BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2167
         (79 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
           Thermophilus Hb8
 pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
           Thermophilus Hb8
          Length = 496

 Score = 28.5 bits (62), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 28  EALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLVYTQ---QNFLDAPTK 77
           E   ++D +   LLY L E R   G ++ YD       YT+   QN    P K
Sbjct: 309 EEFATADLIENALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNLGKTPRK 361


>pdb|1T5Y|A Chain A, Crystal Structure Of Northeast Structural Genomics
           Consortium Target Hr2118: A Human Homolog Of
           Saccharomyces Cerevisiae Nip7p
          Length = 190

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 2   MDERSPMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVC 61
           +D  +P AKY    VW    I    +++ +  +HV+++ L  ++E+  +   ++ Y    
Sbjct: 96  LDYLAPYAKYK---VW----IKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSXAD 148

Query: 62  VPLVY 66
           +PL +
Sbjct: 149 IPLGF 153


>pdb|1SQW|A Chain A, Crystal Structure Of Kd93, A Novel Protein Expressed In
           The Human Pro
          Length = 188

 Score = 26.6 bits (57), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 2   MDERSPMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVC 61
           +D  +P AKY    VW    I    +++ +  +HV+++ L  ++E+  +   ++ Y    
Sbjct: 86  LDYLAPYAKYK---VW----IKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMAD 138

Query: 62  VPLVY 66
           +PL +
Sbjct: 139 IPLGF 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.133    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,146,063
Number of Sequences: 62578
Number of extensions: 57413
Number of successful extensions: 94
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 6
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)