Query psy2167
Match_columns 79
No_of_seqs 104 out of 195
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 18:02:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_E Cytochrome C oxidase po 63.7 2.3 7.9E-05 27.3 0.9 22 46-67 28-49 (109)
2 1zv1_A Doublesex protein; UBA 59.4 3.8 0.00013 24.0 1.3 26 42-67 7-32 (65)
3 3v1a_A Computational design, M 58.1 5.5 0.00019 22.0 1.7 28 18-45 13-40 (48)
4 2y69_E Cytochrome C oxidase su 56.7 3.6 0.00012 27.8 0.9 22 46-67 71-92 (152)
5 1wty_A Hypothetical protein TT 55.5 15 0.00051 22.5 3.7 30 19-52 57-86 (119)
6 1yzm_A FYVE-finger-containing 49.4 12 0.00042 20.8 2.3 27 18-44 14-40 (51)
7 3fxd_A Protein ICMQ; helix bun 47.7 37 0.0013 19.3 4.5 36 18-53 13-48 (57)
8 2jz1_A Protein doublesex; sex 44.8 9.7 0.00033 23.1 1.5 27 41-67 6-32 (80)
9 1jog_A Hypothetical protein HI 44.4 25 0.00086 22.5 3.6 29 19-51 81-109 (146)
10 1z0j_B FYVE-finger-containing 42.5 17 0.00057 20.8 2.2 27 18-44 21-47 (59)
11 1z0k_B FYVE-finger-containing 42.3 17 0.00059 21.3 2.3 27 18-44 32-58 (69)
12 1wwp_A Hypothetical protein TT 40.2 47 0.0016 20.2 4.2 31 20-52 58-88 (119)
13 3cve_A Homer protein homolog 1 39.0 14 0.00048 21.8 1.5 18 39-56 53-70 (72)
14 3gp6_A Protein PAGP, protein C 36.6 7.5 0.00026 26.5 0.0 13 56-68 117-129 (163)
15 4e17_B Catenin alpha-1; four h 36.1 21 0.00071 18.9 1.8 22 35-56 12-33 (40)
16 3cvf_A Homer-3, homer protein 36.1 16 0.00056 21.9 1.5 19 38-56 58-76 (79)
17 3may_A RV0203, possible export 34.1 27 0.00093 21.8 2.4 29 35-72 64-92 (101)
18 2wh0_Q Pkcev3, protein kinase 29.8 27 0.00092 17.2 1.4 17 42-58 13-29 (31)
19 1fyj_A Multifunctional aminoac 27.4 80 0.0027 17.1 4.5 40 20-61 14-53 (57)
20 3dez_A OPRT, oprtase, orotate 24.8 55 0.0019 22.7 2.9 28 19-51 211-238 (243)
21 4e18_B Catenin alpha-1; four h 23.8 43 0.0015 19.1 1.8 21 35-55 31-51 (59)
22 2l6a_A Nacht, LRR and PYD doma 23.3 49 0.0017 20.2 2.1 22 42-63 25-46 (102)
23 2rld_A Uncharacterized protein 23.3 88 0.003 19.1 3.4 36 20-56 81-116 (121)
24 2gsc_A Putative uncharacterize 22.3 92 0.0031 19.2 3.3 36 20-56 85-120 (128)
25 3k6t_A Female germline-specifi 22.1 1.2E+02 0.0041 17.2 3.9 38 17-54 9-48 (60)
26 2xf7_A GP23.1; viral protein; 21.7 64 0.0022 17.7 2.1 15 20-34 22-36 (51)
27 1d2d_A TRNA synthetase, tRNA l 20.5 1.2E+02 0.0041 16.7 5.4 42 20-63 11-52 (59)
No 1
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=63.65 E-value=2.3 Score=27.25 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.3
Q ss_pred HHHHHhcccccCcceecchhhe
Q psy2167 46 EHRRKLGSIISYDTVCVPLVYT 67 (79)
Q Consensus 46 ~FR~~l~~L~~yDWVpIPLvY~ 67 (79)
+.|++|.+|+.||.||=|=+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~ 49 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIID 49 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHH
Confidence 6799999999999999987654
No 2
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=59.43 E-value=3.8 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcccccCcceecchhhe
Q psy2167 42 YELSEHRRKLGSIISYDTVCVPLVYT 67 (79)
Q Consensus 42 ~ei~~FR~~l~~L~~yDWVpIPLvY~ 67 (79)
|++.+.=++|-..+.|-|-..||+|.
T Consensus 7 d~Ll~~c~kLLEkf~YpWEmMpLMYV 32 (65)
T 1zv1_A 7 DVFLDYCQKLLEKFRYPWELMPLMYV 32 (65)
T ss_dssp HHHHHHHHHHHHHTTCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHhHHHHH
Confidence 56777777888889999999999994
No 3
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=58.10 E-value=5.5 Score=21.96 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy2167 18 ATNIINRARKEALISSDHVVQTLLYELS 45 (79)
Q Consensus 18 a~~ll~~ar~eg~i~~~~~~~~l~~ei~ 45 (79)
.-+.+..|++.|+++.-..++.-++||.
T Consensus 13 I~~~I~qAk~~rRfdEV~~L~~NL~EL~ 40 (48)
T 3v1a_A 13 IHSFIHQAKAAGRMDEVRTLQENLHQLM 40 (48)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3467899999999987666666666664
No 4
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=56.65 E-value=3.6 Score=27.76 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.4
Q ss_pred HHHHHhcccccCcceecchhhe
Q psy2167 46 EHRRKLGSIISYDTVCVPLVYT 67 (79)
Q Consensus 46 ~FR~~l~~L~~yDWVpIPLvY~ 67 (79)
+.|+++.+|+.||.||=|=+..
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~ 92 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIID 92 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHH
Confidence 6899999999999999987653
No 5
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=55.50 E-value=15 Score=22.51 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q psy2167 19 TNIINRARKEALISSDHVVQTLLYELSEHRRKLG 52 (79)
Q Consensus 19 ~~ll~~ar~eg~i~~~~~~~~l~~ei~~FR~~l~ 52 (79)
-..++.|.+.|.|+++ ..+-++..||+.+.
T Consensus 57 rd~~r~a~~~glI~~~----~~w~~m~~~RN~~v 86 (119)
T 1wty_A 57 RAAIRGAFQVGLLPED----PFWLEMLELRNLTN 86 (119)
T ss_dssp HHHHHHHHHHTSSCCC----HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHcCCCCcH----HHHHHHHHHhhHhc
Confidence 3568899999999876 67888899998754
No 6
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=49.37 E-value=12 Score=20.76 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2167 18 ATNIINRARKEALISSDHVVQTLLYEL 44 (79)
Q Consensus 18 a~~ll~~ar~eg~i~~~~~~~~l~~ei 44 (79)
.-+.+..|+++|+++.-..+..-+.||
T Consensus 14 I~~~I~qAk~~~r~DEV~~Le~NLrEL 40 (51)
T 1yzm_A 14 ITSFIRQAKAAGRMDEVRTLQENLRQL 40 (51)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 346789999999988543344333333
No 7
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=47.69 E-value=37 Score=19.25 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc
Q psy2167 18 ATNIINRARKEALISSDHVVQTLLYELSEHRRKLGS 53 (79)
Q Consensus 18 a~~ll~~ar~eg~i~~~~~~~~l~~ei~~FR~~l~~ 53 (79)
++..|.+|.++|--+....+..+=..|.+.|.++..
T Consensus 13 ILkaLdeaIe~GPWe~SNFLRvIGKnL~eIRd~F~~ 48 (57)
T 3fxd_A 13 ILKALNDAIEKGPWDKSNFLRVIGKKLIAIRDRFLK 48 (57)
T ss_dssp HHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhHHHHHHHHHH
Confidence 356788999999888777899999999999988764
No 8
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=44.84 E-value=9.7 Score=23.08 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcccccCcceecchhhe
Q psy2167 41 LYELSEHRRKLGSIISYDTVCVPLVYT 67 (79)
Q Consensus 41 ~~ei~~FR~~l~~L~~yDWVpIPLvY~ 67 (79)
.|++.+.=++|-..+.|-|--.||+|.
T Consensus 6 ~e~ll~~c~kLLEkF~YpWEMMpLMyV 32 (80)
T 2jz1_A 6 QDVFLDYCQKLLEKFRYPWELMPLMYV 32 (80)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 467778888888899999999999993
No 9
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=44.44 E-value=25 Score=22.53 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q psy2167 19 TNIINRARKEALISSDHVVQTLLYELSEHRRKL 51 (79)
Q Consensus 19 ~~ll~~ar~eg~i~~~~~~~~l~~ei~~FR~~l 51 (79)
-.+++.|.+.|.|.++ ..+-++..||+.+
T Consensus 81 rd~~r~a~~~GlI~d~----~~w~~m~~~RN~t 109 (146)
T 1jog_A 81 KDILREALRFGLIGDM----SKWVAYRDMRNIT 109 (146)
T ss_dssp HHHHHHHHHTTSCSCH----HHHHHHHHHHTTG
T ss_pred HHHHHHHHHcCCCCcH----HHHHHHHHHhhHh
Confidence 3578899999999887 5777888888754
No 10
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=42.50 E-value=17 Score=20.81 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2167 18 ATNIINRARKEALISSDHVVQTLLYEL 44 (79)
Q Consensus 18 a~~ll~~ar~eg~i~~~~~~~~l~~ei 44 (79)
.-+.+..|++.|+++.-..+..-+.||
T Consensus 21 I~~yI~qAk~~~R~DEV~~Le~NLrEL 47 (59)
T 1z0j_B 21 IKAYIFDAKQCGRLDEVEVLTENLREL 47 (59)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 346789999999987544444444443
No 11
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=42.35 E-value=17 Score=21.33 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2167 18 ATNIINRARKEALISSDHVVQTLLYEL 44 (79)
Q Consensus 18 a~~ll~~ar~eg~i~~~~~~~~l~~ei 44 (79)
.-+.++.|+++|+++.-..+..-+.||
T Consensus 32 I~~yI~qAk~~~r~DEV~tLe~NLrEL 58 (69)
T 1z0k_B 32 ITSFIRQAKAAGRMDEVRTLQENLRQL 58 (69)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 456789999999988544444434333
No 12
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=40.21 E-value=47 Score=20.21 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q psy2167 20 NIINRARKEALISSDHVVQTLLYELSEHRRKLG 52 (79)
Q Consensus 20 ~ll~~ar~eg~i~~~~~~~~l~~ei~~FR~~l~ 52 (79)
..++.|.+.|.|+++ ....+-++..||+.+.
T Consensus 58 d~~r~a~~~glI~~~--~~~~w~~m~~~RN~~v 88 (119)
T 1wwp_A 58 GVIRLAREVGLLRDE--EARLALGMVDDRSLTV 88 (119)
T ss_dssp HHHHHHHHHTSSCHH--HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCCch--HHHHHHHHHHHhhHhc
Confidence 568899999999865 3456788888998754
No 13
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.00 E-value=14 Score=21.82 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhccccc
Q psy2167 39 TLLYELSEHRRKLGSIIS 56 (79)
Q Consensus 39 ~l~~ei~~FR~~l~~L~~ 56 (79)
.=++||.+||.+|+.|..
T Consensus 53 ~KI~eL~elrq~LakL~~ 70 (72)
T 3cve_A 53 GKIFELTELRDNLAKLLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhcc
Confidence 346799999999998754
No 14
>3gp6_A Protein PAGP, protein CRCA; palmitoyltransferase, beta-barrel, outer membrane enzyme, PA MPD, transferase; HET: SDS; 1.40A {Escherichia coli} SCOP: f.4.1.2 PDB: 1mm4_A 1mm5_A 1thq_A*
Probab=36.61 E-value=7.5 Score=26.45 Aligned_cols=13 Identities=8% Similarity=0.432 Sum_probs=10.7
Q ss_pred cCcceecchhhee
Q psy2167 56 SYDTVCVPLVYTQ 68 (79)
Q Consensus 56 ~yDWVpIPLvY~Q 68 (79)
.|++||||++.|=
T Consensus 117 d~~yiP~P~~LPl 129 (163)
T 3gp6_A 117 NWNYIPLPVLLPL 129 (163)
T ss_dssp GGTTCEEEEEEEE
T ss_pred CCCccccceeeee
Confidence 3899999998773
No 15
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=36.10 E-value=21 Score=18.95 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q psy2167 35 HVVQTLLYELSEHRRKLGSIIS 56 (79)
Q Consensus 35 ~~~~~l~~ei~~FR~~l~~L~~ 56 (79)
..-++++.|.++.|+.|+.|.+
T Consensus 12 ~rkerIv~eCnavrqALQdLls 33 (40)
T 4e17_B 12 DRRERIVAECNAVRQALQDLLS 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999998753
No 16
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=36.05 E-value=16 Score=21.86 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhccccc
Q psy2167 38 QTLLYELSEHRRKLGSIIS 56 (79)
Q Consensus 38 ~~l~~ei~~FR~~l~~L~~ 56 (79)
..=++||.++|.+|+.|..
T Consensus 58 d~KI~eL~elRqgLakL~~ 76 (79)
T 3cvf_A 58 DVSLFELSELREGLARLAE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcc
Confidence 3346799999999998753
No 17
>3may_A RV0203, possible exported protein; helical protein, heme-binding protein; 2.50A {Mycobacterium tuberculosis}
Probab=34.11 E-value=27 Score=21.84 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhcccccCcceecchhheeeeeE
Q psy2167 35 HVVQTLLYELSEHRRKLGSIISYDTVCVPLVYTQQNFL 72 (79)
Q Consensus 35 ~~~~~l~~ei~~FR~~l~~L~~yDWVpIPLvY~QvV~l 72 (79)
..++.|.+-|.+||+.|+ +|+.-||+..+
T Consensus 64 ~dL~~I~qPl~Dl~~rC~---------~~v~p~ql~~~ 92 (101)
T 3may_A 64 SDLHALSQPLTDLSTRCS---------LPISGLQAIGL 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHTC---------CSCSSGGGGC-
T ss_pred HHHHHHHhhHHHHHHhcC---------CCCChHHHHHH
Confidence 467889999999999998 47777777654
No 18
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=29.83 E-value=27 Score=17.23 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcccccCc
Q psy2167 42 YELSEHRRKLGSIISYD 58 (79)
Q Consensus 42 ~ei~~FR~~l~~L~~yD 58 (79)
+||++..+++..-.+||
T Consensus 13 qeikelennirkalsfd 29 (31)
T 2wh0_Q 13 QEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 56777777776666666
No 19
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=27.45 E-value=80 Score=17.09 Aligned_cols=40 Identities=5% Similarity=0.087 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccCccee
Q psy2167 20 NIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVC 61 (79)
Q Consensus 20 ~ll~~ar~eg~i~~~~~~~~l~~ei~~FR~~l~~L~~yDWVp 61 (79)
+.+++...++ .+......-+.+|...+..+..+..=||.|
T Consensus 14 ~~VR~LKa~k--A~k~~i~~aV~~Ll~lK~~~~~~tg~~~~p 53 (57)
T 1fyj_A 14 DVVRELKAKK--APKEDVDAAVKQLLSLKAEYKEKTGQEYKP 53 (57)
T ss_dssp HHHHHHHHTT--CCHHHHHHHHHHHHHHHHHHHHHHSCCSCS
T ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4566666655 344578888899999999999999999987
No 20
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=24.85 E-value=55 Score=22.71 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q psy2167 19 TNIINRARKEALISSDHVVQTLLYELSEHRRKL 51 (79)
Q Consensus 19 ~~ll~~ar~eg~i~~~~~~~~l~~ei~~FR~~l 51 (79)
-.|+..++++|+|+.+ -.+++++||++-
T Consensus 211 ~dl~~~~~~~~~i~~~-----~~~~~~~~~~~p 238 (243)
T 3dez_A 211 SELIKVAKVQGYIDAD-----GLTLLKKFKENQ 238 (243)
T ss_dssp HHHHHHHHHTTSSCHH-----HHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCCHH-----HHHHHHHHHhCH
Confidence 3688899999999854 367889999864
No 21
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=23.79 E-value=43 Score=19.09 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q psy2167 35 HVVQTLLYELSEHRRKLGSII 55 (79)
Q Consensus 35 ~~~~~l~~ei~~FR~~l~~L~ 55 (79)
..-++++.|.++.|+.|+.|.
T Consensus 31 ~rke~Iv~eCnavrqALQdLl 51 (59)
T 4e18_B 31 DRRERIVAECNAVRQALQDLL 51 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999875
No 22
>2l6a_A Nacht, LRR and PYD domains-containing protein 12; NLRP12, pyrin, death domain, signaling protein; NMR {Homo sapiens}
Probab=23.33 E-value=49 Score=20.17 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcccccCcceecc
Q psy2167 42 YELSEHRRKLGSIISYDTVCVP 63 (79)
Q Consensus 42 ~ei~~FR~~l~~L~~yDWVpIP 63 (79)
+|+++|+..|..-.....-+||
T Consensus 25 ~ElkkFK~~L~~~l~~g~~~Ip 46 (102)
T 2l6a_A 25 VELKKFKLYLGTATELGEGKIP 46 (102)
T ss_dssp HHHHHHHHHHHSCSTTTTCSSC
T ss_pred HHHHHHHHHHcccccccCCCCC
Confidence 5899999999873344566676
No 23
>2rld_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.29.16.1
Probab=23.31 E-value=88 Score=19.14 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Q psy2167 20 NIINRARKEALISSDHVVQTLLYELSEHRRKLGSIIS 56 (79)
Q Consensus 20 ~ll~~ar~eg~i~~~~~~~~l~~ei~~FR~~l~~L~~ 56 (79)
..+.-|.+.|+|+.+ .+..+.+|+.+..+-++.+.+
T Consensus 81 ~~L~l~~~~~yi~~~-~~~~l~~~~~ei~kmL~~~ik 116 (121)
T 2rld_A 81 YWLELLIRTEYITRE-QYESINNDSTEINKLLISIIK 116 (121)
T ss_dssp HHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345667788998855 678888888887777766544
No 24
>2gsc_A Putative uncharacterized protein XCC0516; four-helix bundle, homopentamer, pentameric toroid, unknown function; 2.45A {Xanthomonas campestris PV} SCOP: a.29.16.1
Probab=22.35 E-value=92 Score=19.21 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Q psy2167 20 NIINRARKEALISSDHVVQTLLYELSEHRRKLGSIIS 56 (79)
Q Consensus 20 ~ll~~ar~eg~i~~~~~~~~l~~ei~~FR~~l~~L~~ 56 (79)
..+.-|.+.|+|+.+ .+..+.+++.+..+-++.+.+
T Consensus 85 ~~L~la~~~~yi~~~-~~~~l~~~~~ei~kml~~~ik 120 (128)
T 2gsc_A 85 TQVQIAARLGYSRSE-DDQSVRRQVDLVFAKLTALMN 120 (128)
T ss_dssp HHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 456677888988865 567777777777776665543
No 25
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=22.05 E-value=1.2e+02 Score=17.22 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCCCHH-HHHHHHH-HHHHHHHHhccc
Q psy2167 17 WATNIINRARKEALISSDH-VVQTLLY-ELSEHRRKLGSI 54 (79)
Q Consensus 17 Wa~~ll~~ar~eg~i~~~~-~~~~l~~-ei~~FR~~l~~L 54 (79)
-..+|+++-+.-..+.+-+ .+.++++ ||.+.|+.+-..
T Consensus 9 YL~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR~~Lf~~ 48 (60)
T 3k6t_A 9 YLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQT 48 (60)
T ss_dssp HHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3456777666665544332 4566555 899999987654
No 26
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=21.71 E-value=64 Score=17.66 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCCCH
Q psy2167 20 NIINRARKEALISSD 34 (79)
Q Consensus 20 ~ll~~ar~eg~i~~~ 34 (79)
-++++|.+.|+|+..
T Consensus 22 ~~mR~AV~~G~iTQ~ 36 (51)
T 2xf7_A 22 ELLRVAVNAGDLTQE 36 (51)
T ss_dssp HHHHHHHHHTSSCHH
T ss_pred HHHHHHHhcCcccHH
Confidence 578999999999854
No 27
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=20.52 E-value=1.2e+02 Score=16.71 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccCcceecc
Q psy2167 20 NIINRARKEALISSDHVVQTLLYELSEHRRKLGSIISYDTVCVP 63 (79)
Q Consensus 20 ~ll~~ar~eg~i~~~~~~~~l~~ei~~FR~~l~~L~~yDWVpIP 63 (79)
+.+++...++ .+......-+++|..-+..+..+..=||.|-|
T Consensus 11 ~~VR~LKa~k--A~k~~i~~aV~~Ll~LK~~~~~~tg~~~~p~~ 52 (59)
T 1d2d_A 11 EVVRKLKAEK--APKAKVTEAVECLLSLKAEYKEKTGKEYVPGL 52 (59)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHHHHHHHHHCSSSSSSCCCSS
T ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 4566665555 44557888899999999999999999998865
Done!