Expect = 7e-12
Identities = 18/95 (18%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-GSRFKTTADFG 122
F L+P +++ + + L ++ D + +++W+ NG+ +++ GS++ +
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVEL---ADHDAEVKWLKNGQEIQMSGSKYIFESIGA 70
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
TL +++ D Y C G ST ++
Sbjct: 71 KRTLTISQCSLADDAAYQCV----VGGEKCSTELF 101
Score = 51.6 bits (124), Expect = 3e-08
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 11/78 (14%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGV 641
K L L EV+W NG+++ G +Y L I C +
Sbjct: 33 KIRLTVE------LADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAA 86
Query: 642 YECRATNKYGSDVTKASL 659
Y+C G + L
Sbjct: 87 YQCVV----GGEKCSTEL 100
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 80.2 bits (197), Expect = 3e-16
Identities = 25/202 (12%), Positives = 61/202 (30%), Gaps = 29/202 (14%)
Query: 203 PQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASH-RIRTVHAFG 259
P + + ++ G+ + G ++ A+ + + + G
Sbjct: 159 PTLKVQVPNA-SVDVGDDVLLRCQVE----GRGLEQAGWILTELEQSATVMKSGGLPSLG 213
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
+ + + T + TC A N G+AE+SV + F + ++ ++
Sbjct: 214 LTLANV--TSDLNRKNVTCWAENDVGRAEVSVQVN---------VSFPASVQLHTAVEM- 261
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV-------KMVSDFGFVVMDIAYVQSH 372
++ P + W NG + + + + +
Sbjct: 262 HHWCIPFSVD--GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV 319
Query: 373 DSGEYVCRAWNKYGEDFTRATI 394
++G Y A N +G+
Sbjct: 320 NNGNYTLLAANPFGQASASIMA 341
Score = 78.6 bits (193), Expect = 1e-15
Identities = 24/190 (12%), Positives = 46/190 (24%), Gaps = 29/190 (15%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYRTFHDFG 552
P Q+ + + + G ++ W + + G
Sbjct: 157 GVPTLKVQVPNAS-VDVGDDVLLRCQVEGRGLEQ--AGWILTELEQSATVMKSGGLPSLG 213
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ------------- 599
+ + ++ + N C A N G + ++ L +
Sbjct: 214 LTLANVTS--DLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVD 271
Query: 600 ---LPEVEWFYNGKKLPHGHRYRTFHDFGIVI-------LDILYCYEENSGVYECRATNK 649
P + W +NG L T L + N+G Y A N
Sbjct: 272 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 331
Query: 650 YGSDVTKASL 659
+G
Sbjct: 332 FGQASASIMA 341
Score = 71.3 bits (174), Expect = 2e-13
Identities = 27/193 (13%), Positives = 49/193 (25%), Gaps = 46/193 (23%)
Query: 600 LPEVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
L + W + + G+ + ++ + N C A N G
Sbjct: 187 LEQAGWILTELEQSATVMKSGGLPSLGLTLANVTS--DLNRKNVTCWAENDVGRAEVSVQ 244
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEI-AHFEASLI 717
+ F + Q + + F
Sbjct: 245 VN-------------------------------VSFPASVQLHTAVEMHHWCIPFSVD-- 271
Query: 718 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV-------VLEILGTKIEDTGVYTCRAT 770
G ++ +L+NG + + I T L + + G YT A
Sbjct: 272 --GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329
Query: 771 NKWGQAEISVNLE 783
N +GQA S+
Sbjct: 330 NPFGQASASIMAA 342
Score = 64.8 bits (157), Expect = 3e-11
Identities = 33/209 (15%), Positives = 53/209 (25%), Gaps = 60/209 (28%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEV-YDRDQGIYTCRAWNLAGETFTS 153
+ WI LE + + + L L V D ++ TC A N G S
Sbjct: 185 RGLEQAGWILTE--LEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVS 242
Query: 154 TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLS 213
+ F + Q +
Sbjct: 243 VQVN---------------------------------------------VSFPASVQLHT 257
Query: 214 NLSEGEI-AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV-------VLEI 265
+ F G ++ +L+NG + + I T L +
Sbjct: 258 AVEMHHWCIPFSVD----GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 313
Query: 266 LGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ G YT A N +GQA S+
Sbjct: 314 NQPTHVNNGNYTLLAANPFGQASASIMAA 342
Score = 50.5 bits (120), Expect = 1e-06
Identities = 23/146 (15%), Positives = 35/146 (23%), Gaps = 11/146 (7%)
Query: 21 GQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQ---RQPSGPEETFAKPVFIVPLKPEFK 77
++ + + + GL G E V +
Sbjct: 197 LEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV-QVNVSFPASVQL 255
Query: 78 LGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA-------DFGFVTLDLTE 130
+ H P + W+FNG L S T L L +
Sbjct: 256 HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQ 315
Query: 131 VYDRDQGIYTCRAWNLAGETFTSTTI 156
+ G YT A N G+ S
Sbjct: 316 PTHVNNGNYTLLAANPFGQASASIMA 341
Score = 47.8 bits (113), Expect = 8e-06
Identities = 10/95 (10%), Positives = 22/95 (23%), Gaps = 6/95 (6%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN-RVKMVSDFG 360
P + + + GD C + + W + + G
Sbjct: 157 GVPTLKVQVPNAS-VDVGDDVLLRCQVE--GRGLEQAGWILTELEQSATVMKSGGLPSLG 213
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ ++ + C A N G +
Sbjct: 214 LTLANVT--SDLNRKNVTCWAENDVGRAEVSVQVN 246
Score = 43.6 bits (102), Expect = 2e-04
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 692 PQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASH-RIRTVHAFG 748
P + + ++ G+ + G ++ A+ + + + G
Sbjct: 159 PTLKVQVPNA-SVDVGDDVLLRCQVE----GRGLEQAGWILTELEQSATVMKSGGLPSLG 213
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ + + T + TC A N G+AE+SV +
Sbjct: 214 LTLANV--TSDLNRKNVTCWAENDVGRAEVSVQV 245
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 73.5 bits (181), Expect = 4e-16
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
K F+ +S+E + G A FE +KV W G I N+ + ++
Sbjct: 4 GKKPVSAFSKKPRSVE-VAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGLATE 59
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + V D G Y A G + +K
Sbjct: 60 GTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLK 92
Score = 68.9 bits (169), Expect = 2e-14
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
F + V + G A FEA + V W G + ++Y +
Sbjct: 9 SAFSKKPRSVE-VAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGLATEGTRHT 64
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L + + G Y A GS K LK
Sbjct: 65 LTVREVGPADQGSYAVIA----GSSKVKFDLK 92
Score = 59.3 bits (144), Expect = 4e-11
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
F + ++ P EA+ E +K+ W G + +++ +
Sbjct: 7 PVSAFSKKPRSV-EVAAGSPAVFEAETE---RAGVKVRWQRGGSDISASNKYGLATEGTR 62
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
TL + EV DQG Y AG + +
Sbjct: 63 HTLTVREVGPADQGSYAVI----AGSSKVKFDL 91
Score = 58.5 bits (142), Expect = 6e-11
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 195 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 254
P+ F+ + + + ++ G A FEA + V + G I AS++
Sbjct: 1 PEPGKKPVSAFSKKPRSVE-VAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGL 56
Query: 255 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
L + D G Y A + + ++ V
Sbjct: 57 ATEGTRHTLTVREVGPADQGSYAVIAGSSKVKFDLKV 93
Score = 58.5 bits (142), Expect = 6e-11
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 684 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 743
P+ F+ + + + ++ G A FEA + V + G I AS++
Sbjct: 1 PEPGKKPVSAFSKKPRSVE-VAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGL 56
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
L + D G Y A + + ++ V
Sbjct: 57 ATEGTRHTLTVREVGPADQGSYAVIAGSSKVKFDLKV 93
Score = 52.3 bits (126), Expect = 9e-09
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 12/79 (15%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
A + + +V W G + ++Y + L + + G
Sbjct: 25 PAVFEAETERAG-------VKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGS 77
Query: 642 YECRATNKYGSDVTKASLK 660
Y A GS K LK
Sbjct: 78 YAVIA----GSSKVKFDLK 92
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 73.9 bits (182), Expect = 4e-16
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 285 GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNG 344
S L + P KFT +++ E +G +A C L+ VEW+
Sbjct: 5 SSGRTSAMLTV----RALPIKFTEGLRNEE-ATEGATAVLRCELSK--MAP--VEWWKGH 55
Query: 345 KPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + +R + D + I + + D+GEY+C G++ T A +
Sbjct: 56 ETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAML 101
Score = 68.5 bits (168), Expect = 3e-14
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
A KF + + EG +A L+ VEW+ + L G R+ D
Sbjct: 16 RALPIKFTEGLRNEE-ATEGATAVLRCELSK--MAP--VEWWKGHETLRDGDRHSLRQDG 70
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
L I E++G Y C G + T A L
Sbjct: 71 ARCELQIRGLVAEDAGEYLCMC----GKERTSAML 101
Score = 62.8 bits (153), Expect = 4e-12
Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 17/111 (15%)
Query: 200 GRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 257
P +FT + L N EG A L + VE+ + + R
Sbjct: 17 ALPIKFT---EGLRNEEATEGATAVLRCELSKMA----PVEWWKGHETLRDGDRHSLRQD 69
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS 308
L+I G ED G Y C + A ++V + P +S
Sbjct: 70 GARCELQIRGLVAEDAGEYLCMCGKERTSAMLTV--------RAMPSGPSS 112
Score = 60.1 bits (146), Expect = 3e-11
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 689 GRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 746
P +FT + L N EG A L + VE+ + + R
Sbjct: 17 ALPIKFT---EGLRNEEATEGATAVLRCELSKMA----PVEWWKGHETLRDGDRHSLRQD 69
Query: 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
L+I G ED G Y C + A ++V
Sbjct: 70 GARCELQIRGLVAEDAGEYLCMCGKERTSAMLTV 103
Score = 54.3 bits (131), Expect = 3e-09
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
A L+C +SK VEW+ + L G R+ D L I E++G
Sbjct: 36 TAVLRCELSKM--------APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGE 87
Query: 642 YECRATNKYGSDVTKASL 659
Y C G + T A L
Sbjct: 88 YLCMC----GKERTSAML 101
Score = 53.1 bits (128), Expect = 8e-09
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
F L+ E + E L ++ +EW + L G R D
Sbjct: 20 IKFTEGLRNE-EATEGATAVLRCELSK--MA--PVEWWKGHETLRDGDRHSLRQDGARCE 74
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L + + D G Y C G+ TS +
Sbjct: 75 LQIRGLVAEDAGEYLCM----CGKERTSAMLT 102
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 76.6 bits (188), Expect = 5e-16
Identities = 25/146 (17%), Positives = 38/146 (26%), Gaps = 9/146 (6%)
Query: 250 HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSH 309
H G + + ++ D G Y C+ G A L V P T
Sbjct: 73 HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLT-VLV----KPSGTRC 127
Query: 310 IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYV 369
+ G+ +C L+ EW + +
Sbjct: 128 FVDGS-EEIGNDFKLKCE-PKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVIS--VKNA 183
Query: 370 QSHDSGEYVCRAWNKYGEDFTRATIK 395
S SG Y C N+ G D +
Sbjct: 184 SSEYSGTYSCTVQNRVGSDQCMLRLD 209
Score = 57.4 bits (138), Expect = 2e-09
Identities = 33/199 (16%), Positives = 55/199 (27%), Gaps = 51/199 (25%)
Query: 510 EGQSAHFE--ARLTPVTDPDLVVEWF---------------YNGKKLPHG---------H 543
+G++A+ L+P L +EW Y+G K+ H
Sbjct: 14 KGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVH 73
Query: 544 RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV---SKTNLILESQL 600
G +++ + G Y+C+ G K L + S T ++
Sbjct: 74 FTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSE 133
Query: 601 ------------------PEVEWFYNGKKLPHGHRYRTFHDFG-IVILDILYCYEENSGV 641
+ EW + I + + E SG
Sbjct: 134 EIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNAS---SEYSGT 190
Query: 642 YECRATNKYGSDVTKASLK 660
Y C N+ GSD L
Sbjct: 191 YSCTVQNRVGSDQCMLRLD 209
Score = 54.7 bits (131), Expect = 1e-08
Identities = 34/237 (14%), Positives = 58/237 (24%), Gaps = 61/237 (25%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWF---------------YNGKKLPHG------- 615
G L C + + ++EW Y+G K+
Sbjct: 15 GETAY---LPCKFTLS-PEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70
Query: 616 --HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL 673
H G +++ + G Y+C+ G K L +
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV---------- 120
Query: 674 PELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK 733
P T F S G + G + E+
Sbjct: 121 -----------------KPSGTRCFVDGS-EEIGNDFKLKCE-PKEGSLPLQFEWQKLSD 161
Query: 734 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790
V+ + E +G Y+C N+ G + + L+ V PS
Sbjct: 162 SQTMPTPWLAEMTSP--VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD--VVPPS 214
Score = 45.8 bits (108), Expect = 1e-05
Identities = 32/251 (12%), Positives = 60/251 (23%), Gaps = 70/251 (27%)
Query: 69 IVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--------------- 112
P + E GE L + + P++ L IEW+ + ++
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 113 ---------SRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKES 163
G ++++T + D G Y C+ G +
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLL------- 116
Query: 164 LIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 223
+ P T F S G
Sbjct: 117 ---------------TVLV-------------------KPSGTRCFVDGS-EEIGNDFKL 141
Query: 224 EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 283
+ G + E+ V+ + E +G Y+C N+
Sbjct: 142 KCE-PKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VISVKNASSEYSGTYSCTVQNR 198
Query: 284 WGQAEISVNLE 294
G + + L+
Sbjct: 199 VGSDQCMLRLD 209
Score = 42.4 bits (99), Expect = 2e-04
Identities = 18/97 (18%), Positives = 25/97 (25%), Gaps = 6/97 (6%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
V P D + + G + L EW +
Sbjct: 118 VLVKPSGTRCFVDGS-EEIGNDFKLKCE-PKEGSLPLQFEWQKLSDSQTMPTPWLAEMTS 175
Query: 552 G-IVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
I + + E SG Y C N+ GSD L
Sbjct: 176 PVISVKNAS---SEYSGTYSCTVQNRVGSDQCMLRLD 209
Score = 42.0 bits (98), Expect = 3e-04
Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 14/139 (10%)
Query: 27 LETQHPMGAAGLEKVQEVEHALAGKYQ---RQPSGPEETFA------KPVFIVPLKPEFK 77
G A + V ++ + G YQ ++ G KP
Sbjct: 75 TSNDVKSGDASI-NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDG-S 132
Query: 78 LGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQG 137
L+ + + + L+ EW + + + + + G
Sbjct: 133 EEIGNDFKLKCEPK-EGSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VISVKNASSEYSG 189
Query: 138 IYTCRAWNLAGETFTSTTI 156
Y+C N G +
Sbjct: 190 TYSCTVQNRVGSDQCMLRL 208
Score = 39.7 bits (92), Expect = 0.002
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 739 HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTK 793
H G + + ++ D G Y C+ G A L V+ PS T+
Sbjct: 73 HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLT-VLVKPSGTR 126
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 72.8 bits (179), Expect = 8e-16
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360
G ++S + GD C + D + W +G + NR ++ +
Sbjct: 1 GSSGSSGVEVESFL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTRITGE-- 54
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+++ DSG Y C + G D T ++
Sbjct: 55 --EVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86
Score = 67.0 bits (164), Expect = 7e-14
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ ++ + G + D + W +G +L +R R
Sbjct: 1 GSSGSSGVEVESFL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTR----IT 52
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+++ +SG+Y C ++ GSD T S+
Sbjct: 53 GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86
Score = 64.3 bits (157), Expect = 6e-13
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 8/105 (7%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
G E + + G++ + D ++ +L +G + S+R R
Sbjct: 1 GSSGSSGVEVESFL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTR----IT 52
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
+E+ + D+G+Y C ++ G ++ D P
Sbjct: 53 GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPS 97
Score = 62.8 bits (153), Expect = 3e-12
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
G E + + G++ + D ++ +L +G + S+R R
Sbjct: 1 GSSGSSGVEVESFL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTR----IT 52
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+E+ + D+G+Y C ++ G ++
Sbjct: 53 GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86
Score = 61.3 bits (149), Expect = 8e-12
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+ V ++ F + L L ++ D I W+ +G L +R + T +
Sbjct: 2 SSGSSGVEVES-FLVHPGDLLQLRCRLR---DDVQSINWLRDGVQLAESNRTRITGE--- 54
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+++ + D G+Y C + +G T ++
Sbjct: 55 -EVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86
Score = 55.1 bits (133), Expect = 1e-09
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
G + L+C L + + W +G +L +R R +++
Sbjct: 18 GDLLQ---LRCR------LRDDVQSINWLRDGVQLAESNRTR----ITGEEVEVQDSVPA 64
Query: 638 NSGVYECRATNKYGSDVTKASL 659
+SG+Y C ++ GSD T S+
Sbjct: 65 DSGLYACVTSSPSGSDTTYFSV 86
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 75.9 bits (186), Expect = 9e-16
Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 9/126 (7%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
L ++D GVYT T+ + P +++ + DS
Sbjct: 73 LLFQMITMKDMGVYTLDMTD-ENYRRTQATVRFHVHQPVTQPFLQVTNTTVK---ELDSV 128
Query: 323 HFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAW 382
C ND ++W N + + R+ + + ++ I ++ D+GEY C
Sbjct: 129 TLTCL---SNDIGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEIS 183
Query: 383 NKYGED 388
N
Sbjct: 184 NPVSVR 189
Score = 55.1 bits (132), Expect = 1e-08
Identities = 21/164 (12%), Positives = 44/164 (26%), Gaps = 45/164 (27%)
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLE 184
+L + +D G+YT + T T+ + + +
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRR-TQATVRFHVHQPVTQPFLQVTN----------- 119
Query: 185 ESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK 244
+ + E + D +++L+N +
Sbjct: 120 ----------------------------TTVKELDSVTLTCL---SNDIGANIQWLFNSQ 148
Query: 245 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288
++ + R+ +L I K ED G Y C +N
Sbjct: 149 SLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRR 190
Score = 53.5 bits (128), Expect = 3e-08
Identities = 24/191 (12%), Positives = 49/191 (25%), Gaps = 47/191 (24%)
Query: 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP-------------------HGHRYR 546
Q+ E + P+ W+ + R
Sbjct: 9 PQVAEDNNVLLLVHNLPLALGA--FAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREI 66
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL------ 600
+ + ++ I ++ GVY T++ V + Q+
Sbjct: 67 IYSNGSLLFQMI---TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVK 123
Query: 601 ---------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 645
++W +N + L R + IL I E++G Y+C
Sbjct: 124 ELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCE 181
Query: 646 ATNKYGSDVTK 656
+N +
Sbjct: 182 ISNPVSVRRSN 192
Score = 53.5 bits (128), Expect = 4e-08
Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 36/181 (19%)
Query: 614 HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL 673
+ R + + ++ I ++ GVY T++ V + Q+
Sbjct: 61 YSGREIIYSNGSLLFQMI---TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQV 117
Query: 674 PELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK 733
+ + E + D +++L+N +
Sbjct: 118 TN--------------------------TTVKELDSVTLTCL---SNDIGANIQWLFNSQ 148
Query: 734 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVNLECVVWSPSQT 792
++ + R+ +L I K ED G Y C +N S+ L+ +++ P
Sbjct: 149 SLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD-IIFDPHHH 205
Query: 793 K 793
Sbjct: 206 H 206
Score = 52.7 bits (126), Expect = 8e-08
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 94 NDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153
ND I+W+FN + L+L R + + L + + D G Y C N S
Sbjct: 135 NDIGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVR-RS 191
Query: 154 TTIY 157
+I
Sbjct: 192 NSIK 195
Score = 49.3 bits (117), Expect = 1e-06
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 6/101 (5%)
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG 542
Q + + Q+++ T +KE S D ++W +N + L
Sbjct: 98 TQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCL---SNDIGANIQWLFNSQSLQLT 153
Query: 543 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 583
R + I L I E++G Y+C +N +
Sbjct: 154 ERMTLSQNNSI--LRIDPIKREDAGEYQCEISNPVSVRRSN 192
Score = 31.9 bits (72), Expect = 0.51
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKL 794
L ++D GVYT T++ + + V +Q L
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFL 115
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 72.0 bits (177), Expect = 1e-15
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
S K + + + G +C ++ + +W NG P+ +R+K+V
Sbjct: 3 SGSSGLKILTPLTDQT-VNLGKEICLKCEISE--NIP--GKWTKNGLPVQESDRLKVVQK 57
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ IA + D G+YV A +
Sbjct: 58 GRIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVH 92
Score = 65.8 bits (161), Expect = 2e-13
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ K +T ++D T + G+ + ++ ++ +W NG + R +
Sbjct: 5 SSGLKILTPLTDQT-VNLGKEICLKCEISE----NIPGKWTKNGLPVQESDRLKVVQKGR 59
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
I L I E+ G Y + A +
Sbjct: 60 IHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVH 92
Score = 61.6 bits (150), Expect = 5e-12
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
S + + + ++ G+ + + + ++ NG P++ S R++ V
Sbjct: 2 SSGSSGLKILTPLTDQT-VNLGKEICLKCEISE----NIPGKWTKNGLPVQESDRLKVVQ 56
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ L I ED G Y V++
Sbjct: 57 KGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVI 94
Score = 61.6 bits (150), Expect = 5e-12
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
S + + + ++ G+ + + + ++ NG P++ S R++ V
Sbjct: 2 SSGSSGLKILTPLTDQT-VNLGKEICLKCEISE----NIPGKWTKNGLPVQESDRLKVVQ 56
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ L I ED G Y V++
Sbjct: 57 KGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVI 94
Score = 52.3 bits (126), Expect = 1e-08
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 11/79 (13%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
+ LKC +S+ +W NG + R + I L I E+ G
Sbjct: 24 EICLKCEISEN--------IPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGD 75
Query: 642 YECRATNKYGSDVTKASLK 660
Y + A +
Sbjct: 76 YVFAPDA--YNVTLPAKVH 92
Score = 51.6 bits (124), Expect = 2e-08
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+ + PL + + + + L+ ++ N+ +W NG P++ R K
Sbjct: 6 SGLKILTPLTDQ-TVNLGKEICLKCEI----SENIPGKWTKNGLPVQESDRLKVVQKGRI 60
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
L + D+G Y A
Sbjct: 61 HKLVIANALTEDEGDYVFA--PDAYNVTLPAK 90
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 74.2 bits (182), Expect = 2e-15
Identities = 23/187 (12%), Positives = 51/187 (27%), Gaps = 29/187 (15%)
Query: 217 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV-------LEILGTK 269
G + + D V + + R L+I
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 270 IEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT 329
+D+G Y + G ++ L+ P + +A C +
Sbjct: 70 RDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYW---------ECSNATLTCEVL 120
Query: 330 PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDF 389
D ELK + + + + ++Y ++ + C+A N+ ++
Sbjct: 121 EGTDVELK--LYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQES 167
Query: 390 TRATIKC 396
+ C
Sbjct: 168 EMEVVNC 174
Score = 65.4 bits (159), Expect = 2e-12
Identities = 24/179 (13%), Positives = 53/179 (29%), Gaps = 41/179 (22%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKL----------PHGHRYRTFHDFGIVILDIL 559
G + +TD V W + + + + I ++
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNL- 68
Query: 560 YCYEENSGVYECRATNKYGSDVTKASL-----KCVSK-------TNLIL-----ESQLPE 602
++SG Y + G+ + +L + VSK +N L E E
Sbjct: 69 --TRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVE 126
Query: 603 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 661
++ + + L + + Y + ++C+A N+ + + C
Sbjct: 127 LKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 48.0 bits (114), Expect = 2e-06
Identities = 22/219 (10%), Positives = 54/219 (24%), Gaps = 67/219 (30%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKL----------PHGHRYRTFHDFGIV 627
G + L N + + EV W + + + +
Sbjct: 11 GHGIN---LNI---PNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLK 64
Query: 628 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSE 687
I ++ ++SG Y + G+ + +L +L + +
Sbjct: 65 IKNL---TRDDSGTYNVTVYSTNGTRILNKAL------DLRILEMVS------------- 102
Query: 688 DGRPPQFTSEFQHLSNLSEGEIAHFEASLI--PVGDQTMTVEFLYNGKPIEASHRIRTVH 745
P E A+L + + ++ + + + +
Sbjct: 103 ---KPMIYWECS-------------NATLTCEVLEGTDVELKLYQGKEHLRSLRQ----- 141
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784
+ + C+A N+ Q + C
Sbjct: 142 ------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 46.1 bits (109), Expect = 7e-06
Identities = 5/66 (7%), Positives = 20/66 (30%), Gaps = 11/66 (16%)
Query: 94 NDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153
+++++ + L + ++ + + + C+A N +
Sbjct: 121 EGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEM 169
Query: 154 TTIYCS 159
+ C
Sbjct: 170 EVVNCP 175
Score = 39.9 bits (93), Expect = 9e-04
Identities = 15/116 (12%), Positives = 28/116 (24%), Gaps = 17/116 (14%)
Query: 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV-------LEILGTK 758
G + + D V + + R L+I
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 759 IEDTGVYTCRATNKWGQ--AEISVNLEC--------VVWSPSQTKLVYSLFEVPQP 804
+D+G Y + G +++L + W S L + E
Sbjct: 70 RDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDV 125
Score = 37.6 bits (87), Expect = 0.005
Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 13/85 (15%)
Query: 82 QPLHLEAQVEPKNDPNLKIEWIFNGKPL----------ELGSRFKTTADFGFVTLDLTEV 131
++L D ++ W + F+ A+ L + +
Sbjct: 12 HGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIKNL 68
Query: 132 YDRDQGIYTCRAWNLAGETFTSTTI 156
D G Y ++ G + +
Sbjct: 69 TRDDSGTYNVTVYSTNGTRILNKAL 93
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 72.4 bits (178), Expect = 2e-15
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 285 GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNG 344
G + E + P F +S + + +GDS EC ++ P K+ W N
Sbjct: 2 GHHHHHHSHE-----HKRAPMFIYKPQSKK-VLEGDSVKLECQIS--AIPPPKLFWKRNN 53
Query: 345 KPI-FHKNRVKMVSD-FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + F+ +R+ + D G V + I V D+G Y A N+ G +
Sbjct: 54 EMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
Score = 72.0 bits (177), Expect = 2e-15
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 482 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKL- 539
G + AP FI + + EG S E + ++ P + W N + +
Sbjct: 2 GHHHHHHSHEHKRAPMFIYKPQSKK-VLEGDSVKLECQ---ISAIPPPKLFWKRNNEMVQ 57
Query: 540 PHGHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ R + D G V L I ++++G Y A N+ G L
Sbjct: 58 FNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
Score = 64.0 bits (156), Expect = 1e-12
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
Query: 198 EDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTV 255
E R P F + Q + EG+ E + + N + ++ +
Sbjct: 11 EHKRAPMFIYKPQSKK-VLEGDSVKLECQ--ISAIPPPKLFWKRNNEMVQFNTDRISLYQ 67
Query: 256 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFT 307
G V L I +D G YT A N+ G + L+ V P T
Sbjct: 68 DNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD-VT----ARPNQT 114
Score = 63.6 bits (155), Expect = 2e-12
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 52 YQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQV--EPKNDPNLKIEWIFNGKPL 109
E P+FI + + K+ E + LE Q+ P P K+ W N + +
Sbjct: 2 GHHHHHHSHEHKRAPMFIYKPQSK-KVLEGDSVKLECQISAIPP--P--KLFWKRNNEMV 56
Query: 110 ELGSRFKTTA--DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ + + + G VTL + +V +D G YT A N AG T +T +
Sbjct: 57 QFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
Score = 63.6 bits (155), Expect = 2e-12
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 687 EDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTV 744
E R P F + Q + EG+ E + + N + ++ +
Sbjct: 11 EHKRAPMFIYKPQSKK-VLEGDSVKLECQ--ISAIPPPKLFWKRNNEMVQFNTDRISLYQ 67
Query: 745 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
G V L I +D G YT A N+ G + L+ V +
Sbjct: 68 DNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD--VTAR 110
Score = 57.4 bits (139), Expect = 3e-10
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 601 PEVEWFYNGKKL-PHGHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
P++ W N + + + R + D G V L I ++++G Y A N+ G
Sbjct: 45 PKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTR 104
Query: 659 L 659
L
Sbjct: 105 L 105
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 74.1 bits (182), Expect = 2e-15
Identities = 27/174 (15%), Positives = 54/174 (31%), Gaps = 35/174 (20%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
D+ +F + + + F L+I K +D +Y + G+ +
Sbjct: 39 SDKKKIAQFRKEKETFKEKDTYKL---FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLE 95
Query: 291 VN-----LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGK 345
E V K PK + + C + N + ++ + +GK
Sbjct: 96 KIFDLKIQERVSK-----PKISW---------TCINTTLTCEVM--NGTDPELNLYQDGK 139
Query: 346 PIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+ RV + S ++ C A NK ++ + + C K
Sbjct: 140 HLKLSQRVITHK-----------WTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
Score = 64.9 bits (158), Expect = 3e-12
Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 43/183 (23%)
Query: 511 GQSAHFEARLTPVTDPDLVVEWFYNGKK------------LPHGHRYRTFHDFGIVILDI 558
GQ + + ++D ++W K Y+ F + + I +
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 559 LYCYEENSGVYECRATNKYGSDVTKAS-----LKCVSK-------TNLIL-----ESQLP 601
++ +Y+ + G +V + + VSK N L P
Sbjct: 74 K---TDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDP 130
Query: 602 EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 661
E+ + +GK L R ++ S ++C A NK + + + C
Sbjct: 131 ELNLYQDGKHLKLSQR--------VITHKWT---TSLSAKFKCTAGNKVSKESSVEPVSC 179
Query: 662 VSK 664
K
Sbjct: 180 PEK 182
Score = 50.3 bits (120), Expect = 3e-07
Identities = 23/219 (10%), Positives = 60/219 (27%), Gaps = 65/219 (29%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKK------------LPHGHRYRTFHDFG 625
G D+ L + + + +++W K Y+ F +
Sbjct: 14 GQDIN---LDI---PSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 626 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPD 685
+ I + ++ +Y+ + G +V + +L ++ ++ +
Sbjct: 68 LKIKHLK---TDDQDIYKVSIYDTKGKNVLEKIF------DLKIQERVSK---------- 108
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
P+ + + + + +GK ++ S R+ T
Sbjct: 109 ------PKISWT---------CINTTLTCEV--MNGTDPELNLYQDGKHLKLSQRVITHK 151
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784
+ + C A NK + + C
Sbjct: 152 W-----------TTSLSAKFKCTAGNKVSKESSVEPVSC 179
Score = 48.0 bits (114), Expect = 2e-06
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 67 VFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTL 126
+ KP+ L +V N + ++ +GK L+L R +
Sbjct: 102 IQERVSKPKISW-TCINTTLTCEVM--NGTDPELNLYQDGKHLKLSQR-----------V 147
Query: 127 DLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTK 161
+ + C A N + + + C K
Sbjct: 148 ITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
Score = 47.2 bits (112), Expect = 4e-06
Identities = 9/89 (10%), Positives = 28/89 (31%), Gaps = 15/89 (16%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNG------------KPIFHKNRVKMVSDFGFVVMDI 366
G + + ++D ++W + K+ K+ + + I
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKI 70
Query: 367 AYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
++++ D Y ++ G++
Sbjct: 71 KHLKTDDQDIYKVSIYDTKGKNVLEKIFD 99
Score = 40.3 bits (94), Expect = 7e-04
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 15/87 (17%)
Query: 82 QPLHLEAQVEPKNDPNLKIEWIFNG------------KPLELGSRFKTTADFGFVTLDLT 129
Q ++L+ +D I+W + + +K + TL +
Sbjct: 15 QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIK 71
Query: 130 EVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ DQ IY ++ G+
Sbjct: 72 HLKTDDQDIYKVSIYDTKGKNVLEKIF 98
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 71.3 bits (175), Expect = 2e-15
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
K K + ++ + G SA C V + +V W+ +GK + ++V++ +
Sbjct: 8 KVVFAKEQPAHREVQ-AEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKVRVEAVG 63
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI----KCFG 398
+ + ++GEY C A G + +CFG
Sbjct: 64 CTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQCFG 102
Score = 66.7 bits (163), Expect = 1e-13
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 8/97 (8%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
K +V + G SA V V W+ +GKKL + R
Sbjct: 12 AKEQPAHREVQ-AEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRR 67
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT 592
L + + +G Y C A G L+ +
Sbjct: 68 LVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQC 100
Score = 59.3 bits (144), Expect = 4e-11
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 11/102 (10%)
Query: 58 GPEETFAKPVFIVPLKPEFK---LGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR 114
G + K VF +P + L +V ++ W +GK L S+
Sbjct: 1 GSSGSSGKVVF-AKEQPAHREVQAEAGASATLSCEV---AQAQTEVTWYKDGKKLSSSSK 56
Query: 115 FKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ A L + + + G Y+C AG S +
Sbjct: 57 VRVEAVGCTRRLVVQQAGQAEAGEYSCE----AGGQQLSFRL 94
Score = 58.6 bits (142), Expect = 7e-11
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
F E + G A V V + +GK + +S ++R
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKVRVEAVGC 64
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
L + + G Y+C A + + V
Sbjct: 65 TRRLVVQQAGQAEAGEYSCEAGGQQLSFRLQV 96
Score = 58.6 bits (142), Expect = 7e-11
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
F E + G A V V + +GK + +S ++R
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKVRVEAVGC 64
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
L + + G Y+C A + + V
Sbjct: 65 TRRLVVQQAGQAEAGEYSCEAGGQQLSFRLQV 96
Score = 54.7 bits (132), Expect = 2e-09
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
A+L C + EV W+ +GKKL + R L + + +G Y
Sbjct: 28 SATLSCE------VAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEY 81
Query: 643 ECRATNKYGSDVTKASLKCVSKT 665
C A G L+ +
Sbjct: 82 SCEA----GGQQLSFRLQVAGQC 100
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 71.6 bits (176), Expect = 2e-15
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P T ++++ G+S CT + +P ++ WF + + + + + + +
Sbjct: 10 APTITGNLENQT-TSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGNRNL 66
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
I V+ D G Y C+A + G A
Sbjct: 67 T--IRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
Score = 66.2 bits (162), Expect = 2e-13
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHD 550
AP + + T G+S + +P + WF + + L
Sbjct: 7 ERVAPTITGNLENQT-TSIGESIEVSCT---ASGNPPPQIMWFKDNETLVEDSGIVLKD- 61
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
G L I +E+ G+Y C+A + G +A
Sbjct: 62 -GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
Score = 63.1 bits (154), Expect = 3e-12
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
P L+ + + + + +P +I W + + L S
Sbjct: 9 VAPTITGNLENQ-TTSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGNR- 64
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L + V D+G+YTC+A ++ G
Sbjct: 65 -NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
Score = 58.1 bits (141), Expect = 1e-10
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 14/109 (12%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
P T +L N + GE + G+ + + + + + I G
Sbjct: 10 APTIT---GNLENQTTSIGESIEVSCTA--SGNPPPQIMWFKDNETLVEDSGIVLKD--G 62
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS 308
L I + ED G+YTC+A + G A++ ++ + T+
Sbjct: 63 NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI-IE----GAQEKTN 106
Score = 57.7 bits (140), Expect = 2e-10
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
P T +L N + GE + G+ + + + + + I G
Sbjct: 10 APTIT---GNLENQTTSIGESIEVSCTA--SGNPPPQIMWFKDNETLVEDSGIVLKD--G 62
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKL 794
L I + ED G+YTC+A + G A++ + + +T L
Sbjct: 63 NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI-IEGAQEKTNL 107
Score = 53.9 bits (130), Expect = 4e-09
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P++ WF + + L G L I +E+ G+Y C+A + G +A
Sbjct: 40 PQIMWFKDNETLVEDSGIVLKD--GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 77.1 bits (189), Expect = 3e-15
Identities = 35/267 (13%), Positives = 66/267 (24%), Gaps = 52/267 (19%)
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLE 184
T+ L+ + D+G+Y C S +L + EG + + +
Sbjct: 93 TIRLSRLELEDEGVYICEFATFPTGNRESQL-------NLTVMAKPTNWIEGTQAVLRAK 145
Query: 185 ESLRRQPAGVP-DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
+ + S +G+PP +
Sbjct: 146 KGQDDKVLVATCTSANGKPP---------------------------SVVSWETRLKGEA 178
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQP 303
+ E + TV ++ ++ C + + S+ L V
Sbjct: 179 EYQEIRNPNGTVTVIS--RYRLVPSREAHQQSLACIVNYHMDRFKESLTLN-VQ----YE 231
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLT--PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
P+ T C P P + W + K V
Sbjct: 232 PEVTIEGFDGNWYLQRMDVKLTCKADANP---PATEYHWTTLNGSL-----PKGVEAQNR 283
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGED 388
+ + +G Y+C A N G
Sbjct: 284 TLFFKGPINYSLAGTYICEATNPIGTR 310
Score = 72.5 bits (177), Expect = 7e-14
Identities = 43/318 (13%), Positives = 88/318 (27%), Gaps = 49/318 (15%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE--LKVEWFHNGKPIF------------ 348
P + S+ G G C+ +V W +
Sbjct: 14 PSQVVQVNDSMYGFI-GTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV 72
Query: 349 -----HKNRVKMVSD-FGFVVMDIAYVQSHDSGEYVCRAWN-KYGEDFTRATIKCFGKGG 401
++ RV+ + F + ++ ++ D G Y+C G ++ + K
Sbjct: 73 SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPT 132
Query: 402 VYLDSLQPE-SLARIRELENAQGQQPVAQAAPVAE-----APKFITQISDVTQLKEGQSA 455
+++ Q + ++ + A P + K + ++ +
Sbjct: 133 NWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV 192
Query: 456 HFEARLTPVTDPD---LVCELFSNFFPSQGQQPVAQAAP--VAEAPKFITQISDVTQLKE 510
RL P + L C + + ++ V P+ + D +
Sbjct: 193 ISRYRLVPSREAHQQSLACIV------NYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQ 246
Query: 511 GQSAHFE--ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 568
A P P W LP G + F ++ +G
Sbjct: 247 RMDVKLTCKADANP---PATEYHWTTLNGSLPKGVEAQNRTLFFKGPIN-----YSLAGT 298
Query: 569 YECRATNKYGSDVTKASL 586
Y C ATN G+ + +
Sbjct: 299 YICEATNPIGTRSGQVEV 316
Score = 64.0 bits (155), Expect = 5e-11
Identities = 42/351 (11%), Positives = 75/351 (21%), Gaps = 92/351 (26%)
Query: 486 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLV--VEWFYNGKKL---- 539
+ + P + Q++D G + V W +
Sbjct: 4 MTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNV 63
Query: 540 -------------PHGHRYR----TFHDFGIVILDILYCYEENSGVYECRA-TNKYGSDV 581
P+ R +F D I + + E+ GVY C T G+
Sbjct: 64 AIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLE---LEDEGVYICEFATFPTGNRE 120
Query: 582 TKASLKCVSKTNLILESQ--------------------------LPEVEWFYNGKKLPHG 615
++ +L ++K +E V W K
Sbjct: 121 SQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY 180
Query: 616 HRYRTFHDFGIV--ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL 673
R + V ++ E + C +L +
Sbjct: 181 QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLN-------VQY--- 230
Query: 674 PELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYN 731
P+ T E + + A P +
Sbjct: 231 -----------------EPEVTIEGFDGNWYLQRMDVKLTCKADANP---PATEYHWTTL 270
Query: 732 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ + + G Y C ATN G V +
Sbjct: 271 NGSLPKGVEAQNRT-----LFFKGPINYSLAGTYICEATNPIGTRSGQVEV 316
Score = 51.7 bits (123), Expect = 5e-07
Identities = 38/271 (14%), Positives = 66/271 (24%), Gaps = 39/271 (14%)
Query: 419 ENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD---LVCELFS 475
+Q VA P + + + + RL+ + D +CE +
Sbjct: 55 STNGSKQNVAIYNP-SMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFAT 113
Query: 476 NFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT---DPDLVVEW 532
++ Q V P + + + T + P VV W
Sbjct: 114 FPTGNRESQLNLT---VMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSW 170
Query: 533 FYNGKKLPHGHRYRTFHDFGIV--ILDILYCYEENSGVYECRATNKYGSDVTKASLK--- 587
K R + V ++ E + C +L
Sbjct: 171 ETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY 230
Query: 588 ------CVSKTNLILESQL-------------PEVEWFYNGKKLPHGHRYRTFHDFGIVI 628
N L+ E W LP G + F
Sbjct: 231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGP 290
Query: 629 LDILYCYEENSGVYECRATNKYGSDVTKASL 659
++ +G Y C ATN G+ + +
Sbjct: 291 IN-----YSLAGTYICEATNPIGTRSGQVEV 316
Score = 51.3 bits (122), Expect = 7e-07
Identities = 34/292 (11%), Positives = 56/292 (19%), Gaps = 81/292 (27%)
Query: 40 KVQEVEHALAGKYQ----RQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEP--- 92
++ +E G Y P+G E+ V KP + Q + + +
Sbjct: 95 RLSRLELEDEGVYICEFATFPTGNRESQLN--LTVMAKPTNWIEGTQAVLRAKKGQDDKV 152
Query: 93 --------KNDPNLKIEWIFNGKPLELGSRFKTTADFGFV--TLDLTEVYDRDQGIYTCR 142
P + W K + V L + Q C
Sbjct: 153 LVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACI 212
Query: 143 AWNLAGETFTSTTI---YCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSED 199
S T+ Y
Sbjct: 213 VNYHMDRFKESLTLNVQY------------------------------------------ 230
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 257
P+ T E + + A P + + +
Sbjct: 231 --EPEVTIEGFDGNWYLQRMDVKLTCKADANP---PATEYHWTTLNGSLPKGVEAQNRT- 284
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSH 309
+ G Y C ATN G V + + H
Sbjct: 285 ----LFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE-----AAALEHH 327
Score = 44.7 bits (105), Expect = 7e-05
Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 51/228 (22%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKL-----------------PHGHRYR- 619
G+DV L C S N + ++ +V W + P+ R
Sbjct: 29 GTDVV---LHC-SFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEF 84
Query: 620 ---TFHDFGIVILDILYCYEENSGVYECRA-TNKYGSDVTKASLKCVSKTNLILESQLPE 675
+F D I + + E+ GVY C T G+ ++ +L ++K +E
Sbjct: 85 LRPSFTDGTIRLSRLE---LEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAV 141
Query: 676 LRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI 735
LR + +D + T + G+ P + +
Sbjct: 142 LRAKKG-----QDDKVLVATCT------SANGK---------PPSVVSWETRLKGEAEYQ 181
Query: 736 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
E + TV ++ ++ C + + S+ L
Sbjct: 182 EIRNPNGTVTVIS--RYRLVPSREAHQQSLACIVNYHMDRFKESLTLN 227
Score = 31.6 bits (71), Expect = 0.87
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 721 DQTMTVEFLYNGKPIEASHRIR---TVHAFGMVVLEILGTKIEDTGVYTCRA-TNKWGQA 776
Q + + G + A +R R +F + + ++ED GVY C T G
Sbjct: 60 KQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNR 119
Query: 777 EISVNLECVV 786
E +NL +
Sbjct: 120 ESQLNLTVMA 129
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 70.8 bits (174), Expect = 3e-15
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH--KNRVKMV 356
S T ++ G+ EC V++ + V+WF NG+ I K+R ++
Sbjct: 3 SGSSGIMVTKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIR 58
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+ ++ I D+ EY + A + K
Sbjct: 59 VEGKKHILIIEGATKADAAEYSVMT----TGGQSSAKLSVDLK 97
Score = 66.2 bits (162), Expect = 2e-13
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTFHD 550
+ Q+ D T G+ E V++ D V+WF NG+++ G RYR +
Sbjct: 5 SSGIMVTKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVE 60
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
IL I + ++ Y T + A L
Sbjct: 61 GKKHILIIEGATKADAAEYSVMTTG----GQSSAKL 92
Score = 60.0 bits (146), Expect = 3e-11
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRT 254
S T + + + GE E V + V++ NG+ I R R
Sbjct: 2 SSGSSGIMVTKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRI 57
Query: 255 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+L I G D Y+ T A++SV+L
Sbjct: 58 RVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 96
Score = 60.0 bits (146), Expect = 3e-11
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRT 743
S T + + + GE E V + V++ NG+ I R R
Sbjct: 2 SSGSSGIMVTKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRI 57
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+L I G D Y+ T A++SV+L
Sbjct: 58 RVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 96
Score = 48.5 bits (116), Expect = 2e-07
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENS 639
+ L+C VS+ + V+WF NG+++ G RYR + IL I + ++
Sbjct: 24 RVELECEVSEDD-------ANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADA 76
Query: 640 GVYECRATNKYGSDVTKASL 659
Y T + A L
Sbjct: 77 AEYSVMTTG----GQSSAKL 92
Score = 48.1 bits (115), Expect = 4e-07
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--SRFKTTADF 121
+ + L+ + + LE +V ++ + ++W NG+ + G SR++ +
Sbjct: 6 SGIMVTKQLEDT-TAYCGERVELECEV---SEDDANVKWFKNGEEIIPGPKSRYRIRVEG 61
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWN 145
L + D Y+
Sbjct: 62 KKHILIIEGATKADAAEYSVMTTG 85
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 70.0 bits (172), Expect = 7e-15
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P ++ + G+ C L+ P V W + K I + +V +
Sbjct: 8 PAAIIKPLEDQW-VAPGEDVELRCELSRAGTP---VHWLKDRKAIRKSQKYDVVCEGTMA 63
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGE 387
++ I D+GEY C
Sbjct: 64 MLVIRGASLKDAGEYTCEVEASKST 88
Score = 67.3 bits (165), Expect = 7e-14
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF 548
++ + I + D + G+ ++ V W + K + +Y
Sbjct: 2 SSGSSGPAAIIKPLEDQW-VAPGEDVELRCE---LSRAGTPVHWLKDRKAIRKSQKYDVV 57
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGS 579
+ + +L I +++G Y C +
Sbjct: 58 CEGTMAMLVIRGASLKDAGEYTCEVEASKST 88
Score = 64.6 bits (158), Expect = 6e-13
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P + ++ GE + V +L + K I S + V M
Sbjct: 8 PAAIIKPLEDQW-VAPGEDVELRCE---LSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMA 63
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+L I G ++D G YTC A + V
Sbjct: 64 MLVIRGASLKDAGEYTCEVEASKSTASLHVE 94
Score = 64.6 bits (158), Expect = 6e-13
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P + ++ GE + V +L + K I S + V M
Sbjct: 8 PAAIIKPLEDQW-VAPGEDVELRCE---LSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMA 63
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
+L I G ++D G YTC A + V
Sbjct: 64 MLVIRGASLKDAGEYTCEVEASKSTASLHVE 94
Score = 57.7 bits (140), Expect = 1e-10
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + I PL+ + + + + L ++ + + W+ + K + ++
Sbjct: 1 GSSGSSGPAAIIKPLEDQ-WVAPGEDVELRCEL---SRAGTPVHWLKDRKAIRKSQKYDV 56
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
+ L + +D G YTC
Sbjct: 57 VCEGTMAMLVIRGASLKDAGEYTCEVEASKST 88
Score = 50.4 bits (121), Expect = 7e-08
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
L+C +S+ V W + K + +Y + + +L I +++G
Sbjct: 25 DVELRCELSRAG-------TPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGE 77
Query: 642 YECRATNKYGS 652
Y C +
Sbjct: 78 YTCEVEASKST 88
Score = 27.3 bits (61), Expect = 7.1
Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 5/40 (12%)
Query: 430 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLT----PVT 465
++ + I + D + G+ L+ PV
Sbjct: 2 SSGSSGPAAIIKPLEDQW-VAPGEDVELRCELSRAGTPVH 40
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 73.3 bits (180), Expect = 9e-15
Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 21/126 (16%)
Query: 274 GVYTCRATNKWGQAEISVNLECVDKSKGQPPKFT--SHIKSLEGLKDGDSAHFECTLTPV 331
Y ++ + S PK + + EG + + C +
Sbjct: 1 ATYAAASSALVPR-----------GSHMYAPKLQGPVAVYTWEG----NQVNITCEVFA- 44
Query: 332 NDPELKVEWFHNGKPIFHKN--RVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDF 389
P + WF +G+ + N +K+ + +++ +D G Y C A N+ G++
Sbjct: 45 -YPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQES 103
Query: 390 TRATIK 395
+
Sbjct: 104 LEFILV 109
Score = 65.6 bits (160), Expect = 3e-12
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 8/112 (7%)
Query: 479 PSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGK 537
+ + APK Q EG + V P + WF +G+
Sbjct: 3 YAAASSALVPRGSHMYAPKL--QGPVAVYTWEGNQVNITC---EVFAYPSATISWFRDGQ 57
Query: 538 KLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
LP + ++ L++ E + G Y C A N+ G + + L
Sbjct: 58 LLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
Score = 64.1 bits (156), Expect = 1e-11
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 11/112 (9%)
Query: 683 VPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-- 738
VP P + Q + EG + + T+ + +G+ + +S
Sbjct: 11 VPRGSHMYAP----KLQGPVAVYTWEGNQVNITCE--VFAYPSATISWFRDGQLLPSSNY 64
Query: 739 HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790
I+ + LE+ D G Y C A N+ GQ + L +PS
Sbjct: 65 SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV-QADTPS 115
Score = 62.9 bits (153), Expect = 3e-11
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 10/109 (9%)
Query: 194 VPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-- 249
VP P + Q + EG + + T+ + +G+ + +S
Sbjct: 11 VPRGSHMYAP----KLQGPVAVYTWEGNQVNITCE--VFAYPSATISWFRDGQLLPSSNY 64
Query: 250 HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
I+ + LE+ D G Y C A N+ GQ + L D
Sbjct: 65 SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113
Score = 59.1 bits (143), Expect = 6e-10
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 6/105 (5%)
Query: 54 RQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG- 112
P P+ G +++ +V P+ I W +G+ L
Sbjct: 8 SALVPRGSHMYAPKLQGPVAVYTWEGN--QVNITCEVFA--YPSATISWFRDGQLLPSSN 63
Query: 113 -SRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
S K L++T + D G Y C A N G+ +
Sbjct: 64 YSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
Score = 56.8 bits (137), Expect = 3e-09
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 601 PEVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
+ WF +G+ LP + ++ L++ E + G Y C A N+ G + +
Sbjct: 48 ATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFI 107
Query: 659 LK 660
L
Sbjct: 108 LV 109
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 69.7 bits (171), Expect = 1e-14
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 9/118 (7%)
Query: 280 ATNKWGQAEISVNLECVDKSKGQPPKFT--SHIKSLEGLKDGDSAHFECTLTPVNDPELK 337
++ G V + + +PPK H++ K G+ + P +
Sbjct: 2 SSGSSGTLAQPVTI----REIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQG--KPRPQ 55
Query: 338 VEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
V W G P+ +RV + + V + DSGEY + +D I+
Sbjct: 56 VVWTKGGAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
Score = 62.8 bits (153), Expect = 4e-12
Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 8/112 (7%)
Query: 479 PSQGQQPVAQAAPVAEAPKFIT--QISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYN 535
QPV +AE PK + K G+ + P P V W
Sbjct: 6 SGTLAQPV-TIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVV---PFQGKPRPQVVWTKG 61
Query: 536 GKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
G L + DF + + +SG YE + D ++
Sbjct: 62 GAPLDTSRVHVRTSDFD-TVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
Score = 60.5 bits (147), Expect = 2e-11
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 9/105 (8%)
Query: 198 EDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASH-RIR 253
E PP+ GE + +P G V + G P++ S +R
Sbjct: 17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLV---VPFQGKPRPQVVWTKGGAPLDTSRVHVR 73
Query: 254 TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
T V + D+G Y + + ++ + V+K
Sbjct: 74 TSD--FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 58.6 bits (142), Expect = 1e-10
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 9/106 (8%)
Query: 55 QPSGPEETFAKPVFIVPLKPE----FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE 110
QP E P +P K+GE L+L + K P ++ W G PL+
Sbjct: 11 QPVTIREIAEPPKIRLPRHLRQTYIRKVGE--QLNLVVPFQGK--PRPQVVWTKGGAPLD 66
Query: 111 LGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
SR + + D G Y + + I
Sbjct: 67 -TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111
Score = 58.6 bits (142), Expect = 1e-10
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 687 EDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASH-RIR 742
E PP+ GE + +P G V + G P++ S +R
Sbjct: 17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLV---VPFQGKPRPQVVWTKGGAPLDTSRVHVR 73
Query: 743 TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
T V + D+G Y + + ++ +
Sbjct: 74 TSD--FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111
Score = 50.9 bits (122), Expect = 5e-08
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P+V W G L + DF + + +SG YE + D ++
Sbjct: 54 PQVVWTKGGAPLDTSRVHVRTSDFD-TVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 68.2 bits (167), Expect = 3e-14
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 302 QPPKFTSHIK---SLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVS 357
+ P +T+ K L + ++ F C P +P + W NGK ++R+
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRC---PAGGNPMPTMRWLKNGKEFKQEHRIGGYK 59
Query: 358 DFGFV-VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + V D G Y C N+YG +
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 62.1 bits (151), Expect = 5e-12
Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 8/100 (8%)
Query: 493 AEAPKFITQISDVTQLK---EGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTF 548
AP + +L + F P +P + W NGK+ HR +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRC---PAGGNPMPTMRWLKNGKEFKQEHRIGGY 58
Query: 549 HDF-GIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L + + G Y C N+YGS L
Sbjct: 59 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 60.9 bits (148), Expect = 1e-11
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 199 DGRPPQFTSEFQ---HLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIR 253
+ R P +T+ + L + F A G+ T+ +L NGK + HRI
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG----GNPMPTMRWLKNGKEFKQEHRIG 56
Query: 254 TVHAF-GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
L + D G YTC N++G + +L+
Sbjct: 57 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 60.9 bits (148), Expect = 1e-11
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 688 DGRPPQFTSEFQ---HLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIR 742
+ R P +T+ + L + F A G+ T+ +L NGK + HRI
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG----GNPMPTMRWLKNGKEFKQEHRIG 56
Query: 743 TVHAF-GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L + D G YTC N++G + +L+
Sbjct: 57 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 57.1 bits (138), Expect = 3e-10
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 64 AKPVFIVPLKPEFKL---GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTAD 120
P + K E +L A + +P + W+ NGK + R
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKV 60
Query: 121 FGFV-TLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
+L + V D+G YTC N G +
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 96
Score = 55.1 bits (133), Expect = 1e-09
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDF-GIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P + W NGK+ HR + L + + G Y C N+YGS L
Sbjct: 38 PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97
Query: 660 K 660
Sbjct: 98 D 98
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 70.2 bits (172), Expect = 4e-14
Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 28/155 (18%)
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
++ ++++ +NG I + D+G YTC+ + +
Sbjct: 33 ESDSIQWFHNGNLIPTHTQP----------SYRFKANNNDSGEYTCQTGQTSLSDPVHLT 82
Query: 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNR 352
+ LE ++G++ C + + P +KV +F NGK +
Sbjct: 83 V--------LFEWLVLQTPHLE-FQEGETIMLRCH-SWKDKPLVKVTFFQNGKSQKFSHL 132
Query: 353 VKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387
S I SG+Y C Y
Sbjct: 133 DPTFS--------IPQANHSHSGDYHCTGNIGYTL 159
Score = 67.9 bits (166), Expect = 3e-13
Identities = 33/181 (18%), Positives = 50/181 (27%), Gaps = 46/181 (25%)
Query: 495 APKF-ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
PK + + + S + + D ++WF+NG +P +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESD-SIQWFHNGNLIPTHTQP-------- 52
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTK----------------------ASLKCVSK 591
+SG Y C+ SD L+C S
Sbjct: 53 --SYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSW 110
Query: 592 TNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
+ L +V +F NGK H TF I +SG Y C Y
Sbjct: 111 KD----KPLVKVTFFQNGKSQKFSHLDPTFS-----IPQAN---HSHSGDYHCTGNIGYT 158
Query: 652 S 652
Sbjct: 159 L 159
Score = 54.8 bits (132), Expect = 9e-09
Identities = 32/198 (16%), Positives = 50/198 (25%), Gaps = 57/198 (28%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
VT L C + + ++WF+NG +P +
Sbjct: 19 EDSVT---LTCQGARS----PESDSIQWFHNGNLIPTHTQP----------SYRFKANNN 61
Query: 638 NSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE 697
+SG Y C+ SD +L + + + + P
Sbjct: 62 DSGEYTCQTGQTSLSD----------PVHLTVLFE-WLVLQTPHLE-------------- 96
Query: 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT 757
EGE + V F NGK + SH T I
Sbjct: 97 ------FQEGETIMLRCH-SWKDKPLVKVTFFQNGKSQKFSHLDPT--------FSIPQA 141
Query: 758 KIEDTGVYTCRATNKWGQ 775
+G Y C +
Sbjct: 142 NHSHSGDYHCTGNIGYTL 159
Score = 46.7 bits (111), Expect = 4e-06
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 303 PPKFTSHIKSLEG-LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
PPK ++ + DS C + + ++WFHNG I +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESD-SIQWFHNGNLIPTHTQP-------- 52
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGED 388
++DSGEY C+ D
Sbjct: 53 --SYRFKANNNDSGEYTCQTGQTSLSD 77
Score = 45.2 bits (107), Expect = 1e-05
Identities = 37/224 (16%), Positives = 60/224 (26%), Gaps = 66/224 (29%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
A P ++ L+P + + + L Q + + I+W NG + ++
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESD-SIQWFHNGNLIPTHTQ-------- 51
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
+ + D G YTC+ T S ++ +
Sbjct: 52 --PSYRFKANNNDSGEYTCQTGQ----TSLSDPVH----------------------LTV 83
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
L E L Q +F EGE + V F N
Sbjct: 84 LFEWLVLQT---------PHLEFQ----------EGETIMLRCH-SWKDKPLVKVTFFQN 123
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 286
GK + SH T I +G Y C +
Sbjct: 124 GKSQKFSHLDPT--------FSIPQANHSHSGDYHCTGNIGYTL 159
Score = 43.7 bits (103), Expect = 5e-05
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 12/92 (13%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
+ + + EF+ GE + L K+ P +K+ + NGK + T
Sbjct: 86 EWLVLQTPHLEFQEGE--TIMLRCHS-WKDKPLVKVTFFQNGKSQKFSHLDPT------- 135
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ + G Y C F+S +
Sbjct: 136 -FSIPQANHSHSGDYHCTGNIGYT-LFSSKPV 165
Score = 33.3 bits (76), Expect = 0.14
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 722 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
++ ++++ +NG I + D+G YTC+ + +
Sbjct: 33 ESDSIQWFHNGNLIPTHTQP----------SYRFKANNNDSGEYTCQTGQTSLSDPVHLT 82
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 67.7 bits (166), Expect = 4e-14
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI----FHKNRVKMVSD 358
P + ++ + + GD V++ +V W NG + K R + D
Sbjct: 8 PVLIVTPLEDQQ-VFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARYRFKKD 63
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
++ + V D G Y A +
Sbjct: 64 GKRHILIFSDVVQEDRGRYQVIT----NGGQCEAEL 95
Score = 63.9 bits (156), Expect = 9e-13
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 12/102 (11%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP----HGHR 544
++ + +T + D + G V++ V W NG +L R
Sbjct: 2 SSGSSGPVLIVTPLEDQQ-VFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKAR 57
Query: 545 YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
YR D IL +E+ G Y+ +A L
Sbjct: 58 YRFKKDGKRHILIFSDVVQEDRGRYQVITNG----GQCEAEL 95
Score = 59.3 bits (144), Expect = 4e-11
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 8/99 (8%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS----HRI 252
S P + + + G+ V ++ V ++ NG + R
Sbjct: 3 SGSSGPVLIVTPLEDQQ-VFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARY 58
Query: 253 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
R +L ED G Y +AE+ V
Sbjct: 59 RFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAELIV 97
Score = 59.3 bits (144), Expect = 4e-11
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 8/99 (8%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS----HRI 741
S P + + + G+ V ++ V ++ NG + R
Sbjct: 3 SGSSGPVLIVTPLEDQQ-VFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARY 58
Query: 742 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
R +L ED G Y +AE+ V
Sbjct: 59 RFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAELIV 97
Score = 51.2 bits (123), Expect = 3e-08
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE----LGS 113
G + + + PL+ + + + +V ++ ++ W+ NG L +
Sbjct: 1 GSSGSSGPVLIVTPLEDQQVF-VGDRVEMAVEV---SEEGAQVMWMKNGVELTREDSFKA 56
Query: 114 RFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145
R++ D L ++V D+G Y
Sbjct: 57 RYRFKKDGKRHILIFSDVVQEDRGRYQVITNG 88
Score = 45.0 bits (107), Expect = 4e-06
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 601 PEVEWFYNGKKLP----HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+V W NG +L RYR D IL +E+ G Y+ +
Sbjct: 37 AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG----GQCE 92
Query: 657 ASL 659
A L
Sbjct: 93 AEL 95
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 69.5 bits (170), Expect = 7e-14
Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 32/157 (20%)
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+ + ++ +NG E ++ L I+ K ED+G Y C+ + +
Sbjct: 33 EVSSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQHQQVNESEPVYLE 82
Query: 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI--FHK 350
+ D Q + +G C N KV ++ +G+ + +++
Sbjct: 83 VF-SDWLLLQASAEV--------VMEGQPLFLRC-HGWRNWDVYKVIYYKDGEALKYWYE 132
Query: 351 NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387
N + I DSG Y C +
Sbjct: 133 NHN----------ISITNATVEDSGTYYCTGKVWQLD 159
Score = 66.5 bits (162), Expect = 8e-13
Identities = 27/183 (14%), Positives = 53/183 (28%), Gaps = 46/183 (25%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
V + PK ++ +G++ + +WF+NG +
Sbjct: 1 VPQKPKVSLNPPW-NRIFKGENVTLTCNGNNFFEVS-STKWFHNGSLSEETNS------- 51
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTK----------------------ASLKCV 589
L+I+ E+SG Y+C+ S+ L+C
Sbjct: 52 ---SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH 108
Query: 590 SKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
N + +V ++ +G+ L + + E+SG Y C
Sbjct: 109 GWRN----WDVYKVIYYKDGEALKYWYENHNISITNAT--------VEDSGTYYCTGKVW 156
Query: 650 YGS 652
Sbjct: 157 QLD 159
Score = 55.3 bits (133), Expect = 6e-09
Identities = 32/209 (15%), Positives = 57/209 (27%), Gaps = 62/209 (29%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
G +VT L C ++ +WF+NG + L+I+ E
Sbjct: 19 GENVT---LTCNGNNF----FEVSSTKWFHNGSLSEETNS----------SLNIVNAKFE 61
Query: 638 NSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE 697
+SG Y+C+ S+ + L + A V
Sbjct: 62 DSGEYKCQHQQVNESEPVY-----------LEVFSDWLLLQASAEVVM------------ 98
Query: 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT 757
EG+ V + +G+ ++ + + I
Sbjct: 99 --------EGQPLFLR-CHGWRNWDVYKVIYYKDGEALKYWYENHN--------ISITNA 141
Query: 758 KIEDTGVYTCRATNKWGQ-----AEISVN 781
+ED+G Y C I+V
Sbjct: 142 TVEDSGTYYCTGKVWQLDYESEPLNITVI 170
Score = 44.9 bits (106), Expect = 2e-05
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G++ C + +WFHNG N ++I + DSGEY
Sbjct: 19 GENVTLTCNGNNFFEVS-STKWFHNGSLSEETNSS----------LNIVNAKFEDSGEYK 67
Query: 379 CRAWNKYGED 388
C+ +
Sbjct: 68 CQHQQVNESE 77
Score = 42.2 bits (99), Expect = 2e-04
Identities = 31/234 (13%), Positives = 57/234 (24%), Gaps = 73/234 (31%)
Query: 65 KPVFIV-PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
KP + P GE + L +W NG E +
Sbjct: 4 KPKVSLNPPWNRIFKGE--NVTLTCNG-NNFFEVSSTKWFHNGSLSEETNS--------- 51
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+L++ D G Y C+ + S +Y ++
Sbjct: 52 -SLNIVNAKFEDSGEYKCQHQQVNE----SEPVY----------------------LEVF 84
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
+ L Q + + EG+ V + +G
Sbjct: 85 SDWLLLQASAEV-------------------VMEGQPLFLR-CHGWRNWDVYKVIYYKDG 124
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-----AEISVN 292
+ ++ + + I +ED+G Y C I+V
Sbjct: 125 EALKYWYENHN--------ISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170
Score = 36.8 bits (85), Expect = 0.011
Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 15/114 (13%)
Query: 49 AGKY--QRQPSGPEETFAKPVFIVPLK---PEFKLGEAQPLHLEAQVEPKNDPNLKIEWI 103
+G+Y Q Q E VF L + E QPL L +N K+ +
Sbjct: 63 SGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHG-WRNWDVYKVIYY 121
Query: 104 FNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+G+ L+ + +T D G Y C + S +
Sbjct: 122 KDGEALKYWYENHN--------ISITNATVEDSGTYYCTGKVWQL-DYESEPLN 166
Score = 35.3 bits (81), Expect = 0.034
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 722 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
+ + ++ +NG E ++ L I+ K ED+G Y C+ + +
Sbjct: 33 EVSSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQHQQVNESEPVYLE 82
Query: 782 L 782
+
Sbjct: 83 V 83
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 74.1 bits (182), Expect = 8e-14
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 294 ECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV 353
+ P+F E + +G SA+F C + + P V W + + + +
Sbjct: 473 DAFWDRSEAQPRFIVKPYGTE-VGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKY 529
Query: 354 KMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + I V+ D GEY RA N YG +
Sbjct: 530 MKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 71.0 bits (174), Expect = 6e-13
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Query: 479 PSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKK 538
P + A P+FI + T++ EGQSA+F R+ + P V W + ++
Sbjct: 466 PQEYSIRDAFWDRSEAQPRFIVKPYG-TEVGEGQSANFYCRVIASSPPV--VTWHKDDRE 522
Query: 539 LPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L +Y ++ L I ++ G Y RA N YG+ L
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 61.4 bits (149), Expect = 7e-10
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P V W + ++L +Y ++ L I ++ G Y RA N YG+ L
Sbjct: 512 PVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 58.7 bits (142), Expect = 5e-09
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
Query: 38 LEKVQEVEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPN 97
+ + +Y + + + + A+P FIV ++GE Q + +V + P
Sbjct: 455 ISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPY-GTEVGEGQSANFYCRVIASSPP- 512
Query: 98 LKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ W + + L+ ++ + L + V D+G YT RA N G +
Sbjct: 513 -VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
Score = 56.8 bits (137), Expect = 2e-08
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 195 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 254
P+F + + EG+ A+F +I V + + + ++ S +
Sbjct: 475 FWDRSEAQPRFIVKPYGTE-VGEGQSANFYCRVI--ASSPPVVTWHKDDRELKQSVKYMK 531
Query: 255 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+ L I K +D G YT RA N +G E V L
Sbjct: 532 RYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
Score = 56.8 bits (137), Expect = 2e-08
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 684 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 743
P+F + + EG+ A+F +I V + + + ++ S +
Sbjct: 475 FWDRSEAQPRFIVKPYGTE-VGEGQSANFYCRVI--ASSPPVVTWHKDDRELKQSVKYMK 531
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ L I K +D G YT RA N +G E V L
Sbjct: 532 RYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 72.2 bits (176), Expect = 9e-14
Identities = 33/349 (9%), Positives = 82/349 (23%), Gaps = 81/349 (23%)
Query: 66 PVFIV-PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
+ K F G+ L + NL W + +P E +
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA---------- 52
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLE 184
TL + + + G Y + T + ++ + LI P+
Sbjct: 53 TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSS------ 106
Query: 185 ESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK 244
+ + + + P + + +
Sbjct: 107 ---------------QTDVELHATVKFSGGKT------------PADNYELHYSWSKGED 139
Query: 245 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
I+ + + I + GVYT + + + S + + +
Sbjct: 140 VIDTTQD-----------ITIQEFTADKNGVYTVKVWGESEDSAASASTKIM-----LAT 183
Query: 305 KFTSHIKSLEG-LKDGDSAHFECTL--------TPVNDPELKVEWFHN----------GK 345
+ G+ + + + + +K W+ G
Sbjct: 184 MNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGS 243
Query: 346 PIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ ++ G + D+ ++ C A + +
Sbjct: 244 EVGEALEGFSITPDGHLF--KESATYDDTAKFWCVAKLYQQIEDETVEV 290
Score = 69.9 bits (170), Expect = 4e-13
Identities = 20/201 (9%), Positives = 52/201 (25%), Gaps = 33/201 (16%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASL--IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
+ + G+ A++ +T + + +P E +
Sbjct: 2 AFTVSIQSNK-RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT------- 53
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
L + E+ G Y + + + ++ + + + + +
Sbjct: 54 ---LTVADATSENAGSYKVTVQDTDTMTSVESEVFLME--EAELIVNITEPQHFY-VSSQ 107
Query: 320 DSAHFECTLT------PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHD 373
T+ P ++ EL W I + I +
Sbjct: 108 TDVELHATVKFSGGKTPADNYELHYSWSKGEDVI-----------DTTQDITIQEFTADK 156
Query: 374 SGEYVCRAWNKYGEDFTRATI 394
+G Y + W + + A+
Sbjct: 157 NGVYTVKVWGESEDSAASAST 177
Score = 64.5 bits (156), Expect = 2e-11
Identities = 37/320 (11%), Positives = 83/320 (25%), Gaps = 63/320 (19%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLT--PVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
A Q + G A + +L W + + +
Sbjct: 2 AFTVSIQSNKRC-FLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA-------- 52
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKL 612
L + EN+G Y+ + ++ + + + LI+ P+ + + +
Sbjct: 53 --TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDV 110
Query: 613 ----------------PHGHRYRTFHDFGIV----ILDILYCYEENSGVYECRATNKYGS 652
+ Y ++ + I + +GVY + +
Sbjct: 111 ELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESED 170
Query: 653 DVTKASLKCVSKTNLILESQLPE----------LRRQPAGVPDSEDGRPPQFTSEFQHLS 702
AS K + T + + + L + + P T ++
Sbjct: 171 SAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYL 230
Query: 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDT 762
EG+++ VG+ +G L +DT
Sbjct: 231 Q-REGQLSPTLIG-SEVGEALEGFSITPDGH------------------LFKESATYDDT 270
Query: 763 GVYTCRATNKWGQAEISVNL 782
+ C A + +V +
Sbjct: 271 AKFWCVAKLYQQIEDETVEV 290
Score = 51.0 bits (121), Expect = 7e-07
Identities = 18/163 (11%), Positives = 43/163 (26%), Gaps = 44/163 (26%)
Query: 636 EENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFT 695
EN+G Y+ + ++ L+ E++L +P
Sbjct: 61 SENAGSYKVTVQDTDTMTSVESE------VFLMEEAELIVNITEPQHF------------ 102
Query: 696 SEFQHLSNLSEGEIAHFEASLI------PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
+S A++ P + + + I+ +
Sbjct: 103 -------YVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQD--------- 146
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQT 792
+ I + GVYT + + + S + + +
Sbjct: 147 --ITIQEFTADKNGVYTVKVWGESEDSAASAST--KIMLATMN 185
Score = 39.4 bits (91), Expect = 0.004
Identities = 9/101 (8%), Positives = 26/101 (25%), Gaps = 13/101 (12%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASL--IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
+ + G+ A++ +T + + +P E +
Sbjct: 2 AFTVSIQSNK-RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT------- 53
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
L + E+ G Y + + + + +
Sbjct: 54 ---LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAE 91
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 69.4 bits (169), Expect = 2e-13
Identities = 24/162 (14%), Positives = 40/162 (24%), Gaps = 13/162 (8%)
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
+ + +RI G I I G+ C A + + + V +
Sbjct: 48 EKRFVPDGNRISWDSKKGFT---IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYR- 103
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
L G+ CT + + W + HK V
Sbjct: 104 -IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 162
Query: 362 V--------VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ I V D G Y C A + ++
Sbjct: 163 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204
Score = 61.3 bits (148), Expect = 8e-11
Identities = 26/207 (12%), Positives = 54/207 (26%), Gaps = 44/207 (21%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW---FYNGKKLPHGHRYRT 547
P + + +T+ + ++ + +L V + + +P G+R
Sbjct: 5 PFIASVSDQHGVVYITE-NKNKTVVIPCL---GSISNLNVSLCARYPEKRFVPDGNRISW 60
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT--------------- 592
G I + +G+ C A S + + V
Sbjct: 61 DSKKGFTIPSYMI---SYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIEL 117
Query: 593 ----NLILE-------SQLPEVEWFYNGKKLPHGHRYRTFHDFGIV--------ILDILY 633
L+L + + W Y K H L I
Sbjct: 118 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 177
Query: 634 CYEENSGVYECRATNKYGSDVTKASLK 660
+ G+Y C A++ + ++
Sbjct: 178 VTRSDQGLYTCAASSGLMTKKNSTFVR 204
Score = 56.3 bits (135), Expect = 4e-09
Identities = 31/251 (12%), Positives = 60/251 (23%), Gaps = 55/251 (21%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF---NGKPLELGSRF 115
F V + + + + + NL + + + G+R
Sbjct: 2 YRSPFIASVSDQHGVVYITENKNKTVVIPCLG---SISNLNVSLCARYPEKRFVPDGNRI 58
Query: 116 KTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEE 175
+ GF + G+ C A E++ S ++ +
Sbjct: 59 SWDSKKGFT---IPSYMISYAGMVFCEAKI-NDESYQSIMY-------IVVVVGYR---- 103
Query: 176 GLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQ 233
H LS GE A
Sbjct: 104 --------------------------IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 234 TMTVEF----LYNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGVYTCRATNKWGQA 287
E+ + K + + ++ L I G D G+YTC A++
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 197
Query: 288 EISVNLECVDK 298
+ S + +
Sbjct: 198 KNSTFVRVHED 208
Score = 54.0 bits (129), Expect = 3e-08
Identities = 29/186 (15%), Positives = 49/186 (26%), Gaps = 35/186 (18%)
Query: 605 WFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 664
+ + +P G+R G I + +G+ C A S + + V
Sbjct: 45 RYPEKRFVPDGNRISWDSKKGFTIPSYMI---SYAGMVFCEAKINDESYQSIMYIVVVVG 101
Query: 665 TNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQ 722
R H LS GE A
Sbjct: 102 Y------------------------RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 723 TMTVEF----LYNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGVYTCRATNKWGQA 776
E+ + K + + ++ L I G D G+YTC A++
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 197
Query: 777 EISVNL 782
+ S +
Sbjct: 198 KNSTFV 203
Score = 44.0 bits (103), Expect = 6e-05
Identities = 16/109 (14%), Positives = 26/109 (23%), Gaps = 9/109 (8%)
Query: 317 KDGDSAHFECTLTPVNDPELKVEWFHN-GKPIFHKNRVKMVSD--FGFVVMDIAYVQSHD 373
+ C + L V + F + ++ D GF I
Sbjct: 22 NKNKTVVIPCLGS---ISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT---IPSYMISY 75
Query: 374 SGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
+G C A + I +Y L P + E
Sbjct: 76 AGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLV 124
Score = 29.4 bits (65), Expect = 3.9
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 3/62 (4%)
Query: 731 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790
+ + +RI G I I G+ C A + + + VV
Sbjct: 48 EKRFVPDGNRISWDSKKGFT---IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRI 104
Query: 791 QT 792
Sbjct: 105 YD 106
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 66.3 bits (162), Expect = 2e-13
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 15/101 (14%)
Query: 299 SKGQPPKFTSHIKSLEGLKD-----GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV 353
S P I S + + C ++ + W+ +G+ + +
Sbjct: 3 SGSSGPVH---ILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELL 56
Query: 354 KMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ D + + + DSGE+ CR +
Sbjct: 57 VVKMDGRKHRLILPEAKVQDSGEFECRT----EGVSAFFGV 93
Score = 64.3 bits (157), Expect = 9e-13
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 11/97 (11%)
Query: 493 AEAPKFIT---QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH 549
+ P I +T + ++ D W+ +G+K+
Sbjct: 5 SSGPVHILSPQDKVSLT-FTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVVKM 60
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
D L + ++SG +ECR +
Sbjct: 61 DGRKHRLILPEAKVQDSGEFECRT----EGVSAFFGV 93
Score = 60.5 bits (147), Expect = 2e-11
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 5/93 (5%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
P Q +L+ E + + +G+ +E S +
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVVKMDGR 63
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
L + K++D+G + CR ++V
Sbjct: 64 KHRLILPEAKVQDSGEFECRTEGVSAFFGVTVQ 96
Score = 60.5 bits (147), Expect = 2e-11
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 5/93 (5%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
P Q +L+ E + + +G+ +E S +
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVVKMDGR 63
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
L + K++D+G + CR ++V
Sbjct: 64 KHRLILPEAKVQDSGEFECRTEGVSAFFGVTVQ 96
Score = 54.7 bits (132), Expect = 2e-09
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 64 AKPVFIVPLKPEF--KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
+ PV I+ + + ++ + L ++ + + W +G+ +E D
Sbjct: 6 SGPVHILSPQDKVSLTFTTSERVVLTCEL---SRVDFPATWYKDGQKVEESELLVVKMDG 62
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWN 145
L L E +D G + CR
Sbjct: 63 RKHRLILPEAKVQDSGEFECRTEG 86
Score = 50.9 bits (122), Expect = 4e-08
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 15/83 (18%)
Query: 578 GSDVTKASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYE 636
V L C +S+ + W+ +G+K+ D L +
Sbjct: 25 SERVV---LTCELSRVD-------FPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74
Query: 637 ENSGVYECRATNKYGSDVTKASL 659
++SG +ECR +
Sbjct: 75 QDSGEFECRT----EGVSAFFGV 93
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 66.3 bits (162), Expect = 2e-13
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 299 SKGQPPKFTSHIKSLEGLK--DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356
S + + + + C L P +V W +G+ + + +
Sbjct: 6 SGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC---RPWAEVRWTKDGEEVVESPALLLQ 62
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + + VQ DSGEY+C ++ T+
Sbjct: 63 KEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTV 96
Score = 64.4 bits (157), Expect = 1e-12
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 9/113 (7%)
Query: 489 AAPVAEAPKFITQISDVTQLK--EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR 546
+ + +I S + + + P V W +G+++
Sbjct: 4 GSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCE---LCRPWAEVRWTKDGEEVVESPALL 60
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ 599
+ + L + E+SG Y C + ++ I+ S
Sbjct: 61 LQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPPVRIIYSG 109
Score = 61.3 bits (149), Expect = 1e-11
Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 13/108 (12%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
+ ++ E + V + +G+ + S +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCE---LCRPWAEVRWTKDGEEVVESPALLLQKEDT 66
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFT 307
+ L + ++ED+G Y C ++ ++V P +
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEIDDESASFTVTV--------TEPPVRII 106
Score = 60.9 bits (148), Expect = 2e-11
Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
+ ++ E + V + +G+ + S +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCE---LCRPWAEVRWTKDGEEVVESPALLLQKEDT 66
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+ L + ++ED+G Y C ++ ++V
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEIDDESASFTVTV 98
Score = 54.4 bits (131), Expect = 3e-09
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 9/95 (9%)
Query: 64 AKPVFIVPLKPEFKL--GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
+IV + + + + L ++ P ++ W +G+ + +
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTCEL---CRPWAEVRWTKDGEEVVESPALLLQKED 65
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L L V D G Y C + S T+
Sbjct: 66 TVRRLVLPAVQLEDSGEYLCE----IDDESASFTV 96
Score = 50.1 bits (120), Expect = 9e-08
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
+ L C L EV W +G+++ + + L + E+SG Y
Sbjct: 30 RVVLTCE------LCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEY 83
Query: 643 ECRATNKYGSDVTKASLKCVSKTNLILESQ 672
C + ++ I+ S
Sbjct: 84 LCEI----DDESASFTVTVTEPPVRIIYSG 109
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 65.2 bits (159), Expect = 4e-13
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 11/98 (11%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM-----VS 357
P I LE T+ +P+ ++WF+NG + +
Sbjct: 4 APT----ITFLESPTSDHHWCIPFTVKG--NPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + ++G+Y A N+YG+D + +
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
Score = 58.6 bits (142), Expect = 8e-11
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 236 TVEFLYNGKPIEASHRIRT-----VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
+++ YNG + S I T H L++ + G YT A N++G+ E
Sbjct: 32 ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91
Query: 291 VNLECVDK 298
++ +
Sbjct: 92 ISAHFMGW 99
Score = 58.2 bits (141), Expect = 1e-10
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 601 PEVEWFYNGKKLPHGHRYRTF-----HDFGIVILDILYCYEENSGVYECRATNKYGSDVT 655
P ++WFYNG L T H L + N+G Y A N+YG D
Sbjct: 31 PALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEK 90
Query: 656 KASLK 660
+ S
Sbjct: 91 QISAH 95
Score = 57.4 bits (139), Expect = 2e-10
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 725 TVEFLYNGKPIEASHRIRT-----VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
+++ YNG + S I T H L++ + G YT A N++G+ E
Sbjct: 32 ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91
Query: 780 VNLE 783
++
Sbjct: 92 ISAH 95
Score = 57.1 bits (138), Expect = 3e-10
Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 13/102 (12%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTF-- 548
V AP IT + T V +P ++WFYNG L T
Sbjct: 1 VHFAPT-ITFLESPT---SDHHWCIPFT---VKGNPKPALQWFYNGAILNESKYICTKIH 53
Query: 549 ---HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
H L + N+G Y A N+YG D + S
Sbjct: 54 VTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
Score = 52.8 bits (127), Expect = 8e-09
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTADFG-----FVTLDLTEVYDRDQGIYTCRAWNLAGE 149
+P ++W +NG L T L L + G YT A N G+
Sbjct: 28 NPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK 87
Query: 150 TFTSTTI 156
+
Sbjct: 88 DEKQISA 94
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 67.8 bits (165), Expect = 5e-13
Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 231 GDQTMTVEFLYNGKPIE----ASHRIRTVH-----AFGMVVLEILGTKIEDTGVYTCRAT 281
+ +E + + R G + I ++ D+G Y C
Sbjct: 28 RRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVI 87
Query: 282 NKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWF 341
+ + K + + LE G C P +V W
Sbjct: 88 CGAAWDYKYLTV------KVKASYMRIDTRILEVPGTG-EVQLTCQAR--GYPLAEVSWQ 138
Query: 342 HNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ P + + + V + ++ S + C WN + ++ T A I
Sbjct: 139 NVSVPANTSHIR--TPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAII 189
Score = 48.9 bits (116), Expect = 1e-06
Identities = 25/181 (13%), Positives = 42/181 (23%), Gaps = 38/181 (20%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGH------RYRTFHDF---GIVILDILY 560
G S E +E + R + G + I
Sbjct: 16 VGSSVSLECDFDR--RECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS 73
Query: 561 CYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ-------------------LP 601
+SG Y C D ++K + I L
Sbjct: 74 VQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLA 133
Query: 602 EVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
EV W H + ++ L + S + C N + ++T A
Sbjct: 134 EVSWQNVSVPANTSHIRTPEGLYQVTSVLRLK-----PQPSRNFSCMFWNAHMKELTSAI 188
Query: 659 L 659
+
Sbjct: 189 I 189
Score = 48.5 bits (115), Expect = 2e-06
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 11/86 (12%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIF------HKNRVKMVSDF---GFVVMDIAYV 369
G S EC E +E R ++ + G + I V
Sbjct: 17 GSSVSLECDFDRRECTE--LEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSV 74
Query: 370 QSHDSGEYVCRAWNKYGEDFTRATIK 395
Q DSG+Y C D+ T+K
Sbjct: 75 QVRDSGQYRCLVICGAAWDYKYLTVK 100
Score = 46.2 bits (109), Expect = 9e-06
Identities = 30/216 (13%), Positives = 54/216 (25%), Gaps = 50/216 (23%)
Query: 577 YGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGH------RYRTFHDF---GIV 627
GS V+ L+C + E+E + R + G
Sbjct: 16 VGSSVS---LECDFDRR-----ECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKA 67
Query: 628 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSE 687
+ I +SG Y C D L ++ + +R +
Sbjct: 68 LFHIPSVQVRDSGQYRCLVICGAAWD----------YKYLTVKVKASYMRIDTRILEVPG 117
Query: 688 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 747
G +A P V + P SH +
Sbjct: 118 TG-----------------EVQLTCQARGYP----LAEVSWQNVSVPANTSHIRTPEGLY 156
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
V +L K + + ++C N + S ++
Sbjct: 157 --QVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIID 190
Score = 37.3 bits (86), Expect = 0.009
Identities = 28/210 (13%), Positives = 47/210 (22%), Gaps = 56/210 (26%)
Query: 94 NDPNLKIEWIFNGKPLELG---------SRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144
++E I + + G + V RD G Y C
Sbjct: 28 RRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVI 87
Query: 145 NLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQ 204
A + T+ I+ G E L Q G P +
Sbjct: 88 CGAAWDYKYLTVKVKASYMRIDTRILEVPGTG-------EVQLTCQARGYP------LAE 134
Query: 205 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLE 264
V + P SH + V
Sbjct: 135 --------------------------------VSWQNVSVPANTSHIRTPEGLY--QVTS 160
Query: 265 ILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+L K + + ++C N + S ++
Sbjct: 161 VLRLKPQPSRNFSCMFWNAHMKELTSAIID 190
Score = 35.0 bits (80), Expect = 0.057
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 96 PNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
P ++ W P + T + + + + + ++C WN + TS
Sbjct: 131 PLAEVSWQNVSVPAN--TSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAI 188
Query: 156 IY-CSTKESLIERT 168
I S E + RT
Sbjct: 189 IDPLSRMEPKVPRT 202
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 65.2 bits (159), Expect = 5e-13
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 10/97 (10%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PP+ S + L E + +P + W HNG+P+ + +
Sbjct: 8 PPRVVSLEEPELRL----EHCIEFVVR--GNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 61
Query: 363 VMD----IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + +++G Y A N G
Sbjct: 62 ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
Score = 61.0 bits (148), Expect = 2e-11
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
PP+ S L E + G+ T+ +L+NG+P+ S I +
Sbjct: 8 PPRVVS----LEEPELRLEHCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 61
Query: 262 V----LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
+ L + G YT A N G A ++N + +
Sbjct: 62 ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDE 108
Score = 60.6 bits (147), Expect = 3e-11
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 10/95 (10%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT----TADF 121
P + +PE +E V + +P + W+ NG+PL +
Sbjct: 9 PRVVSLEEPE----LRLEHCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + + G YT A N G +
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97
Score = 60.2 bits (146), Expect = 3e-11
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
PP+ S L E + G+ T+ +L+NG+P+ S I +
Sbjct: 8 PPRVVS----LEEPELRLEHCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 61
Query: 751 V----LEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ L + G YT A N G A ++N
Sbjct: 62 ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97
Score = 56.4 bits (136), Expect = 7e-10
Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHD 550
V P+ ++ E V +P + W +NG+ L +
Sbjct: 5 VYYPPRVVSLEEPE----LRLEHCIEFV---VRGNPPPTLHWLHNGQPLRESKIIHVEYY 57
Query: 551 FGIVI----LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
I L N+G Y A N G+ +
Sbjct: 58 QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
Score = 56.0 bits (135), Expect = 9e-10
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVI----LDILYCYEENSGVYECRATNKYGSDVTK 656
P + W +NG+ L + I L N+G Y A N G+
Sbjct: 35 PTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQT 94
Query: 657 ASLK 660
+
Sbjct: 95 INGH 98
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 69.4 bits (169), Expect = 6e-13
Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 16/173 (9%)
Query: 232 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVV-----LEILGTKIEDTGVYTCRA-TNKWG 285
+M V G S R+ V A L + G ++ED G YTC T G
Sbjct: 45 SGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQG 104
Query: 286 QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGK 345
+ + L + P+ T+ ++ ++ L C + P ++ W +
Sbjct: 105 SRSVDIWLRVLA-----KPQNTAEVQKVQ-LTGEPVPMARCV-STGGRPPAQITWHSDLG 157
Query: 346 PIFHKNRVKMVSDFGFVVMD---IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + ++V V + D C+ ++ E T+
Sbjct: 158 GMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN 210
Score = 69.0 bits (168), Expect = 1e-12
Identities = 41/339 (12%), Positives = 89/339 (26%), Gaps = 80/339 (23%)
Query: 82 QPLHLEAQVEPKNDPN---LKIEWIFNGKPLELG------------------SRFKTTAD 120
+ L ++ N ++ W +G+ + + A+
Sbjct: 16 DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAE 75
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKI 180
+L + + D+G YTC + +
Sbjct: 76 LRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDI------------------------- 110
Query: 181 QDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFL 240
LR V PQ T+E Q + L+ + + G + +
Sbjct: 111 -----WLR-----VLA-----KPQNTAEVQKVQ-LTGEPVPMAR-CVSTGGRPPAQITWH 153
Query: 241 YNGKPIEASHRIRTVHAFGMVV---LEILGTKIEDTGVYTCRATNKWGQAEI--SVNLEC 295
+ + + ++ + + V ++ + D TC+ ++ + +VNL
Sbjct: 154 SDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV 213
Query: 296 VDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM 355
PP+ + + A C +P W P+ +
Sbjct: 214 YY-----PPEVSISGYDNNWYLGQNEATLTCDARSNPEP-TGYNWSTTMGPL---PPFAV 264
Query: 356 VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ I V + +C N G T+
Sbjct: 265 AQGAQLL---IRPVDKPINTTLICNVTNALGARQAELTV 300
Score = 67.4 bits (164), Expect = 3e-12
Identities = 37/334 (11%), Positives = 74/334 (22%), Gaps = 83/334 (24%)
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPD---LVVEWFYNGK-------------KLPH 541
+ + V G S L + W +G+
Sbjct: 3 VVQAPTQVPGF-LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 542 GHRYR-----TFHDFGIVILDILYCYEENSGVYECRA-TNKYGSDVTKASLK-------- 587
R + L + E+ G Y C T GS L+
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNT 121
Query: 588 -CVSKTNLILESQL------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 634
V K L E ++ W + +P+ + F + + +
Sbjct: 122 AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWIL 181
Query: 635 Y---EENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRP 691
+ + C+ ++ ++ L P
Sbjct: 182 VPSSQVDGKNVTCKVEHESFEKPQLLTVN--------LTVYY-----------------P 216
Query: 692 PQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
P+ + + A +A P + + P+ +
Sbjct: 217 PEVSISGYDNNWYLGQNEATLTCDARSNP---EPTGYNWSTTMGPLPPFAVAQG------ 267
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L I C TN G + + ++
Sbjct: 268 AQLLIRPVDKPINTTLICNVTNALGARQAELTVQ 301
Score = 58.6 bits (141), Expect = 2e-09
Identities = 32/262 (12%), Positives = 56/262 (21%), Gaps = 67/262 (25%)
Query: 49 AGKYQ----RQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVE-------PKNDPN 97
G Y P G V KP+ E Q + L + P
Sbjct: 91 EGNYTCLFVTFPQGSRSVDIW--LRVLAKPQNTA-EVQKVQLTGEPVPMARCVSTGGRPP 147
Query: 98 LKIEWIFNGKPLELGSRFKTTADFGFV---TLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
+I W + + S+ L D TC+ + + E
Sbjct: 148 AQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLL 207
Query: 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214
T+ + PP+ + +
Sbjct: 208 TVNLTVYY---------------------------------------PPEVSISGYDNNW 228
Query: 215 LSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIED 272
A +A P + + P+ + L I
Sbjct: 229 YLGQNEATLTCDARSNP---EPTGYNWSTTMGPLPPFAVAQG------AQLLIRPVDKPI 279
Query: 273 TGVYTCRATNKWGQAEISVNLE 294
C TN G + + ++
Sbjct: 280 NTTLICNVTNALGARQAELTVQ 301
Score = 56.6 bits (136), Expect = 9e-09
Identities = 47/312 (15%), Positives = 90/312 (28%), Gaps = 70/312 (22%)
Query: 319 GDSAHFECTLTPVNDPE---LKVEWFHNGKP----IFHKNRVKMVSDFGFVVMD------ 365
GDS C L N ++ W +G+ +FH+ + S+ +
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 366 --------IAYVQSHDSGEYVCRAWNK-YGEDFTRATIKCFGKGGVYLDSLQPESLARIR 416
+ ++ D G Y C G ++ V +P++ A ++
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR------VLA---KPQNTAEVQ 125
Query: 417 ELENAQGQQP-----VAQAAPVAEAPKFIT------QISDVTQLKEGQSAHFEA----RL 461
+++ P P A+ IT + + +Q+ S L
Sbjct: 126 KVQLTGEPVPMARCVSTGGRPPAQ----ITWHSDLGGMPNTSQVPGFLSGTVTVTSLWIL 181
Query: 462 TPVTDPD---LVCELFSNFFPSQGQQPVAQAAP--VAEAPKFITQISDVTQLKEGQSAHF 516
P + D + C++ + ++P V P+ D A
Sbjct: 182 VPSSQVDGKNVTCKV-EH---ESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237
Query: 517 --EARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 574
+AR P W LP + L I + + C T
Sbjct: 238 TCDARSNP---EPTGYNWSTTMGPLPPFAVAQGA------QLLIRPVDKPINTTLICNVT 288
Query: 575 NKYGSDVTKASL 586
N G+ + ++
Sbjct: 289 NALGARQAELTV 300
Score = 53.6 bits (128), Expect = 1e-07
Identities = 22/202 (10%), Positives = 50/202 (24%), Gaps = 49/202 (24%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
V P+ ++ V L + P + W + +P+ + F
Sbjct: 114 VLAKPQNTAEVQKVQ-LTGEPVPMARCV-STGGRPPAQITWHSDLGGMPNTSQVPGFLSG 171
Query: 552 GIVILDILYCY---EENSGVYECRATNKYGSDVTKAS----------------------- 585
+ + + + + C+ ++ +
Sbjct: 172 TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLG 231
Query: 586 -----LKCVSKTNLILESQLP---EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
L C +++N P W LP + L I +
Sbjct: 232 QNEATLTCDARSN-------PEPTGYNWSTTMGPLPPFAVAQGA------QLLIRPVDKP 278
Query: 638 NSGVYECRATNKYGSDVTKASL 659
+ C TN G+ + ++
Sbjct: 279 INTTLICNVTNALGARQAELTV 300
Score = 48.9 bits (116), Expect = 3e-06
Identities = 31/236 (13%), Positives = 68/236 (28%), Gaps = 54/236 (22%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGK-------------KLPHGHRYR----- 619
G VT L C + + + + ++ W +G+ R
Sbjct: 15 GDSVT---LPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAAR 71
Query: 620 TFHDFGIVILDILYCYEENSGVYECRA-TNKYGSDVTKASLKCVSKTNLILESQLPELRR 678
+ L + E+ G Y C T GS L+
Sbjct: 72 LGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR------------------ 113
Query: 679 QPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS 738
V PQ T+E Q + L+ + + G + + + + +
Sbjct: 114 ----VLA-----KPQNTAEVQKVQ-LTGEPVPMAR-CVSTGGRPPAQITWHSDLGGMPNT 162
Query: 739 HRIRTVHAFGMVV---LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791
++ + + V ++ + D TC+ ++ + + + V+ P +
Sbjct: 163 SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPE 218
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 67.0 bits (163), Expect = 7e-13
Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 30/164 (18%)
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN-KWGQAEISVNLECVDKSK 300
G ++ E + G Y+C G A I ++
Sbjct: 37 GGVVLKEDALPGQK-------TEFKVDSDDQWGEYSCVFLPEPMGTANIQLH-------- 81
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLT--PVNDPELKVEWFHNGKPIFHKN------R 352
PP+ + KS E + +G++A C P P W+ R
Sbjct: 82 -GPPRVKAV-KSSEHINEGETAMLVCKSESVP---PVTDWAWYKITDSEDKALMNGSESR 136
Query: 353 VKMVSDFGFVVMDIAYVQ-SHDSGEYVCRAWNKYGEDFTRATIK 395
+ S G + I + D G+Y C + G D T++
Sbjct: 137 FFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
Score = 63.1 bits (153), Expect = 1e-11
Identities = 29/191 (15%), Positives = 46/191 (24%), Gaps = 45/191 (23%)
Query: 499 ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDI 558
T + D+ G L W G L +F +
Sbjct: 6 FTTVEDL-----GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD---- 56
Query: 559 LYCYEENSGVYECRATNKYGSDVT----------------------KASLKCVSKTNLIL 596
++ G Y C + A L C S++
Sbjct: 57 ---SDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESV--- 110
Query: 597 ESQLPEVEWFYNGKKLP------HGHRYRTFHDFGIVILDILYC-YEENSGVYECRATNK 649
+ + W+ R+ G L I E + G Y C T+
Sbjct: 111 -PPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS 169
Query: 650 YGSDVTKASLK 660
GSD +L+
Sbjct: 170 KGSDQAIITLR 180
Score = 57.3 bits (138), Expect = 1e-09
Identities = 35/269 (13%), Positives = 60/269 (22%), Gaps = 101/269 (37%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G C+L W G + + GEY
Sbjct: 13 GSKILLTCSLNDSATEVTGHRWLKGGVVLKE-------DALPGQKTEFKVDSDDQWGEYS 65
Query: 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPK 438
C +P+ A P
Sbjct: 66 CVFLP-----------------------------------------EPMGTANIQLHGPP 84
Query: 439 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKF 498
+ + + EG++A LVC+ +++ P
Sbjct: 85 RVKAVKSSEHINEGETA------------MLVCK--------------SESVP------- 111
Query: 499 ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDI 558
++D K S L ++ V +L I ++
Sbjct: 112 --PVTDWAWYKITDSEDKA--LMNGSESRFFVSSSQGRSEL--------------HIENL 153
Query: 559 LYCYEENSGVYECRATNKYGSDVTKASLK 587
E + G Y C T+ GSD +L+
Sbjct: 154 NM--EADPGQYRCNGTSSKGSDQAIITLR 180
Score = 57.0 bits (137), Expect = 2e-09
Identities = 28/219 (12%), Positives = 50/219 (22%), Gaps = 58/219 (26%)
Query: 82 QPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141
+ L + W+ G L+ + + D G Y+C
Sbjct: 14 SKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK-------TEFKVDSDDQWGEYSC 66
Query: 142 RAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGR 201
T
Sbjct: 67 VFLPEPMGTANIQLHG-------------------------------------------- 82
Query: 202 PPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQ---TMTVEFLYNGKPIEASHRIRTVH 256
PP+ + +++EGE A ++ +P + + R
Sbjct: 83 PPRVKAVKSSE-HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 141
Query: 257 AFGMVVLEILGTKIE-DTGVYTCRATNKWGQAEISVNLE 294
+ G L I +E D G Y C T+ G + + L
Sbjct: 142 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
Score = 53.5 bits (128), Expect = 3e-08
Identities = 32/217 (14%), Positives = 56/217 (25%), Gaps = 50/217 (23%)
Query: 573 ATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDIL 632
GS + L C + W G L +F +
Sbjct: 8 TVEDLGSKIL---LTCSLNDSATEV---TGHRWLKGGVVLKEDALPGQKTEFKVD----- 56
Query: 633 YCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPP 692
++ G Y C +P G + + PP
Sbjct: 57 --SDDQWGEYSCVFLP------------------------------EPMGTANIQLHGPP 84
Query: 693 QFTSEFQHLSNLSEGEIAHF--EASLIPVGDQ---TMTVEFLYNGKPIEASHRIRTVHAF 747
+ + +++EGE A ++ +P + + R +
Sbjct: 85 RVKAVKSSE-HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 748 GMVVLEILGTKIE-DTGVYTCRATNKWGQAEISVNLE 783
G L I +E D G Y C T+ G + + L
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
Score = 38.9 bits (90), Expect = 0.003
Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 9/102 (8%)
Query: 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE------LGSR 114
+ P E + E + L + E P W + SR
Sbjct: 79 QLHGPPRVKAVKSSE-HINEGETAMLVCKSE-SVPPVTDWAWYKITDSEDKALMNGSESR 136
Query: 115 FKTTADFGFVTLDLTEV-YDRDQGIYTCRAWNLAGETFTSTT 155
F ++ G L + + + D G Y C + G T
Sbjct: 137 FFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIIT 178
Score = 36.2 bits (83), Expect = 0.018
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 8/67 (11%)
Query: 731 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN-KWGQAEISVNLECVVWSP 789
G ++ E + G Y+C G A I ++ V +
Sbjct: 37 GGVVLKEDALPGQK-------TEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAV 89
Query: 790 SQTKLVY 796
++ +
Sbjct: 90 KSSEHIN 96
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 63.5 bits (155), Expect = 1e-12
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360
G + S + L G + +C P +WF N P+ H+ + +
Sbjct: 1 GSKLQICVEPTSQK-LMPGSTLVLQCVAV--GSPIPHYQWFKNELPLTHETKKLYM---- 53
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
+ YV G Y C +N ++
Sbjct: 54 -----VPYVDLEHQGTYWCHVYNDRDSQDSKKV 81
Score = 51.6 bits (124), Expect = 2e-08
Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 14/93 (15%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+K V + G L L+ P +W N PL ++
Sbjct: 2 SKLQICVEPTSQKLMPGS--TLVLQCVAV--GSPIPHYQWFKNELPLTHETKK------- 50
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
+ V QG Y C +N +
Sbjct: 51 --LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKV 81
Score = 47.7 bits (114), Expect = 3e-07
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 14/95 (14%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDF 551
+ + + L G + + P +WF N L H +
Sbjct: 1 GSKLQICVEPTSQK-LMPGSTLVLQCV---AVGSPIPHYQWFKNELPLTHETKK------ 50
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ + Y E+ G Y C N S +K
Sbjct: 51 ---LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82
Score = 44.2 bits (105), Expect = 7e-06
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 16/91 (17%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 257
G Q E L G + A G ++ N P+ +
Sbjct: 1 GSKLQICVEPTSQK-LMPGSTLVLQCVAV----GSPIPHYQWFKNELPLTHETK------ 49
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288
+ + +E G Y C N +
Sbjct: 50 ---KLYMVPYVDLEHQGTYWCHVYNDRDSQD 77
Score = 44.2 bits (105), Expect = 7e-06
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 16/91 (17%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 746
G Q E L G + A G ++ N P+ +
Sbjct: 1 GSKLQICVEPTSQK-LMPGSTLVLQCVAV----GSPIPHYQWFKNELPLTHETK------ 49
Query: 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
+ + +E G Y C N +
Sbjct: 50 ---KLYMVPYVDLEHQGTYWCHVYNDRDSQD 77
Score = 42.3 bits (100), Expect = 3e-05
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P +WF N L H + + + Y E+ G Y C N S +K
Sbjct: 33 PHYQWFKNELPLTHETKK---------LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 65.8 bits (160), Expect = 2e-12
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 26/137 (18%)
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
G L I KIED+ Y C ++ + ++ V F S L
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV--------------FGLTANSDTHLLQ 111
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G S P V+ + + ++ ++ DSG +
Sbjct: 112 GQSLTLTLESPP--GSSPSVQCRSPRGKNIQGGKT----------LSVSQLELQDSGTWT 159
Query: 379 CRAWNKYGEDFTRATIK 395
C + + I
Sbjct: 160 CTVLQNQKKVEFKIDIV 176
Score = 52.7 bits (126), Expect = 5e-08
Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 41/188 (21%)
Query: 502 ISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR----------------- 544
+ V K+G + + + W + + G++
Sbjct: 1 MKKVVLGKKGDTVELTCTASQK--KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADS 58
Query: 545 YRTFHDFGIVILDILYCYEENSGVYECRATNKYGS-DVTKASLKCVSKTNLILESQL--- 600
R+ D G L I E+S Y C ++ + L S T+L+ L
Sbjct: 59 RRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLT 118
Query: 601 --------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
P V+ K G + L + ++SG + C
Sbjct: 119 LESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKK 168
Query: 653 DVTKASLK 660
K +
Sbjct: 169 VEFKIDIV 176
Score = 45.7 bits (108), Expect = 1e-05
Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 12/117 (10%)
Query: 40 KVQEVEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLK 99
++ ++ + Y + +E VF + + L + Q L L + P +
Sbjct: 71 IIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPP--GSSPS 128
Query: 100 IEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
++ G + TL ++++ +D G +TC + I
Sbjct: 129 VQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175
Score = 43.8 bits (103), Expect = 5e-05
Identities = 29/225 (12%), Positives = 55/225 (24%), Gaps = 77/225 (34%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHR-----------------YRT 620
G V L C + + + W + + G++ R+
Sbjct: 10 GDTVE---LTCTASQK-----KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 61
Query: 621 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQP 680
D G L I E+S Y C ++ + +L+ Q L +
Sbjct: 62 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLES 121
Query: 681 AGVPDSEDGRPPQFT--SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS 738
P S GK I+
Sbjct: 122 PPGS------SPSVQCRSP---------------------------------RGKNIQGG 142
Query: 739 HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L + +++D+G +TC + E +++
Sbjct: 143 K-----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV 176
Score = 33.8 bits (77), Expect = 0.13
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 17/56 (30%)
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEI-----------------SVNLECVV 786
G L I KIED+ Y C ++ + ++ S+ L
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLES 121
Score = 33.0 bits (75), Expect = 0.21
Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 17/77 (22%)
Query: 91 EPKNDPNLKIEWIFNGKPLELGSR-----------------FKTTADFGFVTLDLTEVYD 133
+++ W + + LG++ ++ D G L + +
Sbjct: 18 TASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKI 77
Query: 134 RDQGIYTCRAWNLAGET 150
D Y C + E
Sbjct: 78 EDSDTYICEVEDQKEEV 94
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 65.6 bits (159), Expect = 3e-12
Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 11/149 (7%)
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQP 303
I++ + + L + + Y C AT + + E + +E + P
Sbjct: 37 TQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE-IYSFPKDP 95
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
I L+ G +C++ V L+++ + + ++
Sbjct: 96 -----EIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLE 150
Query: 363 VMDIAY----VQSHDSGEYVCRAWNKYGE 387
+ V VCRA E
Sbjct: 151 TKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Score = 44.0 bits (103), Expect = 6e-05
Identities = 18/178 (10%), Positives = 38/178 (21%), Gaps = 35/178 (19%)
Query: 525 DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
W P + + ++ + N Y C AT +
Sbjct: 28 CESPFFSW-RTQIDSPLNGKVTNEGTTSTLTMNPVS--FGNEHSYLCTATCESRKLEKGI 84
Query: 585 SLKCVSKTNLILESQL------------------------PEVEWFYNGKKLPHGHRYRT 620
++ + E L E++ +
Sbjct: 85 QVE-IYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED 143
Query: 621 FHDFGIVILDILYCY----EENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLP 674
+ + + E+ V CRA S+ V + L+ +
Sbjct: 144 ADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM---DSVPTVRQAVKELQVYIS 198
Score = 40.9 bits (95), Expect = 6e-04
Identities = 26/212 (12%), Positives = 53/212 (25%), Gaps = 42/212 (19%)
Query: 570 ECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVIL 629
E R + G V+ L C + + P W P + + +
Sbjct: 8 ESRYLAQIGDSVS---LTCSTTGC-----ESPFFSW-RTQIDSPLNGKVTNEGTTSTLTM 58
Query: 630 DILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDG 689
+ + N Y C AT + ++ + E L E G
Sbjct: 59 NPVS--FGNEHSYLCTATCESRKLEKGIQVE-IYSFPKDPEIHLS---------GPLEAG 106
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI----RTVH 745
+P + P + ++ L +++ + R
Sbjct: 107 KPITVKCSVADVY---------------PFD--RLEIDLLKGDHLMKSQEFLEDADRKSL 149
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
+ + + V CRA + +
Sbjct: 150 ETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181
Score = 39.0 bits (90), Expect = 0.003
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 69 IVPLKPEFKLGEAQPLHLEAQ-VEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF---- 123
+ L + G+ + V P L+I+ + ++ +
Sbjct: 96 EIHLSGPLEAGKPITVKCSVADVYPF--DRLEIDLLKGDHLMKSQEFLEDADRKSLETKS 153
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKE 162
+ + T V + + CRA E + T+ + KE
Sbjct: 154 LEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKE 192
Score = 35.5 bits (81), Expect = 0.036
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 733 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791
I++ + + L + + Y C AT + + E + +E ++S +
Sbjct: 37 TQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE--IYSFPK 93
Score = 34.4 bits (78), Expect = 0.077
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 317 KDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGE 376
+ GDS C+ T W + K+ ++ + + V +
Sbjct: 14 QIGDSVSLTCSTT--GCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFGNEHS 68
Query: 377 YVCRAWNKYGEDFTRATI 394
Y+C A + + +
Sbjct: 69 YLCTATCESRKLEKGIQV 86
Score = 31.7 bits (71), Expect = 0.69
Identities = 21/199 (10%), Positives = 44/199 (22%), Gaps = 50/199 (25%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
+ W L + + TL + V ++ Y C A + +
Sbjct: 28 CESPFFSW-RTQIDSPLNGKVTN--EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGI 84
Query: 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVP-DSEDGRPPQFTSEFQHLS 213
+ + E E G +P V D P
Sbjct: 85 QVEIYSFPKDPEIHLSGPLEAG-------------KPITVKCSVADVYPF---------- 121
Query: 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI----RTVHAFGMVVLEILGTK 269
+ ++ L +++ + R + +
Sbjct: 122 -------------------DRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVI 162
Query: 270 IEDTGVYTCRATNKWGQAE 288
+ V CRA + +
Sbjct: 163 EDIGKVLVCRAKLHIDEMD 181
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 62.5 bits (152), Expect = 6e-12
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PP + + + C P + W +G + ++ + G
Sbjct: 8 PPVIRQGPVNQT-VAVDGTFVLSCV--ATGSPVPTILWRKDGVLVSTQDSRIKQLENG-- 62
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
V+ I Y + D+G Y C A GE A I
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94
Score = 60.2 bits (146), Expect = 3e-11
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 8/117 (6%)
Query: 193 GVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI 252
G S PP + + ++ G T+ + +G +
Sbjct: 1 GSSGSS--GPPVIRQGPVNQT-VAVDGTFVLSCV--ATGSPVPTILWRKDGVLVSTQDSR 55
Query: 253 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG-QPPKFTS 308
G+ L+I K+ DTG YTC A+ G+A S +E + QPP+ T
Sbjct: 56 IKQLENGV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110
Score = 59.8 bits (145), Expect = 4e-11
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 9/110 (8%)
Query: 682 GVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI 741
G S PP + + ++ G T+ + +G +
Sbjct: 1 GSSGSS--GPPVIRQGPVNQT-VAVDGTFVLSCV--ATGSPVPTILWRKDGVLVSTQDSR 55
Query: 742 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791
G+ L+I K+ DTG YTC A+ G+A S +E V
Sbjct: 56 IKQLENGV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIE--VQEFGV 101
Score = 58.6 bits (142), Expect = 1e-10
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 7/113 (6%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDF 551
+ P + T + + T P + W +G + +
Sbjct: 6 SGPPVIRQGPVNQT-VAVDGTFVLSCV---ATGSPVPTILWRKDGVLVSTQDSRIKQLEN 61
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVE 604
G+ L I Y ++G Y C A+ G A ++ + + +
Sbjct: 62 GV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPN 112
Score = 54.8 bits (132), Expect = 2e-09
Identities = 20/100 (20%), Positives = 27/100 (27%), Gaps = 5/100 (5%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + PV + L P I W +G +
Sbjct: 1 GSSGSSGPPVIRQGPV-NQTVAVDGTFVLSCVAT--GSPVPTILWRKDGVLVSTQDSRIK 57
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+ G L + D G YTC A +GE S I
Sbjct: 58 QLENG--VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIE 95
Score = 49.8 bits (119), Expect = 1e-07
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P + W +G + + G+ L I Y ++G Y C A+ G A +
Sbjct: 38 PTILWRKDGVLVSTQDSRIKQLENGV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 61.6 bits (150), Expect = 7e-12
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRT 547
++ + P + ++ T L +A + + T DP V+ W G P T
Sbjct: 2 SSGSSGPPIILQGPANQT-LAVDGTALLKCK---ATGDPLPVISWLKEGFTFPGRDPRAT 57
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ G L I ++G Y C AT+ G A L
Sbjct: 58 IQEQGT--LQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
Score = 61.3 bits (149), Expect = 8e-12
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PP + L +A +C T DP + W G ++ + + G
Sbjct: 8 PPIILQGPANQT-LAVDGTALLKCKAT--GDPLPVISWLKEGFTFPGRDPRATIQEQG-- 62
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ I ++ D+G Y C A + GE A +
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
Score = 60.5 bits (147), Expect = 2e-11
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 193 GVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASH 250
G S PP + + L+ A + A+ GD + +L G
Sbjct: 1 GSSGSS--GPPIILQGPANQT-LAVDGTALLKCKAT----GDPLPVISWLKEGFTFPGRD 53
Query: 251 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
T+ G L+I +I DTG YTC AT+ G+ S L+
Sbjct: 54 PRATIQEQG--TLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
Score = 60.5 bits (147), Expect = 2e-11
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 682 GVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASH 739
G S PP + + L+ A + A+ GD + +L G
Sbjct: 1 GSSGSS--GPPIILQGPANQT-LAVDGTALLKCKAT----GDPLPVISWLKEGFTFPGRD 53
Query: 740 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
T+ G L+I +I DTG YTC AT+ G+ S L+
Sbjct: 54 PRATIQEQG--TLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
Score = 52.4 bits (126), Expect = 1e-08
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P + W G P T + G L I ++G Y C AT+ G A L
Sbjct: 38 PVISWLKEGFTFPGRDPRATIQEQGT--LQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
Score = 52.4 bits (126), Expect = 1e-08
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + P+ + L L+ + DP I W+ G T
Sbjct: 1 GSSGSSGPPIILQGPA-NQTLAVDGTALLKCKAT--GDPLPVISWLKEGFTFPGRDPRAT 57
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ G TL + + D G YTC A + +GET S +
Sbjct: 58 IQEQG--TLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 61.9 bits (150), Expect = 1e-11
Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 15/101 (14%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKM------ 355
P L H C V+ P + W NG + + +
Sbjct: 3 MPASVQ-------LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 55
Query: 356 -VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + ++G Y A N +G+
Sbjct: 56 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 96
Score = 59.6 bits (144), Expect = 7e-11
Identities = 17/91 (18%), Positives = 22/91 (24%), Gaps = 8/91 (8%)
Query: 505 VTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRT-------FHDFGIVIL 556
QL H V P + W +NG L T L
Sbjct: 6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL 65
Query: 557 DILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ N+G Y A N +G
Sbjct: 66 RLNQPTHVNNGNYTLLAANPFGQASASIMAA 96
Score = 58.8 bits (142), Expect = 1e-10
Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 15/112 (13%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASHRIRT------ 254
P L H V G ++ +L+NG + + I T
Sbjct: 3 MPASV-------QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 55
Query: 255 -VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPK 305
L + + G YT A N +GQA S+ +D P+
Sbjct: 56 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107
Score = 57.3 bits (138), Expect = 5e-10
Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASHRIRT------ 743
P L H V G ++ +L+NG + + I T
Sbjct: 3 MPASV-------QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 55
Query: 744 -VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
L + + G YT A N +GQA S+
Sbjct: 56 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95
Score = 56.1 bits (135), Expect = 1e-09
Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 7/67 (10%)
Query: 601 PEVEWFYNGKKLPHGHRYRT-------FHDFGIVILDILYCYEENSGVYECRATNKYGSD 653
P + W +NG L T L + N+G Y A N +G
Sbjct: 30 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA 89
Query: 654 VTKASLK 660
Sbjct: 90 SASIMAA 96
Score = 50.7 bits (121), Expect = 7e-08
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 14/91 (15%)
Query: 77 KLGEAQPLH---LEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT-------TADFGFVTL 126
+L A +H + V P + W+FNG L S T L
Sbjct: 8 QLHTAVEMHHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL 65
Query: 127 DLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L + + G YT A N G+ S +I
Sbjct: 66 RLNQPTHVNNGNYTLLAANPFGQ--ASASIM 94
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 62.6 bits (152), Expect = 2e-11
Identities = 24/155 (15%), Positives = 41/155 (26%), Gaps = 28/155 (18%)
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+ + ++ +N I + I + D+G Y C+ + +
Sbjct: 36 EDNSTQWFHNESLISSQASS----------YFIDAATVNDSGEYRCQTNLSTLSDPVQLE 85
Query: 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNR 352
+ K+ D H C + N KV + NGK + +
Sbjct: 86 VHI-------GWLLLQA--PRWVFKEEDPIHLRCH-SWKNTALHKVTYLQNGKDRKYFHH 135
Query: 353 VKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387
I DSG Y CR
Sbjct: 136 NSDFH--------IPKATLKDSGSYFCRGLVGSKN 162
Score = 62.2 bits (151), Expect = 3e-11
Identities = 33/184 (17%), Positives = 53/184 (28%), Gaps = 46/184 (25%)
Query: 492 VAEAPKFITQIS-DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
+ PK + + + E S + + D +WF+N +
Sbjct: 2 TEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSP-EDNSTQWFHNESLISSQAS------ 54
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTK----------------------ASLKC 588
I +SG Y C+ SD + L+C
Sbjct: 55 ----SYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRC 110
Query: 589 VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
S N + L +V + NGK + H FH I ++SG Y CR
Sbjct: 111 HSWKN----TALHKVTYLQNGKDRKYFHHNSDFH-----IPKAT---LKDSGSYFCRGLV 158
Query: 649 KYGS 652
+
Sbjct: 159 GSKN 162
Score = 47.9 bits (114), Expect = 2e-06
Identities = 33/197 (16%), Positives = 48/197 (24%), Gaps = 57/197 (28%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
VT LKC + + +WF+N + I
Sbjct: 22 KDSVT---LKCQGAYS----PEDNSTQWFHNESLISSQAS----------SYFIDAATVN 64
Query: 638 NSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE 697
+SG Y C+ SD + LE + L Q
Sbjct: 65 DSGEYRCQTNLSTLSDPVQ------------LEVHIGWLLLQAPRWV------------- 99
Query: 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT 757
E + H V +L NGK + H I
Sbjct: 100 ------FKEEDPIHLRCH-SWKNTALHKVTYLQNGKDRKYFHHNSD--------FHIPKA 144
Query: 758 KIEDTGVYTCRATNKWG 774
++D+G Y CR
Sbjct: 145 TLKDSGSYFCRGLVGSK 161
Score = 44.5 bits (105), Expect = 3e-05
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
DS +C + + +WFHN I + I +DSGEY
Sbjct: 22 KDSVTLKCQGAY-SPEDNSTQWFHNESLISSQASS----------YFIDAATVNDSGEYR 70
Query: 379 CRAWNKYGED 388
C+ D
Sbjct: 71 CQTNLSTLSD 80
Score = 39.5 bits (92), Expect = 0.001
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 19/130 (14%)
Query: 41 VQEVEHALAGKYQRQPSGPE-------ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPK 93
+ +G+Y+ Q + E + + + FK + P+HL K
Sbjct: 58 IDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEED--PIHLRCHS-WK 114
Query: 94 NDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153
N K+ ++ NGK + + + +D G Y CR + +S
Sbjct: 115 NTALHKVTYLQNGKDRKYFHHNSD--------FHIPKATLKDSGSYFCRGLVGSKN-VSS 165
Query: 154 TTIYCSTKES 163
T+ + ++
Sbjct: 166 ETVNITITQA 175
Score = 35.6 bits (82), Expect = 0.031
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 285
V +L NGK + H I ++D+G Y CR
Sbjct: 115 NTALHKVTYLQNGKDRKYFHHNSD--------FHIPKATLKDSGSYFCRGLVGSK 161
Score = 32.9 bits (75), Expect = 0.24
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 14/86 (16%)
Query: 61 ETFAKPVFIV-PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
E K V + P + + L+ Q + + +W N + +
Sbjct: 3 EDLPKAVVFLEPQWYSVLEKD--SVTLKCQG-AYSPEDNSTQWFHNESLISSQAS----- 54
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWN 145
+ + D G Y C+
Sbjct: 55 -----SYFIDAATVNDSGEYRCQTNL 75
Score = 32.5 bits (74), Expect = 0.31
Identities = 8/75 (10%), Positives = 22/75 (29%), Gaps = 10/75 (13%)
Query: 722 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
+ + ++ +N I + I + D+G Y C+ + +
Sbjct: 36 EDNSTQWFHNESLISSQASS----------YFIDAATVNDSGEYRCQTNLSTLSDPVQLE 85
Query: 782 LECVVWSPSQTKLVY 796
+ + V+
Sbjct: 86 VHIGWLLLQAPRWVF 100
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 64.3 bits (156), Expect = 2e-11
Identities = 36/301 (11%), Positives = 66/301 (21%), Gaps = 76/301 (25%)
Query: 96 PNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLT-EVYDRDQGIYTCRAWNLAGETFTST 154
++ + L D ++ D TC T
Sbjct: 34 SEAQVHLALGDQRLN--PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ 91
Query: 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214
T+ ++ P P
Sbjct: 92 TV-----------------------------TIYSFP----------APNVILTKP---E 109
Query: 215 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG 274
+SEG + P + NG P + L + T ++
Sbjct: 110 VSEGTEVTVKCEAHP------RAKVTLNGVPAQPLG--------PRAQLLLKATPEDNGR 155
Query: 275 VYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEG-LKDGDSAHFECTLTPVND 333
++C AT + I N + P+ + C +
Sbjct: 156 SFSCSATLEVAGQLIHKNQT-RELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWG--N 212
Query: 334 PELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
P +++ +G V+ G Y+CRA + GE T
Sbjct: 213 PLPELKCLKDGTFPLPIGESVTVT-------------RDLEGTYLCRARSTQGEVTREVT 259
Query: 394 I 394
+
Sbjct: 260 V 260
Score = 58.9 bits (142), Expect = 1e-09
Identities = 36/288 (12%), Positives = 70/288 (24%), Gaps = 45/288 (15%)
Query: 309 HIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDI- 366
+ S L+ C+L + E +V + + V +D +
Sbjct: 8 QLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTVTYGNDSFSAKASVS 65
Query: 367 AYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQP 426
+ + C T T+ + P + + E ++G +
Sbjct: 66 VTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF---------PAPNVILTKPEVSEGTEV 116
Query: 427 V----AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTD-PDLVCELFSNFFPSQ 481
A ++ V G A + TP + C
Sbjct: 117 TVKCEAHPRAKVT-------LNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQL 169
Query: 482 GQQPVAQAAPVAEAPKFI-TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKK-L 539
+ + V P+ E + +P ++ +G L
Sbjct: 170 IHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWG--NPLPELKCLKDGTFPL 227
Query: 540 PHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
P G T G Y CRA + G + ++
Sbjct: 228 PIGESVTVTRDL---------------EGTYLCRARSTQGEVTREVTV 260
Score = 55.1 bits (132), Expect = 2e-08
Identities = 47/310 (15%), Positives = 77/310 (24%), Gaps = 73/310 (23%)
Query: 501 QISDVTQLKEGQSAHFE---ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILD 557
Q+ L+ L PV + V ++L +D
Sbjct: 8 QLVSPRVLEVDTQGTVVCSLDGLFPV--SEAQVHLALGDQRLNP--TVTYGNDSFSAKAS 63
Query: 558 ILYCYE-ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEV------------- 603
+ E E + C S T ++ S + PEV
Sbjct: 64 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH 123
Query: 604 ---EWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+ NG P G R + L + E+N + C AT + + +
Sbjct: 124 PRAKVTLNGVPAQPLGPRAQ---------LLLKATPEDNGRSFSCSATLEVAGQLIHKN- 173
Query: 660 KCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV 719
L P ++ P + E
Sbjct: 174 -----QTRELRVLYG---------PRLDERDCPGNWT-------WPENSQQTPMCQ--AW 210
Query: 720 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
G+ ++ L +G TV + G Y CRA + G+
Sbjct: 211 GNPLPELKCLKDGTFPLPIGESVTV-------------TRDLEGTYLCRARSTQGEVTRE 257
Query: 780 VNLECVVWSP 789
V + V SP
Sbjct: 258 VTV--NVLSP 265
Score = 45.0 bits (106), Expect = 5e-05
Identities = 35/251 (13%), Positives = 58/251 (23%), Gaps = 74/251 (29%)
Query: 444 SDVTQLKEGQSAHFEARLTPV--TDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQ 501
VT + SA +T L C + Q Q + P
Sbjct: 49 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAV-IL---GNQSQETLQTVTIYSFPAPNVI 104
Query: 502 ISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 561
++ + EG + P + + P
Sbjct: 105 LTKPE-VSEGTEVTVKCEAHP--RAKVTLNGVPAQPLGPRAQLLLKATP----------- 150
Query: 562 YEENSGVYECRATNKYGSDVTK-------------------------------ASLKCVS 590
E+N + C AT + + + C +
Sbjct: 151 -EDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA 209
Query: 591 KTNLILESQLPEVEWFYNGKK-LPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATN 648
N LPE++ +G LP G T G Y CRA +
Sbjct: 210 WGN-----PLPELKCLKDGTFPLPIGESVTVTRDL---------------EGTYLCRARS 249
Query: 649 KYGSDVTKASL 659
G + ++
Sbjct: 250 TQGEVTREVTV 260
Score = 43.1 bits (101), Expect = 2e-04
Identities = 28/228 (12%), Positives = 55/228 (24%), Gaps = 67/228 (29%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
++ KPE G + ++ + P+ + NG P +
Sbjct: 100 APNVILTKPEVSEGT--EVTVKCEAHPR------AKVTLNGVPAQPLG--------PRAQ 143
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
L L + + ++C A ++ R +
Sbjct: 144 LLLKATPEDNGRSFSCSATLEVAGQLIHKN------QTRELRVLYG-------------- 183
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP 245
P ++ P + E G+ ++ L +G
Sbjct: 184 ---------PRLDERDCPGNWT-------WPENSQQTPMCQ--AWGNPLPELKCLKDGTF 225
Query: 246 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
TV + G Y CRA + G+ V +
Sbjct: 226 PLPIGESVTV-------------TRDLEGTYLCRARSTQGEVTREVTV 260
Score = 39.7 bits (92), Expect = 0.003
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 18/96 (18%)
Query: 63 FAKPVFIVPLKPE-FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKP-LELGSRFKTTAD 120
P P + E Q P +++ + +G L +G T D
Sbjct: 181 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGN--PLPELKCLKDGTFPLPIGESVTVTRD 238
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+G Y CRA + GE T+
Sbjct: 239 --------------LEGTYLCRARSTQGEVTREVTV 260
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 63.8 bits (154), Expect = 3e-11
Identities = 25/166 (15%), Positives = 43/166 (25%), Gaps = 30/166 (18%)
Query: 254 TVHAFGMVVLEILGTKIEDTGVYTCRATNK-----WGQAEISVNLECVDKSKGQPPKFTS 308
+V L + +D G Y C+ +G SV L+ V S
Sbjct: 83 SVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK-VTGHTPSNNVHVS 141
Query: 309 HIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-----FHKNRVKMVSDFGFVV 363
+ ++ + +G+ C T V W+ + + FG
Sbjct: 142 TAEVVQ-VDEGNDITMTCPCTD--CANANVTWYTGPTFFENYETGTYQPLANKNQFGITW 198
Query: 364 MD----------------IAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
I + D+G C GE +
Sbjct: 199 FSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRS 244
Score = 49.5 bits (117), Expect = 1e-06
Identities = 29/298 (9%), Positives = 56/298 (18%), Gaps = 71/298 (23%)
Query: 499 ITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFH--DFGIVI 555
+ ++ G + V+ W ++ + +
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHG 615
Y+E+ G + RA+ + T
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPT--------------------------------- 91
Query: 616 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPE 675
+ + + ++ G Y C+ K V
Sbjct: 92 ----------LRLTHVH---PQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNV 138
Query: 676 LRRQPAGVP-----------DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM 724
V D T + E ++
Sbjct: 139 HVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGP-TFFENYETGTYQPLANKNQFGIT 197
Query: 725 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
E + R G L I KI D G C G+ + +
Sbjct: 198 WF-------SSEIAGR---ASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
Score = 47.6 bits (112), Expect = 6e-06
Identities = 27/181 (14%), Positives = 47/181 (25%), Gaps = 22/181 (12%)
Query: 117 TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEG 176
+ A+ TL LT V+ +D G Y C+ + T S + T
Sbjct: 83 SVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRT-EFGLDAKSVVLKVTGHTPSNNVHVS 141
Query: 177 LEKIQDLEE----SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD 232
++ ++E ++ T + E ++
Sbjct: 142 TAEVVQVDEGNDITMTCPCTDCA------NANVTWYTGP-TFFENYETGTYQPLANKNQF 194
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
E + R G L I KI D G C G+ + +
Sbjct: 195 GITWF-------SSEIAGR---ASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRS 244
Query: 293 L 293
Sbjct: 245 S 245
Score = 47.2 bits (111), Expect = 8e-06
Identities = 29/281 (10%), Positives = 56/281 (19%), Gaps = 65/281 (23%)
Query: 319 GDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
G + C+ N + W P V Y + +
Sbjct: 17 GGTVELPCSYQLANDTQPPVISWLKGASPDRST-----------KVFKGNYNWQGEGLGF 65
Query: 378 VC--RAWNKYGEDFTRATIKCFGKGGVYLDSLQPE----------SLARIRELENAQGQQ 425
V +G+ RA++ + L + P+ + E
Sbjct: 66 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125
Query: 426 PVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQP 485
+ ++ V + EG C
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQ-VDEGNDITMT------------CP------------- 159
Query: 486 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY 545
A +T + T + ++ ++ G R
Sbjct: 160 -CTDCANAN----VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAG-------RA 207
Query: 546 RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+VI ++G C G S
Sbjct: 208 SFSGARNLVIRAAK---ITDAGRVWCELATGQGELDADRSS 245
Score = 34.1 bits (77), Expect = 0.15
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 743 TVHAFGMVVLEILGTKIEDTGVYTCRATNK-----WGQAEISVNLECVVWSPSQTKLVYS 797
+V L + +D G Y C+ +G SV L+ +PS V +
Sbjct: 83 SVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVST 142
Query: 798 LFEV 801
V
Sbjct: 143 AEVV 146
Score = 33.7 bits (76), Expect = 0.17
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 3/57 (5%)
Query: 99 KIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
K ++ E+ R + L + D G C GE +
Sbjct: 191 KNQFGITWFSSEIAGRASFSGAR---NLVIRAAKITDAGRVWCELATGQGELDADRS 244
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 61.8 bits (149), Expect = 4e-11
Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 37/200 (18%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGH-RYRTFHDFGIVILDILYCYE 636
G+ V L C ++ ++W NG++LP H ++ DF V
Sbjct: 14 GTSVE---LTCPLDSD-------ENLKWEKNGQELPQKHDKHLVLQDFSEV--------- 54
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
E+SG Y C + + + ++ A D++ + S
Sbjct: 55 EDSGYYVCYTPASNKNTYLYLKAR---------VGSADDAKKDAAKKDDAKKDDAKKDGS 105
Query: 697 EFQHLSNLSEGEIAHFEASLI-PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEIL 755
+ NL + + + + S++ G T+++L +G I + + G +
Sbjct: 106 QTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD-- 163
Query: 756 GTKIEDTGVYTCRATNKWGQ 775
G Y C+ +
Sbjct: 164 -----PRGTYQCQGAKETSN 178
Score = 58.3 bits (140), Expect = 7e-10
Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 41/166 (24%)
Query: 242 NGKPIEASH-RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD--- 297
NG+ + H + + F +++ED+G Y C + +
Sbjct: 34 NGQELPQKHDKHLVLQDF---------SEVEDSGYYVCYTPASNKNTYLYLKARVGSADD 84
Query: 298 ----------------KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWF 341
K G ++ ++G + S C + ++W
Sbjct: 85 AKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC-----GLTDKTIKWL 139
Query: 342 HNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387
+G I N K + G D G Y C+ +
Sbjct: 140 KDGSIISPLNATKNTWNLGNNAKD-------PRGTYQCQGAKETSN 178
Score = 50.6 bits (120), Expect = 2e-07
Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 39/193 (20%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
D + ++W NG+ L D +EV D G Y C +T
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQ------DFSEV--EDSGYYVCYTPASNK----NT 71
Query: 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214
+Y + + + ++ K D ++ S+ N
Sbjct: 72 YLYLKARVGSADDAKKDAAKKDDAKKDDAKKD-------------------GSQTNKAKN 112
Query: 215 LSEGEIAHFEASLI-PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDT 273
L + + + + S++ G T+++L +G I + + G +
Sbjct: 113 LVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAK-------DPR 165
Query: 274 GVYTCRATNKWGQ 286
G Y C+ +
Sbjct: 166 GTYQCQGAKETSN 178
Score = 49.9 bits (118), Expect = 4e-07
Identities = 26/171 (15%), Positives = 46/171 (26%), Gaps = 59/171 (34%)
Query: 525 DPDLVVEWFYNGKKLPHGH-RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS---- 579
D D ++W NG++LP H ++ DF V E+SG Y C +
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQDFSEV---------EDSGYYVCYTPASNKNTYLY 74
Query: 580 ------DVTKASLKCVSKTN--------------------------------LILESQLP 601
A K + L
Sbjct: 75 LKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDK 134
Query: 602 EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
++W +G + + + + G D G Y+C+ + +
Sbjct: 135 TIKWLKDGSIISPLNATKNTWNLGNNAKDP-------RGTYQCQGAKETSN 178
Score = 44.5 bits (104), Expect = 3e-05
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 22/142 (15%)
Query: 14 SGTLKCL---GQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEETFAKPVFIV 70
SG C K+ YL + +G+A K + A K + G + AK + V
Sbjct: 57 SGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQV 116
Query: 71 PLKPEFKLGEAQPLHLEAQVEPK-NDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLT 129
+ V + I+W+ +G + + K T + G D
Sbjct: 117 DGSRG-----------DGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD-- 163
Query: 130 EVYDRDQGIYTCRAWNLAGETF 151
+G Y C+
Sbjct: 164 -----PRGTYQCQGAKETSNPL 180
Score = 41.4 bits (96), Expect = 4e-04
Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 19/142 (13%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G S C L D + ++W NG+ + K+ +V + + DSG YV
Sbjct: 14 GTSVELTCPL----DSDENLKWEKNGQELPQKHDKHLVLQ--------DFSEVEDSGYYV 61
Query: 379 CRAWNKYGEDF----TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVA 434
C + R K + A+ + + + V
Sbjct: 62 CYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRG 121
Query: 435 EAPKFIT---QISDVTQLKEGQ 453
+ +T + LK+G
Sbjct: 122 DGSVLLTCGLTDKTIKWLKDGS 143
Score = 37.2 bits (85), Expect = 0.010
Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLT-PVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+A K +Q + L + + + + D ++W +G + + + + G
Sbjct: 99 DAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLG 158
Query: 553 IVILDILYCYEENSGVYECRATNKYGS 579
D G Y+C+ + +
Sbjct: 159 NNAKDP-------RGTYQCQGAKETSN 178
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 60.3 bits (146), Expect = 2e-10
Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 46/184 (25%)
Query: 492 VAEAPKFITQIS-DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
+ PK + + ++ E S + + D +WF+N +
Sbjct: 2 TEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSP-EDQSTQWFHNESLISSQAS------ 54
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTK----------------------ASLKC 588
I ++SG Y C+ SD + L+C
Sbjct: 55 ----SYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRC 110
Query: 589 VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
S N + L +V + NGK + H F+ ++SG Y CR
Sbjct: 111 HSWKN----TALHKVTYLQNGKGRKYFHHNSDFYIPKAT--------LKDSGSYFCRGLV 158
Query: 649 KYGS 652
+
Sbjct: 159 GSKN 162
Score = 58.7 bits (142), Expect = 5e-10
Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 32/157 (20%)
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+ + ++ +N I + I ++D+G Y C+ + +
Sbjct: 36 EDQSTQWFHNESLISSQASS----------YFIDAATVDDSGEYRCQTQLSTLSDPVQLE 85
Query: 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI--FHK 350
+ + Q P++ K+ D H C + N KV + NGK FH
Sbjct: 86 VH-IGWLLLQAPRWV--------FKEEDPIHLRC-HSWKNTALHKVTYLQNGKGRKYFHH 135
Query: 351 NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387
N I DSG Y CR
Sbjct: 136 NSD----------FYIPKATLKDSGSYFCRGLVGSKN 162
Score = 46.4 bits (110), Expect = 9e-06
Identities = 37/222 (16%), Positives = 57/222 (25%), Gaps = 58/222 (26%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
VT LKC + + +WF+N + I +
Sbjct: 22 KDSVT---LKCQGAYS----PEDQSTQWFHNESLISSQAS----------SYFIDAATVD 64
Query: 638 NSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE 697
+SG Y C+ SD + LE + L Q P
Sbjct: 65 DSGEYRCQTQLSTLSDPVQ------------LEVHIGWLLLQA----------PR----- 97
Query: 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT 757
E + H V +L NGK + H I
Sbjct: 98 ----WVFKEEDPIHLRCH-SWKNTALHKVTYLQNGKGRKYFHHNSD--------FYIPKA 144
Query: 758 KIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLF 799
++D+G Y CR S ++ + + S F
Sbjct: 145 TLKDSGSYFCRGLVGSK-NVSSETVQITITQGLAVSTISSFF 185
Score = 42.9 bits (101), Expect = 1e-04
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 11/70 (15%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
DS +C + + +WFHN I + I DSGEY
Sbjct: 22 KDSVTLKCQGAY-SPEDQSTQWFHNESLISSQASS----------YFIDAATVDDSGEYR 70
Query: 379 CRAWNKYGED 388
C+ D
Sbjct: 71 CQTQLSTLSD 80
Score = 36.0 bits (83), Expect = 0.028
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+ + + FK + P+HL KN K+ ++ NGK +
Sbjct: 87 HIGWLLLQAPRWVFKEED--PIHLRCHS-WKNTALHKVTYLQNGKGRKYFHHNSD----- 138
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
+ + +D G Y CR + + T
Sbjct: 139 ---FYIPKATLKDSGSYFCRGLVGSKNVSSET 167
Score = 32.9 bits (75), Expect = 0.29
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 14/86 (16%)
Query: 61 ETFAKPVFIV-PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
E K V + P + + L+ Q + + +W N + +
Sbjct: 3 EDLPKAVVFLEPQWYRVLEKD--SVTLKCQG-AYSPEDQSTQWFHNESLISSQAS----- 54
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWN 145
+ + D G Y C+
Sbjct: 55 -----SYFIDAATVDDSGEYRCQTQL 75
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 58.1 bits (140), Expect = 3e-10
Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 16/108 (14%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGK-------PIFHKNRV 353
F S + G S C P +++W+ G+ ++ R+
Sbjct: 19 SHMAGFVQAPLSQQRW-VGGSVELHCEAV--GSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 354 KMVSDFGFVVMD------IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
V I + D+G Y CRA N + +
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123
Score = 57.7 bits (139), Expect = 4e-10
Identities = 23/120 (19%), Positives = 35/120 (29%), Gaps = 13/120 (10%)
Query: 687 EDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPV---------GDQTMTVEFLYNGKPI 735
F G A PV L++G +
Sbjct: 17 RGSHMAGFVQAPLSQQ-RWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 736 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLV 795
+ H T H + I EDTG Y CRA+N + ++ V W +Q ++
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR-VKWVRAQAVVL 134
Score = 57.7 bits (139), Expect = 4e-10
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 18/111 (16%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLP--------- 540
+ F+ G S P ++W++ G+
Sbjct: 17 RGSHMAGFVQAPLSQQ-RWVGGSVELHCE---AVGSPVPEIQWWFEGQGPNDICSQLWDG 72
Query: 541 ----HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
H + T+H + I EE++G YECRA+N + + +
Sbjct: 73 ARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123
Score = 54.3 bits (130), Expect = 6e-09
Identities = 20/107 (18%), Positives = 29/107 (27%), Gaps = 12/107 (11%)
Query: 198 EDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPV---------GDQTMTVEFLYNGKPI 246
F G A PV L++G +
Sbjct: 17 RGSHMAGFVQAPLSQQ-RWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 247 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+ H T H + I EDTG Y CRA+N + ++
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122
Score = 48.9 bits (116), Expect = 5e-07
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 13/73 (17%)
Query: 601 PEVEWFYNGKKLP-------------HGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
PE++W++ G+ H + T+H + I EE++G YECRA+
Sbjct: 51 PEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRAS 110
Query: 648 NKYGSDVTKASLK 660
N + + +
Sbjct: 111 NDPDRNHLTRAPR 123
Score = 48.9 bits (116), Expect = 5e-07
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 18/111 (16%)
Query: 60 EETFAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL--------- 109
F+ + +G + LH EA P P +I+W F G+
Sbjct: 16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPV--P--EIQWWFEGQGPNDICSQLWD 71
Query: 110 ----ELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ T T+ + + + D G Y CRA N +
Sbjct: 72 GARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 56.7 bits (137), Expect = 3e-10
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 12/99 (12%)
Query: 296 VDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM 355
S + + + + G + C P ++ W +G P+ +
Sbjct: 3 SGSSGLEEVQLVVEPEGGA-VAPGGTVTLTCE--VPAQPSPQIHWMKDGVPLPLPPSPVL 59
Query: 356 VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + + D G Y C A + +
Sbjct: 60 I---------LPEIGPQDQGTYSCVATHSSHGPQESRAV 89
Score = 51.6 bits (124), Expect = 2e-08
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 57 SGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK 116
S + +V + + + L +V P+ +I W+ +G PL L
Sbjct: 2 SSGSSGLEEVQLVVEPEG-GAVAPGGTVTLTCEVPA--QPSPQIHWMKDGVPLPLPPSP- 57
Query: 117 TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L L E+ +DQG Y+C A + + S +
Sbjct: 58 --------VLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89
Score = 50.9 bits (122), Expect = 3e-08
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 12/99 (12%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
Q E + + ++ G + + ++ +G P+
Sbjct: 10 EVQLVVEPEGGA-VAPGGTVTLTCE--VPAQPSPQIHWMKDGVPLPLPPS---------P 57
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
VL + +D G Y+C AT+ + S + + P
Sbjct: 58 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 48.9 bits (117), Expect = 2e-07
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 14/99 (14%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRT 547
+ E + + + + G + V P + W +G LP
Sbjct: 4 GSSGLEEVQLVVEPEGGA-VAPGGTVTLTCE---VPAQPSPQIHWMKDGVPLPLPPSP-- 57
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+L + ++ G Y C AT+ ++
Sbjct: 58 -------VLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89
Score = 47.4 bits (113), Expect = 6e-07
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
Q E + + ++ G + + ++ +G P+
Sbjct: 10 EVQLVVEPEGGA-VAPGGTVTLTCE--VPAQPSPQIHWMKDGVPLPLPPS---------P 57
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
VL + +D G Y+C AT+ + S +
Sbjct: 58 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90
Score = 40.1 bits (94), Expect = 2e-04
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P++ W +G LP +L + ++ G Y C AT+ ++
Sbjct: 40 PQIHWMKDGVPLPLPPSP---------VLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 57.7 bits (139), Expect = 3e-10
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 15/110 (13%)
Query: 490 APVAEAPKFITQISDVTQLKEGQSAHFEARLT---PVTDPDLVVEWF---------YNGK 537
+ + FI + T +K G+ F A++ + P ++WF GK
Sbjct: 2 SSGSSGILFIEKPQGGT-VKVGEDITFIAKVKAEDLLRKPT--IKWFKGKWMDLASKAGK 58
Query: 538 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L + + I+ + +G Y C T K D L+
Sbjct: 59 HLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
Score = 54.2 bits (130), Expect = 5e-09
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 16/110 (14%)
Query: 299 SKGQP-PKFTSHIKSLEGLKDGDSAHFECTLT---PVNDPELKVEWFHN---------GK 345
S G F + +K G+ F + + P ++WF GK
Sbjct: 2 SSGSSGILFIEKPQGGT-VKVGEDITFIAKVKAEDLLRKPT--IKWFKGKWMDLASKAGK 58
Query: 346 PIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ K + S M I + + +G Y C K D ++
Sbjct: 59 HLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
Score = 53.8 bits (129), Expect = 7e-09
Identities = 24/122 (19%), Positives = 36/122 (29%), Gaps = 12/122 (9%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASL--IPVGDQ--------TMTVEFLYNGKPI 246
S F + Q + GE F A + + + GK +
Sbjct: 2 SSGSSGILFIEKPQGGTV-KVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 247 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKF 306
+ ++I+ K G Y C T K S +LE V +S G P
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE-VHESTGTTPNI 119
Query: 307 TS 308
S
Sbjct: 120 DS 121
Score = 50.8 bits (121), Expect = 9e-08
Identities = 21/118 (17%), Positives = 33/118 (27%), Gaps = 13/118 (11%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASL--IPVGDQ--------TMTVEFLYNGKPI 735
S F + Q + GE F A + + + GK +
Sbjct: 2 SSGSSGILFIEKPQGGTV-KVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 736 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTK 793
+ ++I+ K G Y C T K S +LE V + T
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE--VHESTGTT 116
Score = 46.9 bits (111), Expect = 2e-06
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 601 PEVEWF---------YNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
P ++WF GK L + + I+ + +G Y C T K
Sbjct: 40 PTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDK 99
Query: 652 SDVTKASLK 660
D L+
Sbjct: 100 FDSCSFDLE 108
Score = 40.4 bits (94), Expect = 3e-04
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 15/108 (13%)
Query: 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVE---PKNDPNLKIEW---------IFNGKP 108
+ +FI + + + + A+V+ P I+W GK
Sbjct: 3 SGSSGILFIEKPQG-GTVKVGEDITFIAKVKAEDLLRKP--TIKWFKGKWMDLASKAGKH 59
Query: 109 LELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L+L F+ + + + + D G Y C S +
Sbjct: 60 LQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDL 107
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 60.3 bits (145), Expect = 4e-10
Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 39/197 (19%)
Query: 229 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV-----LEILGTKIEDTGVYTCRATNK 283
D + V F Y+ + H G L + + D G+YTC K
Sbjct: 47 DKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLK 106
Query: 284 WGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL-KVEWFH 342
+ +E + +P ++ GD+ C++ + + KV W
Sbjct: 107 NESMVMKKPVE-LWVLPEEPRDLR--------VRVGDTTQMRCSIQSTEEKRVTKVNWMF 157
Query: 343 NGKP----------------------IFHKNRVKMVSDF--GFVVMDIAYVQSHDSGEYV 378
+ +NRV + D + + V+ D G Y
Sbjct: 158 SSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYT 217
Query: 379 CRAWNKYGEDFTRATIK 395
C + E +
Sbjct: 218 CSIYVGKLESRKTIVLH 234
Score = 55.3 bits (132), Expect = 2e-08
Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 46/220 (20%)
Query: 598 SQLPEVEWFYNGKKLPHGHRYR---------TFHDFGIVILDILYCYEENSGVYECRATN 648
V ++Y+ +P G R++ +D +++ D+ + + G+Y C
Sbjct: 50 DASEYVLFYYSNLSVPTG-RFQNRSHLVGDTFHNDGSLLLQDVQ---KADEGIYTCEIRL 105
Query: 649 KYGSDVTKASLKCVSKTNLILESQLPELRRQPAG--------VPDSEDGRPPQFTSEFQH 700
K S V K ++ L + + P R G + +E+ R + F
Sbjct: 106 KNESMVMKKPVE------LWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS 159
Query: 701 LSNLSEGEIAHFEASLIPVGDQTMT-----VEFLYNGKPIEASHRIRTVHAFGMVVLEIL 755
S+ E + +++++ Q++ V+ + + S +++TV
Sbjct: 160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKE--------- 210
Query: 756 GTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLV 795
D G+YTC ++ ++ L VV Q +
Sbjct: 211 ----SDQGIYTCSIYVGKLESRKTIVLH-VVQDEFQRTIS 245
Score = 53.3 bits (127), Expect = 9e-08
Identities = 30/244 (12%), Positives = 64/244 (26%), Gaps = 84/244 (34%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTD-PDLVVEW---------------FYNGKKL 539
P + + G+S + + V+W +Y+ +
Sbjct: 6 PGLTVSSPQLR-VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 540 PHGHRYR---------TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK------- 583
P G R++ +D +++ D+ + + G+Y C K S V K
Sbjct: 65 PTG-RFQNRSHLVGDTFHNDGSLLLQDVQ---KADEGIYTCEIRLKNESMVMKKPVELWV 120
Query: 584 ---------------ASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFH------ 622
++C ++ E ++ +V W ++ ++
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQST--EEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSG 178
Query: 623 ---------------------DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 661
D I + + E + G+Y C L
Sbjct: 179 KFQSLGRFRNRVDLTGDISRNDGSIKLQTV---KESDQGIYTCSIYVGKLESRKTIVLHV 235
Query: 662 VSKT 665
V
Sbjct: 236 VQDE 239
Score = 49.9 bits (118), Expect = 1e-06
Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 50/232 (21%)
Query: 92 PKNDPNLKIEWIFNGKPLEL--------------GSRFKTTADF------GFVTLDLTEV 131
+ +++W+F+ + RF+ + +L L +V
Sbjct: 32 TEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV 91
Query: 132 YDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQP 191
D+GIYTC +E P+ L +R
Sbjct: 92 QKADEGIYTCEIRLKNESMVMKKP---------VELWVLPEEPRDLRVRVGDTTQMRCSI 142
Query: 192 AGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT-----VEFLYNGKPI 246
+ R + F S+ E + +++++ Q++ V+ +
Sbjct: 143 QSTEEK---RVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRN 199
Query: 247 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
+ S +++TV D G+YTC ++ ++ L V
Sbjct: 200 DGSIKLQTVKE-------------SDQGIYTCSIYVGKLESRKTIVLHVVQD 238
Score = 34.1 bits (77), Expect = 0.16
Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 28/141 (19%)
Query: 67 VFIVPLKPEF---KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL-------------- 109
++++P +P ++G+ + Q + K+ W+F+
Sbjct: 118 LWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRV-TKVNWMFSSGSHTEEETVLSYDSNMR 176
Query: 110 --------ELGSRFKTTADF--GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCS 159
+R T D ++ L V + DQGIYTC + E+ + ++
Sbjct: 177 SGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236
Query: 160 TKESLIERTQHPKGEEGLEKI 180
E + P ++G + I
Sbjct: 237 QDEFQRTISPTPPTDKGQQGI 257
Score = 33.3 bits (75), Expect = 0.25
Identities = 34/294 (11%), Positives = 68/294 (23%), Gaps = 63/294 (21%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLT-PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
P T L G+S C + +V+W + V
Sbjct: 5 LPGLTVSSPQLRVHV-GESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLAR-IRELEN 420
V +G + R+ ++ L +Q E+
Sbjct: 64 VP----------TGRFQNRSHLVGDTFHNDGSLL--------LQDVQKADEGIYTCEIRL 105
Query: 421 AQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE--ARLTPVTDPDLVCELFSNFF 478
+ + + P+ + ++ G + + T V +F
Sbjct: 106 KNESMVMKKPVELWVLPEEPRDLR----VRVGDTTQMRCSIQSTEEKRVTKVNWMF---- 157
Query: 479 PSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKK 538
+ E ++ S++ K F R+ D
Sbjct: 158 ---------SSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDI------------ 196
Query: 539 LPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT 592
+ +D I + + E + G+Y C L V
Sbjct: 197 --------SRNDGSIKLQTV---KESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 58.0 bits (140), Expect = 7e-10
Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 28/166 (16%)
Query: 232 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
+ E + +S + R L I D Y + N + +
Sbjct: 31 QKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFL 90
Query: 292 N-LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHK 350
LE V K P + +A C + D ELK + + +
Sbjct: 91 YVLEMVSK-----PMIY---------WECSNATLTCEVLEGTDVELK--LYQGKEHLRSL 134
Query: 351 NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396
++Y ++ + C+A N+ ++ + C
Sbjct: 135 R-----------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169
Score = 51.1 bits (122), Expect = 2e-07
Identities = 25/176 (14%), Positives = 48/176 (27%), Gaps = 39/176 (22%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKL----------PHGHRYRTFHDFGIVILDIL 559
+ F P P V W K+ + R + D L I
Sbjct: 9 VYGNVTFH---VPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIY 65
Query: 560 YCYEENSGVYECRATNKYGSD---------VTKASLKCVSKTNLIL-----ESQLPEVEW 605
+ YE + N + V+K + +N L E E++
Sbjct: 66 NLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIY-WECSNATLTCEVLEGTDVELKL 124
Query: 606 FYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 661
+ + L + + Y + ++C+A N+ + + C
Sbjct: 125 YQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169
Score = 38.8 bits (90), Expect = 0.003
Identities = 13/113 (11%), Positives = 33/113 (29%), Gaps = 16/113 (14%)
Query: 49 AGKYQRQPSGP--EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG 106
+Y+ + F V + KP E L +V +++++
Sbjct: 72 EDEYEMESPNITDTMKFFLYVLEMVSKPMIYW-ECSNATLTCEVL--EGTDVELKLYQGK 128
Query: 107 KPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCS 159
+ L + ++ + + + C+A N + + C
Sbjct: 129 EHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 170
Score = 34.1 bits (78), Expect = 0.092
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 10/76 (13%)
Query: 92 PKNDPNLKIEWIFNGKPL--------ELGSRFK--TTADFGFVTLDLTEVYDRDQGIYTC 141
P N P ++ W + S FK D +L + + D+ Y
Sbjct: 18 PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEM 77
Query: 142 RAWNLAGETFTSTTIY 157
+ N+ +
Sbjct: 78 ESPNITDTMKFFLYVL 93
Score = 33.0 bits (75), Expect = 0.21
Identities = 30/197 (15%), Positives = 46/197 (23%), Gaps = 58/197 (29%)
Query: 598 SQLPEVEWFYNGKKL----------PHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
L EV W K+ + R + D L I + YE +
Sbjct: 21 VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP 80
Query: 648 NKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 707
N + K L + + P E + + E
Sbjct: 81 NITDT----------MKFFLYVLEMVS----------------KPMIYWECSNATLTCE- 113
Query: 708 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767
V + T LY GK S R + + C
Sbjct: 114 -----------VLEGTDVELKLYQGKEHLRSLR----------QKTMSYQWTNLRAPFKC 152
Query: 768 RATNKWGQAEISVNLEC 784
+A N+ Q + C
Sbjct: 153 KAVNRVSQESEMEVVNC 169
Score = 33.0 bits (75), Expect = 0.21
Identities = 10/73 (13%), Positives = 19/73 (26%)
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+ E + +S + R L I D Y + N + +
Sbjct: 31 QKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFL 90
Query: 781 NLECVVWSPSQTK 793
+ +V P
Sbjct: 91 YVLEMVSKPMIYW 103
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 56.1 bits (135), Expect = 1e-09
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
Query: 285 GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNG 344
G + S L V PP +S + G+ +C + P+ ++ W
Sbjct: 1 GSSGSSGTLT-V----NGPPIISST--QTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKE 52
Query: 345 KPIF----HKNRVKMVSDFGFVVMD--IAYVQSHD-SGEYVCRAWNKYGEDFTRATIK 395
+ + V+ +S V+ I+ + D Y C AWN +G D +K
Sbjct: 53 NVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
Score = 47.6 bits (113), Expect = 9e-07
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK------T 117
P+ GE + + P P+ +I W + LE G+ + +
Sbjct: 13 GPPIISSTQTQHALHGEKGQIKCFIRSTPP--PD-RIAWSWKENVLESGTSGRYTVETIS 69
Query: 118 TADFGFVTLDLTEVYDRD-QGIYTCRAWNLAGETFTSTTIY 157
T + TL ++ + D Q IY C AWN G +
Sbjct: 70 TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
Score = 47.2 bits (112), Expect = 1e-06
Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR------TF 548
P I+ G+ + + PD + W + L G R +
Sbjct: 13 GPPIISSTQTQH-ALHGEKGQIKCFIRSTPPPDRIA-WSWKENVLESGTSGRYTVETIST 70
Query: 549 HDFGIVILDILYCYEE-NSGVYECRATNKYGSDVTKASLK 587
+ I L I +Y C A N +GSD LK
Sbjct: 71 EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
Score = 46.0 bits (109), Expect = 3e-06
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEAS----HRIRT 254
PP +S + GE P + + + +E+ + + T
Sbjct: 13 GPPIISSTQTQHA--LHGEKGQIKCFIRSTP---PPDRIAWSWKENVLESGTSGRYTVET 67
Query: 255 VHAFGMV--VLEILGTKIEDTG-VYTCRATNKWGQAEISVNLE 294
+ V L I D +Y C A N +G + L+
Sbjct: 68 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
Score = 46.0 bits (109), Expect = 3e-06
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEAS----HRIRT 743
PP +S + GE P + + + +E+ + + T
Sbjct: 13 GPPIISSTQTQHA--LHGEKGQIKCFIRSTP---PPDRIAWSWKENVLESGTSGRYTVET 67
Query: 744 VHAFGMV--VLEILGTKIEDTG-VYTCRATNKWGQAEISVNLE 783
+ V L I D +Y C A N +G + L+
Sbjct: 68 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
Score = 41.0 bits (96), Expect = 2e-04
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 601 PEVEWFYNGKKLPHGHRYR------TFHDFGIVILDILYCYEE-NSGVYECRATNKYGSD 653
+ W + L G R + + I L I +Y C A N +GSD
Sbjct: 44 DRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD 103
Query: 654 VTKASLK 660
LK
Sbjct: 104 TEIIRLK 110
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 57.7 bits (139), Expect = 1e-09
Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 15/121 (12%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
L++ K+EDTG Y + + K S L + Q S
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILR----QLRNIQVTNHSQLFQNMTCEL 127
Query: 323 HFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAW 382
H C++ D + W G + + + + D + +Y C A
Sbjct: 128 HLTCSVED-ADDNVSFRWEALGNTLSSQPNLTVSWD----------PRISSEQDYTCIAE 176
Query: 383 N 383
N
Sbjct: 177 N 177
Score = 45.7 bits (108), Expect = 1e-05
Identities = 23/184 (12%), Positives = 45/184 (24%), Gaps = 55/184 (29%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLP------------------HGHRYRTFHDF 551
G+S + + W +N L G R +
Sbjct: 12 LGESVTLPLEFPAGEKVNFIT-WLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSY 70
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLK---CVSKTNLILESQL-------- 600
+ + ++ E++G Y + + K + ++ +L+ + + SQL
Sbjct: 71 SLQLSNL---KMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCEL 127
Query: 601 ------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
W G L D + Y C A N
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPR----------ISSEQDYTCIAEN 177
Query: 649 KYGS 652
+
Sbjct: 178 AVSN 181
Score = 42.3 bits (99), Expect = 2e-04
Identities = 31/223 (13%), Positives = 60/223 (26%), Gaps = 65/223 (29%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLP------------------HGHRYR 619
G VT L ++ + W +N L G R
Sbjct: 13 GESVT---LPL----EFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLN 65
Query: 620 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQ 679
+ + + ++ E++G Y + + K + ++ +L+ +
Sbjct: 66 FTQSYSLQLSNL---KMEDTGSYRAQISTKTSAKLSSYTLRIL----------------- 105
Query: 680 PAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH 739
R Q T+ Q N H S + D ++ + G + +
Sbjct: 106 -------RQLRNIQVTNHSQLFQN--MTCELHLTCS-VEDADDNVSFRWEALGNTLSSQP 155
Query: 740 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ +I YTC A N SV+
Sbjct: 156 NLTV----------SWDPRISSEQDYTCIAENAVSNLSFSVSA 188
Score = 38.4 bits (89), Expect = 0.003
Identities = 33/217 (15%), Positives = 54/217 (24%), Gaps = 66/217 (30%)
Query: 92 PKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV---------------TLDLTEVYDRDQ 136
P + I W+FN L +T + V +L L+ + D
Sbjct: 23 PAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDT 82
Query: 137 GIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPD 196
G Y + +S T L ++ L
Sbjct: 83 GSYRAQISTKTSAKLSSYT---------------------LRILRQLRN----------- 110
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
Q T+ Q N H S + D ++ + G + + +
Sbjct: 111 ------IQVTNHSQLFQN--MTCELHLTCS-VEDADDNVSFRWEALGNTLSSQPNLTV-- 159
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+I YTC A N SV+
Sbjct: 160 --------SWDPRISSEQDYTCIAENAVSNLSFSVSA 188
Score = 36.5 bits (84), Expect = 0.017
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790
L++ K+EDTG Y + + K S L + +
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRN 110
Score = 36.1 bits (83), Expect = 0.022
Identities = 10/95 (10%), Positives = 24/95 (25%), Gaps = 22/95 (23%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPI------------------FHKNRVKMVSDFG 360
G+S + W N + R+ +
Sbjct: 13 GESVTLPLEFPAGEKVN-FITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
++ ++ D+G Y + K + T++
Sbjct: 72 LQ---LSNLKMEDTGSYRAQISTKTSAKLSSYTLR 103
Score = 33.8 bits (77), Expect = 0.13
Identities = 9/109 (8%), Positives = 19/109 (17%), Gaps = 14/109 (12%)
Query: 471 CELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVV 530
++ + + + H + ++
Sbjct: 87 AQISTKTSAKLSSYTLRILRQL---RNIQVTNHSQLFQNMTCELHLTCSVEDAD-DNVSF 142
Query: 531 EWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 579
W G L D + Y C A N +
Sbjct: 143 RWEALGNTLSSQPNLTVSWDPR----------ISSEQDYTCIAENAVSN 181
Score = 33.4 bits (76), Expect = 0.15
Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 11/73 (15%)
Query: 84 LHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143
LHL VE D N+ W G L +T+ + YTC A
Sbjct: 127 LHLTCSVE-DADDNVSFRWEALGNTLSSQPN---------LTVSWDPRIS-SEQDYTCIA 175
Query: 144 WNLAGETFTSTTI 156
N S +
Sbjct: 176 ENAVSNLSFSVSA 188
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 54.4 bits (131), Expect = 3e-09
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-----FHKNRVKMVS 357
PP+ H L K G+ A C P +EW+ G+ + ++ ++
Sbjct: 9 PPRIVEHPSDLIVSK-GEPATLNCKAEG--RPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 358 DFGFVVMDI--AYVQSHDSGEYVCRAWNKYGEDFTR 391
+ I D G YVC A N GE +
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101
Score = 52.5 bits (126), Expect = 1e-08
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP-----H 541
P+ + SD+ + +G+ A + P +EW+ G+++
Sbjct: 1 GSLRQEDFPPRIVEHPSDLI-VSKGEPATLNCKAEG--RPTPTIEWYKGGERVETDKDDP 57
Query: 542 GHRYRTFHDFGIVILDILYCY--EENSGVYECRATNKYGSDVTK-ASLK 587
+ L I++ + GVY C A N G V+ ASL+
Sbjct: 58 RSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE 106
Score = 47.1 bits (112), Expect = 1e-06
Identities = 28/126 (22%), Positives = 41/126 (32%), Gaps = 28/126 (22%)
Query: 198 EDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 255
++ PP+ L +S+GE A A G T T+E+ G+ +E
Sbjct: 5 QEDFPPRIVEHPSDLI-VSKGEPATLNCKAE----GRPTPTIEWYKGGERVETDKDDPRS 59
Query: 256 HAF-----GMVVLEIL--GTKIEDTGVYTCRATNKWGQ-----AEISVNLECVDKSKGQP 303
H + L I+ D GVY C A N G+ A + V
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA---------AA 110
Query: 304 PKFTSH 309
H
Sbjct: 111 AHHHHH 116
Score = 46.0 bits (109), Expect = 3e-06
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 601 PEVEWFYNGKKLP-----HGHRYRTFHDFGIVILDILYCY--EENSGVYECRATNKYGSD 653
P +EW+ G+++ + L I++ + GVY C A N G
Sbjct: 39 PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Query: 654 VTK-ASLK 660
V+ ASL+
Sbjct: 99 VSHDASLE 106
Score = 43.6 bits (103), Expect = 2e-05
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 687 EDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 744
++ PP+ L +S+GE A A G T T+E+ G+ +E
Sbjct: 5 QEDFPPRIVEHPSDLI-VSKGEPATLNCKAE----GRPTPTIEWYKGGERVETDKDDPRS 59
Query: 745 HAF-----GMVVLEIL--GTKIEDTGVYTCRATNKWGQA 776
H + L I+ D GVY C A N G+A
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 42.1 bits (99), Expect = 7e-05
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 10/102 (9%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL-----ELGSR 114
+ P + + + + +P L + E P IEW G+ + + S
Sbjct: 4 RQEDFPPRIVEHPS-DLIVSKGEPATLNCKAEG--RPTPTIEWYKGGERVETDKDDPRSH 60
Query: 115 FKTTADFGFVTLDLTEVYDR--DQGIYTCRAWNLAGETFTST 154
L + D+G+Y C A N GE +
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD 102
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 55.7 bits (134), Expect = 5e-09
Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 31/170 (18%)
Query: 231 GDQTMTVEFLYNGKPIEA----SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 286
+E+ NGK R+ G L I ED G Y R + +
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG--ALRIYNVSKEDRGDYYMRMLH-ETE 93
Query: 287 AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKP 346
+ + +E V + +P I + +A C + D ELK + +
Sbjct: 94 DQWKITME-VYEMVSKP-----MIYW-----ECSNATLTCEVLEGTDVELK--LYQGKEH 140
Query: 347 IFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396
+ + ++Y ++ + C+A N+ ++ + C
Sbjct: 141 LRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
Score = 47.6 bits (113), Expect = 3e-06
Identities = 30/190 (15%), Positives = 57/190 (30%), Gaps = 41/190 (21%)
Query: 501 QISDVTQLK--EGQSAHFEARLTPVTDPD----------LVVEWFYNGKKLPHGHRY--R 546
Q V + G + P+ ++E+F NGKK + R
Sbjct: 2 QDQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDR 61
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSD----------VTKASLKCVSKTNLIL 596
D L I +E+ G Y R ++ V+K + +N L
Sbjct: 62 VDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIY-WECSNATL 120
Query: 597 -----ESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
E E++ + + L + + Y + ++C+A N+
Sbjct: 121 TCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVS 169
Query: 652 SDVTKASLKC 661
+ + C
Sbjct: 170 QESEMEVVNC 179
Score = 41.8 bits (98), Expect = 3e-04
Identities = 13/113 (11%), Positives = 34/113 (30%), Gaps = 17/113 (15%)
Query: 49 AGKYQRQ---PSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN 105
G Y + + + V+ + KP E L +V +++++
Sbjct: 81 RGDYYMRMLHETEDQWKITMEVYEMVSKPMIYW-ECSNATLTCEVL--EGTDVELKLYQG 137
Query: 106 GKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYC 158
+ L + ++ + + + C+A N + + C
Sbjct: 138 KEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
Score = 37.9 bits (88), Expect = 0.005
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 93 KNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLT--EVYDRDQGIYTCRAWNLAGET 150
+E+ NGK S FK D L V D+G Y R + +
Sbjct: 36 HTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQ 95
Query: 151 FT 152
+
Sbjct: 96 WK 97
Score = 32.2 bits (73), Expect = 0.35
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 720 GDQTMTVEFLYNGKPIEA----SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775
+E+ NGK R+ G L I ED G Y R + +
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG--ALRIYNVSKEDRGDYYMRMLH-ETE 93
Query: 776 AEISVNL 782
+ + +
Sbjct: 94 DQWKITM 100
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 53.2 bits (127), Expect = 9e-09
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH---KNRVKMVSDFG 360
P+ T ++ + G F C+ +D + W + + + +N + + G
Sbjct: 11 PQITVQPETQSAIX-GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 361 FVVMD-----IAYVQSHDSGEYVCRAWNKYGEDFTR 391
++ + V+ G Y C N +G ++
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
Score = 42.4 bits (99), Expect = 4e-05
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 10/100 (10%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH------ 549
P+ Q + + G F +D + W + + L H
Sbjct: 11 PQITVQPETQSAIX-GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 550 --DFGIVILDILYCYEENSGVYECRATNKYGSDVTK-ASL 586
IL + + G Y+C +N +GS + A L
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109
Score = 40.1 bits (93), Expect = 3e-04
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 11/102 (10%)
Query: 61 ETFAKPVFIVPLKPEFKLGEA-QPLHLEAQVEPKNDPNLKIEWIFNGKPL---ELGSRFK 116
+ F P V PE + + +D + W + + L E+ +
Sbjct: 6 DDFPXPQITVQ--PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAH 63
Query: 117 TTADFGFV-----TLDLTEVYDRDQGIYTCRAWNLAGETFTS 153
A G + L L V +G Y C N G +++
Sbjct: 64 LRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
Score = 37.4 bits (86), Expect = 0.003
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
Query: 198 EDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 257
+D PQ T + + S + G F S D MT + + + ++ + H
Sbjct: 6 DDFPXPQITVQPETQSAIX-GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHL 64
Query: 258 --------FGMVVLEILGTKIEDTGVYTCRATNKWGQ-----AEISVN 292
+L + + G Y C +N +G A +++N
Sbjct: 65 RAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 37.4 bits (86), Expect = 0.003
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
Query: 687 EDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 746
+D PQ T + + S + G F S D MT + + + ++ + H
Sbjct: 6 DDFPXPQITVQPETQSAIX-GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHL 64
Query: 747 --------FGMVVLEILGTKIEDTGVYTCRATNKWGQ-----AEISVN 781
+L + + G Y C +N +G A +++N
Sbjct: 65 RAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 31.2 bits (70), Expect = 0.43
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 15/95 (15%)
Query: 574 TNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFH--------DFG 625
+ GSDV+ C + ++ W + + L H
Sbjct: 21 SAIXGSDVS---FTCSAASS---SDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEY 74
Query: 626 IVILDILYCYEENSGVYECRATNKYGSDVTK-ASL 659
IL + + G Y+C +N +GS + A L
Sbjct: 75 TTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 52.8 bits (126), Expect = 1e-08
Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 8/99 (8%)
Query: 316 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF--------GFVVMDIA 367
L G+ CT + + W + HK V + I
Sbjct: 20 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79
Query: 368 YVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDS 406
V D G Y C A + ++ K V S
Sbjct: 80 GVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGS 118
Score = 47.8 bits (113), Expect = 8e-07
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 66 PVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-------- 116
V + P E +GE L L + + + W + +
Sbjct: 9 DVVLSPSHGIELSVGE--KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66
Query: 117 TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ TL + V DQG+YTC A + ST +
Sbjct: 67 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 106
Score = 46.3 bits (109), Expect = 3e-06
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 8/107 (7%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-- 546
A P + S +L G+ + + W Y K H
Sbjct: 1 ADPGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 60
Query: 547 ------TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ + L I + G+Y C A++ + ++
Sbjct: 61 LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107
Score = 39.7 bits (92), Expect = 4e-04
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 8/92 (8%)
Query: 215 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR--------TVHAFGMVVLEIL 266
LS GE + + + + Y + + + + L I
Sbjct: 20 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79
Query: 267 GTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
G D G+YTC A++ + S + +K
Sbjct: 80 GVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111
Score = 39.3 bits (91), Expect = 7e-04
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 8/87 (9%)
Query: 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR--------TVHAFGMVVLEIL 755
LS GE + + + + Y + + + + L I
Sbjct: 20 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79
Query: 756 GTKIEDTGVYTCRATNKWGQAEISVNL 782
G D G+YTC A++ + S +
Sbjct: 80 GVTRSDQGLYTCAASSGLMTKKNSTFV 106
Score = 38.6 bits (89), Expect = 0.001
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYR--------TFHDFGIVILDILYC 634
K L C ++T L + + W Y K H + + L I
Sbjct: 25 KLVLNCTARTEL---NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 81
Query: 635 YEENSGVYECRATNKYGSDVTKASLK 660
+ G+Y C A++ + ++
Sbjct: 82 TRSDQGLYTCAASSGLMTKKNSTFVR 107
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 53.1 bits (127), Expect = 6e-08
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 14/140 (10%)
Query: 259 GMVVLEILGTKIEDTGVYTCRATNK-WGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLK 317
G L+I K++D GVY C + I+V + P + + L
Sbjct: 78 GNAALQITDVKLQDAGVYRCMISYGGADYKRITVKV--------NAPYNKINQRILVVDP 129
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIF---HKNRVKMVSDFGFVVMDIAYVQSHDS 374
C P+ +V W + + + F V + + +
Sbjct: 130 VTSEHELTCQAE--GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTN 187
Query: 375 GEYVCRAWNKYGEDFTRATI 394
+ C E+ A +
Sbjct: 188 EIFYCTFRRLDPEENHTAEL 207
Score = 39.2 bits (91), Expect = 0.002
Identities = 32/198 (16%), Positives = 58/198 (29%), Gaps = 55/198 (27%)
Query: 511 GQSAHFEARLTPVTDPD---LVVEW---------FYNGKKLPHGH----RYRT--FHDF- 551
G + E + D L+V W F +G++ R R D
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 552 --GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL--------- 600
G L I +++GVY C + G+D + ++K + N I + L
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILVVDPVTSEH 134
Query: 601 -----------PEVEWF-YNGKKLPHGHRYR-------TFHDFGIVILDILYCYEENSGV 641
EV W + + L F+ + ++ + +
Sbjct: 135 ELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRIN-----TTTNEI 189
Query: 642 YECRATNKYGSDVTKASL 659
+ C + A L
Sbjct: 190 FYCTFRRLDPEENHTAEL 207
Score = 31.5 bits (71), Expect = 0.89
Identities = 40/229 (17%), Positives = 72/229 (31%), Gaps = 59/229 (25%)
Query: 577 YGSDVTKASLKCVSKTNLILESQLPEVEW---------FYNGKKLPHGH----RYRT--F 621
YGS++T ++C L+ V W F +G++ R R
Sbjct: 15 YGSNMT---IECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71
Query: 622 HDF---GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRR 678
D G L I +++GVY C + G+D + ++K + N I + L
Sbjct: 72 KDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILVVDPV 130
Query: 679 -QPAGVPDSEDGRP-PQFT---SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK 733
+ +G P + S+ Q LS + + E L+N
Sbjct: 131 TSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTT-------------NSKREEKLFN-- 175
Query: 734 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ ++ RI T ++ C + + L
Sbjct: 176 -VTSTLRINT----------------TTNEIFYCTFRRLDPEENHTAEL 207
Score = 30.7 bits (69), Expect = 1.3
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 96 PNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLT---EVYDRDQGIYTCRAWNLAGETFT 152
P ++ W + + G T + ++T + I+ C L E
Sbjct: 144 PKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENH 203
Query: 153 STTI 156
+ +
Sbjct: 204 TAEL 207
Score = 30.7 bits (69), Expect = 1.4
Identities = 29/195 (14%), Positives = 48/195 (24%), Gaps = 48/195 (24%)
Query: 113 SRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPK 172
K G L +T+V +D G+Y C Y +
Sbjct: 69 RLLKDQLSLGNAALQITDVKLQDAGVYRCMI-------SYGGADYKRITVKVNAPYNKIN 121
Query: 173 GEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFT---SEFQHLSNLSEGEIAHFEASLIP 229
+ E L Q G P + S+ Q LS +
Sbjct: 122 QRILVVDPVTSEHELTCQAEGYP------KAEVIWTSSDHQVLSGKTTTT---------- 165
Query: 230 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 289
+ E L+N + ++ RI T ++ C +
Sbjct: 166 ---NSKREEKLFN---VTSTLRINT----------------TTNEIFYCTFRRLDPEENH 203
Query: 290 SVNLECVDKSKGQPP 304
+ L + PP
Sbjct: 204 TAELVIPELPLAHPP 218
Score = 30.4 bits (68), Expect = 2.1
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 748 GMVVLEILGTKIEDTGVYTCRATNK---WGQAEISVNLECVVWSPSQTKLVYS 797
G L+I K++D GVY C + + + + VN + +
Sbjct: 78 GNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPV 130
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 54.7 bits (132), Expect = 8e-08
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFH--KNRVKMVSD 358
+ + + +G + F C DP + W + R+ + D
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRAD--GDPPPAILWLSPRKHLVSAKSNGRLTVFPD 440
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
G +++ Y Q D+G Y+C A N G D A +
Sbjct: 441 -G--TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 45.9 bits (109), Expect = 4e-05
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHG--HRYRTFHD 550
+ + + + EG + F R DP + W + R F D
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRAD--GDPPPAILWLSPRKHLVSAKSNGRLTVFPD 440
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
G L++ Y +++G Y C A N G+D A L
Sbjct: 441 -GT--LEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 45.9 bits (109), Expect = 5e-05
Identities = 31/161 (19%), Positives = 48/161 (29%), Gaps = 31/161 (19%)
Query: 141 CR-AW---NLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPD 196
CR W F C+T E + + + +D + L P+
Sbjct: 336 CRLLWVFRRRWRLNFNRQQPTCATPEFVQGK-----------EFKDFPDVLL------PN 378
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVE-FLYNGKPIEASHRIR 253
R + + EG F A GD + + A R
Sbjct: 379 YFTCRRARIRDRKAQQVFVDEGHTVQFVCRAD----GDPPPAILWLSPRKHLVSAKSNGR 434
Query: 254 T-VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
V G LE+ +++D G Y C A N G + +L
Sbjct: 435 LTVFPDGT--LEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 45.5 bits (108), Expect = 5e-05
Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVE-FLYNGKPIEASHRIRT-VH 745
R + + EG F A GD + + A R V
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRAD----GDPPPAILWLSPRKHLVSAKSNGRLTVF 438
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
G LE+ +++D G Y C A N G + +L
Sbjct: 439 PDGT--LEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 44.7 bits (106), Expect = 1e-04
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 48 LAGKYQRQ---PSGPEE-TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWI 103
+ GK + P T + + + E + + + DP I W+
Sbjct: 363 VQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRAD--GDPPPAILWL 420
Query: 104 F-NGKPLELGSRFKTTADF-GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+ S + T G TL++ +D G Y C A N G ++
Sbjct: 421 SPRKHLVSAKSNGRLTVFPDG--TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
Score = 40.1 bits (94), Expect = 0.003
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 601 PEVEWFY-NGKKLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 657
P + W + R F D G L++ Y +++G Y C A N G+D A
Sbjct: 415 PAILWLSPRKHLVSAKSNGRLTVFPD-GT--LEVRYAQVQDNGTYLCIAANAGGNDSMPA 471
Query: 658 SL 659
L
Sbjct: 472 HL 473
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 50.0 bits (119), Expect = 9e-08
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 15/105 (14%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLT---PVNDPELKVEWFHN---------GKPIFHK 350
F + E + G S F + + P V+WF G+ +
Sbjct: 4 IGLFVMRPQDGE-VTVGGSITFSARVAGASLLKPPV--VKWFKGKWVDLSSKVGQHLQLH 60
Query: 351 NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ S + I Q +G Y C K D + +
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
Score = 49.6 bits (118), Expect = 1e-07
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
G+ ++ + L I + TG Y C + K + NL
Sbjct: 53 VGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
Score = 49.6 bits (118), Expect = 1e-07
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 731 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
G+ ++ + L I + TG Y C + K + NL
Sbjct: 53 VGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
Score = 48.5 bits (115), Expect = 4e-07
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 15/105 (14%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLT---PVTDPDLVVEWFYN---------GKKLPHG 542
F+ + D + G S F AR+ + P V+WF G+ L
Sbjct: 4 IGLFVMRPQDGE-VTVGGSITFSARVAGASLLKPPV--VKWFKGKWVDLSSKVGQHLQLH 60
Query: 543 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
Y + L I +G Y C + K D + +L
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
Score = 44.6 bits (105), Expect = 7e-06
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 14/92 (15%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYN---------GKKLPHGHRYRTFHDFGIVI 628
G +T + + P V+WF G+ L Y +
Sbjct: 19 GGSIT---FSA--RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73
Query: 629 LDILYCYEENSGVYECRATNKYGSDVTKASLK 660
L I +G Y C + K D + +L
Sbjct: 74 LHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
Score = 40.0 bits (93), Expect = 3e-04
Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 13/102 (12%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNL-KIEWIFNGKPLELGSR---------- 114
+F++ + ++ + A+V + ++W F GK ++L S+
Sbjct: 5 GLFVMRPQD-GEVTVGGSITFSARVAGASLLKPPVVKW-FKGKWVDLSSKVGQHLQLHDS 62
Query: 115 FKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ + L +T+ G Y C ++ +
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 54.4 bits (131), Expect = 9e-08
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 17/107 (15%)
Query: 292 NLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHK 350
C P L + G +A +C + V W NG + H
Sbjct: 336 YFTC------YAPVIVEPPADLNVTE-GMAAELKC---RASTSLTSVSWITPNGTVMTHG 385
Query: 351 ---NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
R+ ++SD G ++ V D+G Y C N G AT+
Sbjct: 386 AYKVRIAVLSD-G--TLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
Score = 50.1 bits (120), Expect = 2e-06
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGH---RYRTFH 549
AP + +D+ + EG +A + R + V W NG + HG R
Sbjct: 340 YAPVIVEPPADLN-VTEGMAAELKCR---ASTSLTSVSWITPNGTVMTHGAYKVRIAVLS 395
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
D G L+ +++G+Y C +N G+ A+L
Sbjct: 396 D-GT--LNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
Score = 44.7 bits (106), Expect = 8e-05
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 69 IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGS---RFKTTADFGFV 124
IV + + E L+ + + WI NG + G+ R +D G
Sbjct: 344 IVEPPADLNVTEGMAAELKCRAS---TSLTSVSWITPNGTVMTHGAYKVRIAVLSD-G-- 397
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
TL+ T V +D G+YTC N G T S T+
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
Score = 44.7 bits (106), Expect = 9e-05
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 10/122 (8%)
Query: 674 PELRRQP-AGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYN 731
P L+ + + + E N++EG A + +V N
Sbjct: 322 PNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCR---ASTSLTSVSWITPN 378
Query: 732 GKPI-EASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
G + ++++R V + G L ++DTG+YTC +N G S L V +
Sbjct: 379 GTVMTHGAYKVRIAVLSDGT--LNFTNVTVQDTGMYTCMVSNSVGNTTASATLN-VTGTH 435
Query: 790 SQ 791
Sbjct: 436 HH 437
Score = 42.8 bits (101), Expect = 4e-04
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYNGKPI-EASHRIR-TVHA 257
P L N++EG A + +V NG + ++++R V +
Sbjct: 340 YAPVIVEPPADL-NVTEGMAAELKCR---ASTSLTSVSWITPNGTVMTHGAYKVRIAVLS 395
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
G L ++DTG+YTC +N G S L V +
Sbjct: 396 DGT--LNFTNVTVQDTGMYTCMVSNSVGNTTASATLN-VTGTHHHHH 439
Score = 40.9 bits (96), Expect = 0.001
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 584 ASLKCVSKTNLILESQLPEVEWFY-NGKKLPHGH---RYRTFHDFGIVILDILYCYEENS 639
A LKC + + L V W NG + HG R D G L+ +++
Sbjct: 359 AELKCRA------STSLTSVSWITPNGTVMTHGAYKVRIAVLSD-GT--LNFTNVTVQDT 409
Query: 640 GVYECRATNKYGSDVTKASL 659
G+Y C +N G+ A+L
Sbjct: 410 GMYTCMVSNSVGNTTASATL 429
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 54.0 bits (130), Expect = 1e-07
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 18/107 (16%)
Query: 292 NLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHK 350
+ +C P + L + G A +C P V+W NG + H
Sbjct: 347 SFQC------SAPFIMDAPRDLNISE-GRMAELKCR----TPPMSSVKWLLPNGTVLSHA 395
Query: 351 ---NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
R+ +++D G ++ ++V D+G Y C N G A +
Sbjct: 396 SRHPRISVLND-G--TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
Score = 49.0 bits (117), Expect = 5e-06
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGH---RYRTFH 549
AP + D+ + EG+ A + R P++ V+W NG L H R +
Sbjct: 351 SAPFIMDAPRDLN-ISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLN 405
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
D G L+ + ++GVY C TN G+ A L
Sbjct: 406 D-GT--LNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
Score = 47.4 bits (113), Expect = 1e-05
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 69 IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRFKTTADFGFVTLD 127
I+ + + E + L+ + P + ++W+ NG L SR + TL+
Sbjct: 355 IMDAPRDLNISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 128 LTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ V D G+YTC N+AG + S +
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
Score = 42.8 bits (101), Expect = 4e-04
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 14/80 (17%)
Query: 584 ASLKCVSKTNLILESQLPEVEWFY-NGKKLPHGH---RYRTFHDFGIVILDILYCYEENS 639
A LKC + + V+W NG L H R +D G L+ + ++
Sbjct: 370 AELKCRT-------PPMSSVKWLLPNGTVLSHASRHPRISVLND-GT--LNFSHVLLSDT 419
Query: 640 GVYECRATNKYGSDVTKASL 659
GVY C TN G+ A L
Sbjct: 420 GVYTCMVTNVAGNSNASAYL 439
Score = 41.7 bits (98), Expect = 8e-04
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 9/122 (7%)
Query: 674 PELRRQP-AGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYN 731
+R + V + F + N+SEG +A + +V+ L N
Sbjct: 333 MHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCR----TPPMSSVKWLLPN 388
Query: 732 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791
G + + R + L + DTGVYTC TN G + S L S +
Sbjct: 389 GTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL---NVSTAG 445
Query: 792 TK 793
T
Sbjct: 446 TH 447
Score = 41.7 bits (98), Expect = 9e-04
Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 9/117 (7%)
Query: 194 VPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYNGKPIEASHRI 252
V + F + N+SEG +A + +V+ L NG + + R
Sbjct: 343 VDQASFQCSAPFIMDAPRDLNISEGRMAELKCR----TPPMSSVKWLLPNGTVLSHASRH 398
Query: 253 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSH 309
+ L + DTGVYTC TN G + S L V + H
Sbjct: 399 PRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN-VSTA---GTHHHHH 451
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 51.9 bits (124), Expect = 1e-07
Identities = 25/156 (16%), Positives = 46/156 (29%), Gaps = 6/156 (3%)
Query: 232 DQTMTVEFLYNGKPIEASHRIRT-VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
++ M + + I ++ RT + + IL + D G Y C A
Sbjct: 35 EKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKR 94
Query: 291 VNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHK 350
+L V S S S + + C+ + PE + W NG+ +
Sbjct: 95 EHLAEVTLSVKADFPTPSI--SDFEIPTSNIRRIICSTSGGF-PEPHLSWLENGEELNAI 151
Query: 351 NRVKMVSDFG--FVVMDIAYVQSHDSGEYVCRAWNK 384
N + V + ++C
Sbjct: 152 NTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYG 187
Score = 43.1 bits (101), Expect = 1e-04
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 20/120 (16%)
Query: 319 GDSAHFECTLTPVNDP--ELKVEWFHNGKPIFH------------KNRVKMVSDFGFVVM 364
+ A C + + ++ W K + KNR + +
Sbjct: 9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT-NNLSI 67
Query: 365 DIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQ 424
I ++ D G Y C + F R V L I + E
Sbjct: 68 VILALRPSDEGTYECVVLKYEKDAFKREH-----LAEVTLSVKADFPTPSISDFEIPTSN 122
Score = 31.1 bits (70), Expect = 1.0
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 721 DQTMTVEFLYNGKPIEASHRIRT-VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775
++ M + + I ++ RT + + IL + D G Y C
Sbjct: 35 EKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKD 90
Score = 29.2 bits (65), Expect = 3.7
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL--------ELGSRFKTTADF---GFVT 125
++ E L V + +I W K + + +K F ++
Sbjct: 7 EVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLS 66
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
+ + + D+G Y C + F
Sbjct: 67 IVILALRPSDEGTYECVVLKYEKDAFKREH 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 1e-07
Identities = 104/604 (17%), Positives = 174/604 (28%), Gaps = 250/604 (41%)
Query: 284 WGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHN 343
E + E V KF ++ SL ++ F+ L L + F N
Sbjct: 49 AADDEPTTPAELV-------GKFLGYVSSL--VEPSKVGQFDQVL------NLCLTEFEN 93
Query: 344 ----GKPIFHKNRVKMVSDFGFVVMDI-----AYVQSHDSGEYVCRAWNKYGED--FTRA 392
G I H K++ + ++ Y+ + + R ++K F
Sbjct: 94 CYLEGNDI-HALAAKLLQENDTTLVKTKELIKNYITARIMAK---RPFDKKSNSALFRAV 149
Query: 393 TIK------CFGKG-G---VYLDSLQ-----PESLARIRELENAQGQQPVAQAAPVAEAP 437
FG G G Y + L+ L + +L + +A
Sbjct: 150 GEGNAQLVAIFG-GQGNTDDYFEELRDLYQTYHVL--VGDLIKFSAETLSELIRTTLDAE 206
Query: 438 KFITQISDVTQ-LKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAP 496
K TQ ++ + L+ P PD ++ S P++ P
Sbjct: 207 KVFTQGLNILEWLEN-----------PSNTPD------KDYLLS---------IPIS-CP 239
Query: 497 KFITQISDVTQLKEGQSAHFE--AR---LTP-----------VTDPDLVV--------EW 532
I V QL AH+ A+ TP LV W
Sbjct: 240 -LIG----VIQL-----AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 533 FYNGKKLPHGHRYRTFHDFGIVILDILY-----CYE-------ENSGVYECRATNKYG-- 578
+F + +L+ CYE S + + N+ G
Sbjct: 290 -------------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE-GVP 335
Query: 579 ------SDVTKASLKC-VSKTNLILESQLPEVEWFY----NGKKLPHGHRYRTFHDFGIV 627
S++T+ ++ V+KTN S LP + NG + V
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTN----SHLPAGKQVEISLVNG--------AKNL-----V 378
Query: 628 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQ--PAG--- 682
+ SG SL ++ LR+ P+G
Sbjct: 379 V----------SG--------------PPQSLYGLNL----------TLRKAKAPSGLDQ 404
Query: 683 --VPDSEDGRPPQFTSEF---------QHLSN--------LSEGEIAHFEASL-IPVGDQ 722
+P SE R +F++ F L L + ++ + IPV D
Sbjct: 405 SRIPFSE--RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD- 461
Query: 723 TMT-----------VEFLYN---GKPI--EASHRIRTVHA--FG---MVVLEILGTKIED 761
T E + + P+ E + + + H FG L +L + +D
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 762 -TGV 764
TGV
Sbjct: 522 GTGV 525
Score = 50.0 bits (119), Expect = 4e-06
Identities = 94/611 (15%), Positives = 157/611 (25%), Gaps = 251/611 (41%)
Query: 68 FIVP---------LKPEFKLGEAQPL-HLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
+VP L+ +F +P A EP P EL +F
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT-------------PAELVGKF-- 64
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKE--SLIERTQHPKGEE 175
G+V+ + V G + + NL F + Y + +L + +
Sbjct: 65 ---LGYVS---SLVEPSKVGQFD-QVLNLCLTEFENC--YLEGNDIHALA-AKLLQENDT 114
Query: 176 GLEKIQDL-------EESLRRQPAGVPDS------EDGRPPQFT------------SEFQ 210
L K ++L +R +S +G E +
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 211 HLSNLSEGEIAHF----EASLIPVGDQTMTVEFLY-------------NGKP-------- 245
L + +L + T+ E ++ + P
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 246 ---------IEASHRIRTVHAFGMVVLEIL----GTKIEDTGVYT--------------- 277
I+ +H + T G E+ G G+ T
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 278 -------------CRATNKWGQAEISVNL--ECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
R + + ++ + ++ ++G P S + S+ L
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP----SPMLSISNLTQ---E 347
Query: 323 HFECTLTPVND--PE-------LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHD 373
+ + N P L NG KN VV
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISL-----VNG----AKN---------LVV---------- 379
Query: 374 SGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARI-RELENAQGQQPVAQA-A 431
SG P+SL + L A+ + Q+
Sbjct: 380 SGP--------------------------------PQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 432 PVAE-APKFITQISDVTQLKEGQSAHF-EARLTPVTD---PDLVCELFSNFFPSQGQQPV 486
P +E KF + V + F L P +D DLV S F Q PV
Sbjct: 408 PFSERKLKFSNRFLPVA-------SPFHSHLLVPASDLINKDLVKNNVS-FNAKDIQIPV 459
Query: 487 AQAAPVAEAPKFITQI-SDVTQLKEGQSAHFEARLTP--VTDPDLVVEWFYNGKKLPHGH 543
+ T SD+ L S R+ + P V+W
Sbjct: 460 -----------YDTFDGSDLRVL----SGSISERIVDCIIRLP---VKW-------ETTT 494
Query: 544 RYRTFH--DFG 552
+++ H DFG
Sbjct: 495 QFKATHILDFG 505
Score = 39.3 bits (91), Expect = 0.006
Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 50/140 (35%)
Query: 183 LEESLRRQ--PAG-----VPDSEDGRPPQFTSEF---------QHLSN--------LSEG 218
L +LR+ P+G +P SE R +F++ F L L +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSE--RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 219 EIAHFEASL-IPVGDQTMT-----------VEFLYN---GKPI--EASHRIRTVHA--FG 259
++ + IPV D T E + + P+ E + + + H FG
Sbjct: 447 NVSFNAKDIQIPVYD-TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 260 ---MVVLEILGTKIED-TGV 275
L +L + +D TGV
Sbjct: 506 PGGASGLGVLTHRNKDGTGV 525
Score = 37.0 bits (85), Expect = 0.028
Identities = 45/257 (17%), Positives = 74/257 (28%), Gaps = 95/257 (36%)
Query: 284 WGQAE--------ISVNLECVDKSKGQPPKFTSHIKSLEGLK--------------DGDS 321
W +A+ S+ L+ V P T H +G + DG
Sbjct: 1646 WNRADNHFKDTYGFSI-LDIV---INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG-K 1700
Query: 322 AHFECTLTPVNDPELKVEWFH-NGK--------P-IF--HKNRVKMVSDFGFVVMDIAYV 369
E +N+ + G P + K + + G + D A
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD-ATF 1759
Query: 370 QSHDS-GEY---VCRAWNKYG----ED-----FTRA-TIKC------FGKGGVYLDSLQP 409
H S GEY A E F R T++ G+ + ++ P
Sbjct: 1760 AGH-SLGEYAALASLA----DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 410 ---------ESLARIRE---------LE----NAQGQQPVA--QAAPVAEAPKFITQIS- 444
E+L + E +E N + QQ VA + + I
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL 1874
Query: 445 ---DVTQLKEGQSAHFE 458
D+ +L++ S E
Sbjct: 1875 QKIDIIELQK--SLSLE 1889
Score = 30.4 bits (68), Expect = 3.1
Identities = 40/256 (15%), Positives = 73/256 (28%), Gaps = 92/256 (35%)
Query: 345 KPIFHKNRVKMVSDFGFVVMDIAYVQS-------HDSGEYVCRAWNKY-------GEDFT 390
+ ++++ +GF ++DI V + H GE R Y D
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDI--VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 391 RATIKCFGKGGVYLDSL---------------QP----ESLARIRELENAQGQQPVAQA- 430
T K F + + S QP A +L+ ++G P
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK-SKGLIPADATF 1759
Query: 431 ---------APVAEAPKFITQISDVTQL---------------KEGQSAHFEARLTP--- 463
A + A ++ I + ++ + G+S + + P
Sbjct: 1760 AGHSLGEYAALASLA-DVMS-IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 464 ---VTDPDL--VCELFS----------NF-FPSQGQQPVA--QAAPVAEAPKFITQIS-- 503
+ L V E N+ QQ VA + + I
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVE--NQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 504 --DVTQLKEGQSAHFE 517
D+ +L++ S E
Sbjct: 1876 KIDIIELQK--SLSLE 1889
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 49.0 bits (117), Expect = 1e-07
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 10/104 (9%)
Query: 191 PAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH 250
P P +P T E Q ++ G F + T+ + S
Sbjct: 2 PLAAPS----KPIMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSR 56
Query: 251 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ +L I + D G Y C +N + + + L
Sbjct: 57 AMDFNG-----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
Score = 49.0 bits (117), Expect = 1e-07
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 10/104 (9%)
Query: 680 PAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH 739
P P +P T E Q ++ G F + T+ + S
Sbjct: 2 PLAAPS----KPIMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSR 56
Query: 740 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ +L I + D G Y C +N + + + L
Sbjct: 57 AMDFNG-----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
Score = 48.7 bits (116), Expect = 2e-07
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+P T + + ++ G F CT P + W +
Sbjct: 8 KPIMVTVEEQRSQSVRPGADVTFICTAKS-KSPAYTLVWTRLHNGKLPSRAMDFNG---- 62
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
++ I VQ D+G YVC N + D AT+
Sbjct: 63 -ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
Score = 44.4 bits (105), Expect = 8e-06
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 6/100 (6%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR 546
A A ++ + ++ G F P + W
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKS-KSPAYTLVWTRLHNGKLPSRA-- 57
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ + I ++ ++G Y C +N + D A+L
Sbjct: 58 MDFNGILTIRNV---QPSDAGTYVCTGSNMFAMDQGTATL 94
Score = 39.8 bits (93), Expect = 2e-04
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
G+DVT C +K+ +S + W + + I ++
Sbjct: 25 GADVT---FICTAKS----KSPAYTLVWTRLHNGKLPSRA--MDFNGILTIRNV---QPS 72
Query: 638 NSGVYECRATNKYGSDVTKASL 659
++G Y C +N + D A+L
Sbjct: 73 DAGTYVCTGSNMFAMDQGTATL 94
Score = 39.0 bits (91), Expect = 5e-04
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 64 AKPVFIVPLKPEFK-LGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+KP+ + + + + + + K+ P + W L SR
Sbjct: 7 SKPIMVTVEEQRSQSVRPGADVTFICTAKSKS-PAYTLVWTRLHNGK-LPSRAMDFNG-- 62
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + V D G Y C N+ + T+
Sbjct: 63 --ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 49.7 bits (118), Expect = 2e-07
Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 35/131 (26%)
Query: 298 KSKGQPPKFTSHIKSLEG----LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN-- 351
S+ +PPK + G+ + ++ DP V W
Sbjct: 8 SSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS--GDPAPTVIWQKAITQGNKAPAR 65
Query: 352 ---------------------------RVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNK 384
RV++ + + + + D G Y N
Sbjct: 66 PAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNP 125
Query: 385 YGEDFTRATIK 395
GED T+K
Sbjct: 126 VGEDQVNLTVK 136
Score = 49.7 bits (118), Expect = 3e-07
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 245 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
E R+R + + G + ED GVYT N G+ ++++ ++ +D
Sbjct: 87 LCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
Score = 48.2 bits (114), Expect = 7e-07
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 734 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
E R+R + + G + ED GVYT N G+ ++++ +
Sbjct: 87 LCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 135
Score = 45.1 bits (106), Expect = 8e-06
Identities = 21/132 (15%), Positives = 33/132 (25%), Gaps = 35/132 (26%)
Query: 489 AAPVAEAPKFI----TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH--- 541
+ E PK +I D + G + ++ DP V W +
Sbjct: 7 HSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS--GDPAPTVIWQKAITQGNKAPA 64
Query: 542 --------------------------GHRYRTFHDFGIVILDILYCYEENSGVYECRATN 575
R R I + +E+ GVY N
Sbjct: 65 RPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKN 124
Query: 576 KYGSDVTKASLK 587
G D ++K
Sbjct: 125 PVGEDQVNLTVK 136
Score = 37.4 bits (86), Expect = 0.004
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 79 GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL-ELGSRFKTTADFGFVTLDLTEVYDRDQG 137
+ + D EW+F+ K L E R + + D+G
Sbjct: 57 TQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEG 116
Query: 138 IYTCRAWNLAGETFTSTTI 156
+YT N GE + T+
Sbjct: 117 VYTVTVKNPVGEDQVNLTV 135
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 47.9 bits (113), Expect = 6e-06
Identities = 16/137 (11%), Positives = 34/137 (24%), Gaps = 9/137 (6%)
Query: 253 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKS 312
+ + G + +++ C + GQ+ L P+
Sbjct: 40 KELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVY-----WTPERVELAPL 94
Query: 313 LEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQS 371
G + C + L V K + + V ++ V + +
Sbjct: 95 PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE---VTTTVLVRRD 151
Query: 372 HDSGEYVCRAWNKYGED 388
H + CR
Sbjct: 152 HHGANFSCRTELDLRPQ 168
Score = 39.8 bits (92), Expect = 0.002
Identities = 22/172 (12%), Positives = 42/172 (24%), Gaps = 20/172 (11%)
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+TV L K + R V V +L + ++CR + +
Sbjct: 117 ANLTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL- 172
Query: 293 LECVDKSK----GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPI 347
E P + S L+ C+L + E +V + +
Sbjct: 173 FENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL 232
Query: 348 -----FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + + D + C T T+
Sbjct: 233 NPTVTYGNDSFSAKASVSVTAED------EGTQRLTCAVILGNQSQETLQTV 278
Score = 35.6 bits (81), Expect = 0.053
Identities = 32/319 (10%), Positives = 68/319 (21%), Gaps = 67/319 (21%)
Query: 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENS 566
L G S + L +E K+L G+ + + + ++ +
Sbjct: 11 LPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYE-----LSNV-----QED 60
Query: 567 GVYECRATNKYGSDVTKAS--------------------------LKCVSKTNLILESQL 600
C + G K L+C + +
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN-- 118
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
V K+L R + V +L + + + CR L
Sbjct: 119 LTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ--GLELF 173
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIP 718
+ L++ + P + L +
Sbjct: 174 ENTSAPYQLQTFVL-----------------PATPPQLVSPRVLEVDTQGTVVCSLDGLF 216
Query: 719 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
+ L + + + T + ED G G
Sbjct: 217 PVSEAQVHLALGDQRL----NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ 272
Query: 779 SVNLECVVWSPSQTKLVYS 797
++S ++ +
Sbjct: 273 ETLQTVTIYSFPAPNVILT 291
Score = 34.8 bits (79), Expect = 0.079
Identities = 33/255 (12%), Positives = 58/255 (22%), Gaps = 49/255 (19%)
Query: 46 HALAGKYQRQPSGPEETFAKP--VFIVPLKPEFKLGEAQPLHLEAQVE-PKNDPNLKIEW 102
++ Q + P V + PL +G+ L L QVE NL +
Sbjct: 66 YSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK--NLTLRCQVEGGAPRANLTVVL 123
Query: 103 IFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKE 162
+ K L+ A+ VT + D ++CR ++ +T
Sbjct: 124 LRGEKELKREPAVGEPAE---VTTTVLVRRDHHGANFSCRTELDLRP--QGLELFENTSA 178
Query: 163 SLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 222
+T P + L
Sbjct: 179 PYQLQTFV-------------------------------LPATPPQLVSPRVLEVDTQGT 207
Query: 223 F--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY--TC 278
+ + L + + + T + ED G TC
Sbjct: 208 VVCSLDGLFPVSEAQVHLALGDQRL----NPTVTYGNDSFSAKASVSVTAEDEGTQRLTC 263
Query: 279 RATNKWGQAEISVNL 293
E +
Sbjct: 264 AVILGNQSQETLQTV 278
Score = 34.4 bits (78), Expect = 0.12
Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 10/117 (8%)
Query: 466 DPDLVCELFSNFFPSQGQQPVAQAA-PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT 524
D +C + Q A+ V P+ + + G++ ++
Sbjct: 60 DSQPMC-----YSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGA 114
Query: 525 -DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 580
+L V K+L R + V +L + + + CR
Sbjct: 115 PRANLTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ 168
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 47.1 bits (111), Expect = 6e-06
Identities = 29/138 (21%), Positives = 43/138 (31%), Gaps = 18/138 (13%)
Query: 263 LEILGTKIEDTGVYTCRATN----KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
L I ++EDTG Y R K+ + +NLE V +P I LE L+
Sbjct: 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLE-VTALIEKPD-----IHFLEPLES 137
Query: 319 GDSAHFECTL--TPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGE 376
G C+L + P L W N S+
Sbjct: 138 GRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLD-PETTRSSELTLTP-----RPEDHGTN 191
Query: 377 YVCRAWNKYGEDFTRATI 394
C+ + + T T+
Sbjct: 192 LTCQMKRQGAQVTTERTV 209
Score = 34.0 bits (77), Expect = 0.13
Identities = 29/204 (14%), Positives = 52/204 (25%), Gaps = 53/204 (25%)
Query: 94 NDPNLKIEWIFNGKPLELGSRFKTTADF--GFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151
N+P+ +++ G RF+ D +L + + D G Y R +
Sbjct: 57 NNPDRRVKPETQG-------RFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKY 109
Query: 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
+ Y K +L +
Sbjct: 110 S----YQQNKLNLEV----------------------------------TALIEKPDIHF 131
Query: 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 271
L L G SL + + F + G + T + L + +
Sbjct: 132 LEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSS----ELTLTPRPED 187
Query: 272 DTGVYTCRATNKWGQ--AEISVNL 293
TC+ + Q E +V L
Sbjct: 188 HGTNLTCQMKRQGAQVTTERTVQL 211
Score = 31.3 bits (70), Expect = 0.83
Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 8/94 (8%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVE--PKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+ + L +P L + + P L W N L T
Sbjct: 123 LIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA----LSPLDPETTRSSE 178
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+TL TC+ + T T+
Sbjct: 179 LTLTPRPEDHG--TNLTCQMKRQGAQVTTERTVQ 210
Score = 31.0 bits (69), Expect = 1.0
Identities = 35/228 (15%), Positives = 56/228 (24%), Gaps = 54/228 (23%)
Query: 578 GSDVTKASLKCV--SKTNLILESQLPEVEWFYNGKKLPHG-----------------HRY 618
G V + C S V WF +G+ + R+
Sbjct: 15 GLCVL---VPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRF 71
Query: 619 RTFHDF--GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEL 676
R D L I E++G Y R + +K NL +
Sbjct: 72 RLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQ----NKLNLEV------- 120
Query: 677 RRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIE 736
+ L L G SL + + F + G +
Sbjct: 121 -------------TALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS 167
Query: 737 ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ--AEISVNL 782
T + L + + TC+ + Q E +V L
Sbjct: 168 PLDPETTRSS----ELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 48.3 bits (115), Expect = 7e-06
Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 11/132 (8%)
Query: 272 DTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT-- 329
T Y C +K ++ +E + P F K + L + C +
Sbjct: 291 GTQTYICNVNHKPSNTKVDKRVEPLS----LPSVFLFPPKPKDTLMISRTPEVTCVVVDV 346
Query: 330 PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV-----VMDIAYVQSHDSGEYVCRAWNK 384
DP++K W+ +G + + + V+ + + D EY C+ NK
Sbjct: 347 SHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNK 406
Query: 385 YGEDFTRATIKC 396
TI
Sbjct: 407 ALPAPIEKTISK 418
Score = 35.2 bits (81), Expect = 0.095
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 11/123 (8%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHAFG-----MVVLEILGTKIEDTGVYTCRATNKWG 285
D + + +G + + + + VL +L D Y C+ +NK
Sbjct: 349 EDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKAL 408
Query: 286 QAEISVNLECVDKSKGQP--PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHN 343
A I + K+KGQP P+ + S E + + C + ++ VEW N
Sbjct: 409 PAPIEKT---ISKAKGQPREPQVYTLPPSREEMT-KNQVSLTCLVKGFYPSDIAVEWESN 464
Query: 344 GKP 346
G+P
Sbjct: 465 GQP 467
Score = 31.7 bits (72), Expect = 1.1
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEI---SVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
L I G + ED Y C + N + + + + + K P S E
Sbjct: 72 LAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEEL--QA 129
Query: 320 DSAHFECTLTPVND--PE-LKVEWFHNGKPI 347
+ A C ++D P + V W +G P+
Sbjct: 130 NKATLVCL---ISDFYPGAVTVAWKADGSPV 157
Score = 29.0 bits (65), Expect = 6.7
Identities = 18/123 (14%), Positives = 31/123 (25%), Gaps = 5/123 (4%)
Query: 43 EVEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEW 102
V H + + P + +F K + + DP +K W
Sbjct: 298 NVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNW 357
Query: 103 IFNGKPLELGSRFKTTADFGFV-----TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+G + + L + D Y C+ N A TI
Sbjct: 358 YVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTIS 417
Query: 158 CST 160
+
Sbjct: 418 KAK 420
Score = 28.7 bits (64), Expect = 9.6
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 271 EDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTP 330
+ Y+C+ T++ E +V S + P S + G +A C +
Sbjct: 188 KSHRSYSCQVTHEGSTVEKTVAPTECSAST-KGPSVFPLAPSSKST-SGGTAALGCLVKD 245
Query: 331 VNDPELKVEWFHNGKPI 347
+ V W N +
Sbjct: 246 YFPQPVTVSW--NSGAL 260
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 44.6 bits (105), Expect = 8e-06
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI----------FHKNR 352
+ + ++ ++ + DG+ A F L+ ++ WF NG+ + R
Sbjct: 8 TARLVAGLEDVQ-VYDGEDAVFSLDLST----IIQGTWFLNGEELKSNEPEGQVEPGALR 62
Query: 353 VKMVSDFGFVVMDIAYVQSHDSGEYVC 379
++ + + V+ DSG V
Sbjct: 63 YRIEQKGLQHRLILHAVKHQDSGALVG 89
Score = 43.8 bits (103), Expect = 2e-05
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 18/108 (16%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL--------- 539
++ + + + + DV + +G+ A F L+ + WF NG++L
Sbjct: 2 SSGSSGTARLVAGLEDVQ-VYDGEDAVFSLDLST----IIQGTWFLNGEELKSNEPEGQV 56
Query: 540 -PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
P RYR L + ++SG A+L
Sbjct: 57 EPGALRYRIEQKGLQHRLILHAVKHQDSGAL---VGFSCPGVQDSAAL 101
Score = 30.7 bits (69), Expect = 0.59
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 13/72 (18%)
Query: 598 SQLPEVEWFYNGKKL----------PHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
S + + WF NG++L P RYR L + ++SG
Sbjct: 33 STIIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGAL---VG 89
Query: 648 NKYGSDVTKASL 659
A+L
Sbjct: 90 FSCPGVQDSAAL 101
Score = 30.7 bits (69), Expect = 0.60
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 20/103 (19%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS---------- 249
+ L ++ +GE A F L + + NG+ ++++
Sbjct: 8 TARLV---AGLEDVQVYDGEDAVFSLDL----STIIQGTWFLNGEELKSNEPEGQVEPGA 60
Query: 250 HRIRTVHAFGMVVLEILGTKIEDTGVY-TCRATNKWGQAEISV 291
R R L + K +D+G A +++
Sbjct: 61 LRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAALTI 103
Score = 30.7 bits (69), Expect = 0.60
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 20/103 (19%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS---------- 738
+ L ++ +GE A F L + + NG+ ++++
Sbjct: 8 TARLV---AGLEDVQVYDGEDAVFSLDL----STIIQGTWFLNGEELKSNEPEGQVEPGA 60
Query: 739 HRIRTVHAFGMVVLEILGTKIEDTGVY-TCRATNKWGQAEISV 780
R R L + K +D+G A +++
Sbjct: 61 LRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAALTI 103
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 48.2 bits (114), Expect = 9e-06
Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 3/132 (2%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
L I V T+ ++++ V I+++E + G A
Sbjct: 125 LAISTFWPNFYQVIFEVITSGHQ-GYLAIDEVKVLGHPCTRTPHFLRIQNVE-VNAGQFA 182
Query: 323 HFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM-DIAYVQSHDSGEYVCRA 381
F+C+ ++ +K+ S F+ ++ D+G+Y C
Sbjct: 183 TFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI 242
Query: 382 WNKYGEDFTRAT 393
+ G +
Sbjct: 243 RTEGGVGISNYA 254
Score = 42.1 bits (98), Expect = 8e-04
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL---PHGHRYRTFHDFGIVILDILYCY 562
++ GQ A F+ + + G + P T I +++
Sbjct: 174 VEVNAGQFATFQCS--AIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTT 231
Query: 563 EENSGVYECRATNKYGSDVTKASLKCV 589
+ ++G Y C + G ++ + V
Sbjct: 232 KRDAGKYRCMIRTEGGVGISNYAELVV 258
Score = 42.1 bits (98), Expect = 8e-04
Identities = 19/165 (11%), Positives = 39/165 (23%), Gaps = 36/165 (21%)
Query: 525 DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
P W +G +R L I + V T+ + +
Sbjct: 103 GPLGNPIWNISGDPTRTWNRAE---------LAISTFWPNFYQVIFEVITSGHQGYLAID 153
Query: 585 SLKCVSKTNLILESQL------------------------PEVEWFYNGKKL---PHGHR 617
+K + L + G + P
Sbjct: 154 EVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI 213
Query: 618 YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 662
T I +++ + ++G Y C + G ++ + V
Sbjct: 214 KVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
Score = 40.9 bits (95), Expect = 0.002
Identities = 23/189 (12%), Positives = 40/189 (21%), Gaps = 38/189 (20%)
Query: 600 LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
L W +G +R L I + V T+ + + +
Sbjct: 105 LGNPIWNISGDPTRTWNRAE---------LAISTFWPNFYQVIFEVITSGHQGYLAIDEV 155
Query: 660 KCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV 719
K + P T F + N+ +
Sbjct: 156 KVLG--------------------------HPCTRTPHFLRIQNVEVNAGQFATFQCSAI 189
Query: 720 GDQTMTVEFLYNGKPIE---ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
G G + T + ++ T D G Y C + G
Sbjct: 190 GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 249
Query: 777 EISVNLECV 785
+ V
Sbjct: 250 ISNYAELVV 258
Score = 37.8 bits (87), Expect = 0.014
Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 3/94 (3%)
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
P F+ E G+ A ++ K T+
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTV--AGDRLWLQGIDVRDAPLKEIKVTSSRR 220
Query: 123 FVT-LDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
F+ ++ RD G Y C G ++
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYA 254
Score = 37.5 bits (86), Expect = 0.022
Identities = 10/77 (12%), Positives = 18/77 (23%), Gaps = 3/77 (3%)
Query: 230 VGDQTMTVEFLYNGKPIE---ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 286
+G G + T + ++ T D G Y C + G
Sbjct: 189 IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGV 248
Query: 287 AEISVNLECVDKSKGQP 303
+ V +
Sbjct: 249 GISNYAELVVKEPPVPI 265
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 47.5 bits (113), Expect = 1e-05
Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 26/145 (17%)
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKK 611
I LD C E E G +T ++C +K + +V + ++
Sbjct: 239 NIFSLDFFNCSEYK----ESAWEAHLGDTLT---IRCDTKQQ-----GMTKVWVSPSNEQ 286
Query: 612 LPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL 669
+ + + + + + E+ GVY C A + ++ LK V
Sbjct: 287 VLSQGSNGSVSVRNGDLFFKKVQ---VEDGGVYTCYAMGETFNETLSVELK-V------- 335
Query: 670 ESQLPELRRQPAGVPDSEDGRPPQF 694
++ PQF
Sbjct: 336 -YNFTLHGHHDTLNAAADPWSHPQF 359
Score = 44.8 bits (106), Expect = 7e-05
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 11/81 (13%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD----IAYVQSHDS 374
GD+ C KV + + + + S+ V + VQ D
Sbjct: 261 GDTLTIRCDTKQ--QGMTKVWVSPSNEQVLSQG-----SNGSVSVRNGDLFFKKVQVEDG 313
Query: 375 GEYVCRAWNKYGEDFTRATIK 395
G Y C A + + +K
Sbjct: 314 GVYTCYAMGETFNETLSVELK 334
Score = 42.5 bits (100), Expect = 4e-04
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 231 GDQTMTVEFLYNGKPIEA-SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 289
V + + + + G L ++ED GVYTC A + +
Sbjct: 272 QQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD--LFFKKVQVEDGGVYTCYAMGETFNETL 329
Query: 290 SVNL 293
SV L
Sbjct: 330 SVEL 333
Score = 42.5 bits (100), Expect = 4e-04
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 720 GDQTMTVEFLYNGKPIEA-SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
V + + + + G L ++ED GVYTC A + +
Sbjct: 272 QQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD--LFFKKVQVEDGGVYTCYAMGETFNETL 329
Query: 779 SVNL 782
SV L
Sbjct: 330 SVEL 333
Score = 41.4 bits (97), Expect = 0.001
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
Query: 70 VPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTADFGFVTLD 127
E LG+ + + + K+ + + + + + G L
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQ----QGMTKVWVSPSNEQVLSQGSNGSVSVRN-G--DLF 304
Query: 128 LTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+V D G+YTC A S +
Sbjct: 305 FKKVQVEDGGVYTCYAMGETFNETLSVEL 333
Score = 41.0 bits (96), Expect = 0.001
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 7/80 (8%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENSG 567
G + V + +++ + + + + + E+ G
Sbjct: 260 LGDTLTIRCDTK--QQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQ---VEDGG 314
Query: 568 VYECRATNKYGSDVTKASLK 587
VY C A + ++ LK
Sbjct: 315 VYTCYAMGETFNETLSVELK 334
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 46.7 bits (110), Expect = 1e-05
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 17/140 (12%)
Query: 263 LEILGTKIEDTGVYTCRA-TNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
L + ++ D Y C G AE + L +K + + + + +L ++D
Sbjct: 79 LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF--AKPEATEVSPNKGTLSVMEDSAQ 136
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD-------------IAY 368
C N P K+ W+ NG+ + + + +
Sbjct: 137 EIATCNSRNGN-PAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRL 195
Query: 369 VQSHDSGEYVCRAWNKYGED 388
+ + C A E
Sbjct: 196 RKDDRDASFHCAAHYSLPEG 215
Score = 32.1 bits (72), Expect = 0.49
Identities = 15/95 (15%), Positives = 23/95 (24%), Gaps = 21/95 (22%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKP----------------IFHKNRVKMVSDFGFV 362
G S +CT T +EWF + + + S +
Sbjct: 15 GKSVILDCTPTG-THDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 363 VMD----IAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
+A Q D +YVC
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATA 108
Score = 32.1 bits (72), Expect = 0.53
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 752 LEILGTKIEDTGVYTCRA-TNKWGQAEISVNLECVVWSPSQTKLV 795
L + ++ D Y C G AE + L V P T++
Sbjct: 79 LVLAEAQVGDERDYVCVVRAGAAGTAEATARLN-VFAKPEATEVS 122
Score = 30.9 bits (69), Expect = 1.4
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
L L E D+ Y C A T +T
Sbjct: 78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATA 108
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 44.6 bits (105), Expect = 1e-05
Identities = 11/89 (12%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 363
T+H +++ +++G + +C + ++W N ++ + + +
Sbjct: 2 GSLTNHTETIT-VEEGQTLTLKCVTS--LRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQL 58
Query: 364 MD---------IAYVQSHDSGEYVCRAWN 383
+ + V D G Y C ++
Sbjct: 59 LHHSANQLSITVPNVTLQDEGVYKCLHYS 87
Score = 40.0 bits (93), Expect = 4e-04
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 240 LYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
N P+ + + + +H + + + + ++D GVY C + V + +
Sbjct: 44 FLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVS-TKEVKVIVLAT 102
Query: 299 SKGQPPKFTSHIKSLE 314
KG+ ++ SH + LE
Sbjct: 103 MKGEFCRYPSHWRPLE 118
Score = 36.1 bits (83), Expect = 0.008
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW--------FYNGKKLPHGHRYRT 547
+T ++EGQ+ + + + ++W F N + +Y+
Sbjct: 2 GSLTNHTETIT-VEEGQTLTLKCVTSL--RKNSSLQWLTPSGFTIFLNEYPVLKNSKYQL 58
Query: 548 FH-DFGIVILDILYCYEENSGVYECRATN 575
H + + + ++ GVY+C +
Sbjct: 59 LHHSANQLSITVPNVTLQDEGVYKCLHYS 87
Score = 36.1 bits (83), Expect = 0.009
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 729 LYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVW 787
N P+ + + + +H + + + + ++D GVY C + V + V+
Sbjct: 44 FLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVS-TKEVKVI-VLA 101
Query: 788 SPSQTKLVYSLFEVP 802
+ Y P
Sbjct: 102 TMKGEFCRYPSHWRP 116
Score = 35.7 bits (82), Expect = 0.014
Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 93 KNDPNLKIEWI--------FNGKPLELGSRFK-TTADFGFVTLDLTEVYDRDQGIYTCRA 143
N ++W+ N P+ S+++ +++ + V +D+G+Y C
Sbjct: 26 SLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLH 85
Query: 144 WNLAGETFTST 154
++ + T
Sbjct: 86 YSDSVSTKEVK 96
Score = 30.0 bits (67), Expect = 1.4
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 14/74 (18%)
Query: 584 ASLKCVSKTNLILESQLPEVEW--------FYNGKKLPHGHRYRTFH-DFGIVILDILYC 634
+LKCV + ++W F N + +Y+ H + + +
Sbjct: 19 LTLKCV-----TSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNV 73
Query: 635 YEENSGVYECRATN 648
++ GVY+C +
Sbjct: 74 TLQDEGVYKCLHYS 87
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 46.2 bits (109), Expect = 1e-05
Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 11/138 (7%)
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
G L I D+G Y C + + V L + S +
Sbjct: 81 GKAALRIHNVTASDSGKYLCYFQDGDFYEKALVEL--------KVAALGSDLHVDVKGYK 132
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG--FVVMDIAYVQSHDSGE 376
H EC + P+ +++W +N +V+D + V ++
Sbjct: 133 DGGIHLECR-STGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEG 191
Query: 377 YVCRAWNKYGEDFTRATI 394
C + A+I
Sbjct: 192 VSCTIRSSLLGLEKTASI 209
Score = 42.0 bits (98), Expect = 4e-04
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 21/87 (24%)
Query: 319 GDSAHFECTLTPVNDPE-LKVEWFHNGKPIF-----------------HKNRVKMVSDF- 359
G+ A C L P E ++++W + ++ R ++ D
Sbjct: 19 GEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGI 78
Query: 360 --GFVVMDIAYVQSHDSGEYVCRAWNK 384
G + I V + DSG+Y+C +
Sbjct: 79 TAGKAALRIHNVTASDSGKYLCYFQDG 105
Score = 37.0 bits (85), Expect = 0.013
Identities = 26/191 (13%), Positives = 51/191 (26%), Gaps = 42/191 (21%)
Query: 511 GQSAHFEARLTPVTDP-DLVVEWF-----------YNGKKLP------HGHRYRTFHDF- 551
G+ A L P + ++W +GK++ + R D
Sbjct: 19 GEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGI 78
Query: 552 --GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL--------- 600
G L I +SG Y C + + LK + + +
Sbjct: 79 TAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHL 138
Query: 601 ----------PEVEWF-YNGKKLPHGHRYRTFHDFGIV-ILDILYCYEENSGVYECRATN 648
P+++W G+ +P G+ + + + C +
Sbjct: 139 ECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRS 198
Query: 649 KYGSDVTKASL 659
AS+
Sbjct: 199 SLLGLEKTASI 209
Score = 29.7 bits (66), Expect = 3.6
Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 6/78 (7%)
Query: 96 PNLKIEWI---FNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152
P +I+W P V + + +C +
Sbjct: 147 PQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVI-MRGSSGEGVSCTIRSSLLGLEK 205
Query: 153 STTIYCSTKESLIERTQH 170
+ +I + + QH
Sbjct: 206 TASISIA--DPFFRSAQH 221
Score = 28.9 bits (64), Expect = 5.9
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
G L I D+G Y C + + V L
Sbjct: 81 GKAALRIHNVTASDSGKYLCYFQDGDFYEKALVEL 115
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 45.1 bits (106), Expect = 4e-05
Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 16/162 (9%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHAF-----GMVVLEILGTKIEDTGVYTCR-ATNKW 284
+M V G S R+ V A L + G ++ED G YTC T
Sbjct: 43 ESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQ 102
Query: 285 GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNG 344
G + + L + P+ T+ ++ ++ L C T P ++ W +
Sbjct: 103 GSRSVDIWLRVLA-----KPQNTAEVQKVQ-LTGEPVPMARCVSTGGR-PPAQITWHSDL 155
Query: 345 KPIFHKNRVKMVSDFGFVVMDIAYV---QSHDSGEYVCRAWN 383
+ ++V V + + D + C+ +
Sbjct: 156 GGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEH 197
Score = 34.3 bits (78), Expect = 0.11
Identities = 36/229 (15%), Positives = 67/229 (29%), Gaps = 58/229 (25%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYN-------------GKKLPHGHRYR----- 619
G VT L C + + + + ++ W + G R
Sbjct: 14 GDSVT---LPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAAR 70
Query: 620 ---TFHDFGIVILDILYCYEENSGVYECR-ATNKYGSDVTKASLKCVSKTNLILESQLPE 675
D + + + E+ G Y C T GS L+ ++K E Q +
Sbjct: 71 LGAELRDASLRMFGLR---VEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ 127
Query: 676 LRRQPAGVP--DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK 733
L +P + S GRPP ++ S+ + + T+TV L+
Sbjct: 128 LTGEPVPMARCVSTGGRPP------AQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILV 181
Query: 734 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
P + D TC+ ++ + + +
Sbjct: 182 P----------------------SSQVDGKQVTCKVEHESFEKPQLLTV 208
Score = 30.8 bits (69), Expect = 1.2
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 720 GDQTMTVEFLYNGKPIEASHRIRTVHAF-----GMVVLEILGTKIEDTGVYTCR-ATNKW 773
+M V G S R+ V A L + G ++ED G YTC T
Sbjct: 43 ESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQ 102
Query: 774 GQAEISVNLECVVWSPSQT 792
G + + L + P T
Sbjct: 103 GSRSVDIWLRVLA-KPQNT 120
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 42.5 bits (100), Expect = 4e-05
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD---------IAYV 369
G +A C + + ++W + + + + K + D ++ ++ V
Sbjct: 21 GGTAILTCRVD--QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDV 78
Query: 370 QSHDSGEYVC 379
D G+Y C
Sbjct: 79 SLSDEGQYTC 88
Score = 31.8 bits (72), Expect = 0.21
Identities = 10/87 (11%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
+ + ++ + EG +A R+ + + ++W ++ + + D I
Sbjct: 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQ--NDNTSLQWSNPAQQTLYFDDKKALRDNRI 61
Query: 554 VI---------LDILYCYEENSGVYEC 571
+ + + + G Y C
Sbjct: 62 ELVRASWHELSISVSDVSLSDEGQYTC 88
Score = 31.4 bits (71), Expect = 0.35
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 728 FLYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786
++ K +RI V ++ + + + + D G YTC L +
Sbjct: 48 LYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTM-PVKTSKAYLTVLG 106
Score = 30.6 bits (69), Expect = 0.59
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 239 FLYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTC 278
++ K +RI V ++ + + + + D G YTC
Sbjct: 48 LYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTC 88
Score = 29.4 bits (66), Expect = 1.5
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 93 KNDPNLKIEWIFNGKPLELGSRFKTTADFGFV---------TLDLTEVYDRDQGIYTC 141
+ N ++W + K D ++ +++V D+G YTC
Sbjct: 31 DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTC 88
Score = 28.3 bits (63), Expect = 3.6
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 14/70 (20%)
Query: 584 ASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVI---------LDILYC 634
A L C + ++ ++W ++ + + D I + + +
Sbjct: 24 AILTCR-----VDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDV 78
Query: 635 YEENSGVYEC 644
+ G Y C
Sbjct: 79 SLSDEGQYTC 88
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 41.8 bits (98), Expect = 8e-05
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPI--FH-----------KNRVKMVSDFGFVVMD 365
G S +C L+ +V W + + + K+RV G +
Sbjct: 18 GGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQS 77
Query: 366 IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ +D+GEY C ++ Y + I
Sbjct: 78 ---LTVNDTGEYFCI-YHTYPDGTYTGRIF 103
Score = 33.4 bits (76), Expect = 0.077
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 232 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR-ATNKWGQAEIS 290
DQ + + G I S + R V + L + + DTG Y C T G
Sbjct: 43 DQLLAICNADLGWHISPSFKDR-VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGR 101
Query: 291 VNLECVDKSKGQ 302
+ LE ++ S +
Sbjct: 102 IFLEVLESSVAE 113
Score = 33.4 bits (76), Expect = 0.085
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR-ATNKWGQAEIS 779
DQ + + G I S + R V + L + + DTG Y C T G
Sbjct: 43 DQLLAICNADLGWHISPSFKDR-VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGR 101
Query: 780 VNLECVVWSPS 790
+ LE V+ S
Sbjct: 102 IFLE-VLESSV 111
Score = 31.0 bits (70), Expect = 0.45
Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 17/101 (16%)
Query: 501 QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-------------PHGHRYRT 547
+ + ++G S + L+ T V W + L R
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67
Query: 548 FHDFGIVILDILYCYEENSGVYECR-ATNKYGSDVTKASLK 587
G+ + + ++G Y C T G+ + L+
Sbjct: 68 GPGLGLTLQSLT---VNDTGEYFCIYHTYPDGTYTGRIFLE 105
Score = 27.2 bits (60), Expect = 9.8
Identities = 12/83 (14%), Positives = 19/83 (22%), Gaps = 16/83 (19%)
Query: 86 LEAQVEPKNDPNLKIEWIFNGKPL-------------ELGSRFKTTADFGFVTLDLTEVY 132
L+ + ++ W + L R L L +
Sbjct: 23 LQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGL---GLTLQSLT 79
Query: 133 DRDQGIYTCRAWNLAGETFTSTT 155
D G Y C T+T
Sbjct: 80 VNDTGEYFCIYHTYPDGTYTGRI 102
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 43.8 bits (103), Expect = 1e-04
Identities = 14/85 (16%), Positives = 24/85 (28%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
+ I D G Y C K + + S P +
Sbjct: 76 ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV 135
Query: 323 HFECTLTPVNDPELKVEWFHNGKPI 347
F C + ++ ++WF NG +
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNEL 160
Score = 43.0 bits (101), Expect = 2e-04
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 271 EDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTP 330
+ C + Q + + S+ T + + + ++ + + C +
Sbjct: 190 DVHSQVICEVAHVTLQGDPLR--GTANLSETIRVPPTLEV-TQQPVRAENQVNVTCQVRK 246
Query: 331 VNDPELKVEWFHNGKPI 347
L++ W NG
Sbjct: 247 FYPQRLQLTWLENGNVS 263
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 3e-04
Identities = 79/469 (16%), Positives = 130/469 (27%), Gaps = 188/469 (40%)
Query: 37 GLEKVQE-VEHALAGKYQ----------RQPSGPEETFAK---------PVFI---VP-L 72
E VQ+ VE L Y+ RQPS + + VF V L
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRFKT--TADFGFVTLDLT 129
+P KL +A L LE + + +G GS KT D V L
Sbjct: 135 QPYLKLRQA--L-LELRPAK---------NVLIDGVL---GSG-KTWVALD---VCLSYK 175
Query: 130 EVYDRDQGIYTCRAW-NLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLR 188
D I+ W NL C++ E++ LE +Q L +
Sbjct: 176 VQCKMDFKIF----WLNLK---------NCNSPETV------------LEMLQKLLYQID 210
Query: 189 RQPAGVPDSEDGRPPQFTSEFQH-----------------LSNLSEGEIA---------- 221
D Q L N+ +
Sbjct: 211 PNWTSRSDHSS-NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 222 -----------------------HFEASLIPVGDQTMTV--EFLYNGKPIEASHRIRTVH 256
H +L P D+ ++ ++L + +P + + T +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLKYL-DCRPQDLPREVLTTN 326
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIK-SLEG 315
L I+ I D N W VN + K T+ I+ SL
Sbjct: 327 PR---RLSIIAESIRD---GLATWDN-WKH----VNCD----------KLTTIIESSLNV 365
Query: 316 LKDGD-SAHFE-CTLTP--VNDPE--LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYV 369
L+ + F+ ++ P + P L + WF ++ VM +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF------------DVIKS---DVMVVV-N 409
Query: 370 QSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIREL 418
+ H K ++ T + + S+ E ++
Sbjct: 410 KLHKYS-----LVEKQPKEST-----------ISIPSIYLELKVKLENE 442
Score = 29.4 bits (65), Expect = 5.4
Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 53/147 (36%)
Query: 84 LHLEAQVEPKNDPNL--KI---------------------EWIFN--G---KPLELGSRF 115
++LE +V+ +N+ L I ++ ++ G K +E R
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 116 ----KTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAG---ETFTSTTIYCSTKESLIERT 168
DF F+ + + AWN +G T Y + I
Sbjct: 491 TLFRMVFLDFRFLEQKI---------RHDSTAWNASGSILNTLQQLKFY----KPYICD- 536
Query: 169 QHPKGEEGLEKIQD----LEESLRRQP 191
PK E + I D +EE+L
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSK 563
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 40.3 bits (94), Expect = 4e-04
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 23/97 (23%)
Query: 319 GDSAHFECTLTPVNDPE-LKVEWFHNG--KPIF---------------HKNRVKMVSD-- 358
GD A C ++P + ++V W+ + + + ++ R +++ +
Sbjct: 21 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI 80
Query: 359 -FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
G V + I V+ D G Y C + A +
Sbjct: 81 GEGKVALRIQNVRFSDEGGYTCFF--RDHSYQEEAAV 115
Score = 30.7 bits (69), Expect = 0.87
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
G V L I + D G YTC + Q E +V L+
Sbjct: 83 GKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 118
Score = 30.7 bits (69), Expect = 0.87
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
G V L I + D G YTC + Q E +V L+
Sbjct: 83 GKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 118
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 42.2 bits (99), Expect = 5e-04
Identities = 36/262 (13%), Positives = 71/262 (27%), Gaps = 29/262 (11%)
Query: 137 GIYTCRAW-NLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVP 195
G+Y+ + + + + T C H ++K E + P
Sbjct: 188 GLYSLSSVVTVPSSSLGTQTYIC--------NVNHKPSNTKVDKK--AEPKSCDKTHTCP 237
Query: 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLI------PVGDQTMTVEFLYNGKPIEAS 249
S F + + + D + + +G + +
Sbjct: 238 PCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNA 297
Query: 250 HRIRTVHAFG-----MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
+ + VL +L + Y C+ +NK A I + +P
Sbjct: 298 KTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ 357
Query: 305 KFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG--FV 362
+T + + C + ++ VEW NG+P + V D F
Sbjct: 358 VYT--LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFF 415
Query: 363 VMDIAYVQSHD--SGE-YVCRA 381
+ V G + C
Sbjct: 416 LYSKLTVDKSRWQQGNVFSCSV 437
Score = 32.9 bits (75), Expect = 0.42
Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 9/168 (5%)
Query: 2 VKATNSKGSATTSGTLKC--LGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGP 59
V ++ S ++ T+ LG + H ++K E + P
Sbjct: 183 VLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAP 242
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVE--PKNDPNLKIEWIFNGKPLELGSRFKT 117
E VF+ P KP+ L ++ + V DP +K W +G +
Sbjct: 243 ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR 302
Query: 118 TADFG-----FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCST 160
+ L + + Y C+ N A TI +
Sbjct: 303 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK 350
Score = 29.1 bits (65), Expect = 6.9
Identities = 24/174 (13%), Positives = 49/174 (28%), Gaps = 25/174 (14%)
Query: 636 EENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFT 695
+ Y C +K + +K + E + + P E P
Sbjct: 202 SLGTQTYICNVNHKPSN----------TKVDKKAEPKSCDKTHTCPPCPAPELLGGPSV- 250
Query: 696 SEFQHLSNLSEGEIAHFEASLI------PVGDQTMTVEFLYNGKPIEASHRIRTVHAFG- 748
F + + + D + + +G + + +
Sbjct: 251 --FLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNS 308
Query: 749 ----MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSL 798
+ VL +L + Y C+ +NK A I + P + + VY+L
Sbjct: 309 TYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ-VYTL 361
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 39.6 bits (92), Expect = 6e-04
Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 19/81 (23%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFH-----------------KNRVKMVSDF-- 359
G C + + W P + ++
Sbjct: 11 GQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQF 70
Query: 360 GFVVMDIAYVQSHDSGEYVCR 380
G V + I+ DSG Y CR
Sbjct: 71 GEVSLTISNTNRGDSGVYCCR 91
Score = 28.4 bits (63), Expect = 4.3
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 19/80 (23%)
Query: 82 QPLHLEAQVEPKNDPNLKIEWIFNGKPL-----------------ELGSRFKTTADF--G 122
QP+ L + + W P +++ G
Sbjct: 12 QPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFG 71
Query: 123 FVTLDLTEVYDRDQGIYTCR 142
V+L ++ D G+Y CR
Sbjct: 72 EVSLTISNTNRGDSGVYCCR 91
Score = 27.6 bits (61), Expect = 7.3
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 19/82 (23%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWF---------------YNGKKLPHGH--RYRTFHDF- 551
GQ + + W +G ++ +Y
Sbjct: 10 LGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQ 69
Query: 552 -GIVILDILYCYEENSGVYECR 572
G V L I +SGVY CR
Sbjct: 70 FGEVSLTISNTNRGDSGVYCCR 91
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 42.4 bits (98), Expect = 6e-04
Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 20/182 (10%)
Query: 525 DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
DP H + + D C +++ G Y G+ A
Sbjct: 496 DPYCAWSPPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGT----A 551
Query: 585 SLKCVSKTNLILESQLPEVEWFYNGKKLP-HGHRYRTFHDFGIVILDILYCYEENSGVYE 643
LKC +S L V W + L +Y ++I ++ E +SGVY+
Sbjct: 552 ELKCS------QKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNL---SEGDSGVYQ 602
Query: 644 CRATNK-YGSDVTKASLKCVSKTNLI----LESQLPELRRQPAGVPDSEDGRPPQFTSEF 698
C + + V + K V + ++ + L ++ ++
Sbjct: 603 CLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQT-EGSRIATKVLVASTKHHHH 661
Query: 699 QH 700
H
Sbjct: 662 HH 663
Score = 35.5 bits (80), Expect = 0.080
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPI-FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
+A +C +V W + + ++ ++ + + DSG Y
Sbjct: 549 GTAELKC---SQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFN---LSEGDSGVYQ 602
Query: 379 CRA 381
C +
Sbjct: 603 CLS 605
Score = 34.0 bits (76), Expect = 0.23
Identities = 12/114 (10%), Positives = 28/114 (24%), Gaps = 14/114 (12%)
Query: 99 KIEWIFNGKPLEL-GSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
++ W F L+ ++ + +L+ + D G+Y C + T
Sbjct: 563 RVFWKFQNGVLKAESPKYGLMGRKNLLIFNLS---EGDSGVYQCLSEE---RVKNKTVFQ 616
Query: 158 CSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
K L + + + ++ H
Sbjct: 617 VVAKHVLEVKVVPKPVVAPTLSVV-------QTEGSRIATKVLVASTKHHHHHH 663
Score = 32.0 bits (71), Expect = 0.81
Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 2/96 (2%)
Query: 236 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 295
V + + ++A + L I D+GVY C + + + +
Sbjct: 563 RVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAK 620
Query: 296 VDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPV 331
PK +G + +
Sbjct: 621 HVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVAST 656
Score = 30.1 bits (66), Expect = 3.3
Identities = 13/113 (11%), Positives = 26/113 (23%), Gaps = 2/113 (1%)
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
C L + G+ G + + +
Sbjct: 499 CAWSPPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQK 558
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 773
V + + ++A + L I D+GVY C + +
Sbjct: 559 SNLARVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVYQCLSEERV 609
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 39.5 bits (92), Expect = 7e-04
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 28/102 (27%)
Query: 319 GDSAHFECTLT--PVNDPELKVEWF---------------HNGKPIFH------KNRVKM 355
G++A+ C T P + L +EW ++G I+ K RV
Sbjct: 20 GETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHF 79
Query: 356 VSDF---GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
S+ G +++ +Q D G Y C+ K I
Sbjct: 80 TSNDLKSGDASINVTNLQLSDIGTYQCKV--KKAPGVANKKI 119
Score = 31.8 bits (72), Expect = 0.32
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786
G + + ++ D G Y C+ G A ++L +V
Sbjct: 87 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
Score = 31.4 bits (71), Expect = 0.44
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
G + + ++ D G Y C+ G A ++L + K
Sbjct: 87 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 126
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 41.0 bits (96), Expect = 7e-04
Identities = 23/163 (14%), Positives = 43/163 (26%), Gaps = 19/163 (11%)
Query: 229 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288
+ + N E R++ + I G Y C+ +
Sbjct: 33 IREAYLTQLMIIKNSTYREIGRRLKFWNE-TDPEFVIDHMDANKAGRYQCQYRIGHYRFR 91
Query: 289 ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-----N 343
S LE V P ++ + L G++ C+ + + F
Sbjct: 92 YSDTLELVVTGLYGKPFLSADRGLV--LMPGENISLTCS-----SAHIPFDRFSLAKEGE 144
Query: 344 GKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
H++ + + V + SG Y C W
Sbjct: 145 LSLPQHQSGEHPAN------FSLGPVDLNVSGIYRCYGWYNRS 181
Score = 34.5 bits (79), Expect = 0.10
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 1/72 (1%)
Query: 718 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
+ + N E R++ + I G Y C+ +
Sbjct: 33 IREAYLTQLMIIKNSTYREIGRRLKFWNE-TDPEFVIDHMDANKAGRYQCQYRIGHYRFR 91
Query: 778 ISVNLECVVWSP 789
S LE VV
Sbjct: 92 YSDTLELVVTGL 103
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 38.8 bits (90), Expect = 7e-04
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 20/82 (24%)
Query: 319 GDSAHFECTLT-PVNDPELKVEWFHNGKPIFH-----------------KNRVKMVSDF- 359
G +A+ C+ T P + + + W P +R ++ D
Sbjct: 9 GKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLN 68
Query: 360 -GFVVMDIAYVQSHDSGEYVCR 380
G V + I V D G Y CR
Sbjct: 69 KGDVSLIIKNVTLDDHGTYCCR 90
Score = 28.7 bits (64), Expect = 2.8
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 20/84 (23%)
Query: 509 KEGQSAHFEARLTPVTDPDLV-VEWF---------------YNGKKLPHGH--RYRTFHD 550
+ G++A+ T T LV + W + + + + RY+ D
Sbjct: 7 EVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGD 66
Query: 551 F--GIVILDILYCYEENSGVYECR 572
G V L I ++ G Y CR
Sbjct: 67 LNKGDVSLIIKNVTLDDHGTYCCR 90
Score = 28.4 bits (63), Expect = 3.3
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 113 SRFKTTADF--GFVTLDLTEVYDRDQGIYTCR 142
SR++ D G V+L + V D G Y CR
Sbjct: 59 SRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCR 90
Score = 27.6 bits (61), Expect = 7.0
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786
G V L I ++D G Y CR + + L+ +
Sbjct: 70 GDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
Score = 27.6 bits (61), Expect = 7.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 259 GMVVLEILGTKIEDTGVYTCR 279
G V L I ++D G Y CR
Sbjct: 70 GDVSLIIKNVTLDDHGTYCCR 90
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 41.8 bits (98), Expect = 8e-04
Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 12/160 (7%)
Query: 232 DQTMTVEFLYNGKPIEASHRIRTVHAFG-----MVVLEILGTKIEDTGVYTCRATNKWGQ 286
D + + + + + F + L I+ + + CR +
Sbjct: 261 DPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFP 320
Query: 287 AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKP 346
A I + K K + P+ + E + D C +T ++ VEW +G+
Sbjct: 321 APIEKTI-SKTKGKPRAPQVYTIPPPKEQM-AKDKVSLTCMITDFFPEDITVEWQSDGQA 378
Query: 347 IFHKNRVKMVSDFG--FVVMDIAYVQSHD--SGE-YVCRA 381
+ + + D + V VQ + +G + C
Sbjct: 379 PENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSV 418
Score = 39.9 bits (93), Expect = 0.003
Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 15/136 (11%)
Query: 276 YTCRATNKWGQAEISVNLE--------CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECT 327
TC + ++ + C+ F K + L + C
Sbjct: 194 VTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCV 253
Query: 328 LTPV--NDPELKVEWFHNGKPI---FHKNRVKMVSDF--GFVVMDIAYVQSHDSGEYVCR 380
+ + +DPE++ WF + + + R + + + I + + E+ CR
Sbjct: 254 VVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCR 313
Query: 381 AWNKYGEDFTRATIKC 396
+ TI
Sbjct: 314 VNSAAFPAPIEKTISK 329
Score = 31.4 bits (71), Expect = 1.3
Identities = 23/148 (15%), Positives = 40/148 (27%), Gaps = 13/148 (8%)
Query: 23 KDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQ 82
+ + HP + ++K +P VFI P KP+ L
Sbjct: 192 ETVTCNVAHPASSTKVDKKIVPR-----DCGCKPCICTVPEVSSVFIFPPKPKDTLLITV 246
Query: 83 PLHLEAQVE--PKNDPNLKIEWIFNGKPLELGSRFKTTADFG-----FVTLDLTEVYDRD 135
+ V K+DP ++ W + + F L + +
Sbjct: 247 TPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLN 306
Query: 136 QGIYTCRAWNLAGETFTSTTIYCSTKES 163
+ CR + A TK
Sbjct: 307 GKEFKCRVNS-AAFPAPIEKTISKTKGK 333
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 39.6 bits (92), Expect = 8e-04
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 69 IVPLKPE--FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF--GFV 124
VP K E ++ E + Q E K N K+ +IFN K + G ++K D G +
Sbjct: 38 TVPTKSELAVEILEKGQVRFWMQAE-KLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGII 96
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTS 153
+ + ++ D D+G YT + + ++
Sbjct: 97 EMFMEKLQDEDEGTYTFQIQDGKATGHST 125
Score = 32.7 bits (74), Expect = 0.19
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 236 TVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
V +++N K I +++ G++ + + + ED G YT + + ++ L
Sbjct: 69 KVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHSTLVL 128
Score = 32.7 bits (74), Expect = 0.19
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 725 TVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
V +++N K I +++ G++ + + + ED G YT + + ++ L
Sbjct: 69 KVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHSTLVL 128
Score = 32.3 bits (73), Expect = 0.25
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 598 SQLPEVEWFYNGKKLPHGHRYRTFHDF--GIVILDILYCYEENSGVYECRATNKYGSD 653
S +V + +N K++ G +Y+ D GI+ + + +E+ G Y + + +
Sbjct: 65 SSNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATG 122
Score = 31.9 bits (72), Expect = 0.31
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 526 PDLVVEWFYNGKKLPHGHRYRTFHDF--GIVILDILYCYEENSGVYECRATNKYGSD 580
+ V + +N K++ G +Y+ D GI+ + + +E+ G Y + + +
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATG 122
Score = 29.6 bits (66), Expect = 2.1
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 334 PELKVEWFHNGKPIFH--KNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGED 388
KV + N K IF K ++ + + G + M + +Q D G Y + +
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATG 122
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 40.3 bits (94), Expect = 0.001
Identities = 24/135 (17%), Positives = 39/135 (28%), Gaps = 28/135 (20%)
Query: 274 GVYTCRATNKWG-------QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFEC 326
G +C T+ SV L PPK + L + C
Sbjct: 1 GTKSCDKTHTCPPCPAPELLGGPSVFL--------FPPK------PKDTLMISRTPEVTC 46
Query: 327 TLT--PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM-----DIAYVQSHDSGEYVC 379
+ DPE+K W+ +G + + + + + + EY C
Sbjct: 47 VVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKC 106
Query: 380 RAWNKYGEDFTRATI 394
+ NK TI
Sbjct: 107 KVSNKALPAPIEKTI 121
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/190 (11%), Positives = 46/190 (24%), Gaps = 15/190 (7%)
Query: 473 LFSNFFPSQGQQPVAQAAPVAEAPK-FITQISDVTQLK-EGQSAHFEARLTPVTDPDLVV 530
P + + + AE K +++ +V+Q+ + + + D
Sbjct: 408 NIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVPLDLCEVYGGGCHGCLMSRDPYC 467
Query: 531 EWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVS 590
W + + + + S L C
Sbjct: 468 GWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYY---LSCP- 523
Query: 591 KTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT-NK 649
+ES+ W + + + I ++ + G Y C A
Sbjct: 524 -----MESRHATYSWRHKENVEQSCEPGHQSPNCILFIENLT---AQQYGHYFCEAQEGS 575
Query: 650 YGSDVTKASL 659
Y + L
Sbjct: 576 YFREAQHWQL 585
Score = 38.5 bits (88), Expect = 0.010
Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 6/60 (10%)
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381
+ C P+ W H + + + + + G Y C A
Sbjct: 518 YYLSC---PMESRHATYSWRHKENVEQSCEPGHQSPNCILFIEN---LTAQQYGHYFCEA 571
Score = 37.3 bits (85), Expect = 0.021
Identities = 24/179 (13%), Positives = 51/179 (28%), Gaps = 11/179 (6%)
Query: 416 RELENAQGQQPVAQAAPVAEAPK-FITQISDVTQLK-EGQSAHFEARLTPVTDPDLVCEL 473
E++ + + + AE K +++ +V+Q+ + + + D C
Sbjct: 410 MEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVPLDLCEVYGGGCHGCLMSRDPYCGW 469
Query: 474 --FSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLT---PVTDPDL 528
++ V Q+ AE K + S +R P+
Sbjct: 470 DQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMESRHA 529
Query: 529 VVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT-NKYGSDVTKASL 586
W + + + I ++ + G Y C A Y + L
Sbjct: 530 TYSWRHKENVEQSCEPGHQSPNCILFIENLT---AQQYGHYFCEAQEGSYFREAQHWQL 585
Score = 33.8 bits (76), Expect = 0.21
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 99 KIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143
W + + + +LT + G Y C A
Sbjct: 530 TYSWRHKENVEQSCEPGHQSPNCILFIENLTA---QQYGHYFCEA 571
Score = 29.6 bits (65), Expect = 4.3
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 229 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 283
P+ + T + + ++ +L I + G Y C A
Sbjct: 523 PMESRHATYSWRHKENVEQSCEPGHQS---PNCILFIENLTAQQYGHYFCEAQEG 574
Score = 29.6 bits (65), Expect = 4.3
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 718 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 772
P+ + T + + ++ +L I + G Y C A
Sbjct: 523 PMESRHATYSWRHKENVEQSCEPGHQS---PNCILFIENLTAQQYGHYFCEAQEG 574
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 39.5 bits (92), Expect = 0.001
Identities = 25/172 (14%), Positives = 44/172 (25%), Gaps = 16/172 (9%)
Query: 226 SLIPVGD--------QTMTVEF-LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY 276
S+I G+ E+ L E + I G Y
Sbjct: 14 SVISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRY 73
Query: 277 TCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL 336
C + G +E S LE V P ++ + G++ +C D
Sbjct: 74 RCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS--PVVTSGENVTLQCGSRLRFD--- 128
Query: 337 KVEWFHNG--KPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
+ G K + + S + + V C ++
Sbjct: 129 RFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI 180
Score = 31.8 bits (72), Expect = 0.62
Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 9/84 (10%)
Query: 715 SLIPVGD--------QTMTVEF-LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY 765
S+I G+ E+ L E + I G Y
Sbjct: 14 SVISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRY 73
Query: 766 TCRATNKWGQAEISVNLECVVWSP 789
C + G +E S LE VV
Sbjct: 74 RCYYYSPAGWSEPSDPLELVVTGF 97
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 40.3 bits (93), Expect = 0.002
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 3/86 (3%)
Query: 576 KYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY 635
G +T C+ K N P++ W + P G + R I+ + +
Sbjct: 13 HLGDPIT---ASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLN 69
Query: 636 EENSGVYECRATNKYGSDVTKASLKC 661
+ + + + L+
Sbjct: 70 HTQAFLSCSLNWGNSLQILDQVELRA 95
Score = 34.1 bits (77), Expect = 0.15
Identities = 8/81 (9%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 319 GDSAHFECTLTPVN---DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSG 375
GD C + DPE ++ W + + ++ ++ + ++ +
Sbjct: 15 GDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAF 74
Query: 376 EYVCRAWNKYGEDFTRATIKC 396
W + + ++
Sbjct: 75 LSCSLNWGNSLQILDQVELRA 95
Score = 32.2 bits (72), Expect = 0.57
Identities = 9/84 (10%), Positives = 23/84 (27%), Gaps = 3/84 (3%)
Query: 508 LKEGQSAHFEARLTP---VTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 564
+ G + DP+ + W + P G + R I+ + +
Sbjct: 12 VHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHT 71
Query: 565 NSGVYECRATNKYGSDVTKASLKC 588
+ + + + L+
Sbjct: 72 QAFLSCSLNWGNSLQILDQVELRA 95
Score = 31.1 bits (69), Expect = 1.4
Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 1/99 (1%)
Query: 69 IVPLKPEFKLGEAQPLHLEAQVEPKN-DPNLKIEWIFNGKPLELGSRFKTTADFGFVTLD 127
I P LG+ + + DP +I W + G + + + +
Sbjct: 5 ISVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIIT 64
Query: 128 LTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIE 166
L + + W + + + ++
Sbjct: 65 LPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPH 103
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 39.4 bits (92), Expect = 0.002
Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 11/125 (8%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
L I K G Y C N + S LE V P ++ + G
Sbjct: 54 LFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPA--VSSGGDV 111
Query: 323 HFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV-SDFGFVVMDIAYVQSHDSGEYVCRA 381
+C D + + G P +KN + + F I V + SG Y C +
Sbjct: 112 TLQCQTRYGFD---QFALYKEGDPAPYKNPERWYRASF-----PIITVTAAHSGTYRCYS 163
Query: 382 WNKYG 386
++
Sbjct: 164 FSSRD 168
Score = 31.7 bits (72), Expect = 0.59
Identities = 11/41 (26%), Positives = 12/41 (29%)
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQT 792
L I K G Y C N + S LE V
Sbjct: 54 LFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAK 94
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 37.5 bits (86), Expect = 0.002
Identities = 10/55 (18%), Positives = 16/55 (29%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 655
E+ W +N K + + + + E SG Y C D
Sbjct: 34 SEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 88
Score = 37.1 bits (85), Expect = 0.003
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G + C P ++ W HN K I K + + + + SG YV
Sbjct: 21 GTTVILTCPQ----YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYV 76
Query: 379 CRAWNKYGED 388
C ED
Sbjct: 77 CYPRGSKPED 86
Score = 35.9 bits (82), Expect = 0.008
Identities = 10/58 (17%), Positives = 16/58 (27%)
Query: 525 DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 582
P + W +N K + + + + E SG Y C D
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 88
Score = 30.5 bits (68), Expect = 0.57
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTT-ADFGFVTL-DLTEVYDRDQGIYTCRAWNLAGETFT 152
P +I W N K + K +D ++L + +E+ G Y C E
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSEL--EQSGYYVCYPRGSKPEDAN 88
Query: 153 STT 155
Sbjct: 89 FYL 91
Score = 30.1 bits (67), Expect = 0.75
Identities = 7/53 (13%), Positives = 19/53 (35%)
Query: 236 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288
+ + +N K I + + + + +++E +G Y C +
Sbjct: 35 EILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 87
Score = 30.1 bits (67), Expect = 0.75
Identities = 7/53 (13%), Positives = 19/53 (35%)
Query: 725 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
+ + +N K I + + + + +++E +G Y C +
Sbjct: 35 EILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 87
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 37.6 bits (87), Expect = 0.002
Identities = 11/81 (13%), Positives = 19/81 (23%), Gaps = 19/81 (23%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIF-----------------HKNRVKMVSDF-- 359
G C + + + W +R ++ +
Sbjct: 12 GHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISE 71
Query: 360 GFVVMDIAYVQSHDSGEYVCR 380
G V + I D G Y C
Sbjct: 72 GNVSLTIENTVVGDGGPYCCV 92
Score = 30.3 bits (68), Expect = 0.93
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 251 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+++ + G V L I T + D G Y C + LE
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLE 107
Score = 30.3 bits (68), Expect = 0.93
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 740 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+++ + G V L I T + D G Y C + LE
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLE 107
Score = 28.4 bits (63), Expect = 3.5
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 19/82 (23%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWF---------------YNGKKLPHGH--RYRTFHDF- 551
G + + + W NG + H RY+ +
Sbjct: 11 AGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNIS 70
Query: 552 -GIVILDILYCYEENSGVYECR 572
G V L I + G Y C
Sbjct: 71 EGNVSLTIENTVVGDGGPYCCV 92
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 39.6 bits (92), Expect = 0.003
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVN-----LECVDKSKGQPPKFTSHIKSLEGLK 317
LEI ++ D+ +Y C ++ W Q L D PP+ S +
Sbjct: 103 LEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEIS 162
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPI 347
A C T +++ W+ NGK +
Sbjct: 163 HTQKATLVCLATGFYPDHVELSWWVNGKEV 192
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 37.5 bits (86), Expect = 0.003
Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 15/105 (14%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLT---PVNDPELKVEWF---------HNGKPIFHK 350
F S+ ++ G A + + P ++WF +G K
Sbjct: 12 TGVFLKKPDSVS-VETGKDAVVVAKVNGKELPDKPT--IKWFKGKWLELGSKSGARFSFK 68
Query: 351 NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
S+ V + I V D G Y K D I
Sbjct: 69 ESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
Score = 35.2 bits (80), Expect = 0.019
Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 11/111 (9%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL-VVEWF---------YNG 536
+ F+ + V+ ++ G+ A A++ PD ++WF +G
Sbjct: 4 GSSGAEEPTGVFLKKPDSVS-VETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSG 62
Query: 537 KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ + + + V L I + G Y K D ++
Sbjct: 63 ARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
Score = 34.4 bits (78), Expect = 0.031
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
L I + D G Y K N++
Sbjct: 82 LHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
Score = 34.4 bits (78), Expect = 0.031
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L I + D G Y K N++
Sbjct: 82 LHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
Score = 34.0 bits (77), Expect = 0.048
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 14/92 (15%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWF---------YNGKKLPHGHRYRTFHDFGIVI 628
G D + V+ L + P ++WF +G + + + + V
Sbjct: 27 GKDAVVVA--KVNGKELPDK---PTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVE 81
Query: 629 LDILYCYEENSGVYECRATNKYGSDVTKASLK 660
L I + G Y K D ++
Sbjct: 82 LHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
Score = 29.4 bits (65), Expect = 1.6
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 15/113 (13%)
Query: 56 PSGPEETFAKPVFIVPLKPE-FKLGEAQPLHLEAQVEPKNDPNL-KIEWIFNGKPLELGS 113
VF+ KP+ + + + A+V K P+ I+W F GK LELGS
Sbjct: 3 SGSSGAEEPTGVFLK--KPDSVSVETGKDAVVVAKVNGKELPDKPTIKW-FKGKWLELGS 59
Query: 114 R----------FKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ + ++ V L + +V D+G Y I
Sbjct: 60 KSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNI 112
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 39.3 bits (91), Expect = 0.003
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 13/95 (13%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
L + G ++E+ G Y C +A+ +V LE P + + +
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLE-----VVASPASRLLLDQVGMK--ENED 136
Query: 323 HFECTLT---PVNDPELKVEWFHNGKPIFHKNRVK 354
+ C + P + + W + H +
Sbjct: 137 KYMCESSGFYP---EAINITWEKQTQKFPHPIEIS 168
Score = 32.7 bits (74), Expect = 0.34
Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 21/96 (21%)
Query: 319 GDSAHFECTLT---PVNDPELKVEWF----HNGKP--IFHKNRVKMVSDFGFVVMD---- 365
D+ C + P+N + + WF K +F + ++
Sbjct: 18 NDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRL 77
Query: 366 --------IAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
+ +Q ++GEY C +
Sbjct: 78 KSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQ 113
Score = 32.0 bits (72), Expect = 0.63
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQT 792
L + G ++E+ G Y C +A+ +V LE VV SP+
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLE-VVASPASR 123
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 39.1 bits (91), Expect = 0.003
Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 11/109 (10%)
Query: 295 CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT--PVNDPELKVEWFHNGKPIFHKNR 352
C F K+ + L G + C + NDPE++ WF + +
Sbjct: 8 CGCTGSEVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEV--HTA 65
Query: 353 VKMVSDFGF-------VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + I + + C+ + +I
Sbjct: 66 QTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSI 114
Score = 31.0 bits (70), Expect = 1.2
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
L I+ + + C+ + A I ++ + + P +T E
Sbjct: 83 ELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEE--MTQSQ 140
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPI 347
C + P++ EW NG+P
Sbjct: 141 VSITCMVKGFYPPDIYTEWKMNGQPQ 166
Score = 29.9 bits (67), Expect = 3.2
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 17/113 (15%)
Query: 56 PSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVE--PKNDPNLKIEWIFNGKPL---- 109
P G + VFI P K + LG + V +NDP ++ W + +
Sbjct: 7 PCGCTGSEVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQ 66
Query: 110 ------ELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ S ++ + L + E + + C+ + A +I
Sbjct: 67 THAPEKQSNSTLRSVS-----ELPIVERDWLNGKTFKCKVNSGAFPAPIEKSI 114
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 39.5 bits (92), Expect = 0.003
Identities = 32/223 (14%), Positives = 62/223 (27%), Gaps = 23/223 (10%)
Query: 137 GIYTCRAW-NLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVP 195
+YT + + T+ S +I C+ HP ++K + +P
Sbjct: 178 DLYTLSSSVTVTSSTWPSQSITCNV--------AHPASSTKVDKKIE-PRGPTIKPCPPC 228
Query: 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLI------PVGDQTMTVEFLYNGKPIEAS 249
S F + + + + D + + + N + +
Sbjct: 229 KCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTA 288
Query: 250 HRIRTVHAFG-----MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
+ + L I + C+ NK A I + S P
Sbjct: 289 QTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQ 348
Query: 305 KFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI 347
+ + E C +T ++ VEW +NGK
Sbjct: 349 VYV--LPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTE 389
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 38.9 bits (90), Expect = 0.004
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEI--SVNLECVDKSKG-QPPKFTSHIKSLEGLKDG 319
L+I T+ D+ VY C + L ++ K PP+ S +
Sbjct: 102 LKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHT 161
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPI 347
A C T +++ W+ NGK +
Sbjct: 162 QKATLVCLATGFYPDHVELSWWVNGKEV 189
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 39.1 bits (90), Expect = 0.005
Identities = 17/83 (20%), Positives = 21/83 (25%), Gaps = 5/83 (6%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P L L GDS C + V W +
Sbjct: 6 CPAQEVARGVLTSLP-GDSVTLTCP-GVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63
Query: 363 VMDIAYVQSHDSGEYVCRAWNKY 385
+ VQ HDSG Y C +
Sbjct: 64 ---LRSVQLHDSGNYSCYRAGRP 83
Score = 37.9 bits (87), Expect = 0.009
Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 18/102 (17%)
Query: 574 TNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILY 633
T+ G VT L C V W +++ +
Sbjct: 17 TSLPGDSVT---LTCPGVE----PEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSV-- 67
Query: 634 CYEENSGVYECRATNKYGSDVT--------KASLKCVSKTNL 667
+SG Y C + V + L C K+ L
Sbjct: 68 -QLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKSPL 108
Score = 34.8 bits (79), Expect = 0.089
Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 17/107 (15%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK-WGQAEI 289
+ TV ++ + L + ++ D+G Y+C + G +
Sbjct: 33 PEDNATVHWVLRKPAAGSHPSRWAGM---GRRLLLRSVQLHDSGNYSCYRAGRPAGTVHL 89
Query: 290 SVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL 336
V PP L + ++ C P + P L
Sbjct: 90 LV---------DVPP----EEPQLSCFRKSPLSNVVCEWGPRSTPSL 123
Score = 33.7 bits (76), Expect = 0.23
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 6/63 (9%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
+ N + W+ L L V D G Y+C AG +
Sbjct: 34 EDNATVHWVLRKPAAGSHPSRWAGMG---RRLLLRSVQLHDSGNYSCYR---AGRPAGTV 87
Query: 155 TIY 157
+
Sbjct: 88 HLL 90
Score = 33.3 bits (75), Expect = 0.26
Identities = 15/111 (13%), Positives = 26/111 (23%), Gaps = 13/111 (11%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
P +T G S + + V W
Sbjct: 3 PRRCPAQEVARGVLT-SLPGDSVTLTCP-GVEPEDNATVHWVLRKPAAGSHPSRWAGMGR 60
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVT--------KASLKCVSKTNL 594
+++ + +SG Y C + V + L C K+ L
Sbjct: 61 RLLLRSV---QLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKSPL 108
Score = 32.9 bits (74), Expect = 0.40
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 11/81 (13%)
Query: 720 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK-WGQAEI 778
+ TV ++ + L + ++ D+G Y+C + G +
Sbjct: 33 PEDNATVHWVLRKPAAGSHPSRWAGM---GRRLLLRSVQLHDSGNYSCYRAGRPAGTVHL 89
Query: 779 SV-------NLECVVWSPSQT 792
V L C SP
Sbjct: 90 LVDVPPEEPQLSCFRKSPLSN 110
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 36.8 bits (85), Expect = 0.005
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 17/86 (19%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGK-----------PIFH---KNRVKMVSDFGFVVM 364
G + + + + + ++ WF+ F K RV++ G +
Sbjct: 19 GSNVTLNISESLPENYK-QLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSG--AL 75
Query: 365 DIAYVQSHDSGEYVCRAWNKYGEDFT 390
I+ VQ D+ Y+ R K G +
Sbjct: 76 YISKVQKEDNSTYIMRVLKKTGNEQE 101
Score = 32.6 bits (74), Expect = 0.13
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 93 KNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT--LDLTEVYDRDQGIYTCRAWNLAGET 150
+ KI + K S+FK + L +++V D Y R G
Sbjct: 40 FYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNE 99
Query: 151 FTST 154
Sbjct: 100 QEWK 103
Score = 29.1 bits (65), Expect = 2.3
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 14/55 (25%)
Query: 752 LEILGTKIEDTGVYTCRATNKWGQA-EISVNLECVVWSPSQTKLVYSLFEVPQPD 805
L I + ED Y R K G E + L+ V VP+P
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQ-----------VLD--PVPKPV 116
Score = 28.7 bits (64), Expect = 3.5
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQA-EISVNLE 294
L I + ED Y R K G E + L+
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQ 107
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 37.5 bits (87), Expect = 0.007
Identities = 25/170 (14%), Positives = 42/170 (24%), Gaps = 15/170 (8%)
Query: 226 SLIPVGDQ--------TMTVEF-LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY 276
S+I G+ E+ L + R + I + G Y
Sbjct: 14 SVISWGNSVTIWCQGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRY 73
Query: 277 TCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL 336
C + G ++ S LE V P ++ + G S C D
Sbjct: 74 RCYYRSPVGWSQPSDPLELVMTGAYSKPTLSAL--PSPLVTSGKSVTLLCQSRSPMD--- 128
Query: 337 KVEWFHNGKPIFHKNRVKMVSDFGFVVM-DIAYVQSHDSGEYVCRAWNKY 385
++ V S G Y C + + +
Sbjct: 129 TFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGF 178
Score = 33.3 bits (76), Expect = 0.21
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 9/84 (10%)
Query: 715 SLIPVGDQ--------TMTVEF-LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY 765
S+I G+ E+ L + R + I + G Y
Sbjct: 14 SVISWGNSVTIWCQGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRY 73
Query: 766 TCRATNKWGQAEISVNLECVVWSP 789
C + G ++ S LE V+
Sbjct: 74 RCYYRSPVGWSQPSDPLELVMTGA 97
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 36.1 bits (83), Expect = 0.009
Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 31/115 (26%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTP--VNDPELKVEWF----HNGKPIFH-----K 350
QPP+ I++LEG SA C+ V WF GK + + +
Sbjct: 13 QPPE----IRTLEG----SSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFR 64
Query: 351 NRVKMVSDFGFVVMD-----IAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKG 400
R+ ++ F+ I V+ HD+ YVCR G G
Sbjct: 65 GRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLG-------VGTGNG 112
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 37.9 bits (88), Expect = 0.009
Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 9/126 (7%)
Query: 265 ILGTKIEDTGVYTCRATNKWGQAEISVN---LECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
+ G YTCR ++ S + + + P +H L +K G+
Sbjct: 78 MSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL--VKSGER 135
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM-DIAYVQSHDSGEYVCR 380
+C + + G V + D I + +G Y C
Sbjct: 136 VILQCWSDIMFE---HFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCY 192
Query: 381 AWNKYG 386
+
Sbjct: 193 GSVTHT 198
Score = 32.5 bits (74), Expect = 0.48
Identities = 22/148 (14%), Positives = 41/148 (27%), Gaps = 7/148 (4%)
Query: 239 FLY-NGKPIEASHRIRTVHAFG-MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
FL+ G + S + +H I + G Y C + ++S + +
Sbjct: 150 FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPL 209
Query: 297 DKS-KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM 355
D G K + + ++ G+S C+ G +
Sbjct: 210 DIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR---SSYDMYHLSREGGAHERRLPAVR 266
Query: 356 VSDFGFVVMDIAYVQSHDSGEYVCRAWN 383
+ F D + G Y C
Sbjct: 267 KVNRTFQA-DFPLGPATHGGTYRCFGSF 293
Score = 29.8 bits (67), Expect = 3.2
Identities = 29/205 (14%), Positives = 55/205 (26%), Gaps = 42/205 (20%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTF-HDFGIVILDILYCYE 636
G VT L+C + + + + R F F + +
Sbjct: 38 GGHVT---LRCHYRH------RFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVT-----T 83
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
++G Y CR ++ + S + + + R+P +
Sbjct: 84 AHAGNYTCRGSHPHSPTGW-------SAPSNPVVIMVTGNHRKP--------------SL 122
Query: 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFG-MVVLEI 754
+ GE L D FL+ G + S + +H I
Sbjct: 123 LAHPGPLVKSGE----RVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSI 178
Query: 755 LGTKIEDTGVYTCRATNKWGQAEIS 779
+ G Y C + ++S
Sbjct: 179 GPMMLALAGTYRCYGSVTHTPYQLS 203
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 35.6 bits (82), Expect = 0.011
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 21/81 (25%)
Query: 319 GDSAHFECTLTPVNDP---ELKVEW----------FHNGKPIF------HKNRVKMVSDF 359
++A C + EL V W + GK F + R SD
Sbjct: 9 NETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDS 68
Query: 360 GFVVMDIAYVQSHDSGEYVCR 380
+ + +Q D G Y C
Sbjct: 69 --WTLRLHNLQIKDKGLYQCI 87
Score = 29.4 bits (66), Expect = 1.4
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 235 MTVEFLYNGKP----IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
+ + +Y GK + + + RT L + +I+D G+Y C +K I
Sbjct: 39 LVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIR 98
Query: 291 VNLECVD 297
++ +
Sbjct: 99 IHQMNSE 105
Score = 29.0 bits (65), Expect = 2.2
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 724 MTVEFLYNGKP----IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
+ + +Y GK + + + RT L + +I+D G+Y C +K I
Sbjct: 39 LVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIR 98
Query: 780 VNLECV 785
++
Sbjct: 99 IHQMNS 104
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 37.1 bits (86), Expect = 0.012
Identities = 32/172 (18%), Positives = 49/172 (28%), Gaps = 19/172 (11%)
Query: 226 SLIPVGDQ--------TMTVEF-LY-NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGV 275
S+I G T E+ LY K RI I E TG
Sbjct: 14 SVITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQELVK-KGQFPIPSITWEHTGR 72
Query: 276 YTCRA-TNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP 334
Y C ++ G++E S LE V P ++ + + G + +C D
Sbjct: 73 YRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPV--VNSGGNVTLQCDSQVAFD- 129
Query: 335 ELKVEWFHNG--KPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNK 384
G + N + + V Y C A++
Sbjct: 130 --GFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS 179
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 36.8 bits (85), Expect = 0.015
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLT--PVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
PPK + L + C + DPE+K W+ +G + + +
Sbjct: 7 FPPK------PKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQY 60
Query: 360 G-----FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
V+ + + + EY C+ NK TI
Sbjct: 61 NSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTI 100
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 36.8 bits (84), Expect = 0.016
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 11/98 (11%)
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
G VL + + G C + + +V L V Q S L
Sbjct: 57 GRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL-VYAFPNQL------TVSPAALVP 109
Query: 319 GDSAHFECTLT---PVNDPELKVEWFHNGKPIFHKNRV 353
GD CT PV+ L G+ + +
Sbjct: 110 GDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQAL 146
Score = 35.6 bits (81), Expect = 0.033
Identities = 24/157 (15%), Positives = 40/157 (25%), Gaps = 12/157 (7%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G S C L D V+W + + SD G V+ + +G V
Sbjct: 22 GASRQLTCRLA-CADRGASVQWRGLDTSL-----GAVQSDTGRSVLTVRNASLSAAGTRV 75
Query: 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPK 438
C + VY Q + + + PV
Sbjct: 76 CVGSCGGRTFQHTVQLL------VYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNAL 129
Query: 439 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFS 475
+ + +L+ Q+ E + LF
Sbjct: 130 SFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFR 166
Score = 31.8 bits (71), Expect = 0.69
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 6/92 (6%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
KP+ + P +P + L ++ D ++W L +D G
Sbjct: 6 KPLQVEPPEPVVAVALGASRQLTCRLAC-ADRGASVQWRGLDTSLG-----AVQSDTGRS 59
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + G C + +
Sbjct: 60 VLTVRNASLSAAGTRVCVGSCGGRTFQHTVQL 91
Score = 31.0 bits (69), Expect = 1.2
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKL 794
G VL + + G C + + +V L V P+Q +
Sbjct: 57 GRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL-VYAFPNQLTV 102
Score = 28.3 bits (62), Expect = 8.8
Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 6/96 (6%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
+ P + V + G S RL D V+W L D
Sbjct: 3 LQVKPLQVEPPEPVVAVALGASRQLTCRLA-CADRGASVQWRGLDTSLG-----AVQSDT 56
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
G +L + +G C + + L
Sbjct: 57 GRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL 92
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 35.5 bits (81), Expect = 0.019
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD---------IAYV 369
G + +C + + + ++W + + + + + D ++ I+ V
Sbjct: 53 GGTVVLKCQVK--DHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNV 110
Query: 370 QSHDSGEYVC 379
D GEY C
Sbjct: 111 ALADEGEYTC 120
Score = 29.0 bits (64), Expect = 3.4
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 9/125 (7%)
Query: 674 PELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM------TVE 727
P+L ++ + + + G + + D ++
Sbjct: 20 PDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQT 79
Query: 728 FLYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786
+ K +RI+ V + + I + D G YTC + V+
Sbjct: 80 LYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM-PVRTAKSLVT-VL 137
Query: 787 WSPSQ 791
P +
Sbjct: 138 GIPQK 142
Score = 28.2 bits (62), Expect = 5.3
Identities = 10/106 (9%), Positives = 28/106 (26%), Gaps = 11/106 (10%)
Query: 479 PSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW------ 532
A + + + + G + + ++ D ++W
Sbjct: 21 DLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKD--HEDSSLQWSNPAQQ 78
Query: 533 --FYNGKKLPHGHRYRTFHD-FGIVILDILYCYEENSGVYECRATN 575
++ K+ +R + + + I + G Y C
Sbjct: 79 TLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFT 124
Score = 28.2 bits (62), Expect = 5.9
Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 17/116 (14%)
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS----------EGEIAHFEASLIPVGDQ 233
RQ PD + ++ + S G + + D
Sbjct: 9 AAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDS 68
Query: 234 TM------TVEFLYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATN 282
++ + K +RI+ V + + I + D G YTC
Sbjct: 69 SLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFT 124
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 37.3 bits (86), Expect = 0.020
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
Query: 274 GVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVND 333
G + K Q E S QP +++ L D A F C + +
Sbjct: 268 GEEKKKEKEKEEQEERETKTPEC-PSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDL 326
Query: 334 PELKVEWFHNGKPIFHK 350
+ + W GK
Sbjct: 327 KDAHLTWEVAGKVPTGG 343
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 34.1 bits (78), Expect = 0.040
Identities = 15/81 (18%), Positives = 19/81 (23%), Gaps = 20/81 (24%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHK-----------------NRVKMVSDF-- 359
G CT + W P +R +
Sbjct: 12 GHPVTLPCTYST-YRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISE 70
Query: 360 GFVVMDIAYVQSHDSGEYVCR 380
G V + I DSG Y CR
Sbjct: 71 GDVSLTIENSVESDSGLYCCR 91
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 35.7 bits (82), Expect = 0.041
Identities = 25/147 (17%), Positives = 41/147 (27%), Gaps = 11/147 (7%)
Query: 239 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
L+ + A R + V I G Y+C +E S L+ V
Sbjct: 38 QLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVT 97
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKP-IFHKNRVKMVS 357
P + H + G+ F C L G+ + K+ +
Sbjct: 98 EMYDTPTLSVHPG--PEVISGEKVTFYCRLDTATS---MFLLLKEGRSSHVQRGYGKVQA 152
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNK 384
+F + V + G Y C
Sbjct: 153 EF-----PLGPVTTAHRGTYRCFGSYN 174
Score = 31.0 bits (70), Expect = 1.4
Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 4/87 (4%)
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
+ PK + + C ++ + G F +R K
Sbjct: 2 QQTLPKPFIWAEPHFMVPKEKQVTICCQGNY---GAVEYQLHFEGSL-FAVDRPKPPERI 57
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYG 386
V I + S +G+Y C
Sbjct: 58 NKVKFYIPDMNSRMAGQYSCIYRVGEL 84
Score = 30.6 bits (69), Expect = 1.6
Identities = 13/62 (20%), Positives = 19/62 (30%)
Query: 728 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVW 787
L+ + A R + V I G Y+C +E S L+ VV
Sbjct: 38 QLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVT 97
Query: 788 SP 789
Sbjct: 98 EM 99
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 35.6 bits (82), Expect = 0.042
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLEC--------VDKSKGQPPKFTSHIKSLE 314
L + ED+ Y C + + D PP+ S
Sbjct: 102 LTVTSAHPEDSSFYIC-SARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEA 160
Query: 315 GLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI 347
+ A C T +++ W+ NGK +
Sbjct: 161 EISHTQKATLVCLATGFYPDHVELSWWVNGKEV 193
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 34.0 bits (78), Expect = 0.044
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 21/83 (25%)
Query: 319 GDSAHFECTLTPVNDPELK---VEWFHNGKP----IFHKN---------RVKMVSD-FGF 361
GDS C L N + W +G+ +FH+ R++ V+ G
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 362 VVMD----IAYVQSHDSGEYVCR 380
+ + + ++ D G Y C
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCL 97
Score = 31.0 bits (70), Expect = 0.53
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHA-----FGMVVLEILGTKIEDTGVYTCR-ATNKW 284
+M V G S R+ V A L + G ++ED G YTC T
Sbjct: 44 ESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQ 103
Query: 285 GQAEISVNL 293
G + + L
Sbjct: 104 GSRSVDIWL 112
Score = 31.0 bits (70), Expect = 0.53
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 720 GDQTMTVEFLYNGKPIEASHRIRTVHA-----FGMVVLEILGTKIEDTGVYTCR-ATNKW 773
+M V G S R+ V A L + G ++ED G YTC T
Sbjct: 44 ESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQ 103
Query: 774 GQAEISVNL 782
G + + L
Sbjct: 104 GSRSVDIWL 112
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 35.4 bits (81), Expect = 0.050
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 263 LEILGTKIEDTGVYTCRA--TNKWGQAEISVNLECV--DKSKGQPPKFTSHIKSLEGLKD 318
L + + T Y C + + + Q V D PP+ S +
Sbjct: 78 LTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISH 137
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPI 347
A C T +++ W+ NGK +
Sbjct: 138 TQKATLVCLATGFYPDHVELSWWVNGKEV 166
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 34.8 bits (80), Expect = 0.051
Identities = 30/168 (17%), Positives = 45/168 (26%), Gaps = 18/168 (10%)
Query: 226 SLIPVGDQ--------TMTVEF-LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY 276
++P Q VE+ L+ + A R + V I G Y
Sbjct: 13 FMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQY 72
Query: 277 TCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL 336
+C +E S L+ V P + H + G+ F C L
Sbjct: 73 SCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE--VISGEKVTFYCRLDTATS--- 127
Query: 337 KVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNK 384
G+ H R F + V + G Y C
Sbjct: 128 MFLLLKEGRSS-HVQRGYGKVQAEFP---LGPVTTAHRGTYRCFGSYN 171
Score = 31.7 bits (72), Expect = 0.56
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 9/84 (10%)
Query: 715 SLIPVGDQ--------TMTVEF-LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY 765
++P Q VE+ L+ + A R + V I G Y
Sbjct: 13 FMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQY 72
Query: 766 TCRATNKWGQAEISVNLECVVWSP 789
+C +E S L+ VV
Sbjct: 73 SCIYRVGELWSEPSNLLDLVVTEM 96
Score = 29.8 bits (67), Expect = 2.7
Identities = 8/70 (11%), Positives = 18/70 (25%), Gaps = 8/70 (11%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGK--PIFHKNRVKMVSDFGFVVMDIAYVQSHDSGE 376
C ++ + G + + ++ F I + S +G+
Sbjct: 18 EKQVTICCQGNY---GAVEYQLHFEGSLFAVDRPKPPERINKVKFY---IPDMNSRMAGQ 71
Query: 377 YVCRAWNKYG 386
Y C
Sbjct: 72 YSCIYRVGEL 81
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 33.8 bits (77), Expect = 0.058
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 24/101 (23%)
Query: 319 GDSAHFECTLT--PVNDPELKVEW---------------FHNGKPIFH-----KNRVKMV 356
G C+ ++ W + G+P K R++ V
Sbjct: 14 GSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWV 73
Query: 357 SD--FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
D + + I + D+G + C N + +
Sbjct: 74 GDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVT 114
Score = 28.8 bits (64), Expect = 3.0
Identities = 8/72 (11%), Positives = 21/72 (29%), Gaps = 7/72 (9%)
Query: 92 PKNDPNLKIEWIFNGKPLELGS-------RFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144
+ I G+P ++ + ++ + + D G +TC
Sbjct: 42 EGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVK 101
Query: 145 NLAGETFTSTTI 156
N ++ +
Sbjct: 102 NPPDIVGKTSQV 113
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 35.2 bits (81), Expect = 0.065
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 13/95 (13%)
Query: 263 LEILGTKIEDTGVYTC---------RATNKWGQ-AEISVNLECVDKSKGQPPKFTSHIKS 312
L + D+G Y C T +G+ + ++V D +K PP+ S
Sbjct: 76 LSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVV---EDLNKVFPPEVAVFEPS 132
Query: 313 LEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI 347
+ A C T +++ W+ NGK +
Sbjct: 133 EAEISHTQKATLVCLATGFFPDHVELSWWVNGKEV 167
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 33.3 bits (76), Expect = 0.071
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 22/101 (21%)
Query: 311 KSLEGLKDGDSAHFECTLT----PVNDPELKVEWFHNGK----PIFHKNRVKMVSDF--- 359
K+++GL G C + + W+++ + H K+V
Sbjct: 8 KNVQGLS-GSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRG 66
Query: 360 ----------GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFT 390
+ + ++ DSG Y R +
Sbjct: 67 RAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWL 107
Score = 31.4 bits (71), Expect = 0.42
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 93 KNDPNLKIEWIFNGKPLELGSRFK------TTADFGFVTLDLTEVYDRDQGIYTCRAWNL 146
+ + I +G P + RF+ D L L ++ D G Y R
Sbjct: 42 YDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS 101
Query: 147 AGETFTS 153
+
Sbjct: 102 DSNRWLD 108
Score = 29.4 bits (66), Expect = 1.9
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+ L + K ED+G Y R + V
Sbjct: 77 KVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVK 110
Score = 29.4 bits (66), Expect = 1.9
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
+ L + K ED+G Y R + V
Sbjct: 77 KVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVK 110
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 33.4 bits (76), Expect = 0.084
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 19/81 (23%)
Query: 319 GDSAHFECTLTPVNDPE-LKVEWF--HNGKPIFH---------------KNRVKMVSDF- 359
+C P+ + V+W H + + R+K+
Sbjct: 16 KGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVP 75
Query: 360 GFVVMDIAYVQSHDSGEYVCR 380
G V + I +Q D Y C
Sbjct: 76 GDVSLQINTLQMDDRNHYTCE 96
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 34.1 bits (78), Expect = 0.12
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
VL +TC A + ++ L P+ E L +
Sbjct: 67 VLPGCAEPWNHGKTFTCTAAYPESKTPLTATL--SKSGNTFRPEVHLLPPPSEELALNEL 124
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPI 347
C + ++ V W + +
Sbjct: 125 VTLTCLARGFSPKDVLVRWLQGSQEL 150
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 34.1 bits (78), Expect = 0.14
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 263 LEILGTKIEDTGVYTC-------RATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEG 315
L + ED+ Y C +G LE D PP+ S
Sbjct: 79 LTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLE--DLKNVFPPEVAVFEPSEAE 136
Query: 316 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPI 347
+ A C T +++ W+ NGK +
Sbjct: 137 ISHTQKATLVCLATGFYPDHVELSWWVNGKEV 168
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 33.8 bits (77), Expect = 0.14
Identities = 11/101 (10%), Positives = 24/101 (23%), Gaps = 13/101 (12%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE-LKVEWFHNGKPIFHKNRVKMVSDF- 359
PP S L A C + + L V W + + + F
Sbjct: 18 IPP-------SPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFN 70
Query: 360 ----GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396
+ ++ + C ++ ++
Sbjct: 71 GTYSASSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYR 111
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 33.8 bits (77), Expect = 0.17
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPV--NDPELKVEWFHNGKPIFHKNRVKMVSDF 359
PP + L + C + V +DP++++ WF N + D+
Sbjct: 15 FPPNIK------DVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDY 68
Query: 360 GFV-----VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ I + E+ C+ NK TI
Sbjct: 69 NSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTI 108
Score = 29.5 bits (66), Expect = 3.2
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
L I + C+ NK + I + K + P+ E L
Sbjct: 77 TLPIQHQDWMSGKEFKCKVNNKDLPSPIERTI-SKIKGLVRAPQVYILPPPAEQLSRK-- 133
Query: 322 AHFECTLT-PVND---PELKVEWFHNGKPI 347
+ +LT V ++ VEW NG
Sbjct: 134 ---DVSLTCLVVGFNPGDISVEWTSNGHTE 160
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 33.8 bits (77), Expect = 0.18
Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISV---NLECVDKSKGQ-PPKFTSHIKSLEGLKD 318
+ + ++ED+ +Y C ++ +WG + L ++ + PPK + S + +
Sbjct: 77 MNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIAN 136
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPI 347
A C +++ W+ NGK +
Sbjct: 137 KQKATLVCLARGFFPDHVELSWWVNGKEV 165
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 33.5 bits (76), Expect = 0.22
Identities = 38/256 (14%), Positives = 72/256 (28%), Gaps = 38/256 (14%)
Query: 97 NLKIEWIFNGKPLELGSRFKTTADFGFV-----TLDLTEVYDRDQGIYTCRAWNLAGETF 151
++I W+ +G+ +++ +T G + L L++ + YTC+
Sbjct: 40 TIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFE 99
Query: 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
ST + + L +R+ P D P + T +
Sbjct: 100 DSTKKCADSNPRGVSAYLSRPSPFDL--------FIRKSPTITCLVVDLAPSKGTVQLTW 151
Query: 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 271
+ PV T E NG S L +
Sbjct: 152 SRASGK-----------PVNHSTRKEEKQRNGTLTVTS------------TLPVGTRDWI 188
Query: 272 DTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPV 331
+ Y CR T+ + + + P + + E D C +
Sbjct: 189 EGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYA--FATPEWPGSRDKRTLACLIQNF 246
Query: 332 NDPELKVEWFHNGKPI 347
++ V+W HN +
Sbjct: 247 MPEDISVQWLHNEVQL 262
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 32.9 bits (75), Expect = 0.30
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
L I+ + + CR + A I + K + + P+ + E + D
Sbjct: 69 ELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTI-SKTKGRPKAPQVYTLPPPKEQMA-KDK 126
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPI 347
C +T ++ VEW NG+P
Sbjct: 127 VSLTCMITDFFPEDITVEWESNGQPA 152
Score = 29.4 bits (66), Expect = 3.9
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 67 VFIVPLKPEFKLGEAQPLHLEAQV------EPKNDPNLKIEWIFNGKPLELGSRFKTTAD 120
VFI P KP+ + + L +V K+DP ++ W + +
Sbjct: 4 VFIFPPKPK----DVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQ 59
Query: 121 F-----GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
F L + + + CR + A TI
Sbjct: 60 FNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTI 100
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 33.4 bits (76), Expect = 0.31
Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 12/95 (12%)
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG-----QPPKFTSHIKSLEGL 316
VL +TC A + ++ L + PP E L
Sbjct: 310 VLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPP-------PSEEL 362
Query: 317 KDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN 351
+ C + ++ V W + + +
Sbjct: 363 ALNELVTLTCLARGFSPKDVLVRWLQGSQELPREK 397
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 32.7 bits (74), Expect = 0.33
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 263 LEILGTKIEDTGVYTCRATNKWG----QAEISVNLECVDKSKG-QPPKFTSHIKSLEGLK 317
L+I T +ED+ VY C ++ L ++ K PP+ S +
Sbjct: 78 LKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEIS 137
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPI 347
A C T +++ W+ NGK +
Sbjct: 138 HTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 31.4 bits (71), Expect = 0.33
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 18/87 (20%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHN------------GKPIFH---KNRVKMVSDFGFVV 363
G + + P+ ++ W H K IF K RV + + G
Sbjct: 18 GSNVTLKIHKDPLGPYR-RITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGA-- 74
Query: 364 MDIAYVQSHDSGEYVCRAWNKYGEDFT 390
+ I+ V+ D G Y R + +
Sbjct: 75 LHISNVRKEDKGTYYMRVLRETENELK 101
Score = 28.3 bits (63), Expect = 3.5
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 93 KNDPNLKI-EWIFNGKPLELGSRFKTTADFGFVTLDLT--EVYDRDQGIYTCR 142
+ N KI E+ +N S FK L V D+G Y R
Sbjct: 39 LHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYMR 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.34
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 8/27 (29%)
Query: 178 EK--IQDLEESLRRQPAGVPDSEDGRP 202
EK ++ L+ SL+ DS P
Sbjct: 18 EKQALKKLQASLKLY---ADDSA---P 38
Score = 28.8 bits (63), Expect = 5.0
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 80 EAQPLH-LEAQVE---PKNDPNLKIE 101
E Q L L+A ++ + P L I+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 32.9 bits (75), Expect = 0.38
Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 1/81 (1%)
Query: 267 GTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFEC 326
TK++ + + + P+ + + C
Sbjct: 206 NTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQ-VYTLPPSRDELTKNQVSLTC 264
Query: 327 TLTPVNDPELKVEWFHNGKPI 347
+ ++ VEW NG+P
Sbjct: 265 LVKGFYPSDIAVEWESNGQPE 285
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 32.6 bits (74), Expect = 0.40
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 13/95 (13%)
Query: 263 LEILGTKIEDTGVYTCRATNK---------WGQ-AEISVNLECVDKSKGQPPKFTSHIKS 312
L + + C ++ +G+ ++++V D PP+ S
Sbjct: 76 LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVL---EDLKNVFPPEVAVFEPS 132
Query: 313 LEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI 347
+ A C T +++ W+ NGK +
Sbjct: 133 EAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 31.6 bits (71), Expect = 0.71
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQ-VEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
V ++PL P +GE L P+ +L + + + L S
Sbjct: 88 RPDRVELMPLPPWQPVGENFTLSCRVPGAGPR--ASLTLTLLRGAQELIRRSFAGEPPRA 145
Query: 122 GFVTLDLTEVYDR--DQGIYTCRA 143
L T + R ++CRA
Sbjct: 146 RGAVLTATVLARREDHGANFSCRA 169
Score = 29.7 bits (66), Expect = 3.0
Identities = 19/172 (11%), Positives = 39/172 (22%), Gaps = 35/172 (20%)
Query: 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSG 567
++ G S +E G R+ ++DI E
Sbjct: 14 VERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQ-----LVDI----REPET 64
Query: 568 VYECRATNKYGSDVTKASL------KCVSKT----------NLILESQLP--------EV 603
C + + + V N L ++P +
Sbjct: 65 QPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTL 124
Query: 604 EWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 653
++L ++ +L E++ + CRA
Sbjct: 125 TLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPH 176
Score = 28.5 bits (63), Expect = 7.6
Identities = 11/76 (14%), Positives = 16/76 (21%), Gaps = 9/76 (11%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G S C+ +E R ++DI + V
Sbjct: 17 GGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLA-----RQLVDI----REPETQPV 67
Query: 379 CRAWNKYGEDFTRATI 394
C R I
Sbjct: 68 CFFRCARRTLQARGLI 83
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 30.7 bits (69), Expect = 0.77
Identities = 7/58 (12%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 252 IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSH 309
I+ + + D Y C ++V + +D + + +S
Sbjct: 66 IKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVT-IDPAPVTQEETSSS 122
Score = 30.3 bits (68), Expect = 1.1
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 741 IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYS 797
I+ + + D Y C ++V + + +P + S
Sbjct: 66 IKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVT-IDPAPVTQEETSS 121
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 31.5 bits (71), Expect = 1.3
Identities = 18/165 (10%), Positives = 36/165 (21%), Gaps = 11/165 (6%)
Query: 224 EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 283
E + + + N I V + TC
Sbjct: 29 EKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIA---SLNIQLTCNILTF 85
Query: 284 WGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHN 343
+ + G PP+ ++ + C + L+ +
Sbjct: 86 GQLEQNVYG---ITIISGLPPEKPKNLS----CIVNEGKKMRCEWDGGRETHLETNFTLK 138
Query: 344 GKPIFHKNRVKMVSDFGFVVMDIAYVQSH-DSGEYVCRAWNKYGE 387
+ HK + Y + + E A N G+
Sbjct: 139 SEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGK 183
>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome,
cellulose degradation, hydrolase, glycosidase; 1.98A
{Clostridium thermocellum} SCOP: b.18.1.30
Length = 178
Score = 30.2 bits (67), Expect = 1.5
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Query: 431 APVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAA 490
+ A + I++ + G H+ +TP + + FS+F QP Q
Sbjct: 77 SVDGSANEIRFMIAEKSINGVGDGEHWVYSITPDSSWKTIEIPFSSFRRRLDYQPPGQDM 136
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFE 517
I I +S F
Sbjct: 137 SGTLDLDNIDSIH--FMYANNKSGKFV 161
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 29.8 bits (66), Expect = 1.6
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786
L + +D G Y C+ + E ++ + VV
Sbjct: 94 LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVV 128
Score = 28.7 bits (63), Expect = 4.5
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
L + +D G Y C+ + E ++ + V
Sbjct: 94 LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 127
>1mk0_A Intron-associated endonuclease 1; alpha/beta fold, catalytic
domain, DNA-binding surface, hydrolase; HET: CIT; 1.60A
{Enterobacteria phage T4} SCOP: d.226.1.1 PDB: 1ln0_A
Length = 97
Score = 28.9 bits (65), Expect = 1.7
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 377 YVCRAWNKYGEDFT 390
+ R++NK+G F
Sbjct: 44 KLQRSFNKHGNVFE 57
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 30.3 bits (68), Expect = 2.0
Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 13/146 (8%)
Query: 241 YNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSK 300
NG+ A ++ L I ++ED+G Y C A + + + +
Sbjct: 55 ENGRLKSAFDSKERRYST----LHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQ 110
Query: 301 G-----QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM 355
G +P S+ +K+G + C + E+ + + K + + +
Sbjct: 111 GTQVTVEPKSQPPAKPSVFIMKNGTNV--ACLVKDFYPKEVTISLRSSKKIVEFDPAIVI 168
Query: 356 VSDFGFVVMDIAYVQSHDSGEYVCRA 381
+ + + +S C
Sbjct: 169 SPSGKYSAVKLGQYGDSNS--VTCSV 192
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 28.4 bits (63), Expect = 2.2
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 97 NLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
N I W+ L T D G LD +GIY C ++ + ++ +
Sbjct: 17 NTSITWVEGTVGTLLSD--ITRLDLGKRILD-------PRGIYRCNGTDIYKDKESTVQV 67
Query: 157 Y 157
+
Sbjct: 68 H 68
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 29.9 bits (67), Expect = 2.3
Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 7/147 (4%)
Query: 239 FLY-NGKPIEASHRIRTVHAFG-MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
L+ G + I H I + G Y C + ++S + +
Sbjct: 39 LLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPL 98
Query: 297 DKS-KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM 355
D G K + + + G++ C+ D G+ +
Sbjct: 99 DIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSYD---MYHLSREGEAHERRLPAGP 155
Query: 356 VSDFGFVVMDIAYVQSHDSGEYVCRAW 382
+ F D + G Y C
Sbjct: 156 KVNGTFQA-DFPLGPATHGGTYRCFGS 181
>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna
pacos} PDB: 2xv6_B 2xxc_B 2xxm_B
Length = 121
Score = 29.0 bits (66), Expect = 2.3
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 269 KIEDTGVYTC-RATNKWGQ 286
K EDT +Y C + + WGQ
Sbjct: 89 KPEDTAMYYCKASGSSWGQ 107
Score = 29.0 bits (66), Expect = 2.3
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 758 KIEDTGVYTC-RATNKWGQ 775
K EDT +Y C + + WGQ
Sbjct: 89 KPEDTAMYYCKASGSSWGQ 107
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 30.8 bits (69), Expect = 2.4
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 242 NGKPIEASHRIRTVHAFGMV----VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
+ + A + R L I+ + + CR + A I + +
Sbjct: 385 DVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIE---KTIS 441
Query: 298 KSKGQPPKFTSHI--KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKP 346
K+KG+P + E + D C +T ++ VEW NG+P
Sbjct: 442 KTKGRPKAPQLYTIPPPKEQMAK-DKVSLTCMITDFFPEDITVEWQWNGQP 491
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 29.9 bits (67), Expect = 2.5
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEI------SVNLECVDKSKGQPPKFTSHIKSLEGL 316
L + T VY C + G + D + PPK + S +
Sbjct: 74 LILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEI 133
Query: 317 KDGDSAHFECTLTPVNDPELKVEWFHNGKPI 347
+ A C +++ W+ NGK +
Sbjct: 134 ANKQKATLVCLARGFFPDHVELSWWVNGKEV 164
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 29.0 bits (64), Expect = 2.6
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 20/106 (18%)
Query: 310 IKSLEGLKDGDSAHFECTLT---PVNDPELKVEWFHNGKPIFH----KNRVKMVSDF--- 359
KS+E D+ C +T N E+ V+W G+ I+ N+ + +DF
Sbjct: 7 TKSVEFTFGNDTVVIPCFVTNMEAQNTTEVYVKWKFKGRDIYTFDGALNKSTVPTDFSSA 66
Query: 360 ---------GFVVMDIAYVQSHD-SGEYVCRAWNKYGEDFTRATIK 395
G + + + +G Y C E T +K
Sbjct: 67 KIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELTREGETIIELK 112
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 28.8 bits (64), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 263 LEILGTKIEDTGVYTCR-ATNKWGQAEISVNL 293
L + G +ED G YTC AT G L
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGMTWL 126
Score = 28.8 bits (64), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 752 LEILGTKIEDTGVYTCR-ATNKWGQAEISVNL 782
L + G +ED G YTC AT G L
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGMTWL 126
Score = 27.6 bits (61), Expect = 8.6
Identities = 17/95 (17%), Positives = 21/95 (22%), Gaps = 33/95 (34%)
Query: 319 GDSAHFECTLTPVNDPE--LKVEWFHNGKP-------IFH-------------KNRVKMV 356
G + C L P V W P FH R+ V
Sbjct: 17 GGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFV 76
Query: 357 SDFGFVVMD-----------IAYVQSHDSGEYVCR 380
S D + + D G Y C
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCE 111
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold,
antibody, immune system; NMR {Homo sapiens}
Length = 376
Score = 29.9 bits (66), Expect = 3.6
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQP-PKFTSHIKSLEGLKDGD 320
L I+ + + CR + A I + K+KG+P I + D
Sbjct: 234 ELPIMHQDWLNGKEFKCRVNSAAFPAPIEK---TISKTKGRPKAPQLYTIPPPKEQMAKD 290
Query: 321 SAHFECTLTPVNDPELKVEWFHNGKPI 347
C +T ++ VEW NG+P
Sbjct: 291 KVSLTCMITDFFPEDITVEWQWNGQPA 317
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 27.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Query: 520 LTPVTDPDLVVEWFYNGKKLPHGH-RYRTFHDFGIVILDILYCYEENSGVYECRATNK 576
LT D D ++W NG++LP H ++ DF V E+SG Y C
Sbjct: 19 LTCPLDSDENLKWEKNGQELPQKHDKHLVLQDFSEV---------EDSGYYVCYTPAS 67
Score = 27.7 bits (61), Expect = 4.2
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 601 PEVEWFYNGKKLPHGH-RYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
++W NG++LP H ++ DF V E+SG Y C
Sbjct: 27 ENLKWEKNGQELPQKHDKHLVLQDFSEV---------EDSGYYVCYTPAS 67
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 28.1 bits (63), Expect = 4.5
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVW 787
L I ++D+G Y C+ +++G + +
Sbjct: 68 LRINDLTVKDSGTYRCKPESRYGSYDAVCAALNDQY 103
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 27.8 bits (62), Expect = 6.6
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 366 IAYVQSHDSGEYVCRAWNKYG-EDFTRATIKCFGKGGVYLDSLQP 409
I+ ++ DSG Y C+A+ + ED G +
Sbjct: 70 ISDLRVEDSGTYKCQAFYVFFAEDVGSNKGAIIGLMVGGVVIGGE 114
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 29.1 bits (66), Expect = 6.7
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 177 LEKI-QDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD 232
L + Q+LE + + +P SE+ R Q T FQ + + + + + +
Sbjct: 51 LVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGAN 107
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 27.4 bits (61), Expect = 6.9
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ + + ++ D G+Y C T V +
Sbjct: 72 FIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVN 107
Score = 27.4 bits (61), Expect = 6.9
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ + + ++ D G+Y C T V +
Sbjct: 72 FIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVN 107
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel,
unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP:
b.45.1.1
Length = 184
Score = 28.2 bits (62), Expect = 7.8
Identities = 6/43 (13%), Positives = 17/43 (39%)
Query: 516 FEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDI 558
+T V + ++ + + P + + H++ L+I
Sbjct: 116 LSGTVTKVNETEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNI 158
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 27.5 bits (61), Expect = 7.8
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 252 IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ G V+ I +D+G Y C V+LE
Sbjct: 66 LTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLE 108
Score = 27.5 bits (61), Expect = 7.8
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 741 IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ G V+ I +D+G Y C V+LE
Sbjct: 66 LTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLE 108
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 28.5 bits (64), Expect = 8.0
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 364 MDIAYVQSHDSGEYVCRAWNKYGEDF---TRATIK 395
+ I+ +++ D+ Y C+ + Y F T+ +K
Sbjct: 233 LTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK 267
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV,
immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Length = 264
Score = 28.5 bits (64), Expect = 8.2
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 364 MDIAYVQSHDSGEYVCRAWNKYGEDF---TRATIKCFGKGGVYLDSLQPESLARIRELEN 420
+ I V++ D Y C+ ++ Y F TR IK G G S S E
Sbjct: 83 LTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSE--- 139
Query: 421 AQGQQP 426
Q QQ
Sbjct: 140 VQLQQS 145
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth
factor-transferase), FLT-1 receptor, cystine
glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB:
1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Length = 95
Score = 27.0 bits (59), Expect = 8.3
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 316 LKDGDSAHFECTLTPVNDPELKVEW--FHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHD 373
+ +G C +T P + V F I R+ S GF+ I+ +
Sbjct: 17 MTEGRELVIPCRVT---SPNITVTLKKFPLDTLIPDGKRIIWDSRKGFI---ISNATYKE 70
Query: 374 SGEYVCRA 381
G C A
Sbjct: 71 IGLLTCEA 78
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 8.4
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 21/59 (35%)
Query: 570 ECRATNKYG-SDVTKASLKCVSKTNLILESQL----PEVEWFYNGKKLPHGHRYRTFHD 623
EC+ ++ + C + L+L +L E W RTF +
Sbjct: 26 ECKVYPPKIVERFSEGDVVC-ALCGLVLSDKLVDTRSE--W-------------RTFSN 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.403
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,396,147
Number of extensions: 764746
Number of successful extensions: 5419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3947
Number of HSP's successfully gapped: 1549
Length of query: 805
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 704
Effective length of database: 3,881,772
Effective search space: 2732767488
Effective search space used: 2732767488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)