BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2168
(516 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5U3I0|SAM5B_DANRE Sorting and assembly machinery component 50 homolog B OS=Danio
rerio GN=samm50b PE=2 SV=1
Length = 469
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 189/531 (35%), Positives = 272/531 (51%), Gaps = 77/531 (14%)
Query: 1 MGSVHAKEIPSQPYDELDSDPN-DAMLGHVMVAPAR------------VDRVKVEGIGRT 47
MG+VHA+ + S P D N D M VM A V V +EG+GRT
Sbjct: 1 MGTVHARSMDSYPMYGRDLGVNTDDM--EVMEAVQETKQEVLENKDVVVQHVNIEGLGRT 58
Query: 48 YDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHG 107
+D + I +++F + +++ + HE R +L RL F+ V++ ID S+G DA P +G
Sbjct: 59 KEDYLGYEI--SDVFTARNLVEVMRKSHEARQRLLRLGIFRDVEVVIDISEGADALP-NG 115
Query: 108 YEITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLT 167
++TF V ELKR T +GNNEGS+V+ K+PN+ GRGE + YGTK Y L+
Sbjct: 116 LDVTFEVTELKRLTGSYNTMVGNNEGSMVLGIKLPNMLGRGEKLTFQFSYGTKETSYGLS 175
Query: 168 LRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREI 227
KP G + + +L + + P SS K ++G+ + ++ ++++W G+ RE+
Sbjct: 176 FFKPQSGYFERNFTVNLYKVTGQFPWSSLKETDRGVSTELSLPLWMTDHTLKWEGVWREL 235
Query: 228 QPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGDVGF 286
+R FA+RE +G+TLKS+L +D R+ ILPR G + + E AG GGD F
Sbjct: 236 GCLARSASFAVREESGHTLKSALSHTMVVDTRNSAILPRKGALLRINQELAGYTGGDANF 295
Query: 287 QKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSS 346
K +D L + QF GSV A L G
Sbjct: 296 LK--------------------------EDVELQLNKQFIWGSVLSASLWGG-------- 321
Query: 347 LFQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGG 406
+ YPLG T ++ DRF+LGGP +RGF Y IGP+S G
Sbjct: 322 ---MIYPLGAQPT-------------------SIADRFYLGGPTSVRGFGMYSIGPQSEG 359
Query: 407 SSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASE-ITSKWRKL 465
LGG YW G H+YTPLPF + KG +D FR +FF NAG+I +++ E + +KL
Sbjct: 360 DYLGGEAYWAGGLHLYTPLPF-RSNKGGLADLFRTHFFLNAGNICNLNYGEGPRAHLQKL 418
Query: 466 GEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI 516
E +R SYG G+ +R +AR+E+NYCFP Q D + G+QFG GI F+
Sbjct: 419 AECIRWSYGAGIILRLGNIARLELNYCFPMGVQSGDRICDGVQFGAGIRFL 469
>sp|Q7ZWS5|SAM5A_XENLA Sorting and assembly machinery component 50 homolog A OS=Xenopus
laevis GN=samm50-a PE=2 SV=1
Length = 468
Score = 289 bits (739), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 189/532 (35%), Positives = 273/532 (51%), Gaps = 80/532 (15%)
Query: 1 MGSVHAKEIPSQPYDELD-SDPNDAMLGHVMVAPAR-----------VDRVKVEGIGRTY 48
MG+VHA+ + P + D P+DA L V V P + V RV EG+GRT
Sbjct: 1 MGTVHARSLDPLPMNGPDFGSPDDADL--VEVEPQKKQEILENKDVVVQRVHFEGLGRTK 58
Query: 49 DDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGY 108
DD++ I Q +FK+ +++ + HE R +L RL F+ V++ ID +G DA P +G
Sbjct: 59 DDLVAHEIGQ--VFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTCEGEDAVP-NGL 115
Query: 109 EITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTL 168
++TF V EL+R T +GNNEGS+V+ K+PNL+GR E + YGTK Y L+
Sbjct: 116 DVTFEVTELRRVTGSYNTMVGNNEGSMVLGLKLPNLFGRAEKMTFQFSYGTKETSYGLSF 175
Query: 169 RKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNS--IEWNGLIRE 226
KP G + S +L + + P SS + ++G+ + I FP K S ++W G+ RE
Sbjct: 176 FKPQVGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAE--INFPIWKTSHTLKWEGVWRE 233
Query: 227 IQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGF 286
+ +R +A +T++ E +G
Sbjct: 234 LGCLAR--------TASFTIR----------------------------EESG------- 250
Query: 287 QKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGDVGFQKYS 345
+TLKSSL +D R+ ILP+ G + + E AG GGDV F K
Sbjct: 251 ------------HTLKSSLSHSMVIDSRNASILPKSGALLKINQELAGYTGGDVSFLKED 298
Query: 346 SLFQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSG 405
Q+N L SL G+L D+ ++ DRF+LGGP +RGF+ Y IGP+S
Sbjct: 299 FELQLNRQLTWDSVLSTSLWGGMLVPIG-DRPSSIADRFYLGGPTSVRGFSMYSIGPQSE 357
Query: 406 GSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASE-ITSKWRK 464
G LGG YW G H+YTPLPF +P +G F D FR +FF NAG++ +++ E + R+
Sbjct: 358 GDYLGGEAYWAGGVHLYTPLPF-RPGRGGFGDLFRTHFFLNAGNLCNLNYGEGPGAHLRR 416
Query: 465 LGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI 516
L E +R SYG GL +R +AR+E+NYC P Q D + G+QFG GI F+
Sbjct: 417 LAECIRWSYGAGLVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRFL 468
>sp|Q6PA35|SAM5B_XENLA Sorting and assembly machinery component 50 homolog B OS=Xenopus
laevis GN=samm50-b PE=2 SV=1
Length = 468
Score = 275 bits (704), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 186/530 (35%), Positives = 262/530 (49%), Gaps = 76/530 (14%)
Query: 1 MGSVHAKEIPSQPYDELD-SDPNDAMLGHVMVAPAR-----------VDRVKVEGIGRTY 48
MG+VHA+ + P + D P+DA L V V P + V RV EG+GRT
Sbjct: 1 MGTVHARSLDPLPMNGPDFGSPDDADL--VEVEPEKKQEILENKDVVVQRVHFEGLGRTK 58
Query: 49 DDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGY 108
DD+I I Q +FK+ +++ + HE R +L RL F+ V++ ID S+G DA P +G
Sbjct: 59 DDLIAHEIGQ--VFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTSEGEDAVP-NGL 115
Query: 109 EITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTL 168
++TF V EL+R T +GNNEGS+V+ K PNL+GR E + YGTK Y L+
Sbjct: 116 DVTFEVTELRRLTGSYNTMVGNNEGSMVLGLKFPNLFGRAEKMTFQFSYGTKETSYGLSF 175
Query: 169 RKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREIQ 228
KP G + S +L + + P W+ L +
Sbjct: 176 FKPQVGNFERNFSVNLYKVTGQFP---------------------------WSSLRETDR 208
Query: 229 PASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQK 288
S F I +++ +TLK + R+ L R F
Sbjct: 209 GVSAEINFPIWKTS-HTLKWEGVW------RELGCLARTASFAI---------------- 245
Query: 289 YSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGDVGFQKYSSL 347
R +TLKSSL +D R+ ILP+ G + + E AG GGDV F K
Sbjct: 246 -----REESGHTLKSSLSHTMVIDSRNASILPKRGALLKINQELAGYTGGDVSFLKEDFE 300
Query: 348 FQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGS 407
Q+N L SL G+L D+ ++ DRF+LGGP +RGF+ Y IGP+S G
Sbjct: 301 LQLNKQLAWDSVLSTSLWGGMLVPVG-DRPSSIADRFYLGGPTSVRGFSMYSIGPQSEGD 359
Query: 408 SLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASE-ITSKWRKLG 466
LGG YW G H+YTPLPF +P +G F D FR +FF NAG++ +++ E + ++L
Sbjct: 360 YLGGEAYWAGGVHLYTPLPF-RPGRGGFGDLFRTHFFLNAGNLCNLNYGEGPRAHLQRLA 418
Query: 467 EELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI 516
E +R SYG GL +R +AR+E+NYC P Q D + G+QFG GI F+
Sbjct: 419 ECIRWSYGAGLVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRFL 468
>sp|Q6P806|SAM50_XENTR Sorting and assembly machinery component 50 homolog OS=Xenopus
tropicalis GN=samm50 PE=2 SV=1
Length = 468
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 185/530 (34%), Positives = 261/530 (49%), Gaps = 76/530 (14%)
Query: 1 MGSVHAKEIPSQPYDELD-SDPNDAMLGHVMVAPAR-----------VDRVKVEGIGRTY 48
MG+VHA+ + P + D +DA L V V P + V RV EG+GRT
Sbjct: 1 MGTVHARSLDPLPMNGPDFGSHDDADL--VEVEPQKKQEILENKDVVVQRVHFEGLGRTK 58
Query: 49 DDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGY 108
DD+I I Q +FK+ +++ + HE R +L RL F+ V++ ID +G DA P +G
Sbjct: 59 DDLIAHEIGQ--VFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTCEGEDALP-NGL 115
Query: 109 EITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTL 168
++TF V EL+R T +GNNEGS+V+ K+PNL+GR E + YGTK Y L+
Sbjct: 116 DVTFEVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLFGRAEKMTFQFSYGTKETSYGLSF 175
Query: 169 RKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREIQ 228
KP G + S +L + + P W+ L +
Sbjct: 176 FKPQVGNFERNFSVNLYKVTGQFP---------------------------WSSLRETDR 208
Query: 229 PASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQK 288
S F I +++ +TLK + R+ L R F
Sbjct: 209 GVSAEINFPIWKTS-HTLKWEGVW------RELGCLARTASFAI---------------- 245
Query: 289 YSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGDVGFQKYSSL 347
R +TLKSSL +D R+ ILP+ G + + E AG GGDV F K
Sbjct: 246 -----REESGHTLKSSLSHTMVIDSRNTSILPKRGALLKINQELAGYTGGDVSFLKEDFE 300
Query: 348 FQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGS 407
Q+N L SL G+L DK ++ DRF+LGGP +RGF+ Y IGP+S G
Sbjct: 301 LQLNKQLAWDSVLSTSLWGGMLVPIG-DKPSSIADRFYLGGPTSVRGFSMYSIGPQSEGD 359
Query: 408 SLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASE-ITSKWRKLG 466
LGG YW G H+YTPLPF +P +G F D FR +FF NAG++ +++ E + R+L
Sbjct: 360 YLGGEAYWAGGMHLYTPLPF-RPGRGGFGDLFRTHFFLNAGNLCNLNYGEGPRAHLRRLA 418
Query: 467 EELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI 516
E +R SYG G+ +R +AR+E+NYC P Q D + G+QFG GI F+
Sbjct: 419 ECIRWSYGAGIVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRFL 468
>sp|Q803G5|SAM5A_DANRE Sorting and assembly machinery component 50 homolog A OS=Danio
rerio GN=samm50a PE=2 SV=1
Length = 469
Score = 259 bits (662), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 179/533 (33%), Positives = 257/533 (48%), Gaps = 81/533 (15%)
Query: 1 MGSVHAKEIPSQPYD--ELDSDPNDAMLGHVMVAPAR-------------VDRVKVEGIG 45
MG+VHA+ + P EL +D LG P R V V ++G+G
Sbjct: 1 MGTVHARSLDPLPMQGPELGVQADDMDLGE----PEREEKQEVLENKDVVVQHVHIDGLG 56
Query: 46 RTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPE 105
RT +DI+T I ++F + ++ + HE R +L RL F+ V++ ID ++G DA P
Sbjct: 57 RTKEDILTYEI--ADVFHAKNLIDVMKKSHEARQKLLRLGIFRHVEVVIDTAEGADALP- 113
Query: 106 HGYEITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYN 165
+G ++TF V+EL+R T +GNNEGS+V+ K+PN+ GR E + YGTK Y
Sbjct: 114 NGLDVTFEVRELRRMTGSYNTMVGNNEGSMVLGIKLPNVLGRAEKLTFQFSYGTKETSYG 173
Query: 166 LTLRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIR 225
L+ KP G + S +L + + P W+ L
Sbjct: 174 LSFFKPQPGHFERNFSLNLYKVTGQFP---------------------------WSSLRE 206
Query: 226 EIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVG 285
+ S F I ++ +TLK + R+ L R F
Sbjct: 207 TDRGVSAEISFPIWRTS-HTLKWEGVW------RELGCLARTASFAV------------- 246
Query: 286 FQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGDVGFQKY 344
R ++LKSSL +D R+ ILPR G + + E AG GGDV F K
Sbjct: 247 --------REESGHSLKSSLAHAMVIDTRNSTILPRKGALLKINQELAGYTGGDVSFLKE 298
Query: 345 SSLFQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKS 404
Q+N L SL G+L + K ++ DRF+LGGP +RGF+ Y IGP+S
Sbjct: 299 DFEIQLNKTLFWDSVLSTSLWGGMLLPLGE-KASSIADRFYLGGPTSVRGFSMYSIGPQS 357
Query: 405 GGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASE-ITSKWR 463
G LGG YW G H+YTPLPF +P +G F D FR +FF NAG++ +++ E +
Sbjct: 358 EGDYLGGEAYWAGGVHLYTPLPF-RPGRGGFGDLFRTHFFLNAGNLCNLNYGEGPRAHLS 416
Query: 464 KLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI 516
KL E +R SYG G+ +R +AR+E+NYC P Q D + G+QFG GI F+
Sbjct: 417 KLAECIRWSYGAGIVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRFL 469
>sp|Q9V784|SAM50_DROME SAM50-like protein CG7639 OS=Drosophila melanogaster GN=CG7639 PE=2
SV=2
Length = 443
Score = 219 bits (558), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 142/491 (28%), Positives = 227/491 (46%), Gaps = 78/491 (15%)
Query: 34 ARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIE 93
ARVDRV V G+ RT++D + + +FK+S F L+ + ++ L L F+ V +
Sbjct: 23 ARVDRVNVSGLLRTHNDYVMRAADG--LFKASNFQDLMLEAMSTKSYLHELGIFKDVSVH 80
Query: 94 IDASKGPDATPEHGYEITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEM 153
ID S+G DA+P+ GYE+TF+ E+ R T IG NEGS+ +PN+ GRGE +
Sbjct: 81 IDVSRGADASPQ-GYEVTFKGNEMSRMMGSAGTEIGQNEGSLRTELTIPNILGRGENISL 139
Query: 154 SYVYG-TKSLVYNLTLRKPFF----GPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYA 208
Y T++ L KPFF +S S+ RQ + SS + G ++D++
Sbjct: 140 QGSYSSTRANDLQLKFWKPFFHTRFKENRPEMSFSIFRQTDRFDISSFQTTNIGYLVDFS 199
Query: 209 ---ILFPTIKNSIEWNGLIREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILP 265
++ + +S+++ IR++ ++ PFAIR+ G L S L++ D RD + P
Sbjct: 200 AHTMVGVDLTHSLQYENAIRDVGLLNKSVPFAIRDHCGPKLASLLRYSVVYDNRDGNVFP 259
Query: 266 RHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQF 325
G + + E+ GLGG+V + ++ HG
Sbjct: 260 TRGIYLKSVNEYCGLGGNVAYTSSTA------------------------------HG-- 287
Query: 326 CQGSVEFAGLGGDVGFQKYSSLFQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFF 385
++N PL + AQ G++ + F+
Sbjct: 288 -----------------------ELNVPLFAGLVAQFCARVGVVKETKNTTQLPISSLFY 324
Query: 386 LGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFA 445
GGPL LRGF G GP + +G +W H++ PLPF K + + +FR++FF
Sbjct: 325 CGGPLTLRGFKFGGAGPVVESTPIGAQSFWCTGAHLWAPLPFAGVFK-NLASHFRMHFFY 383
Query: 446 NAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVP 505
N G+ S E +R ++G+GLA++ A AR+E+NYC P +Q D ++
Sbjct: 384 NIGNNNSFST-----------ENMRSAFGMGLAVKLAERARIELNYCVPVRHQDTDRILN 432
Query: 506 GMQFGFGITFI 516
G QFG G F+
Sbjct: 433 GFQFGIGYEFV 443
>sp|Q6AXV4|SAM50_RAT Sorting and assembly machinery component 50 homolog OS=Rattus
norvegicus GN=Samm50 PE=1 SV=1
Length = 469
Score = 179 bits (453), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 132/220 (60%), Gaps = 4/220 (1%)
Query: 299 YTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGDVGFQKYSSLFQVNYPLGPY 357
++LKSSL +D R+ ILPR G + + E AG GGDV F K Q+N PL
Sbjct: 252 HSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKPLVLD 311
Query: 358 ITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQG 417
SL G+L DK ++ DRF+LGGP +RGF+ + IGP+S G LGG YW G
Sbjct: 312 SVFSTSLWGGMLVPIG-DKLSSIADRFYLGGPTSVRGFSMHSIGPQSEGDYLGGEAYWAG 370
Query: 418 AYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASE-ITSKWRKLGEELRISYGIG 476
H+YTPLPF +P +G F + FR +FF NAG++ +++ E + RKL E +R SYG G
Sbjct: 371 GLHLYTPLPF-RPGQGGFGELFRTHFFLNAGNLCNLNYGEGPRAHIRKLAECIRWSYGAG 429
Query: 477 LAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI 516
+ +R +AR+E+NYC P QR D + G+QFG GI F+
Sbjct: 430 IVLRLGNIARLELNYCIPMGVQRGDRICDGVQFGAGIRFL 469
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 156/300 (52%), Gaps = 15/300 (5%)
Query: 1 MGSVHAKEIPSQPYDELDSDPNDAMLGHVMVAPAR-----------VDRVKVEGIGRTYD 49
MG+VHA+ + P D V V P V V +G+ RT D
Sbjct: 1 MGTVHARSLEPLPSSGTDFGALGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLERTKD 60
Query: 50 DIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYE 109
DII I E+FK+ +++ + HE R +L RL F+QV + ID G DA P +G +
Sbjct: 61 DIIICEIG--EVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTCHGEDALP-NGLD 117
Query: 110 ITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTLR 169
+TF V EL+R T +GNNEGS+V+ K+PNL GR E + YGTK Y L+
Sbjct: 118 VTFEVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFF 177
Query: 170 KPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREIQP 229
KP G + S +L + + P SS + ++G+ +Y+ ++++W G+ RE+
Sbjct: 178 KPQPGNFEKNFSVNLYKVTGQFPWSSLRETDRGVSAEYSFPLCKTSHTVKWEGVWRELGC 237
Query: 230 ASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGDVGFQK 288
+R FA+R+ +G++LKSSL +D R+ ILPR G + + E AG GGDV F K
Sbjct: 238 LARTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDVSFIK 297
>sp|Q9Y512|SAM50_HUMAN Sorting and assembly machinery component 50 homolog OS=Homo sapiens
GN=SAMM50 PE=1 SV=3
Length = 469
Score = 178 bits (451), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 162/304 (53%), Gaps = 23/304 (7%)
Query: 1 MGSVHAKEIPSQPYDELDSDPNDAMLGH----VMVAPAR-----------VDRVKVEGIG 45
MG+VHA+ + P S P+ LG V V P V V +G+G
Sbjct: 1 MGTVHARSLEPLP----SSGPDFGGLGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLG 56
Query: 46 RTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPE 105
RT DDII I ++FK+ +++ + HE R +L RL F+QV + ID +G DA P
Sbjct: 57 RTKDDIIICEIG--DVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALP- 113
Query: 106 HGYEITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYN 165
+G ++TF V EL+R T +GNNEGS+V+ K+PNL GR E + YGTK Y
Sbjct: 114 NGLDVTFEVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYG 173
Query: 166 LTLRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIR 225
L+ KP G + S +L + + P SS + ++G+ +Y+ ++++W G+ R
Sbjct: 174 LSFFKPRPGNFERNFSVNLYKVTGQFPWSSLRETDRGMSAEYSFPIWKTSHTVKWEGVWR 233
Query: 226 EIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGDV 284
E+ SR FA+R+ +G++LKSSL +D R+ ILPR G + + E AG GGDV
Sbjct: 234 ELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDV 293
Query: 285 GFQK 288
F K
Sbjct: 294 SFIK 297
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 130/220 (59%), Gaps = 4/220 (1%)
Query: 299 YTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGDVGFQKYSSLFQVNYPLGPY 357
++LKSSL +D R+ ILPR G + + E AG GGDV F K Q+N L
Sbjct: 252 HSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFD 311
Query: 358 ITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQG 417
AS G+L DK ++ DRF+LGGP +RGF+ + IGP+S G LGG YW G
Sbjct: 312 SVFSASFWGGMLVPIG-DKPSSIADRFYLGGPTSIRGFSMHSIGPQSEGDYLGGEAYWAG 370
Query: 418 AYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASE-ITSKWRKLGEELRISYGIG 476
H+YTPLPF +P +G F + FR +FF NAG++ +++ E + RKL E +R SYG G
Sbjct: 371 GLHLYTPLPF-RPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAG 429
Query: 477 LAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI 516
+ +R +AR+E+NYC P Q D + G+QFG GI F+
Sbjct: 430 IVLRLGNIARLELNYCVPMGVQTGDRICDGVQFGAGIRFL 469
>sp|Q8BGH2|SAM50_MOUSE Sorting and assembly machinery component 50 homolog OS=Mus musculus
GN=Samm50 PE=1 SV=1
Length = 469
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 157/300 (52%), Gaps = 15/300 (5%)
Query: 1 MGSVHAKEIPSQPYDELDSDPNDAMLGHVMVAPAR-----------VDRVKVEGIGRTYD 49
MG+VHA+ + P D V V P V V +G+GRT D
Sbjct: 1 MGTVHARSLEPLPSSGTDFGALGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKD 60
Query: 50 DIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYE 109
DII I E+FK+ +++ + HE R +L RL F+QV + ID G DA P +G +
Sbjct: 61 DIIICEIG--EVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTCHGEDALP-NGLD 117
Query: 110 ITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTLR 169
+TF V EL+R T +GNNEGS+V+ K+PNL GR E + YGTK Y L+
Sbjct: 118 VTFEVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFF 177
Query: 170 KPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREIQP 229
KP G + S +L + + P SS + ++G+ +Y+ ++++W G+ RE+
Sbjct: 178 KPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYSFPLWKTSHTVKWEGVWRELGC 237
Query: 230 ASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGDVGFQK 288
SR FA+R+ +G++LKSSL +D R+ ILPR G + + E AG GGDV F K
Sbjct: 238 LSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALFKVNQELAGYTGGDVSFIK 297
Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 131/220 (59%), Gaps = 4/220 (1%)
Query: 299 YTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGDVGFQKYSSLFQVNYPLGPY 357
++LKSSL +D R+ ILPR G + + E AG GGDV F K Q+N PL
Sbjct: 252 HSLKSSLSHAMVIDSRNSSILPRRGALFKVNQELAGYTGGDVSFIKEDFELQLNKPLALD 311
Query: 358 ITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQG 417
SL G+L DK ++ DRF+LGGP +RGF+ + IGP+S G LGG YW G
Sbjct: 312 SVFSTSLWGGMLVPIG-DKPSSIADRFYLGGPTSVRGFSMHSIGPQSEGDYLGGEAYWAG 370
Query: 418 AYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASE-ITSKWRKLGEELRISYGIG 476
H+YTPLPF +P +G F + FR +FF NAG++ +++ E + RKL E +R SYG G
Sbjct: 371 GLHLYTPLPF-RPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAG 429
Query: 477 LAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI 516
+ +R +AR+E+NYC P Q D + G+QFG GI F+
Sbjct: 430 VVLRLGNIARLELNYCIPMGVQGGDRICDGVQFGAGIRFL 469
>sp|Q2HJ55|SAM50_BOVIN Sorting and assembly machinery component 50 homolog OS=Bos taurus
GN=SAMM50 PE=2 SV=1
Length = 469
Score = 169 bits (427), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 166/306 (54%), Gaps = 27/306 (8%)
Query: 1 MGSVHAKEIPSQPYDELDSDPNDAMLGH----VMVAPAR-----------VDRVKVEGIG 45
MG+VHA+ + P S P+ LG V V P V V +G+G
Sbjct: 1 MGTVHARSLEPLPA----SGPDFGALGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLG 56
Query: 46 RTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPE 105
RT DDII I+ ++FK+ +++ + HE R +L RL F+QV + ID +G DA P
Sbjct: 57 RTKDDIIMYEIR--DVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALP- 113
Query: 106 HGYEITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYN 165
+G ++TF V EL+R T +GNNEGS+V+ K+PNL GR E + YGTK Y
Sbjct: 114 NGLDVTFEVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYG 173
Query: 166 LTLRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNS--IEWNGL 223
L+ KP G D S +L + + P SS + ++G+ +Y+ FPT K S ++W G+
Sbjct: 174 LSFFKPQPGNFDRNFSVNLYKVTGQFPWSSLRETDRGVSAEYS--FPTWKTSHTVKWEGV 231
Query: 224 IREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGG 282
RE+ SR FA+R+ +G++LKSSL +D R+ ILP+ G + + E AG GG
Sbjct: 232 WRELGCLSRVASFAVRKESGHSLKSSLSHSMVIDSRNSSILPKRGALLKVNQELAGYTGG 291
Query: 283 DVGFQK 288
DV F K
Sbjct: 292 DVSFLK 297
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 125/208 (60%), Gaps = 4/208 (1%)
Query: 311 LDKRDDKILPRHGQFCQGSVEFAG-LGGDVGFQKYSSLFQVNYPLGPYITAQASLDAGLL 369
+D R+ ILP+ G + + E AG GGDV F K Q+N L ASL G+L
Sbjct: 264 IDSRNSSILPKRGALLKVNQELAGYTGGDVSFLKEDFELQLNKQLILDTVFSASLWGGML 323
Query: 370 GSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTK 429
DK ++ DRF+LGGP +RGF+ + +GP+S G LGG YW G H+YTPLPF +
Sbjct: 324 VPMG-DKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYLGGEAYWAGGLHLYTPLPF-R 381
Query: 430 PTKGSFSDNFRLNFFANAGSIQDMSASE-ITSKWRKLGEELRISYGIGLAIRFAGLARVE 488
P +G F + FR +FF NAG++ +++ E + RKL E +R SYG G+ +R +AR+E
Sbjct: 382 PGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLE 441
Query: 489 INYCFPYSYQRDDSVVPGMQFGFGITFI 516
+NYC P QR D + G+QFG GI F+
Sbjct: 442 LNYCVPMGVQRGDRICDGVQFGAGIRFL 469
>sp|P46576|SAM50_CAEEL SAM50-like protein gop-3 OS=Caenorhabditis elegans GN=gop-3 PE=2
SV=2
Length = 434
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 125/488 (25%), Positives = 201/488 (41%), Gaps = 77/488 (15%)
Query: 33 PARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQI 92
P+ V+ V+ G+ T +D + + +E+++S +L+ H L+ +
Sbjct: 20 PSIVEAVQFHGVRITKNDALVKEV--SELYRSKNLDELVHNSHLAARHLQEVGLMDNAVA 77
Query: 93 EIDASKGPDATPEHGYEITFRVKELKRYRAGVTTSIGNN-EGSVVVWGKMPNLYGRGELA 151
ID S + GY + F V+E K + AGV + N + V + ++ GRGE
Sbjct: 78 LIDTSP----SSNEGYVVNFLVREPKSFTAGVKAGVSTNGDADVSLNAGKQSVGGRGEAI 133
Query: 152 EMSYVYGTK-SLVYNLTLRKPFFGPID-SMLSGSLLRQVNEMPASSCKLLEQGLILDYAI 209
Y Y K +N++ KPF G S +S +L R + MP + + E +L Y
Sbjct: 134 NTQYTYTVKGDHCFNISAIKPFLGWQKYSNVSATLYRSLAHMPWNQSDVDENAAVLAY-- 191
Query: 210 LFPTIKNSIEWN-GLIREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHG 268
N WN L+ +++ + A ++++
Sbjct: 192 ------NGQLWNQKLLHQVKLNAIWRTLRATRDAAFSVR--------------------- 224
Query: 269 QFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQG 328
E AG +TLK SL+ ++D RD IL G +
Sbjct: 225 -------EQAG-------------------HTLKFSLENAVAVDTRDRPILASRGILARF 258
Query: 329 SVEFAGLGGDVGFQKYSSLFQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGG 388
+ E+AG+ GD F K + Q PL AS A L D+ + DR +LGG
Sbjct: 259 AQEYAGVFGDASFVKNTLDLQAAAPLPLGFILAASFQAKHLKGLG-DREVHILDRCYLGG 317
Query: 389 PLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAG 448
+RGF IG K+ S LGG G H+Y PL P F+ + F +G
Sbjct: 318 QQDVRGFGLNTIGVKADNSCLGGGASLAGVVHLYRPLI---PPNMLFA-----HAFLASG 369
Query: 449 SIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQ 508
S+ + + + ++L + R+S G GLA F + R+E+NY +P Y DS++ G
Sbjct: 370 SVASVHSKNLV---QQLQDTQRVSAGFGLAFVFKSIFRLELNYTYPLKYVLGDSLLGGFH 426
Query: 509 FGFGITFI 516
G G+ F+
Sbjct: 427 IGAGVNFL 434
>sp|Q10478|SAM50_SCHPO SAM50-like protein SPAC17C9.06 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC17C9.06 PE=3 SV=1
Length = 475
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 134/292 (45%), Gaps = 29/292 (9%)
Query: 247 KSSLKFITSLDKRDDKILPRHGQFCQG---SVEFAGLGGDVGFQKYSSLHRVVHRYT--- 300
K+ L+F + RD+K + H +G S++ L + L R V T
Sbjct: 191 KTRLRFNGHSNLRDNKSISSHDLLTKGITLSLQHQDLWSGEHLLSQNLLWRQVTHLTEYA 250
Query: 301 -----------LKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLG---GDVGFQKYSS 346
LK SL + + D RD ++P G + + ++E AG G GD F K
Sbjct: 251 SPSVRLEAGDSLKQSLSYTYTRDTRDHLMIPTKGDYVRQTLELAGFGFLPGDASFLKSEF 310
Query: 347 LFQVNYPLGPYITAQASLDA--GLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKS 404
Q L + SL A G L S ++ K +LCDRF LGG LRGF+ IGPK
Sbjct: 311 WGQKAVALNSSRSVSLSLSARIGALHSLNK-KQVSLCDRFMLGGSTSLRGFSEDRIGPKD 369
Query: 405 GGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRK 464
G SLGGT Y + + PLP K S FRL FANAG + ++++ ++
Sbjct: 370 GRDSLGGTAYMAFSMSLLFPLP-----KVDASKPFRLQLFANAGGLSNLTSPNPCGTYKS 424
Query: 465 LGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI 516
+ + IS G+GL + AR E+N+ P + D G+QFG GI F+
Sbjct: 425 ILSKPCISTGLGL-VYATPAARFELNFTLPIATTEKDIGRKGLQFGAGIDFM 475
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 120/286 (41%), Gaps = 35/286 (12%)
Query: 25 MLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQ----TEIFKSSTFGQLIFQCHEVRNQ 80
+L P + ++V G T I +K ++ KS + + + E
Sbjct: 35 ILAENSTLPVGISSIRVTGAHHTRPSFIRKVLKTCLDTSKPAKSRSLLETLNAIQETTGN 94
Query: 81 LERLQCFQQVQIEIDASKGPDATPEHGYEITFRVKELKRYRAGVTTSIGNNEGSVVVWGK 140
L ++ I+ID + + + ++T +VKE R T +GN EG+V
Sbjct: 95 LMAFNVYETANIKIDRASS-SVSGDDDLDVTIQVKEKPRLYVETGTDVGNVEGNVHANVL 153
Query: 141 MPNLYGRGELAEMSYVYGTKSLVYNLTLRKPFFGPIDSMLSGSL-------LRQVNEMPA 193
N++G EL + YGT++ T+ F P+++ L LR +
Sbjct: 154 ARNVFGGAELLSGNVSYGTRN---RSTMSVNFETPVNADPKTRLRFNGHSNLRDNKSI-- 208
Query: 194 SSCKLLEQGLILDYAILFPTIKNSIEWNG--------LIREIQPASRGTPFAIRESAGYT 245
SS LL +G+ L ++++ W+G L R++ + ++R AG +
Sbjct: 209 SSHDLLTKGITL-------SLQHQDLWSGEHLLSQNLLWRQVTHLTEYASPSVRLEAGDS 261
Query: 246 LKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLG---GDVGFQK 288
LK SL + + D RD ++P G + + ++E AG G GD F K
Sbjct: 262 LKQSLSYTYTRDTRDHLMIPTKGDYVRQTLELAGFGFLPGDASFLK 307
>sp|P53969|SAM50_YEAST Sorting assembly machinery 50 kDa subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SAM50 PE=1
SV=1
Length = 484
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 15/221 (6%)
Query: 301 LKSSLKFITSLDKRDDKILPRHGQFCQGSVEFA---GLGGDVGFQKYSSLFQVNYPLGPY 357
L++ L LDKRD + P G + S E + L + S ++
Sbjct: 274 LRTILGHTFVLDKRDHIMCPTKGSMLKWSNELSPGKHLKTQLELNSVKSWMNDDF----- 328
Query: 358 ITAQASLDAGLLGSFSQDKTFT--LCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYW 415
IT ++ G L + S ++ +CD+F GGP +RGF +G+GP+ ++GG +
Sbjct: 329 ITFSTTIKTGYLKNLSSQQSLPVHICDKFQSGGPSDIRGFQTFGLGPRDLYDAVGGDAFV 388
Query: 416 QGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGI 475
+++ LP+ K K NFRL++F N G + + + + + +L +E S GI
Sbjct: 389 SYGLSVFSRLPWKKVEKS----NFRLHWFFNGGKLVNHDNTSLGNCIGQLSKEHSTSTGI 444
Query: 476 GLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI 516
GL +R +AR E+N+ P + +D + G QFG G+ F+
Sbjct: 445 GLVLRHP-MARFELNFTLPITAHENDLIRKGFQFGLGLAFL 484
>sp|C6V5K2|BAMA_NEORI Outer membrane protein assembly factor BamA OS=Neorickettsia
risticii (strain Illinois) GN=bamA PE=3 SV=1
Length = 738
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 32/187 (17%)
Query: 303 SSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQK-------YSSLFQVNYPLG 355
S++ + L+K D+ +PR+G + +FAG+GGDV F + + S+F + L
Sbjct: 538 SAVSYSLFLNKLDNYFVPRYGYGVRFGNKFAGIGGDVKFLRSDFKAGGFVSVFDQSAVLS 597
Query: 356 PYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPK--SGGSSLGGTV 413
+ A + G Q + +RFFL +RGF + GIGP+ +LGG
Sbjct: 598 LIVRA-----GNIFGYSGQ--GVDVANRFFLN---EMRGFDNLGIGPRDVETDDALGGNF 647
Query: 414 YWQGAYHIYTP--LPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRI 471
+ G + P LP K + FF G+ ++ ++T++ LR
Sbjct: 648 FILGTAEVQVPMRLPVELDLKAA--------FFYEVGT---LTGVDVTTEKVYDSHALRS 696
Query: 472 SYGIGLA 478
S G GL
Sbjct: 697 SVGAGLV 703
Score = 39.7 bits (91), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 234 TPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQK 288
P +++ SAG + S++ + L+K D+ +PR+G + +FAG+GGDV F +
Sbjct: 524 APESVKSSAGTKILSAVSYSLFLNKLDNYFVPRYGYGVRFGNKFAGIGGDVKFLR 578
>sp|Q9K1H0|BAMA_NEIMB Outer membrane protein assembly factor BamA OS=Neisseria
meningitidis serogroup B (strain MC58) GN=bamA PE=1 SV=1
Length = 797
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 89/228 (39%), Gaps = 33/228 (14%)
Query: 312 DKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQVNY--PLGPYITAQASLDAGLL 369
+K D + P G + E A G + Q YS+ + PL T + G+
Sbjct: 579 NKTDSALWPTRGYLTGVNAEIALPGSKL--QYYSATHNQTWFFPLSKTFTLMLGGEVGIA 636
Query: 370 GSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGS-----SLGGTVYWQGAYHIYTP 424
G + + K + F+ GG +RG+ +GPK S GG + + P
Sbjct: 637 GGYGRTKEIPFFENFYGGGLGSVRGYESGTLGPKVYDEYGEKISYGGNKKANVSAELLFP 696
Query: 425 LPFTKPTKGSFSDNFRLNFFANAGSI------QDMSASEITSKWRKL-----------GE 467
+P K + RL+ FA+AGS+ D S+S + + +
Sbjct: 697 MPGAKDAR-----TVRLSLFADAGSVWDGKTYDDNSSSATGGRVQNIYGAGNTHKSTFTN 751
Query: 468 ELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515
ELR S G G + L ++ +Y +P + +D + QF G TF
Sbjct: 752 ELRYSAG-GAVTWLSPLGPMKFSYAYPLKKKPEDE-IQRFQFQLGTTF 797
>sp|B1JQG8|BAMA_YERPY Outer membrane protein assembly factor BamA OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=bamA
PE=3 SV=1
Length = 795
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 27/160 (16%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKS-----GGSS-------LGGTVYWQGAYHIYT 423
K + F+ GG +RGF IGPK+ GG++ +GG + + T
Sbjct: 643 KEMPFYENFYAGGSSTVRGFRSNNIGPKAAYYANGGATVTNSTDAVGGNAMAVASIELIT 702
Query: 424 PLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLG-------EELRISYGIG 476
P PF +S++ R + F ++G++ D + E T+K R G +R+S G+
Sbjct: 703 PTPFISE---KYSNSVRTSIFIDSGTVWDTNW-ENTAKTRAAGIPDYGKASNIRVSAGVA 758
Query: 477 LAIRFAGLARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
L + L + +Y P Y+ D S QF G T+
Sbjct: 759 LQW-MSPLGPLVFSYAKPVKDYEGDKS--EQFQFNIGKTW 795
>sp|Q667J7|BAMA_YERPS Outer membrane protein assembly factor BamA OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=bamA
PE=3 SV=1
Length = 795
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 27/160 (16%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKS-----GGSS-------LGGTVYWQGAYHIYT 423
K + F+ GG +RGF IGPK+ GG++ +GG + + T
Sbjct: 643 KEMPFYENFYAGGSSTVRGFRSNNIGPKAAYYANGGATVTNSTDAVGGNAMAVASIELIT 702
Query: 424 PLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLG-------EELRISYGIG 476
P PF +S++ R + F ++G++ D + E T+K R G +R+S G+
Sbjct: 703 PTPFISE---KYSNSVRTSIFIDSGTVWDTNW-ENTAKTRAAGIPDYGKASNIRVSAGVA 758
Query: 477 LAIRFAGLARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
L + L + +Y P Y+ D S QF G T+
Sbjct: 759 LQW-MSPLGPLVFSYAKPVKDYEGDKS--EQFQFNIGKTW 795
>sp|A4TL83|BAMA_YERPP Outer membrane protein assembly factor BamA OS=Yersinia pestis
(strain Pestoides F) GN=bamA PE=3 SV=1
Length = 795
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 27/160 (16%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKS-----GGSS-------LGGTVYWQGAYHIYT 423
K + F+ GG +RGF IGPK+ GG++ +GG + + T
Sbjct: 643 KEMPFYENFYAGGSSTVRGFRSNNIGPKAAYYANGGATVTNSTDAVGGNAMAVASIELIT 702
Query: 424 PLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLG-------EELRISYGIG 476
P PF +S++ R + F ++G++ D + E T+K R G +R+S G+
Sbjct: 703 PTPFISE---KYSNSVRTSIFIDSGTVWDTNW-ENTAKTRAAGIPDYGKASNIRVSAGVA 758
Query: 477 LAIRFAGLARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
L + L + +Y P Y+ D S QF G T+
Sbjct: 759 LQW-MSPLGPLVFSYAKPVKDYEGDKS--EQFQFNIGKTW 795
>sp|Q1CFF5|BAMA_YERPN Outer membrane protein assembly factor BamA OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=bamA PE=3 SV=1
Length = 795
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 27/160 (16%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKS-----GGSS-------LGGTVYWQGAYHIYT 423
K + F+ GG +RGF IGPK+ GG++ +GG + + T
Sbjct: 643 KEMPFYENFYAGGSSTVRGFRSNNIGPKAAYYANGGATVTNSTDAVGGNAMAVASIELIT 702
Query: 424 PLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLG-------EELRISYGIG 476
P PF +S++ R + F ++G++ D + E T+K R G +R+S G+
Sbjct: 703 PTPFISE---KYSNSVRTSIFIDSGTVWDTNW-ENTAKTRAAGIPDYGKASNIRVSAGVA 758
Query: 477 LAIRFAGLARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
L + L + +Y P Y+ D S QF G T+
Sbjct: 759 LQW-MSPLGPLVFSYAKPVKDYEGDKS--EQFQFNIGKTW 795
>sp|A9R388|BAMA_YERPG Outer membrane protein assembly factor BamA OS=Yersinia pestis bv.
Antiqua (strain Angola) GN=bamA PE=3 SV=1
Length = 795
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 27/160 (16%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKS-----GGSS-------LGGTVYWQGAYHIYT 423
K + F+ GG +RGF IGPK+ GG++ +GG + + T
Sbjct: 643 KEMPFYENFYAGGSSTVRGFRSNNIGPKAAYYANGGATVTNSTDAVGGNAMAVASIELIT 702
Query: 424 PLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLG-------EELRISYGIG 476
P PF +S++ R + F ++G++ D + E T+K R G +R+S G+
Sbjct: 703 PTPFISE---KYSNSVRTSIFIDSGTVWDTNW-ENTAKTRAAGIPDYGKASNIRVSAGVA 758
Query: 477 LAIRFAGLARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
L + L + +Y P Y+ D S QF G T+
Sbjct: 759 LQW-MSPLGPLVFSYAKPVKDYEGDKS--EQFQFNIGKTW 795
>sp|Q8ZH58|BAMA_YERPE Outer membrane protein assembly factor BamA OS=Yersinia pestis
GN=bamA PE=3 SV=1
Length = 795
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 27/160 (16%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKS-----GGSS-------LGGTVYWQGAYHIYT 423
K + F+ GG +RGF IGPK+ GG++ +GG + + T
Sbjct: 643 KEMPFYENFYAGGSSTVRGFRSNNIGPKAAYYANGGATVTNSTDAVGGNAMAVASIELIT 702
Query: 424 PLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLG-------EELRISYGIG 476
P PF +S++ R + F ++G++ D + E T+K R G +R+S G+
Sbjct: 703 PTPFISE---KYSNSVRTSIFIDSGTVWDTNW-ENTAKTRAAGIPDYGKASNIRVSAGVA 758
Query: 477 LAIRFAGLARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
L + L + +Y P Y+ D S QF G T+
Sbjct: 759 LQW-MSPLGPLVFSYAKPVKDYEGDKS--EQFQFNIGKTW 795
>sp|B2JZ26|BAMA_YERPB Outer membrane protein assembly factor BamA OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=bamA
PE=3 SV=1
Length = 795
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 27/160 (16%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKS-----GGSS-------LGGTVYWQGAYHIYT 423
K + F+ GG +RGF IGPK+ GG++ +GG + + T
Sbjct: 643 KEMPFYENFYAGGSSTVRGFRSNNIGPKAAYYANGGATVTNSTDAVGGNAMAVASIELIT 702
Query: 424 PLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLG-------EELRISYGIG 476
P PF +S++ R + F ++G++ D + E T+K R G +R+S G+
Sbjct: 703 PTPFISE---KYSNSVRTSIFIDSGTVWDTNW-ENTAKTRAAGIPDYGKASNIRVSAGVA 758
Query: 477 LAIRFAGLARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
L + L + +Y P Y+ D S QF G T+
Sbjct: 759 LQW-MSPLGPLVFSYAKPVKDYEGDKS--EQFQFNIGKTW 795
>sp|Q1CAM6|BAMA_YERPA Outer membrane protein assembly factor BamA OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=bamA PE=3 SV=1
Length = 795
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 27/160 (16%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKS-----GGSS-------LGGTVYWQGAYHIYT 423
K + F+ GG +RGF IGPK+ GG++ +GG + + T
Sbjct: 643 KEMPFYENFYAGGSSTVRGFRSNNIGPKAAYYANGGATVTNSTDAVGGNAMAVASIELIT 702
Query: 424 PLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLG-------EELRISYGIG 476
P PF +S++ R + F ++G++ D + E T+K R G +R+S G+
Sbjct: 703 PTPFISE---KYSNSVRTSIFIDSGTVWDTNW-ENTAKTRAAGIPDYGKASNIRVSAGVA 758
Query: 477 LAIRFAGLARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
L + L + +Y P Y+ D S QF G T+
Sbjct: 759 LQW-MSPLGPLVFSYAKPVKDYEGDKS--EQFQFNIGKTW 795
>sp|A7FFH7|BAMA_YERP3 Outer membrane protein assembly factor BamA OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=bamA PE=3 SV=1
Length = 795
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 27/160 (16%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKS-----GGSS-------LGGTVYWQGAYHIYT 423
K + F+ GG +RGF IGPK+ GG++ +GG + + T
Sbjct: 643 KEMPFYENFYAGGSSTVRGFRSNNIGPKAAYYANGGATVTNSTDAVGGNAMAVASIELIT 702
Query: 424 PLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLG-------EELRISYGIG 476
P PF +S++ R + F ++G++ D + E T+K R G +R+S G+
Sbjct: 703 PTPFISE---KYSNSVRTSIFIDSGTVWDTNW-ENTAKTRAAGIPDYGKASNIRVSAGVA 758
Query: 477 LAIRFAGLARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
L + L + +Y P Y+ D S QF G T+
Sbjct: 759 LQW-MSPLGPLVFSYAKPVKDYEGDKS--EQFQFNIGKTW 795
>sp|A4W6S2|BAMA_ENT38 Outer membrane protein assembly factor BamA OS=Enterobacter sp.
(strain 638) GN=bamA PE=3 SV=1
Length = 805
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 34/168 (20%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKS---GGS------------------SLGGTVY 414
K + F+ GG +RGF IGPK+ GG+ ++GG
Sbjct: 644 KELPFYENFYAGGSSTVRGFQSNNIGPKAVYYGGNDKDNCNKTSSSEVCSSDDAVGGNAM 703
Query: 415 WQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLG-------E 467
+ I TP PF ++++ R +FF +AG++ D + E T++ + G
Sbjct: 704 GVASLEIITPTPFISD---KYANSVRTSFFWDAGTVWDTNW-ENTAQMKAAGVPDYSDPS 759
Query: 468 ELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515
+R+S GI L + L + +Y P+ + D QF G T+
Sbjct: 760 NIRMSAGIALQW-MSPLGPLVFSYAQPFK-KYDGDKAEQFQFNIGKTW 805
>sp|C5B7R5|BAMA_EDWI9 Outer membrane protein assembly factor BamA OS=Edwardsiella
ictaluri (strain 93-146) GN=bamA PE=3 SV=1
Length = 795
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 27/160 (16%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKS---------------GGSSLGGTVYWQGAYH 420
K + F+ GG +RGF IGPK+ G ++GG +
Sbjct: 643 KEMPFYENFYAGGSGSVRGFQSNNIGPKAVYLNSDGSVDQNKTGGNDAVGGNAMAVASLE 702
Query: 421 IYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEIT----SKWRKLGEELRISYGIG 476
+ TP PF ++++ R + F +AG++ D + + T + K +R+S GI
Sbjct: 703 LITPTPFVSE---QYANSLRTSVFMDAGTVWDTNWDQTTYPTLPDYSK-ATNVRLSAGIA 758
Query: 477 LAIRFAGLARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
L + L + +Y P Y+ D S QF G T+
Sbjct: 759 LQW-MSPLGPLVFSYAQPVKKYEGDKS--EQFQFNIGKTW 795
>sp|A7MGT7|BAMA_CROS8 Outer membrane protein assembly factor BamA OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=bamA PE=3 SV=1
Length = 804
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 33/167 (19%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPK--------------------SGGSSLGGTVYW 415
K + F+ GG +RGF IGPK S ++GG
Sbjct: 644 KEMPFYENFYAGGSSTVRGFQSNNIGPKAVYYSGPGLDNCDKAVGGYCSSDDAVGGNAMG 703
Query: 416 QGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLG-------EE 468
+ TP PF ++++ R + FA+AGS+ D + T+ R G
Sbjct: 704 VASLEFITPTPFLSE---KYANSVRTSLFADAGSVWDTNWKN-TAAMRAAGVPDYSDPSN 759
Query: 469 LRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515
+R+S GI L + L + +Y P+ D QF G T+
Sbjct: 760 IRMSAGIALQW-MSPLGPLVFSYAQPFKKYEGDK-AEQFQFNIGKTW 804
>sp|O25369|BAMA_HELPY Outer membrane protein assembly factor BamA OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=bamA PE=3 SV=1
Length = 916
Score = 38.9 bits (89), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 65/169 (38%), Gaps = 34/169 (20%)
Query: 301 LKSSLKFITSLDKRDDKILPRHGQF-----------CQGSVE-FAGLGGDVGFQKYSSLF 348
+ SS S D DD PR+G G++ + GLGG+V K F
Sbjct: 661 ITSSFTLDVSYDNTDDYYFPRNGVIFSSYATMSGLPSSGTLNSWNGLGGNVRNTKVYGKF 720
Query: 349 QVNYPLGPYI----TAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKS 404
+ L Y+ A+ G + ++ D L F++GG +RGF + + PK
Sbjct: 721 AAYHHLQKYLLIDLIARFKTQGGYIFRYNTDDYLPLNSTFYMGGVTTVRGFRNGSVTPKD 780
Query: 405 G-GSSLGG----TVYWQGAYHIYTP-------------LPFTKPTKGSF 435
G LGG T + +Y + L F PT+GSF
Sbjct: 781 EFGLWLGGDGIFTASTELSYGVLKAAKMRLAWFFDFGFLTFKTPTRGSF 829
>sp|Q9S341|BAMA_PHOLU Outer membrane protein assembly factor BamA OS=Photorhabdus
luminescens GN=bamA PE=3 SV=1
Length = 797
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 29/162 (17%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKS-----GGS---------SLGGTVYWQGAYHI 421
K + F+ GG +RGF IGPK+ GS ++GG + +
Sbjct: 643 KELPFYENFYAGGSSTVRGFRSNNIGPKAIYLYKDGSPKKESPSRDAVGGNAMAVASLEL 702
Query: 422 YTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASE---ITSK----WRKLGEELRISYG 474
TP PF +S++ R +FF ++G++ D ++ + SK + K G +R+S G
Sbjct: 703 ITPTPF---LDSKYSNSVRTSFFIDSGTVWDTDWNDSAVMKSKGIPDYSKPG-NIRVSAG 758
Query: 475 IGLAIRFAGLARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
I L + L + +Y P Y+ D S QF G T+
Sbjct: 759 IALQW-MSPLGPLVFSYAKPIKDYEGDRS--EQFQFNIGKTW 797
>sp|Q7N8N9|BAMA_PHOLL Outer membrane protein assembly factor BamA OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=bamA PE=3
SV=1
Length = 797
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 25/160 (15%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKS--------------GGSSLGGTVYWQGAYHI 421
K + F+ GG +RGF IGPK+ ++GG + +
Sbjct: 643 KELPFYENFYAGGSSTVRGFRSNNIGPKAIYMNGKDDPKKDSPSRDAVGGNAMAVASLEL 702
Query: 422 YTPLPFTKPTKGSFSDNFRLNFFANAGSIQDM----SASEITSKWRKLGEELRISYGIGL 477
TP PF +S++ R +FF ++G++ D SA+ S G+ I G+
Sbjct: 703 ITPTPF---LDSKYSNSVRTSFFIDSGTVWDTYWNDSAAMKGSGIPDYGKPGNIRVSAGI 759
Query: 478 AIRFAG-LARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
A+++ L + +Y P Y+ D S QF G T+
Sbjct: 760 ALQWVSPLGPLVFSYAKPIKDYEGDRS--EQFQFNIGKTW 797
>sp|A8GID8|BAMA_SERP5 Outer membrane protein assembly factor BamA OS=Serratia
proteamaculans (strain 568) GN=bamA PE=3 SV=1
Length = 801
Score = 35.8 bits (81), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 31/165 (18%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKSG------------------GSSLGGTVYWQG 417
K + F+ GG +RGF IGPK+ ++GG
Sbjct: 643 KEMPFYENFYAGGSSTVRGFGSNTIGPKAAYYNSNSYGCSNGTPICNSDDAVGGNAMAVA 702
Query: 418 AYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEI--TSKWR----KLGEELRI 471
+ + TP PF ++++ R + F +AG++ D + TS + +R+
Sbjct: 703 SMELITPTPFISE---KYANSVRTSLFMDAGTVWDTNWQNTAQTSMYDIPDYSKASNIRV 759
Query: 472 SYGIGLAIRFAGLARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
S GI L + L + +Y P Y+ D S QF G T+
Sbjct: 760 SAGIALQW-MSPLGPLVFSYANPIKKYEGDKS--EQFQFNIGKTW 801
>sp|Q2NRL5|BAMA_SODGM Outer membrane protein assembly factor BamA OS=Sodalis glossinidius
(strain morsitans) GN=bamA PE=3 SV=1
Length = 808
Score = 35.8 bits (81), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 30/128 (23%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKSG-------------------GSSLGGTVYWQ 416
K D F+ GG +RGF IGPK+ ++GG
Sbjct: 649 KNVPFYDNFYAGGSNTVRGFRSNTIGPKAAYYKCNSGNTRYSDCPVDKSSDAVGGNAMAI 708
Query: 417 GAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLG-------EEL 469
+ + P PF ++++ R + F + G++ D S TS R G +
Sbjct: 709 ASAELIMPTPFLSE---KYANSVRTSLFVDGGTVWDTSWQN-TSATRAAGIPDYSDPGNI 764
Query: 470 RISYGIGL 477
RIS GI L
Sbjct: 765 RISSGIAL 772
>sp|B2VE18|BAMA_ERWT9 Outer membrane protein assembly factor BamA OS=Erwinia tasmaniensis
(strain DSM 17950 / Et1/99) GN=bamA PE=3 SV=1
Length = 803
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 33/167 (19%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPKSG----GSS----------------LGGTVYW 415
K + F+ GG +RGF IGPK+ GSS +GG
Sbjct: 643 KELPFYENFYAGGSSTVRGFRSNTIGPKAAYYNNGSSNCSGSDVAKICSSDDAVGGNAMA 702
Query: 416 QGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITS-------KWRKLGEE 468
+ + TP PF ++++ R + F +AG++ D + + + K G
Sbjct: 703 VASAELITPTPFLSE---KYANSVRTSLFVDAGTVWDTHWDDTAATLGAGVPDYSKPG-N 758
Query: 469 LRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515
+R+S G+ L + L + +Y P+ + D QF G T+
Sbjct: 759 IRMSAGLALQW-MSPLGPLVFSYAQPFK-KYDGDKAEQFQFNIGKTW 803
>sp|O32629|BAMA2_HAEIF Outer membrane protein assembly factor BamA OS=Haemophilus
influenzae GN=bamA PE=3 SV=1
Length = 793
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 77/207 (37%), Gaps = 35/207 (16%)
Query: 336 GGDVGFQKYSSLFQVNYPLGP----YITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLG 391
G D + K S+ Q YPL ++A+AS AG F +K + GG
Sbjct: 595 GSDNKYYKLSADVQGFYPLDRDHRWVVSAKAS--AGYANGFG-NKRLPFYQTYTAGGIGS 651
Query: 392 LRGFAHYGIGP-------------KSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDN 438
LRGFA+ IGP K +GG + + P PF +
Sbjct: 652 LRGFAYGSIGPNAIYAEHGNGTFNKISSDVIGGNAITTASAELIVPTPFVSDKS---QNT 708
Query: 439 FRLNFFANAGSIQDMS--------ASEITSKWRKLGEELRISYGIGLAIRFAG-LARVEI 489
R + F +A S+ + S++ G+ RI G+ ++ + +
Sbjct: 709 VRTSLFVDAASVWNTKWKSDKNGLESKVLKDLPDYGKSSRIRASTGVGFQWQSPIGPLVF 768
Query: 490 NYCFPY-SYQRDDSVVPGMQFGFGITF 515
+Y P Y+ DD V QF G +F
Sbjct: 769 SYAKPIKKYENDD--VEQFQFSIGGSF 793
>sp|P46024|BAMA1_HAEIF Outer membrane protein assembly factor BamA OS=Haemophilus
influenzae GN=bamA PE=3 SV=1
Length = 797
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 78/211 (36%), Gaps = 39/211 (18%)
Query: 336 GGDVGFQKYSSLFQVNYPLGP----YITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLG 391
G D + K S+ Q YPL ++A+AS AG F +K + GG
Sbjct: 595 GSDNKYYKLSADVQGFYPLDRDHLWVVSAKAS--AGYANGFG-NKRLPFYQTYTAGGIGS 651
Query: 392 LRGFAHYGIGP-----------------KSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGS 434
LRGFA+ IGP K +GG + + P PF
Sbjct: 652 LRGFAYGSIGPNAIYAEYGNGSGTGTFKKISSDVIGGNAIATASAELIVPTPFVSDKS-- 709
Query: 435 FSDNFRLNFFANAGSIQDMS--------ASEITSKWRKLGEELRISYGIGLAIRFAG-LA 485
+ R + F +A S+ + S++ + G+ RI G+ ++ +
Sbjct: 710 -QNTVRTSLFVDAASVWNTKWKSDKNGLESDVLKRLPDYGKSSRIRASTGVGFQWQSPIG 768
Query: 486 RVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
+ +Y P Y+ DD V QF G +F
Sbjct: 769 PLVFSYAKPIKKYENDD--VEQFQFSIGGSF 797
>sp|P44038|TAMA_HAEIN Translocation and assembly module TamA OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tama PE=1
SV=1
Length = 578
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 25/132 (18%)
Query: 383 RFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLN 442
RFF GG +RG+ + I PK+ L G G+ + T L + + N+
Sbjct: 467 RFFAGGDRSVRGYGYKKIAPKNRNGKLVG-----GSRLLTTSLEY----QYQVYPNWWAA 517
Query: 443 FFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAG-LARVEINYCFPYSYQRDD 501
FA++G ++A T+K ELR YG G+ +R+A + ++ + P RD
Sbjct: 518 TFADSG----LAADNYTAK------ELR--YGTGVGVRWASPVGAIKFDIATPI---RDK 562
Query: 502 SVVPGMQFGFGI 513
+QF G+
Sbjct: 563 DNSKNIQFYIGL 574
>sp|B5F8T8|BAMA_SALA4 Outer membrane protein assembly factor BamA OS=Salmonella agona
(strain SL483) GN=bamA PE=3 SV=1
Length = 803
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 64/171 (37%), Gaps = 37/171 (21%)
Query: 376 KTFTLCDRFFLGGPLGLRGFAHYGIGPK---------SGG-----------------SSL 409
K + F+ GG +RGF IGPK SGG ++
Sbjct: 639 KEMPFYENFYAGGSSTVRGFQSNTIGPKAVYKNGARTSGGDNDEYEDCTQESGCKSDDAV 698
Query: 410 GGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDM-----SASEITSKWRK 464
GG + TP PF ++++ R +FF + G++ D SA +
Sbjct: 699 GGNAMAVASLEFITPTPFISE---KYANSVRTSFFWDMGTVWDTNWDPSSAPSDVPDYSD 755
Query: 465 LGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515
G +R+S GI L + L + +Y P+ + D QF G T+
Sbjct: 756 PG-NIRMSAGIALQW-MSPLGPLVFSYAQPFK-KYDGDKAEQFQFNIGKTW 803
>sp|Q8K9S5|BAMA_BUCAP Outer membrane protein assembly factor BamA OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=bamA PE=3 SV=1
Length = 799
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 47/181 (25%)
Query: 366 AGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPK---------------------S 404
AG+ S +++K + F +RGF IGPK
Sbjct: 629 AGIGNSLNKEK-LPFYENFHAIDSNNIRGFRANTIGPKKIYINSNLEECLGYNKKSIFCE 687
Query: 405 GGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRK 464
S+GG + TP+P K F R +FF +AG+I D ++W K
Sbjct: 688 SVDSIGGNAMIISNLELITPIPLIKTEYSKF---LRSSFFLDAGNIWD-------TRWDK 737
Query: 465 -------------LGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGF 511
+ ++ S GI L F+ + + +Y +P Y+ ++ + QF F
Sbjct: 738 EQNIHFSQFPDYTILNNIQASIGISLQ-WFSPIGPLVFSYAYPI-YKNKNNQLEAFQFNF 795
Query: 512 G 512
G
Sbjct: 796 G 796
>sp|C6DAJ1|BAMA_PECCP Outer membrane protein assembly factor BamA OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=bamA PE=3
SV=1
Length = 809
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 61/172 (35%), Gaps = 35/172 (20%)
Query: 310 SLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQVNYPL---GPYIT---AQAS 363
S + D P G + + A G D + K + YPL G ++ +A
Sbjct: 581 SYNNLDRGYFPTKGTRASANAKIAVPGSDNEYYKLTFDSASYYPLTDSGKWVVMGRTRAG 640
Query: 364 LDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSG------------------ 405
GL G K D F+ GG +RGF IGPK+
Sbjct: 641 FADGLGG-----KEVPFYDNFYAGGSSTVRGFQSNTIGPKAAYYKCAVGATSYSNCPIDS 695
Query: 406 ---GSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMS 454
++GG + + P PF ++ + R +FF + G++ D +
Sbjct: 696 TNLDDAVGGNAMAVLSAELIVPTPFISD---KYASSVRTSFFVDGGTVWDTN 744
>sp|P44935|BAMA_HAEIN Outer membrane protein assembly factor BamA OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=bamA PE=3 SV=1
Length = 795
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 78/216 (36%), Gaps = 51/216 (23%)
Query: 336 GGDVGFQKYSSLFQVNYPLGP----YITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLG 391
G D + K S+ Q YPL ++A+AS AG F +K + GG
Sbjct: 595 GSDNKYYKLSADVQGFYPLDRDHLWVVSAKAS--AGYANGFG-NKRLPFYQTYTAGGIGS 651
Query: 392 LRGFAHYGIGP---------------KSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFS 436
LRGFA+ IGP K +GG + + P PF
Sbjct: 652 LRGFAYGSIGPNAIYAEHGNGNGTFKKISSDVIGGNAITTASAELIVPTPFVSDKS---Q 708
Query: 437 DNFRLNFFANAGSIQDMSASEITSKWRK---------------LGEELRISYGIGLAIRF 481
+ R + F +A S+ + +KW+ G+ RI G+ ++
Sbjct: 709 NTVRTSLFVDAASVWN-------TKWKSDKSGLDNNVLKSLPDYGKSSRIRASTGVGFQW 761
Query: 482 AG-LARVEINYCFPY-SYQRDDSVVPGMQFGFGITF 515
+ + +Y P Y+ DD V QF G +F
Sbjct: 762 QSPIGPLVFSYAKPIKKYENDD--VEQFQFSIGGSF 795
>sp|Q6D8D5|BAMA_ERWCT Outer membrane protein assembly factor BamA OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=bamA PE=3 SV=1
Length = 814
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 71/204 (34%), Gaps = 42/204 (20%)
Query: 310 SLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQVNYPL---GPYITAQASLDA 366
S + D P G + + A G D + K + YPL G ++ A
Sbjct: 581 SYNNLDRGYFPTKGTRASANAKIAVPGSDNEYYKLTFDSASYYPLTESGKWV-VMGRTRA 639
Query: 367 GLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSG--------------------- 405
G K D F+ GG +RGF IGPK+
Sbjct: 640 GFADGIGS-KEVPFYDNFYAGGSSTVRGFQSNTIGPKAAYYKCPANLVGSGFNSYSGCPI 698
Query: 406 -----GSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITS 460
++GG + + P PF ++++ R +FF + G++ D + E T+
Sbjct: 699 DSTNMDDAVGGNAMAVLSAELIVPTPFISD---KYANSVRTSFFVDGGTVWDTNW-ENTA 754
Query: 461 KWRKLG-------EELRISYGIGL 477
+ K G R+S GI L
Sbjct: 755 ETLKAGVPDYGKATNFRVSSGIAL 778
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,832,169
Number of Sequences: 539616
Number of extensions: 8582562
Number of successful extensions: 15997
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 15893
Number of HSP's gapped (non-prelim): 65
length of query: 516
length of database: 191,569,459
effective HSP length: 122
effective length of query: 394
effective length of database: 125,736,307
effective search space: 49540104958
effective search space used: 49540104958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)