BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2167
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NFU1|BEST2_HUMAN Bestrophin-2 OS=Homo sapiens GN=BEST2 PE=2 SV=1
Length = 509
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 6 SPMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLV 65
S KYW+P VW +N+ +AR+E I + ++ LL EL+ R K G + YD + VPLV
Sbjct: 176 SSYNKYWVPCVWFSNLAAQARREGRIRDNSALKLLLEELNVFRGKCGMLFHYDWISVPLV 235
Query: 66 YTQ 68
YTQ
Sbjct: 236 YTQ 238
>sp|Q8NFU0|BEST4_HUMAN Bestrophin-4 OS=Homo sapiens GN=BEST4 PE=2 SV=1
Length = 473
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 5 RSPMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPL 64
+S KYW+P VW TN+ +AR++ I D + LL EL+++R K + YD + +PL
Sbjct: 175 KSDFNKYWVPCVWFTNLAAQARRDGRIRDDIALCLLLEELNKYRAKCSMLFHYDWISIPL 234
Query: 65 VYTQ 68
VYTQ
Sbjct: 235 VYTQ 238
>sp|Q8N1M1|BEST3_HUMAN Bestrophin-3 OS=Homo sapiens GN=BEST3 PE=2 SV=1
Length = 668
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 17/91 (18%)
Query: 5 RSPMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPL 64
+SP KYW+P +W N+ +AR E I +Q+L+ E++ +R + YD V +PL
Sbjct: 175 KSPHLKYWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPL 234
Query: 65 VYTQ----------------QNFLDAPTKHY 79
VYTQ + FLD PTK Y
Sbjct: 235 VYTQVVTLAVYTFFFACLIGRQFLD-PTKGY 264
>sp|Q6H1V1|BEST3_MOUSE Bestrophin-3 OS=Mus musculus GN=Best3 PE=2 SV=1
Length = 669
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 17/91 (18%)
Query: 5 RSPMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPL 64
+SP KYW+P +W N+ +AR E I +Q+L+ E++ +R + YD V +PL
Sbjct: 175 KSPHLKYWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPL 234
Query: 65 VYTQ----------------QNFLDAPTKHY 79
VYTQ + FLD PTK Y
Sbjct: 235 VYTQVVTLAVYTFFFACLIGRQFLD-PTKGY 264
>sp|Q8BGM5|BEST2_MOUSE Bestrophin-2 OS=Mus musculus GN=Best2 PE=2 SV=1
Length = 508
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 6 SPMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLV 65
S KYW+P VW +++ +AR+E I + ++ LL EL+ R K G + YD + +PLV
Sbjct: 176 SSYNKYWVPCVWFSSLAAQARREGRIRDNSALKLLLEELNVFRSKCGMLFHYDWISIPLV 235
Query: 66 YTQ 68
YTQ
Sbjct: 236 YTQ 238
>sp|Q23369|YHDI_CAEEL Uncharacterized protein ZC518.1 OS=Caenorhabditis elegans
GN=ZC518.1 PE=2 SV=1
Length = 499
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 5 RSPMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPL 64
+ P ++YW + W+ N++ +K+ + S +++ ++ E+ + R L S++ YD V VPL
Sbjct: 176 KDPYSRYWTSIQWSLNLVYECQKKGKVDSYYLMNKIVDEIGKFRHGLASLLKYDWVPVPL 235
Query: 65 VYTQQNFL 72
VY Q FL
Sbjct: 236 VYPQVIFL 243
>sp|Q8WMR7|BEST1_PIG Bestrophin-1 (Fragment) OS=Sus scrofa GN=BEST1 PE=1 SV=1
Length = 428
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 7 PMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLVY 66
P +WMP VW N+ +A I ++Q+LL E++ R + G + +YD + VPLVY
Sbjct: 24 PHNSFWMPWVWFANLSTKAWIGGRIRDPVLLQSLLDEMNTLRTQCGHLYAYDWISVPLVY 83
Query: 67 TQ 68
TQ
Sbjct: 84 TQ 85
>sp|P34672|YO22_CAEEL Uncharacterized protein ZK688.2 OS=Caenorhabditis elegans
GN=ZK688.2 PE=3 SV=1
Length = 632
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 9 AKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLVYTQ 68
+KYW+P WA ++ ARK+ LI SD+ + E+ + R L I +YD V +P++Y Q
Sbjct: 179 SKYWVPFQWAFSLTYEARKKGLIESDYYQVVVQDEIKKFRTGLAWICNYDWVPIPIMYPQ 238
>sp|O76090|BEST1_HUMAN Bestrophin-1 OS=Homo sapiens GN=BEST1 PE=1 SV=1
Length = 585
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 7 PMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLVY 66
P +W+P VW N+ +A I ++Q+LL E++ R + G + +YD + +PLVY
Sbjct: 177 PHNMFWVPWVWFANLSMKAWLGGRIRDPILLQSLLNEMNTLRTQCGHLYAYDWISIPLVY 236
Query: 67 TQ 68
TQ
Sbjct: 237 TQ 238
>sp|Q6UY87|BEST1_MACFA Bestrophin-1 OS=Macaca fascicularis GN=BEST1 PE=2 SV=1
Length = 585
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 7 PMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLVY 66
P +W+P VW N+ +A I ++Q+LL E++ R + G + +YD + +PLVY
Sbjct: 177 PHNMFWVPWVWFANLSMKAWLGGRIRDPILLQSLLNEMNTLRTQCGHLYAYDWISIPLVY 236
Query: 67 TQ 68
TQ
Sbjct: 237 TQ 238
>sp|O88870|BEST1_MOUSE Bestrophin-1 OS=Mus musculus GN=Best1 PE=2 SV=3
Length = 551
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 7 PMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLVY 66
P +W+P VW N+ +A I ++Q+L+ E+ R + G + +YD + +PLVY
Sbjct: 177 PHNTFWVPWVWFANLSMKAYLGGRIRDTVLLQSLMNEVCTLRTQCGQLYAYDWISIPLVY 236
Query: 67 TQ 68
TQ
Sbjct: 237 TQ 238
>sp|Q19978|YV6L_CAEEL Uncharacterized protein F32G8.4 OS=Caenorhabditis elegans
GN=F32G8.4 PE=3 SV=3
Length = 405
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 2 MDERSPMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVC 61
M+ +P K+++P++W N+I + +++ +I S + LL ++ +R + YD +
Sbjct: 162 MNTDAPHGKWFIPILWIVNLIKKQKQKGIIDSIQ-MDMLLKQVYSYRDGFAMLFVYDWIK 220
Query: 62 VPLVYTQ 68
+PLVYTQ
Sbjct: 221 IPLVYTQ 227
>sp|P34577|YNX4_CAEEL Uncharacterized protein T20G5.4 OS=Caenorhabditis elegans
GN=T20G5.4 PE=3 SV=2
Length = 456
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 10 KYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLVY 66
KY++P WA ++ ARKE LI D+ V + ++ + R L + +YD V +P++Y
Sbjct: 180 KYFLPFNWAWALVYNARKEGLIEGDYYVTVISEDIKKFRTGLAWVCNYDWVPLPIIY 236
>sp|P34319|YKT8_CAEEL Uncharacterized protein C07A9.8 OS=Caenorhabditis elegans
GN=C07A9.8 PE=3 SV=2
Length = 453
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 5 RSPMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPL 64
+S KYW+ WA ++N A+ E I D+ + E+S+ R L ++ YD V +PL
Sbjct: 218 KSRYQKYWVSFNWALELLNVAKTEKSIDGDNARNAIAQEISKFRSALTTVSMYDWVPIPL 277
Query: 65 VYTQ 68
+Y Q
Sbjct: 278 MYPQ 281
>sp|Q21973|BEST1_CAEEL Bestrophin-1 OS=Caenorhabditis elegans GN=R13.3 PE=2 SV=2
Length = 525
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 8 MAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLVYT 67
+ KY++P+ W+T ++ AR E I++D ++ + + E R+ L + +YD V +PL Y
Sbjct: 181 LQKYFVPIQWSTGLLVDARAEGKIAADLLMNEIGKHIIEFRKMLALLSNYDWVPIPLAYP 240
Query: 68 QQNFL 72
Q FL
Sbjct: 241 QVVFL 245
>sp|Q17528|YQE3_CAEEL Uncharacterized protein B0564.3 OS=Caenorhabditis elegans
GN=B0564.3 PE=3 SV=1
Length = 450
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 9 AKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLVYTQ 68
KYW+P WA + +ARK+ I SD+ + E+ R + + +YD V +PL+Y Q
Sbjct: 184 TKYWIPANWALCMTYKARKDGYIESDYFKAQMEGEIRTWRTNIEWVCNYDWVPLPLMYPQ 243
>sp|Q22566|YSV1_CAEEL Uncharacterized protein T19C3.1 OS=Caenorhabditis elegans
GN=T19C3.1 PE=3 SV=2
Length = 501
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 11 YWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLVYTQQN 70
YW+P+ WA ++ A ++ LI +++ + E R + ++I +D + +P+ Y Q
Sbjct: 204 YWVPINWANSLALVAHQQKLIDQPTAFNNVIFAIKEFRVAMETLIKFDAIPIPIAYPQVV 263
Query: 71 FL 72
FL
Sbjct: 264 FL 265
>sp|Q17529|YQE4_CAEEL Uncharacterized protein B0564.4 OS=Caenorhabditis elegans
GN=B0564.4 PE=3 SV=2
Length = 421
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 10 KYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLVYTQ 68
KYW+P WA + +ARK+ I SD+ + E+ R + + +YD V +PL+Y Q
Sbjct: 185 KYWIPANWALCMTYKARKDGYIESDYFKAQMEGEIRTWRTNIEWVCNYDWVPLPLMYPQ 243
>sp|Q94175|YCEL_CAEEL Uncharacterized protein C43G2.4 OS=Caenorhabditis elegans
GN=C43G2.4 PE=3 SV=2
Length = 399
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 2 MDERSPMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVC 61
++E SP ++ PL W +I+ A A S + V EL +R + +D VC
Sbjct: 171 INEPSPGIRWLTPLHWVQQLID-AEITAGRGSVNYVSVATNELKAYRISFRRLYCHDWVC 229
Query: 62 VPLVYTQ 68
VPLVYTQ
Sbjct: 230 VPLVYTQ 236
>sp|O45435|YV4Q_CAEEL Uncharacterized protein F32B6.9 OS=Caenorhabditis elegans
GN=F32B6.9 PE=3 SV=1
Length = 413
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 2 MDERSPMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVC 61
M + +++ PL W +I R +E + + + EL R+ L + SYD VC
Sbjct: 175 MHAENESSRWITPLHW-IQLIMRQVEEEHKPTASLFNQFVGELRIFRQSLRKLYSYDWVC 233
Query: 62 VPLVYTQ 68
VPLVYTQ
Sbjct: 234 VPLVYTQ 240
>sp|O45363|YSWJ_CAEEL Uncharacterized protein F14H3.2 OS=Caenorhabditis elegans
GN=F14H3.2 PE=3 SV=1
Length = 434
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 9 AKYWMPLVWATNIINR--ARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLVY 66
A+ ++P+ W +I+ + ++ E + D T+ E+++ +K+ + YD + +PL Y
Sbjct: 195 AESFVPITWIMSILQKFASKNEENLYYD----TVYLEITDFYKKIIKLTRYDLIPIPLAY 250
Query: 67 TQQNFL 72
Q FL
Sbjct: 251 PQAVFL 256
>sp|Q6N5R2|LPXB_RHOPA Lipid-A-disaccharide synthase OS=Rhodopseudomonas palustris (strain
ATCC BAA-98 / CGA009) GN=lpxB PE=3 SV=1
Length = 393
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 3 DERSPMAKYWMPLVWATNIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISY 57
D P+ Y P VWA RAR L DHV+ L +E +E+RR G SY
Sbjct: 120 DPSIPIVDYVSPTVWAWRP-GRARA-MLGYVDHVLALLPFEPAEYRRLQGPPCSY 172
>sp|O18304|YHS5_CAEEL Uncharacterized protein ZK849.5 OS=Caenorhabditis elegans
GN=ZK849.5 PE=3 SV=1
Length = 411
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 11 YWMPLVWATNII-NRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVPLVYTQQ 69
Y++P+ WA ++I ++ KE L + L ++ E + KL + + D + +PL Y Q
Sbjct: 188 YFLPISWALSLIEDKIDKENLANE---FTILWGQIKEWQTKLSLLRNCDYIPIPLAYPQA 244
Query: 70 NFL 72
FL
Sbjct: 245 VFL 247
>sp|Q7Z6J9|SEN54_HUMAN tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens GN=TSEN54
PE=1 SV=3
Length = 526
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 30 LISSDHVVQTLLYELSEHRRKLGSII-SYDTVCVPLVYTQQNFLDAPTKH 78
L+ +DH V L Y++ H ++LG ++ + V Y +Q LDA +H
Sbjct: 143 LLLTDHTVTFLQYQVFSHLKRLGYVVRRFQPSSVLSPYERQLNLDASVQH 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,479,786
Number of Sequences: 539616
Number of extensions: 775425
Number of successful extensions: 1415
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1390
Number of HSP's gapped (non-prelim): 28
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)