Query psy2168
Match_columns 516
No_of_seqs 122 out of 1330
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 18:02:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4775 Outer membrane protein 100.0 2.5E-56 5.5E-61 483.0 46.5 418 24-515 334-766 (766)
2 PRK11067 outer membrane protei 100.0 3.7E-48 8.1E-53 435.3 50.5 440 16-515 327-803 (803)
3 TIGR03303 OM_YaeT outer membra 100.0 3.7E-46 8E-51 417.1 50.9 417 24-515 312-741 (741)
4 KOG2602|consensus 100.0 1.8E-48 4E-53 380.2 22.4 419 33-515 35-457 (457)
5 TIGR00992 3a0901s03IAP75 chlor 100.0 1.1E-42 2.3E-47 379.8 42.2 411 20-515 253-718 (718)
6 PLN03138 Protein TOC75; Provis 100.0 4E-38 8.6E-43 334.9 36.8 415 19-515 330-796 (796)
7 COG0729 Outer membrane protein 100.0 1.1E-37 2.5E-42 328.8 32.1 401 16-515 180-594 (594)
8 PF01103 Bac_surface_Ag: Surfa 100.0 8.3E-34 1.8E-38 285.6 35.0 311 143-515 1-323 (323)
9 COG2831 FhaC Hemolysin activat 99.9 8.4E-23 1.8E-27 216.4 37.1 392 25-515 142-554 (554)
10 PF03865 ShlB: Haemolysin secr 99.8 5.7E-18 1.2E-22 174.9 32.5 346 60-495 12-381 (404)
11 PF07244 Surf_Ag_VNR: Surface 98.3 3.9E-06 8.4E-11 65.5 8.0 72 34-117 1-78 (78)
12 COG4775 Outer membrane protein 98.1 0.0002 4.3E-09 79.4 20.1 102 15-123 242-347 (766)
13 TIGR03303 OM_YaeT outer membra 98.1 0.0024 5.2E-08 71.9 28.2 90 24-120 231-322 (741)
14 PRK11067 outer membrane protei 97.6 0.04 8.7E-07 62.8 28.1 90 23-120 255-347 (803)
15 PLN03138 Protein TOC75; Provis 96.3 0.03 6.5E-07 61.7 11.3 105 3-118 115-225 (796)
16 TIGR00992 3a0901s03IAP75 chlor 93.8 0.21 4.5E-06 55.9 8.5 76 35-122 109-184 (718)
17 PF08478 POTRA_1: POTRA domain 93.4 0.18 4E-06 37.8 5.1 68 35-117 2-69 (69)
18 PRK05529 cell division protein 89.8 1.2 2.6E-05 43.1 7.6 74 31-119 58-131 (255)
19 PF08479 POTRA_2: POTRA domain 79.3 11 0.00025 28.7 7.2 71 35-116 2-75 (76)
20 COG2831 FhaC Hemolysin activat 78.6 1.1E+02 0.0023 33.4 17.3 77 32-118 71-149 (554)
21 PF13505 OMP_b-brl: Outer memb 67.0 33 0.00071 29.8 8.3 90 415-515 86-176 (176)
22 COG0729 Outer membrane protein 65.9 1.3E+02 0.0028 33.0 13.7 36 248-284 402-439 (594)
23 COG1589 FtsQ Cell division sep 63.7 17 0.00036 35.5 6.0 69 34-118 60-129 (269)
24 PRK09408 ompX outer membrane p 58.2 67 0.0015 29.0 8.4 45 468-515 127-171 (171)
25 PRK10775 cell division protein 47.6 58 0.0012 31.9 6.8 74 32-119 54-128 (276)
26 PF06316 Ail_Lom: Enterobacter 45.3 35 0.00077 31.4 4.5 45 468-515 155-199 (199)
27 PF10082 DUF2320: Uncharacteri 39.6 4.2E+02 0.0092 26.9 15.9 28 201-228 297-325 (381)
28 PRK15240 resistance to complem 39.6 70 0.0015 29.3 5.6 44 469-515 142-185 (185)
29 PF11059 DUF2860: Protein of u 33.9 4.8E+02 0.01 25.9 11.9 63 163-227 170-232 (297)
30 PF01389 OmpA_membrane: OmpA-l 33.8 3.6E+02 0.0079 24.4 9.4 29 466-494 123-151 (183)
31 PF01103 Bac_surface_Ag: Surfa 32.7 33 0.00071 33.7 2.6 12 360-371 153-164 (323)
No 1
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.5e-56 Score=482.99 Aligned_cols=418 Identities=25% Similarity=0.403 Sum_probs=342.4
Q ss_pred ccccccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCC
Q psy2168 24 AMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDAT 103 (516)
Q Consensus 24 ~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~ 103 (516)
..+.+.++.+++|++|.|+||.+|+|+||+|+|+++| |+.|+..+ ++..++||+++|+|++|++.+.|. ..
T Consensus 334 v~~~V~~g~~~~V~~i~i~gn~rT~D~VIrRE~~~~e---Gd~fn~~~--v~~~~~rL~~lgyF~~V~i~~~~~----~~ 404 (766)
T COG4775 334 VVFRVDEGDRVYVRRIRIRGNTRTKDYVIRREMRLKE---GDVFNRKL--VQRGKRRLRRLGYFESVNIDTAPG----SG 404 (766)
T ss_pred EEEEEEcCCceeeeeeeecCCCccccHHhhhhhhcCC---cchhhHHH--HHHHHHHHHhcCCceeeEEEeccC----CC
Confidence 5667779999999999999999999999999999766 99998633 368999999999999999997653 34
Q ss_pred CCCcEEEEEEEEecceeeEEEEEeecCcce-EEEEEEeeeccCCCceEEEEEEEeeEEeEEEEEEEeccccCCCCceEEE
Q psy2168 104 PEHGYEITFRVKELKRYRAGVTTSIGNNEG-SVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTLRKPFFGPIDSMLSG 182 (516)
Q Consensus 104 ~~~~v~l~i~v~E~~~~~~~~~~~~g~~~g-~~~l~~~~~Nl~G~g~~l~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 182 (516)
+ +.|||+|+|+|+++-+++++++|++.+| .+.++++..|++|+|+.+++++..+...+.++++|+.|++...++++++
T Consensus 405 ~-~~vdvvv~VkE~~Tgsi~~G~Gy~s~~gl~~~~s~~e~N~~G~G~~~~~~~~~g~~~~~~~l~ft~P~f~~~~~slg~ 483 (766)
T COG4775 405 S-DQVDVVVDVKERSTGSINFGLGYGSDSGLSGFASLSERNFLGTGQSLSLNANLGDKQTSYSLSFTDPYFLDDRVSLGF 483 (766)
T ss_pred C-CeEEEEEEEEecCceeEEecccccCCCceEEEEEEEEeecCccccEEEEEEEeccceEEEEEEEecccccCCCceeEE
Confidence 4 5899999999999878888888999888 8999999999999999999999999998899999999999999999999
Q ss_pred EEEEeecc---cCcc--cceeeeeeEEEEEeEeec-CeEEEEEEEEEEEEecCCCCCC-----hHHHHHhhCCCccceeE
Q psy2168 183 SLLRQVNE---MPAS--SCKLLEQGLILDYAILFP-TIKNSIEWNGLIREIQPASRGT-----PFAIRESAGYTLKSSLK 251 (516)
Q Consensus 183 ~~~~~~~~---~~~~--~y~~~~~g~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~ 251 (516)
+++++..+ .... +|...+.|+.+++++|+. +++++++|.+.+..+....... +.....+.++...
T Consensus 484 ~~f~~~~~~~~~~~~~~~y~~~~~G~~~~lg~pi~e~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 559 (766)
T COG4775 484 NLFSNRYDTFDADTANDSYRVKTYGGGVSLGRPITENLSLGLGYGYEQNSLSLLNKSPPDEYASLGVKLQGGKSDL---- 559 (766)
T ss_pred EeEeeeecccccccccccceEeeccceEEecccccCCceEEEEEEEEEEEeeccccCccccccccccccccCccee----
Confidence 99998762 1233 789999999999999999 7999999999888877532110 0000011111222
Q ss_pred EEEEEecCCCCCCCCCcceeeeeeeeecCCCCcccccccccceeeeceeecccceeeeeccccCCCCCCCCCccccceee
Q psy2168 252 FITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVE 331 (516)
Q Consensus 252 ~~~~~d~~d~~~~p~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~ 331 (516)
..+.+.++||++|+.++||+|+.++...+
T Consensus 560 ---------------------------------------------------~~~s~~~tyD~rD~~~~Pt~G~~~~~~~e 588 (766)
T COG4775 560 ---------------------------------------------------SSLSLGWTYDTRDNALFPTKGSYLSLTQE 588 (766)
T ss_pred ---------------------------------------------------EEEEEeEEEcCCCCcCCCCCCeEEeeeeE
Confidence 34455556666666666666666666666
Q ss_pred eeccCCcceeeeEEEEEEEEEecCCCc-EEEEEeeeeeeecCCCCCccCcccceeeCCCCCccCCCCCCCCcCCC-CCCC
Q psy2168 332 FAGLGGDVGFQKYSSLFQVNYPLGPYI-TAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSG-GSSL 409 (516)
Q Consensus 332 ~~~~g~d~~f~k~~~~~~~~~~l~~~~-~l~~~~~~G~i~~~~~~~~lp~~e~f~lGG~~~vRGy~~~~igp~~~-~~~~ 409 (516)
++++|+|..|+|+++++++|+||.+.. ++.++..+|+..+++. ..+|++|+|++||.++||||..+.+||++. .+.+
T Consensus 589 ~~~~Ggd~~~~K~~~~~~~Y~~l~~~~~~l~~~~~~g~~~~~g~-~~~p~~e~F~~GG~~svRGf~~~~igp~~~~~~~~ 667 (766)
T COG4775 589 VAGLGGDIKYYKLELDGSKYYPLTDYIFTLSLRGEVGYGKGYGT-KLLPIYERFYLGGSNSVRGFESGGLGPKDGYTDAL 667 (766)
T ss_pred EeccCCcceEEEEEEEEEEEEEcccccEEEEEEEEEEEeeccCC-cccccccceeeCCCccccceecCCcCCcccccccc
Confidence 667788899999999999999999865 8899999999999976 458999999999999999999999999984 4789
Q ss_pred cceeEEEeeEEEEeeCCCCCCCCCCCCCCceEEEEEecccccccCchh-hhhhhhhcccCeeeeeeEEEEEeecceeEEE
Q psy2168 410 GGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASE-ITSKWRKLGEELRISYGIGLAIRFAGLARVE 488 (516)
Q Consensus 410 gG~~~~~~~~El~~~l~~~~~~~~~~~~~l~~~~F~D~G~~~~~~~~~-~~~~~~~~~~~~~~s~G~Gir~~~t~~g~i~ 488 (516)
||+.++.+++|++||+++ .+. ..+++++|+|+|.+|+..... ....+......++.|+|+|++| .+|+|||+
T Consensus 668 GG~~~~~~S~El~fPl~~-~~~-----~~~r~~lF~D~G~v~~~~~~~~~~~~~~~~~~~~r~S~Gvgl~w-~sP~gPlr 740 (766)
T COG4775 668 GGTSYFVASAELRFPLPK-VIG-----SGVRGALFFDAGSVWNTGTDPSTVRNFYGSGSELRASAGVGLRW-ASPLGPLR 740 (766)
T ss_pred CceEEEEEEEEEEeecCC-CCC-----cceEEEEEEEcccccccCcccccccCCcCcCcceeEEeeeeEEE-ecCCCcEE
Confidence 999999999999999986 331 159999999999999964100 0001111122589999999999 59999999
Q ss_pred EEEEeeccccCCCCccccEEEEeeecC
Q psy2168 489 INYCFPYSYQRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 489 l~~a~~l~~~~~d~~~~~~~f~ig~~F 515 (516)
++||+|+....+|..++ |+|+||..|
T Consensus 741 ~d~a~pi~~~~~D~~q~-F~F~iG~~F 766 (766)
T COG4775 741 FDYAFPIKKKEGDDTQR-FQFGLGTRF 766 (766)
T ss_pred EEeecccccCCCCccee-EEEEccccC
Confidence 99999999888888766 999999987
No 2
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=100.00 E-value=3.7e-48 Score=435.31 Aligned_cols=440 Identities=19% Similarity=0.273 Sum_probs=336.3
Q ss_pred CCCCCccc--ccccccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEE
Q psy2168 16 ELDSDPND--AMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIE 93 (516)
Q Consensus 16 ~~~~~~~~--~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~ 93 (516)
++|.+.+. ..+.+.+|++++|++|.|+|+.++++++|+|++++.+ |++++. .++++++++|.++|+|++|++.
T Consensus 327 ~~~~~~~~v~i~~~v~eG~~y~ig~I~i~Gn~~~~~~~l~r~l~~~~---G~~~~~--~~l~~~~~~L~~~g~F~~V~~~ 401 (803)
T PRK11067 327 EINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQME---GAWLGS--DLVEQGKERLNRLGFFETVDVD 401 (803)
T ss_pred ccCCCCCEEEEEEEEeeCCeEEEEEEEEECCccccchhhhhheeccc---cccCCH--HHHHHHHHHHHhcCCcccCccc
Confidence 44444444 3466789999999999999999999999999999655 888864 2335799999999999999998
Q ss_pred EecCCCCCCCCCCcEEEEEEEEecceeeEEEEEeecCcce-EEEEEEeeeccCCCceEEEEEEEeeEEeEEEEEEEeccc
Q psy2168 94 IDASKGPDATPEHGYEITFRVKELKRYRAGVTTSIGNNEG-SVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTLRKPF 172 (516)
Q Consensus 94 ~~~~~~~~~~~~~~v~l~i~v~E~~~~~~~~~~~~g~~~g-~~~l~~~~~Nl~G~g~~l~~~~~~~~~~~~~~~~~~~P~ 172 (516)
+.+. + ..+ +.++|++.|+|+++..+.++++|++++| .+.++++++|+||.|+++++.++.+...+.+.++|..||
T Consensus 402 ~~~~--~-~~~-~~v~l~v~v~e~~~~~~~~g~gy~s~~g~~~~~~~~~~N~~G~G~~l~l~~~~s~~~~~~~l~~~~P~ 477 (803)
T PRK11067 402 TQRV--P-GSP-DQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPY 477 (803)
T ss_pred cccC--C-CCC-CeEEEEEEEEEccCCcEEEEeeecCcCCEEEEEEEEecccCCcCcEEEEEEEeccceEEEEEEEeCCc
Confidence 6542 2 245 6899999999998888888999998777 899999999999999999999999988778999999999
Q ss_pred cCCCCceEEEEEEEeeccc---CcccceeeeeeEEEEEeEeec-CeEEEEEEEEEEEEecCCCCCCh-HHHHHhhCCCcc
Q psy2168 173 FGPIDSMLSGSLLRQVNEM---PASSCKLLEQGLILDYAILFP-TIKNSIEWNGLIREIQPASRGTP-FAIRESAGYTLK 247 (516)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~---~~~~y~~~~~g~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 247 (516)
+...+++++.++++...+. ...+|..+..++++.+++|+. .+++++++.+.+.++........ .......+...
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 556 (803)
T PRK11067 478 FTVDGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENP- 556 (803)
T ss_pred CcCCCceEEEEEEEEeccccccccccceeeEEEEEEEEEEEecCceEEEEEEEEEEEEeecCCcchhHHHHHHHcCCcc-
Confidence 9888888888877764321 235788889999999999998 67778888877666653211000 00111111100
Q ss_pred ceeEEEEEEecCCCCCCCCCcceeeeeeeeecCCCCcccccccccceeeeceeecccceeeeeccccCCCCCCCCCcccc
Q psy2168 248 SSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQ 327 (516)
Q Consensus 248 ~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~ 327 (516)
..+.. ..+. .....+.+++.+|++|+..+|++|+.++
T Consensus 557 -------~~~~~-------~~~~-----------------------------~~~~~~~~~~~~d~~D~~~~Pt~G~~~~ 593 (803)
T PRK11067 557 -------SSDSD-------NSFK-----------------------------TDDFTFNYGWTYNNLDRGYFPTAGNRVN 593 (803)
T ss_pred -------ccccc-------cccc-----------------------------eEEEEEEEEEEEecCcCCCCCCCCeeEE
Confidence 00000 0000 0012345567777888888888888777
Q ss_pred ceeeeeccCCcceeeeEEEEEEEEEecCC--CcEEEEEeeeeeeecCCCCCccCcccceeeCCCCCccCCCCCCCCcCC-
Q psy2168 328 GSVEFAGLGGDVGFQKYSSLFQVNYPLGP--YITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKS- 404 (516)
Q Consensus 328 ~~~~~~~~g~d~~f~k~~~~~~~~~~l~~--~~~l~~~~~~G~i~~~~~~~~lp~~e~f~lGG~~~vRGy~~~~igp~~- 404 (516)
+..+.+.++++.+|.|+.+++++|+|+.+ .+++.+++++|++.+++. +.+|++++|++||.++||||..+++||++
T Consensus 594 ~~~~~~~~gs~~~f~k~~~~~~~y~~l~~~~~~~l~~r~~~G~~~~~~~-~~lP~~erF~lGG~~svRGy~~~siGp~~~ 672 (803)
T PRK11067 594 LTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGLGG-KEMPFYENFYAGGSSTVRGFQSNTIGPKAV 672 (803)
T ss_pred EEEEEEeecccceEEEEEEEEEEEEEecCCCcEEEEEEEEeeeeecCCC-CCCChhheeccCCCCcCCcccCCCcCCccc
Confidence 77666667889999999999999999985 477888999998877654 56999999999999999999999999984
Q ss_pred -------------------CCCCCcceeEEEeeEEEEeeCCCCCCCCCCCCCCceEEEEEecccccccCchhhh------
Q psy2168 405 -------------------GGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEIT------ 459 (516)
Q Consensus 405 -------------------~~~~~gG~~~~~~~~El~~~l~~~~~~~~~~~~~l~~~~F~D~G~~~~~~~~~~~------ 459 (516)
.++.+||+.++.+++|+++|+|+ .... ....|++++|+|+|++|+...+...
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~iGG~~~~~~s~E~~~p~~~-~~~~--~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~ 749 (803)
T PRK11067 673 YYPGQASNYTQDGAKDLCKSDDAVGGNAMAVASLELITPTPF-ISDK--YANSVRTSFFWDMGTVWDTNWDNTAYTRAAG 749 (803)
T ss_pred cccccccccccccccccCCCCCCCCCeEEEEEeEEEEEeCCc-cccc--cCCCEEEEEEEEeeecccCCccccccccccc
Confidence 24579999999999999999875 1111 1247999999999999986321000
Q ss_pred -hhhhhcccCeeeeeeEEEEEeecceeEEEEEEEeeccccCCCCccccEEEEeeecC
Q psy2168 460 -SKWRKLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 460 -~~~~~~~~~~~~s~G~Gir~~~t~~g~i~l~~a~~l~~~~~d~~~~~~~f~ig~~F 515 (516)
..+ .....++.|+|+|+|| .||+|||+||||+|+++.++|.... |||+||+.|
T Consensus 750 ~~~~-~~~~~~r~s~G~G~r~-~sPiGPirld~a~pl~~~~~d~~~~-~~fsiG~~f 803 (803)
T PRK11067 750 YPDY-SDPSNIRMSAGIALQW-MSPLGPLVFSYAQPFKKYDGDKAEQ-FQFNIGKTW 803 (803)
T ss_pred ccCc-CCCCcEEEEEeEEEEE-eCCCCCeEEEEEEeCCCCCCCceeE-EEEeccccC
Confidence 000 0134699999999999 5999999999999999887777655 999999987
No 3
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=100.00 E-value=3.7e-46 Score=417.06 Aligned_cols=417 Identities=25% Similarity=0.375 Sum_probs=332.2
Q ss_pred ccccccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCC
Q psy2168 24 AMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDAT 103 (516)
Q Consensus 24 ~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~ 103 (516)
..+...++++++|++|.|+|+.++++++|++++++.+ |++++. .++++++++|+++++|++|.+.+.+. ..
T Consensus 312 v~~~v~eg~~~~i~~i~i~g~~~t~~~~i~~~~~~~~---G~~~~~--~~l~~~~~~L~~lg~f~~v~~~~~~~----~~ 382 (741)
T TIGR03303 312 LTFKVDPGKRVYVRRINISGNTRTRDEVIRRELRQLE---GDWYSL--SKIKRSKRRLERLGYFETVNIETVPV----GS 382 (741)
T ss_pred EEEEEccCCeEEEEEEEEECCCccccceeehhhccCc---ccccCH--HHHHHHHHHHHhCCCCceeeeeecCC----CC
Confidence 5677889999999999999999999999999999655 998864 33457999999999999999987643 34
Q ss_pred CCCcEEEEEEEEecceeeEEEEEeecCcce-EEEEEEeeeccCCCceEEEEEEEeeEEeEEEEEEEeccccCCCCceEEE
Q psy2168 104 PEHGYEITFRVKELKRYRAGVTTSIGNNEG-SVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTLRKPFFGPIDSMLSG 182 (516)
Q Consensus 104 ~~~~v~l~i~v~E~~~~~~~~~~~~g~~~g-~~~l~~~~~Nl~G~g~~l~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 182 (516)
+ +.++|++.|+|+++..+.++++|++.++ .+.+.++++|+||.|+++++.+.++...+.+.++|..|++...++.+.+
T Consensus 383 ~-~~~~v~i~v~e~~~~~~~~~~g~~~~~~~~~~~~~~~~Nl~G~g~~l~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 461 (741)
T TIGR03303 383 P-DQVDLNVKVKEQPTGSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGF 461 (741)
T ss_pred C-CEEEEEEEEEEccccEEEEeeeecCCCceEEEEEEEEecccccccEEEEEEEeccceEEEEEEEECCCCcCCCeEEEE
Confidence 5 7899999999988767778888887666 7999999999999999999999999887789999999999888899998
Q ss_pred EEEEeeccc---CcccceeeeeeEEEEEeEeec-CeEEEEEEEEEEEEecCCCCCCh---HHHHHhhCCCccceeEEEEE
Q psy2168 183 SLLRQVNEM---PASSCKLLEQGLILDYAILFP-TIKNSIEWNGLIREIQPASRGTP---FAIRESAGYTLKSSLKFITS 255 (516)
Q Consensus 183 ~~~~~~~~~---~~~~y~~~~~g~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~ 255 (516)
++++...+. ....|...+.++.+.+++++. ++++++++++.+.++........ ..+....+.....++++++.
T Consensus 462 ~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (741)
T TIGR03303 462 SIFYSETDRNYKNFSDYKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKNSSDSDSSASYFIKEQGGKFIDSSLSYGWS 541 (741)
T ss_pred EEEEEEcccccccccCceeEEEEEEEEEEEEecCceEEEEEEEEEEEEEecCCCcchhHHHHHHHhCCceEEEEEEEEEE
Confidence 888765432 235688888899999999988 78888888888777764211111 11111223333455566666
Q ss_pred EecCCCCCCCCCcceeeeeeeeecCCCCcccccccccceeeeceeecccceeeeeccccCCCCCCCCCccccceeeeecc
Q psy2168 256 LDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGL 335 (516)
Q Consensus 256 ~d~~d~~~~p~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~ 335 (516)
||++|+.++|++|+.+++..+ ++++
T Consensus 542 ~d~rD~~~~P~~G~~~~~~~~-------------------------------------------------------~~~~ 566 (741)
T TIGR03303 542 YDTLDSGYFPTKGSIQRLSQE-------------------------------------------------------FAGP 566 (741)
T ss_pred EeCCcCCCCCCCCcEEEEEEE-------------------------------------------------------Eeee
Confidence 666666666666655554444 3345
Q ss_pred CCcceeeeEEEEEEEEEecCC--CcEEEEEeeeeeeecCCCCCccCcccceeeCCCCCccCCCCCCCCcCC---CCCCCc
Q psy2168 336 GGDVGFQKYSSLFQVNYPLGP--YITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKS---GGSSLG 410 (516)
Q Consensus 336 g~d~~f~k~~~~~~~~~~l~~--~~~l~~~~~~G~i~~~~~~~~lp~~e~f~lGG~~~vRGy~~~~igp~~---~~~~~g 410 (516)
+++.+|.|+.+++++|+||.+ ++++++++.+|++.++++ +++|++|+|++||.+++|||..+++||++ ..+.+|
T Consensus 567 g~~~~f~k~~~~~~~y~~l~~~~~~~l~~~~~~g~~~~~~~-~~~p~~e~f~lGG~~svRGy~~~~igp~~~~~~~~~~g 645 (741)
T TIGR03303 567 GGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGG-KDLPFYERFYAGGIGSVRGFESNGIGPRDINDSGDSIG 645 (741)
T ss_pred cCCceEEEEEEEEEEEEEcCCCCcEEEEEEEEeeEEEcCCC-CccChhHeEecCCCCcCCCccCCCcCCCccCCCCCCCC
Confidence 677899999999999999997 599999999999987754 56999999999999999999999999987 356899
Q ss_pred ceeEEEeeEEEEeeCCCCCCCCCCCCCCceEEEEEecccccccCchhhhhhhhhcccCeeeeeeEEEEEeecceeEEEEE
Q psy2168 411 GTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEIN 490 (516)
Q Consensus 411 G~~~~~~~~El~~~l~~~~~~~~~~~~~l~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~s~G~Gir~~~t~~g~i~l~ 490 (516)
|+.++.+++|||+|+++ .|. ...+++++|+|+|++|+...+... .. .....++.|+|+|+||. +|+|||+|+
T Consensus 646 G~~~~~~~~Elr~pl~~-~~~----~~~~~~~~F~D~G~v~~~~~~~~~-~~-~~~~~~~~s~G~Glr~~-tp~gpi~ld 717 (741)
T TIGR03303 646 GNAMATANVELIFPLPF-LPE----DNGLRGSVFFDAGNVWGTDQKKEG-DY-SDDSSLRASVGVGLRWI-SPMGPLRFS 717 (741)
T ss_pred ceEEEEEEEEEEEcCCC-CCc----cCcEEEEEEEEeeecccCCccccc-cc-CCCCcEEEEEEEEEEEE-CCcCcEEEE
Confidence 99999999999999962 121 236999999999999987421000 00 12457899999999996 899999999
Q ss_pred EEeeccccCCCCccccEEEEeeecC
Q psy2168 491 YCFPYSYQRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 491 ~a~~l~~~~~d~~~~~~~f~ig~~F 515 (516)
||+|+...+.|...+ |||+||..|
T Consensus 718 ~a~~l~~~~~d~~~~-~~f~~G~~F 741 (741)
T TIGR03303 718 YAKPLKKKKGDKTQS-FQFSIGTTF 741 (741)
T ss_pred EEEeCCCCCCCceEE-EEEeCcccC
Confidence 999998877776654 999999988
No 4
>KOG2602|consensus
Probab=100.00 E-value=1.8e-48 Score=380.16 Aligned_cols=419 Identities=37% Similarity=0.590 Sum_probs=361.8
Q ss_pred cEEEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCCCCCcEEEEE
Q psy2168 33 PARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYEITF 112 (516)
Q Consensus 33 ~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~~~~~v~l~i 112 (516)
+.+|..|.|.|+.+|++.+|.+++.. +++++.+.|++.+++.+..+|.++++|++|++.+|....++..| ++.+|++
T Consensus 35 ~~~v~~V~v~Gl~~Tkdd~I~k~v~~--~~ka~nl~el~~~s~~a~~nL~~l~iF~~v~~~iD~~~g~~~~p-~~~~Vt~ 111 (457)
T KOG2602|consen 35 ESRVDHVIVSGLERTKDDFIMKEVDL--VFKAKNLQELLLASHEAASNLRALGIFDSVNILIDTKEGSDALP-GGLVVTF 111 (457)
T ss_pred cceeeEEEeccccccchHHHHHHhhh--hhhcchHHHHHHHHHHHHHHHHHhcccccceeeeccccCCCCCC-CceeEEE
Confidence 34899999999999999999999994 66788899999999999999999999999999999866667778 8999999
Q ss_pred EEEecceeeEEEEEeecCcceEEEEEEeeeccCCCceEEEEEEEeeEEe-EEEEEEEeccccCCCCceEEEEEEEeec-c
Q psy2168 113 RVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKS-LVYNLTLRKPFFGPIDSMLSGSLLRQVN-E 190 (516)
Q Consensus 113 ~v~E~~~~~~~~~~~~g~~~g~~~l~~~~~Nl~G~g~~l~~~~~~~~~~-~~~~~~~~~P~~~~~~~~~~~~~~~~~~-~ 190 (516)
.|+|.++..+..+++.++.++.+.+.+..+|++|+|+.+..++.++..+ ..+.+++..|.+.+....+....+++.. .
T Consensus 112 ~v~E~kr~tg~~GT~~gn~~~s~~~~l~~~ni~G~ge~l~~~~sy~~~~~~~~~l~f~~P~~~~~~~~~~~~~~~~~~d~ 191 (457)
T KOG2602|consen 112 LVTEPKRLTGSTGTDVGNREGSVELNLKLPNILGRGENLSGQVSYGCTRSTDMGLSFYKPRFHGLKTPFSSFSIFRTQDW 191 (457)
T ss_pred EeeecchheeeccccccCCCcccchhcccccccCcceeeeeeEEEecccCceeeeEEEecccCCCCcchhhhhhhhhhcc
Confidence 9999998888888888888889999999999999999999999999554 4899999999987654344444444333 3
Q ss_pred cCcccceeeeeeEEEEEeEeec-CeEEEEEEEEEEEEecCCCCCChHHHHHhhCCCccceeEEEEEEecCCCCCCCCCcc
Q psy2168 191 MPASSCKLLEQGLILDYAILFP-TIKNSIEWNGLIREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQ 269 (516)
Q Consensus 191 ~~~~~y~~~~~g~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~d~~~~p~~G~ 269 (516)
+++++++....|+++.|.++.- .+.|.+.|+..|+++...++..+..++.++|+.+++++.+++.+|+||..+.|++|+
T Consensus 192 ~~~ss~d~~~~g~sL~l~~~~~~~l~H~l~~~~~WR~l~~~sq~as~svR~qaG~~L~s~L~~tfv~D~Rd~~~~ptrG~ 271 (457)
T KOG2602|consen 192 MKWSSLDETHRGASLELSAEDWFLLFHELKYEIAWRNLGDLSQGASFSVRRQAGHSLKSSLSYTFVFDKRDSSIIPTRGI 271 (457)
T ss_pred cccccccccccceEEEEecchhhhhhHHHHHHHHHHhhccccccccHHHHHHhhHHHHHhhcceEEEeccCCcccccccc
Confidence 5778899888899998888754 457899999999999888888899999999999999999999999999999999999
Q ss_pred eeeeeeeeecCCCCcccccccccceeeeceeecccceeeeeccccCCCCCCCCCccccceeeeeccCCcceeeeEEEEEE
Q psy2168 270 FCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQ 349 (516)
Q Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~g~d~~f~k~~~~~~ 349 (516)
++++..|++|++ ++..|.|.++..+
T Consensus 272 ~~k~~~e~~g~~-------------------------------------------------------~~~sf~k~e~~lq 296 (457)
T KOG2602|consen 272 LLKSTSELAGLF-------------------------------------------------------GDVSFLKSELDLQ 296 (457)
T ss_pred eeEeehhhcCcc-------------------------------------------------------cchhhhhhhhhhe
Confidence 999998888753 4466777888889
Q ss_pred EEEecCCCcEEEEEeeeeeeecCCCCCccCcccceeeCCCCCccCCCCCCCCcCCCCCCCcceeEEEeeEEEEeeCCCCC
Q psy2168 350 VNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTK 429 (516)
Q Consensus 350 ~~~~l~~~~~l~~~~~~G~i~~~~~~~~lp~~e~f~lGG~~~vRGy~~~~igp~~~~~~~gG~~~~~~~~El~~~l~~~~ 429 (516)
...||.-..++.++++.|.+.++++ ..++.+||||+||+.++|||..++|||++..+.+||+.++.+.+.|..|+|+ .
T Consensus 297 ~avpl~~~~~~s~~~~~G~l~~~~~-~~v~I~dRFylGGps~lRGFk~~giGP~~~~~~lGG~a~~a~~~~L~~~lP~-~ 374 (457)
T KOG2602|consen 297 KAVPLGFDATLSFSFSGGVLKPLGS-RPVSIADRFYLGGPSDLRGFKTRGIGPKDEGDFLGGDAFVAAGAHLYFPLPF-A 374 (457)
T ss_pred eccccccceeeEeeEeeeeeecCCC-CccchhhhhccCCcccccccccCCcCCCCCCcccCCceeeEeeeEecccCCc-c
Confidence 9999987789999999999999976 7789999999999999999999999999999999999999999999999997 4
Q ss_pred CCCCCCCCCceEEEEEecccccccCchhhhhhhhhcccCeeeeeeEEEEEeecc-eeEEEEEEEeeccccCCCCccccEE
Q psy2168 430 PTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAG-LARVEINYCFPYSYQRDDSVVPGMQ 508 (516)
Q Consensus 430 ~~~~~~~~~l~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~s~G~Gir~~~t~-~g~i~l~~a~~l~~~~~d~~~~~~~ 508 (516)
+. ....+++++|+++|++-+......++.........++|+|+|+.+. +| ..+++|+|..|+.++..|....|||
T Consensus 375 ~~---~~~~fr~h~F~naG~l~~l~s~~~~~~~~kl~e~~r~S~G~Glv~~-~~~~aR~ELNy~~pl~~~e~D~~~~Gfq 450 (457)
T KOG2602|consen 375 KG---FKSGFRGHVFANAGNLANLSSEAPKNTIPKLLETFRTSVGAGLVVP-TPRAARLELNYCLPLKKQENDRIRKGFQ 450 (457)
T ss_pred cc---cccceeeEEEeccccccccCcccccchhhhhhhhhccccccceEEe-cchhhceeeeeEEEeeeeccchhhcceE
Confidence 43 2246999999999999987642222222234567899999999996 67 9999999999999999999988999
Q ss_pred EEeeecC
Q psy2168 509 FGFGITF 515 (516)
Q Consensus 509 f~ig~~F 515 (516)
|++|..|
T Consensus 451 fG~g~~F 457 (457)
T KOG2602|consen 451 FGAGIDF 457 (457)
T ss_pred ecccccC
Confidence 9999987
No 5
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=100.00 E-value=1.1e-42 Score=379.81 Aligned_cols=411 Identities=15% Similarity=0.131 Sum_probs=288.8
Q ss_pred CcccccccccCCc--cEEEEEEEEECCC---ccchHHHHhhcc--cccccccccHHHHHHHHHHHHHhhhcCCcceeeEE
Q psy2168 20 DPNDAMLGHVMVA--PARVDRVKVEGIG---RTYDDIITDSIK--QTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQI 92 (516)
Q Consensus 20 ~~~~~~~~~~~~~--~~~i~~I~v~G~~---~t~~~vI~r~l~--~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i 92 (516)
+++...+.+.+|. +++|+.|.++|+. +|++.+|+|+++ +++ |++++. .++++.+++|+++++|++|++
T Consensus 253 ~~~~V~l~V~EG~i~~I~V~~i~~~Gn~~~G~T~~~vI~Rel~~~lk~---G~~fn~--~~Le~~~~rL~~lg~F~~V~V 327 (718)
T TIGR00992 253 NTDEVVCEVVEGDITNLQIQFFDKLGNVVEGNTRDPVVTRELPKQLKP---GDVFNI--EAGKTALQNINSLGLFSNIEV 327 (718)
T ss_pred CCCEEEEEEeccceeEEEEEEecccCccccCccchHHHHHHHHhccCC---CCcCCH--HHHHHHHHHHHcCCCccccee
Confidence 3336677778777 5666656566776 789999999998 655 888874 334679999999999999999
Q ss_pred EEecCCCCCCCCCCcEEEEEEEEeccee--------eEEEEEe---ecCcce-EEEEEEeeeccCCCceEEEEEEEee--
Q psy2168 93 EIDASKGPDATPEHGYEITFRVKELKRY--------RAGVTTS---IGNNEG-SVVVWGKMPNLYGRGELAEMSYVYG-- 158 (516)
Q Consensus 93 ~~~~~~~~~~~~~~~v~l~i~v~E~~~~--------~~~~~~~---~g~~~g-~~~l~~~~~Nl~G~g~~l~~~~~~~-- 158 (516)
.+.|. ...+ +.++|.|.|+|+++. ++.++.+ +++..| .+.++|+++||||+|++++++++.+
T Consensus 328 ~~~p~---~~~~-g~v~V~V~V~E~~~~s~~~~~~~s~~~G~Gg~~~ss~~G~~g~i~~~~rNl~G~g~~l~~~~~~s~~ 403 (718)
T TIGR00992 328 NPRPD---EMNE-GEIIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLASSQPGGTITFEHRNLQGLNRSLGGSVTTSNF 403 (718)
T ss_pred eccCC---CCCC-CeEEEEEEEEECCCCceeeeccccccccCCCcccccccceeEEeeEEeccCcccCcEEEEEEEeccc
Confidence 86542 1256 889999999998865 4444444 555566 7899999999999999999999998
Q ss_pred ---EEeEEEEEEEeccccCCC----CceEEEEEEEeeccc----------CcccceeeeeeEEEEEeEeec-CeEEEEEE
Q psy2168 159 ---TKSLVYNLTLRKPFFGPI----DSMLSGSLLRQVNEM----------PASSCKLLEQGLILDYAILFP-TIKNSIEW 220 (516)
Q Consensus 159 ---~~~~~~~~~~~~P~~~~~----~~~~~~~~~~~~~~~----------~~~~y~~~~~g~~~~l~~~~~-~~~~~l~~ 220 (516)
...+.++++|..||+.+. +.++.+++++++... ...+|...+.++.+.+++|+. +++...+|
T Consensus 404 ~~~~~~~~~~lsy~~P~i~~~~~p~~~s~~~~~f~~~~~~~~~~~~~~~~~~~~y~~~r~G~~~~~~r~l~~~~~~~~~~ 483 (718)
T TIGR00992 404 LNPQDDLLFKVEYTHPYLDGVDNPRNRTYTASCFNSRKLSPVFTGGPGVNEVPSIWVDRAGVKANITENFARQSKFTYGL 483 (718)
T ss_pred cCCCcceEEEEEEecCccCCCCCCccceEEEEEEEeccccccccCCcccccCCCceEEEEEEEEEEeeccCcccccccCe
Confidence 666789999999998776 678888887765321 124588889999999999987 44333333
Q ss_pred EEE----EEEecCCCCCChHHHHHhhCCCccceeEEEEEEecCCCCCCCCCcceeeeeeeeecCCCCcccccccccceee
Q psy2168 221 NGL----IREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVV 296 (516)
Q Consensus 221 ~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 296 (516)
... +......+. .|.....+. . .+... .|. .+...+.
T Consensus 484 ~~~~~~~~~~~~~~~~---------~g~~~~~~~--~--~~~~g---~~~---------t~s~~~~-------------- 524 (718)
T TIGR00992 484 VMEEIFTRDESRHINA---------NGQRSLPSG--P--ISADG---PPT---------TLSGTGV-------------- 524 (718)
T ss_pred EEEEEeeeeeeeeccc---------cCccccccc--c--ccccC---Ccc---------eecCCCc--------------
Confidence 221 111111000 000000000 0 00000 000 0000000
Q ss_pred eceeecccceeeeeccccCCCCCCCCCccccceeeeec-cCCcc-eeeeEEEEEEEEEecCC---------CcEEEEEee
Q psy2168 297 HRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGDV-GFQKYSSLFQVNYPLGP---------YITAQASLD 365 (516)
Q Consensus 297 ~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~-~g~d~-~f~k~~~~~~~~~~l~~---------~~~l~~~~~ 365 (516)
.....+.++++||++|+.++||+|+.+.++.+.+. ++++. .|.|+.+++++|+||.+ .++|+++++
T Consensus 525 ---~~l~~l~~~~t~D~rDn~l~Pt~G~~~~~~~e~~~~~g~~~~~f~r~~~~~~~y~pl~~~~~~~~~~~~~vla~r~~ 601 (718)
T TIGR00992 525 ---DRMAFLQANITRDNTNFVNGPTVGSRVRFQVDQGLGVGSGFPFFNRHQLTYTKFIQLNWVELGAGKSPPPVLVLHGH 601 (718)
T ss_pred ---cceEEEEEEEEEecCCCCCCCCcccEEEEEEEeccCcCCCCceEEEEEEEEEEEEeccccccccccCCCcEEEEEEE
Confidence 00123455666777777777777777777666654 56666 69999999999999963 379999999
Q ss_pred eeeeecCCCCCccCcccceeeCCCCCccCCCCCCCCcCCCCCCCcceeEEEeeEEEEeeCCCCCCCCCCCCCCceEEEEE
Q psy2168 366 AGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFA 445 (516)
Q Consensus 366 ~G~i~~~~~~~~lp~~e~f~lGG~~~vRGy~~~~igp~~~~~~~gG~~~~~~~~El~~~l~~~~~~~~~~~~~l~~~~F~ 445 (516)
+|++.+ .+|++++|++||.++||||.++++|| |+.++.+++|||+|+.. .+ +++|+
T Consensus 602 ~G~~~g-----dlP~~e~F~lGG~~SVRGY~~~~lGp--------Gr~~~~~s~E~r~Pi~~----------~~-g~~F~ 657 (718)
T TIGR00992 602 YGGCVG-----DLPSYDAFILGGPYSVRGYNMGELGA--------ARNIFEATAEIRIPIKA----------TH-VYAFV 657 (718)
T ss_pred eeeEcC-----CCCchhceecCCCCcccCccCCcccc--------cceeeEEEEEEEEEecC----------cc-EEEEE
Confidence 998752 49999999999999999999999886 89999999999999852 46 99999
Q ss_pred ecccccccCchhhhh-hhhhcccCeeeeeeEEEEEeecceeEEEEEEEeeccccCCCCccccEEEEeeecC
Q psy2168 446 NAGSIQDMSASEITS-KWRKLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 446 D~G~~~~~~~~~~~~-~~~~~~~~~~~s~G~Gir~~~t~~g~i~l~~a~~l~~~~~d~~~~~~~f~ig~~F 515 (516)
|+|++|+...+...+ .+......++.|+|+|+||. ||+|||||||. +... +|||+||..|
T Consensus 658 D~G~~~~s~~~~~g~~~~~~~~~~~~~s~GvGvR~~-sPiGPiRlD~~--------~~~~-rf~F~iG~~F 718 (718)
T TIGR00992 658 EHGSDLGSSKDVKGNPTIVYRRPGQGSSYGAGVKLG-LVRAEYAVDHN--------EGTG-AIFFRFGERF 718 (718)
T ss_pred ecccccCcccccCCCccccccCCCCccceeEEEEEe-cCcccEEEEec--------CCCc-EEEEeccccC
Confidence 999999764321000 00011245689999999994 99999999991 1122 4999999988
No 6
>PLN03138 Protein TOC75; Provisional
Probab=100.00 E-value=4e-38 Score=334.89 Aligned_cols=415 Identities=18% Similarity=0.184 Sum_probs=285.9
Q ss_pred CCcccccccccCCccEEEE-----EE--EEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeE
Q psy2168 19 SDPNDAMLGHVMVAPARVD-----RV--KVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQ 91 (516)
Q Consensus 19 ~~~~~~~~~~~~~~~~~i~-----~I--~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~ 91 (516)
.|+-+..+.+.++...+|+ +| .|+|++ +|.||+|+|++ .+.+|++|+. .++++++++|+++++|++|+
T Consensus 330 id~g~Vtl~V~EG~i~~I~V~~~drig~~i~GNT--rD~VIRREL~~-~lkeGd~fN~--~~l~~slqRL~~LGlFedV~ 404 (796)
T PLN03138 330 LNTNEVVCEVVEGDITKVVIQFQDKLGNVVEGNT--QLPIIDRELPK-QLRQGHIFNI--EAGKQALRNINSLALFSNIE 404 (796)
T ss_pred cCCceEEEEEecccEEEEEEEecccccccccCCc--cCeEEeeeccc-ccCCCcccCH--HHHHHHHHHHHhCCCCceeE
Confidence 3446667777788777776 65 567775 89999999973 1234999974 33468999999999999999
Q ss_pred EEEecCCCCCCCCCCcEEEEEEEEecceeeEEEEEeec-----------Ccce-EEEEEEeeeccCCCceEEEEEEEee-
Q psy2168 92 IEIDASKGPDATPEHGYEITFRVKELKRYRAGVTTSIG-----------NNEG-SVVVWGKMPNLYGRGELAEMSYVYG- 158 (516)
Q Consensus 92 i~~~~~~~~~~~~~~~v~l~i~v~E~~~~~~~~~~~~g-----------~~~g-~~~l~~~~~Nl~G~g~~l~~~~~~~- 158 (516)
+.+.|. ...+ +.++|+|.|+|..+.++.++++++ .+.+ .+.++|++.||+|+|+++.++++.+
T Consensus 405 V~~~Pg---~~~p-~~VdL~V~VkE~e~~t~~ls~g~g~~~G~g~~Psl~S~g~~Gtvs~~~~NL~G~g~~L~~~v~~s~ 480 (796)
T PLN03138 405 VNPRPD---EKNE-GGIVVEIKLKELEPKSAEVSTEWSIVPGRGGRPTLASIQPGGTVSFEHRNIQGLNRSILGSVTSSN 480 (796)
T ss_pred EEeccC---CCCC-CeEEEEEEEEEccCCceeEecccccccccCCCCccccccceeEEEEeccccccccceEEEEEEeec
Confidence 996542 1246 899999999996655666666644 1223 5789999999999999999999985
Q ss_pred ----EEeEEEEEEEeccccCC--CC--ceEEEEEEEeecccC-------cc---cceeeeeeEEEEEeEeec-CeEEEEE
Q psy2168 159 ----TKSLVYNLTLRKPFFGP--ID--SMLSGSLLRQVNEMP-------AS---SCKLLEQGLILDYAILFP-TIKNSIE 219 (516)
Q Consensus 159 ----~~~~~~~~~~~~P~~~~--~~--~~~~~~~~~~~~~~~-------~~---~y~~~~~g~~~~l~~~~~-~~~~~l~ 219 (516)
.....++++|+.||+.+ .+ .++.+++|.++.... .. .......|+.+.+++|+. ..+.+++
T Consensus 481 ~~~g~~d~~f~lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~~~~~~~~~~~~R~G~~~~~~rp~~~~~~~s~g 560 (796)
T PLN03138 481 LLNPQDDLSFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPPIWVDRAGFKANITENFTRQSKFTYG 560 (796)
T ss_pred ccCCccceEEEEEeecccccCCCCcccccEEEEEEecCcCCceeeCCCCcccCCcceEeecccceEeecccCCCCceEEE
Confidence 34458999999999966 33 678888888653111 11 223677888899999987 3333444
Q ss_pred EEEEEEEecCCCCCChHHHHHhhCCCccceeEEEEEEecCCCCCCCCCcceee-eeeeeecCCCCcccccccccceeeec
Q psy2168 220 WNGLIREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQ-GSVEFAGLGGDVGFQKYSSLHRVVHR 298 (516)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~d~~~~p~~G~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~ 298 (516)
+.+ .++...+....... .+ ..+.|..+.... -...+.+.|.|.-
T Consensus 561 ~~~--q~v~~~d~~g~~~~---~~-----------------~~~~~~~~~~~~g~plT~S~~g~D~l------------- 605 (796)
T PLN03138 561 LVV--EEITTRDETSHICT---HG-----------------QRVLPSGGLSADGPPTTLSGTGIDRM------------- 605 (796)
T ss_pred EEE--EEEEeecCCCCccc---cc-----------------cccccccccccCCCceeeccCCcchh-------------
Confidence 443 34433322111000 00 000111000000 0011222222211
Q ss_pred eeecccceeeeeccccCCCCCCCCCccccceeeeec-cCCc-ceeeeEEEEEEEEEecC---------CCcEEEEEeeee
Q psy2168 299 YTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGD-VGFQKYSSLFQVNYPLG---------PYITAQASLDAG 367 (516)
Q Consensus 299 ~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~-~g~d-~~f~k~~~~~~~~~~l~---------~~~~l~~~~~~G 367 (516)
..+.+.+++|++|+...||.|....+..+.+. .+++ ..|.|+.+++++|+|+. ...+|++++++|
T Consensus 606 ----~~~~~~~trd~~~~~~~pt~G~~~~~~~EQ~lpvg~~~~~fNR~~~~~s~fipv~~~~~~~~~~~Pq~la~~~~aG 681 (796)
T PLN03138 606 ----AFLQANITRDNTKFVNGAVVGDRHIFQVDQGLGIGSKFPFFNRHQLTVTKFIQLNKVEKGAGKPPPPVLVLHGHYG 681 (796)
T ss_pred ----hheeeeeEeccCCCCCCCCccceEEEEeeeeccccCCCCceEEEEEEEEEEEeeccccccccCCCCcEEEEEEecc
Confidence 13455678888888888888888888888765 3444 55799999999999982 136899999999
Q ss_pred eeecCCCCCccCcccceeeCCCCCccCCCCCCCCcCCCCCCCcceeEEEeeEEEEeeCCCCCCCCCCCCCCceEEEEEec
Q psy2168 368 LLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANA 447 (516)
Q Consensus 368 ~i~~~~~~~~lp~~e~f~lGG~~~vRGy~~~~igp~~~~~~~gG~~~~~~~~El~~~l~~~~~~~~~~~~~l~~~~F~D~ 447 (516)
.+.+ ++|++|.|.|||.++||||.+..+| .|+.++.+++|||+|+. ++.+++|+|+
T Consensus 682 ~~~G-----dLPpYEAF~LGG~nSVRGY~eG~lg--------~gRs~l~asaEyRfPi~-----------~~~g~~F~D~ 737 (796)
T PLN03138 682 GCVG-----DLPSYDAFTLGGPYSVRGYNMGELG--------AARNILEVAAELRIPVR-----------NTHVYAFAEH 737 (796)
T ss_pred ceec-----CCCcHHhcccCCCCcccCcccCccc--------ccceeEEEEEEEEeeec-----------cceEEEEEEe
Confidence 8763 5999999999999999999998775 58999999999999993 3688999999
Q ss_pred ccccccCchhhhhhhh-hcccCeeeeeeEEEEEeecceeEEEEEEEeeccccCCCCccccEEEEeeecC
Q psy2168 448 GSIQDMSASEITSKWR-KLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 448 G~~~~~~~~~~~~~~~-~~~~~~~~s~G~Gir~~~t~~g~i~l~~a~~l~~~~~d~~~~~~~f~ig~~F 515 (516)
|+.|....+...+... ......-.|||+|+| +||||++||+. .+....+|||+||..|
T Consensus 738 GsdLgS~~~V~G~P~~~r~kpG~G~syG~Gvr-----lGpiR~dYa~~-----~~~G~~r~hfg~GerF 796 (796)
T PLN03138 738 GTDLGSSKDVKGNPTEFFRRAGHGSSYGVGVK-----LGLVRAEYAVD-----HNAGTGAIFFRFGERF 796 (796)
T ss_pred ccccCCCCCCCCCchhhccCCCCCcccceeeE-----ecceeEEEeec-----CCCCCceEEEeccccC
Confidence 9999775432111110 012245689999998 69999999985 1122334999999887
No 7
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-37 Score=328.76 Aligned_cols=401 Identities=18% Similarity=0.203 Sum_probs=290.1
Q ss_pred CCCCCccccccc--ccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEE
Q psy2168 16 ELDSDPNDAMLG--HVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIE 93 (516)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~ 93 (516)
.+|++.+.+.++ .++|+++.++.|+|+|.++++++.|++.+++.. |.++.. +.+++.+++|.++++|++|.|+
T Consensus 180 ~v~~~~~~a~~~~~~dsG~~y~~g~v~~~g~~r~~~~~~~~~~~~~~---G~~Y~~--~~l~~~~~rl~~~~~F~sv~v~ 254 (594)
T COG0729 180 VVDPATHTADVDLNYDSGRRYRFGPVTVEGSQRIDEEYLQNLVPFKY---GLPYDP--EDLAELNQRLRQTGYFSSVVVQ 254 (594)
T ss_pred ccccccceEEEEEeecccceEEeCcEEEccceecCHHHHhhccccCC---CCcCCH--HHHHHHHHHHhhcCceeeEEEe
Confidence 345555655554 458899999999999999999999999999655 888852 2335799999999999999998
Q ss_pred EecCCCCCCCCCCcEEEEEEEEecceeeEEEEEeecCcce-EEEEEEeeeccCCCceEEEEEEEeeEEeEEEEEEEeccc
Q psy2168 94 IDASKGPDATPEHGYEITFRVKELKRYRAGVTTSIGNNEG-SVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTLRKPF 172 (516)
Q Consensus 94 ~~~~~~~~~~~~~~v~l~i~v~E~~~~~~~~~~~~g~~~g-~~~l~~~~~Nl~G~g~~l~~~~~~~~~~~~~~~~~~~P~ 172 (516)
....+ ...+ +.+.|.|.|.|++...+.++++|+++.| .+.+.|.++|+|++++++..+..++...+.....|..|+
T Consensus 255 ~~~~~--~~~~-~~~pv~v~~~~rk~~~~~lG~gyst~~G~~~~~~w~~~~~~~~~~~l~~~~~is~~~~~~~~~y~~p~ 331 (594)
T COG0729 255 PADKQ--AGPD-GLLPVKVSVSERKENTFELGVGYSTDVGAGLEAGWEKRNLFGRGHSLRIESEISAPLQTLEATYKAPL 331 (594)
T ss_pred cCccc--cCcC-ceeceEEEecccccceEEeeeEEeccccccceEEeeeecccCcceeEeeeeeeccchhcCceEEEeec
Confidence 65431 1222 4578999999999889999999999999 899999999999999999999999988777899999999
Q ss_pred cCCC-CceEEEEEEEeecccCcccceeeeeeEE--EEEeEee--c-CeEEEEEEEEEEEEecCCCCCChHHHHHhhCCCc
Q psy2168 173 FGPI-DSMLSGSLLRQVNEMPASSCKLLEQGLI--LDYAILF--P-TIKNSIEWNGLIREIQPASRGTPFAIRESAGYTL 246 (516)
Q Consensus 173 ~~~~-~~~~~~~~~~~~~~~~~~~y~~~~~g~~--~~l~~~~--~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 246 (516)
+... ........+++..+ .+..+....+ ++..+.+ . .+...++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------- 381 (594)
T COG0729 332 LFNPLGQYNPVSAGFDRLD----LYDTESDAYTESLSASRGWDASLGWQRSLAL-------------------------- 381 (594)
T ss_pred ccCCccceeccccccccch----hhccccccccceeeeeehhccccCceeEEEE--------------------------
Confidence 8764 33333333333211 1111111111 2222211 1 11222222
Q ss_pred cceeEEEEEEec--CCCCCCCCCcceeeeeeeeecCCCCcccccccccceeeeceeecccceeeeeccccCCCCCCCCCc
Q psy2168 247 KSSLKFITSLDK--RDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQ 324 (516)
Q Consensus 247 ~~~~~~~~~~d~--~d~~~~p~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~ 324 (516)
.|.++. .+....++ ..++-++.+++.+|+ |+..+|++|.
T Consensus 382 ------r~~~~~~~~~~~~~~~--------------------------------~~~~~g~~~~~~~~~-dd~~~Pt~G~ 422 (594)
T COG0729 382 ------RFSYDNFRQGDISGKT--------------------------------SLLTPGVEFSYTRDT-DDGLFPTWGD 422 (594)
T ss_pred ------EEEccccccccccCCc--------------------------------eEEecceEEEEEEcc-CCCCCCCccc
Confidence 222222 11111111 012234445556666 7777777777
Q ss_pred cccceeeeec--cCCcceeeeEEEEEEEEEecCCCcEEEEEeeeeeeecCCCCCccCcccceeeCCCCCccCCCCCCCCc
Q psy2168 325 FCQGSVEFAG--LGGDVGFQKYSSLFQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGP 402 (516)
Q Consensus 325 ~~~~~~~~~~--~g~d~~f~k~~~~~~~~~~l~~~~~l~~~~~~G~i~~~~~~~~lp~~e~f~lGG~~~vRGy~~~~igp 402 (516)
.+......+- ++++..+........++......+.+..++++|++..-+. ..+|++.||++||..+||||.+++|||
T Consensus 423 ~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~R~~~G~il~~~~-~~vPps~rFfaGG~~svRGY~y~sI~p 501 (594)
T COG0729 423 RLDLTIGPSYEALGSDVDFRLVQARSGYLRTGGADHRLAGRGELGAILTGDL-DDVPPSLRFFAGGDRSVRGYGYQSIGP 501 (594)
T ss_pred eeeeeeeeccccccCchHHhhhhccceeeecCccceEEEEecccceEeeCcc-ccCCccceeecCCCcceeccccccccC
Confidence 7777665533 6677744444444444444445666888899999977332 579999999999999999999999999
Q ss_pred CC-CCCCCcceeEEEeeEEEEeeCCCCCCCCCCCCCCceEEEEEecccccccCchhhhhhhhhcccCeeeeeeEEEEEee
Q psy2168 403 KS-GGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRF 481 (516)
Q Consensus 403 ~~-~~~~~gG~~~~~~~~El~~~l~~~~~~~~~~~~~l~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~s~G~Gir~~~ 481 (516)
++ ++..+||..++..++|++|++. + +|++++|+|+|.+|++... ..++++.++|+|+||+
T Consensus 502 ~~~~g~~~Gg~~l~~~s~Ey~~~~t---~-------~~~~a~FvD~G~a~n~~~~--------~~~d~k~G~Gigvr~~- 562 (594)
T COG0729 502 QDANGDLLGGRSLVTGSLEYQYLVT---D-------PWGLAVFVDAGSAGNNFTR--------LFSDLKKGAGIGVRWD- 562 (594)
T ss_pred cCCCCCcccceEEEEeeEEEEEecc---C-------cEEEEEEEEccccccCCch--------hhhhhhccceeeEeec-
Confidence 97 5789999999999999999995 2 6999999999999998642 3466999999999996
Q ss_pred cceeEEEEEEEeeccccCCCCccccEEEEeeecC
Q psy2168 482 AGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 482 t~~g~i~l~~a~~l~~~~~d~~~~~~~f~ig~~F 515 (516)
||+|||++|+|+|++..+ + ...+||++||+.|
T Consensus 563 SPvGPIr~DiA~pl~~~~-~-~~~~~Yi~iG~~f 594 (594)
T COG0729 563 SPVGPIRFDIAVPLEDKD-D-KKFQFYIGIGQEF 594 (594)
T ss_pred CCcCCeEEEeeccccccC-C-CCeeEEEEecccC
Confidence 999999999999998765 3 3345999999987
No 8
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []. D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane
Probab=100.00 E-value=8.3e-34 Score=285.65 Aligned_cols=311 Identities=28% Similarity=0.430 Sum_probs=236.9
Q ss_pred ccCCCceEEEEEEEeeEEeEEEEEEEeccccCCCCceEEEEEEEeecc-cCcccceeeeeeEEEEEeEeec-CeEEEEEE
Q psy2168 143 NLYGRGELAEMSYVYGTKSLVYNLTLRKPFFGPIDSMLSGSLLRQVNE-MPASSCKLLEQGLILDYAILFP-TIKNSIEW 220 (516)
Q Consensus 143 Nl~G~g~~l~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~g~~~~l~~~~~-~~~~~l~~ 220 (516)
|++|+|+++.+.+.++...+.+.++|..|++...++.+.++++++..+ .....|..+..++++.+++++. .+++.+++
T Consensus 1 N~~G~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 80 (323)
T PF01103_consen 1 NLFGTGQSLSVSATYGSDSQSLSLSYTNPYFFGDRLSLGFSLYYSSSDSDEFSSYDEQTFGFSLSLGYRISPNWSLSLGY 80 (323)
T ss_pred CCCCCCeEEEEEEEEcCceEEEEEEEEEcCCCCCCEEEEEEEEEEEccccccccceeeeccccccceeEcccceEEEEEE
Confidence 899999999999999887789999999999988899999999886422 2235788888899999999987 67888888
Q ss_pred EEEEEEecCCCCCChHHH----HHhhCCCccceeEEEEEEecCCCCCCCCCcceeeeeeeeecCCCCcccccccccceee
Q psy2168 221 NGLIREIQPASRGTPFAI----RESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVV 296 (516)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 296 (516)
.+.+.++........... ....+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 111 (323)
T PF01103_consen 81 SYSRNDFSTSSGSPFSDSVSSSDLQDGKSNI------------------------------------------------- 111 (323)
T ss_pred EEEEEEEEcCCCcccccccccccccCCceEE-------------------------------------------------
Confidence 877777654221110000 001111222
Q ss_pred eceeecccceeeeeccccCCCCCCCCCccccceeeeec--cCCcceeeeEEEEEEEEEecCC--CcEEEEEeeeeeeecC
Q psy2168 297 HRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG--LGGDVGFQKYSSLFQVNYPLGP--YITAQASLDAGLLGSF 372 (516)
Q Consensus 297 ~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~--~g~d~~f~k~~~~~~~~~~l~~--~~~l~~~~~~G~i~~~ 372 (516)
..+++.+.||++|+..+|++|+.+++..+.+. ++++.+|.|+++++++|++|.+ ++++++++.+|++.++
T Consensus 112 ------~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~~~~~~~~f~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 185 (323)
T PF01103_consen 112 ------SSLGLSLSYDTRDNSFFPTKGWYLSFSLEFSGKFLGSDSNFYKFELSARYYYPLGNNHKFVLALRLQGGYIFGY 185 (323)
T ss_pred ------EEEEEEEEEecCCCccCCccceEEEEEEEEecccCCCcceEEEEEEEEEEEEECccCCceEEEEeeeeeEeeec
Confidence 34445556666666666666666666665554 6788899999999999999984 6899999999998876
Q ss_pred CCCCccCcccceeeCCCCCccCCCCCCCCcCCC-CCCCcceeEEEeeEEEEeeCCCCCCCCCCCCCCceEEEEEeccccc
Q psy2168 373 SQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSG-GSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQ 451 (516)
Q Consensus 373 ~~~~~lp~~e~f~lGG~~~vRGy~~~~igp~~~-~~~~gG~~~~~~~~El~~~l~~~~~~~~~~~~~l~~~~F~D~G~~~ 451 (516)
+..+++|..|+|++||.++||||..++++|++. ...+||+.++.+++|+|+|++. .+ ....+++++|+|+|++|
T Consensus 186 ~~~~~lp~~~~f~lGG~~svRGy~~~~~~~~~~~~~~~gG~~~~~~~~E~r~~l~~-~~----~~~~~~~~~F~D~G~v~ 260 (323)
T PF01103_consen 186 SNSDNLPFSERFYLGGPNSVRGYRYRSIGPRDGDGDSLGGDYYFTASAEYRFPLPK-IP----GSPNLYLVAFADAGNVW 260 (323)
T ss_pred ccccccchhhhhccCCCCccccccCCccccccccCcccCceEEEEEeeeeEeeccc-cc----cCCcEEEEEEEcccccc
Confidence 542459999999999999999999999999763 5678999999999999999975 22 02259999999999999
Q ss_pred ccCchhhhhhh-hhcccCeeeeeeEEEEEeecceeEEEEEEEeeccccCCCCccccEEEEeeecC
Q psy2168 452 DMSASEITSKW-RKLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 452 ~~~~~~~~~~~-~~~~~~~~~s~G~Gir~~~t~~g~i~l~~a~~l~~~~~d~~~~~~~f~ig~~F 515 (516)
+...+.....- ......++.|+|+|+||. +|+|||++++|+|++...+|... +|+|+||+.|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~s~G~Glr~~-~~~g~lr~d~a~~l~~~~~~~~~-~f~f~~g~~F 323 (323)
T PF01103_consen 261 NDNDNFPLNSDSFTSKDNIRSSVGVGLRYD-TPIGPLRFDYAYPLNKPPGDDRN-RFYFSIGQTF 323 (323)
T ss_pred ccCCCcCcccccccccccccceEEEEEEEe-cCcEEEEEEEEEEccCCCCCcce-EEEEEEeCCC
Confidence 87653210000 000136799999999996 79999999999999877666655 6999999988
No 9
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=99.93 E-value=8.4e-23 Score=216.39 Aligned_cols=392 Identities=19% Similarity=0.204 Sum_probs=258.0
Q ss_pred cccccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCCC
Q psy2168 25 MLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATP 104 (516)
Q Consensus 25 ~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~~ 104 (516)
.|..+ +.+|++|+|+|+....+..++..++.. .+++++- .++++..+.|.++.-.+ |++.+. |++.+
T Consensus 142 ~l~Vv---eG~i~~i~i~g~~~~~~~~~~~~~p~~---~g~~Ln~--~~lEq~l~~l~~~P~~q-a~~~l~----pg~~~ 208 (554)
T COG2831 142 RLQVV---EGRIEDIRITGDSDLRSVALRSLFPAH---RGDPLNL--RDLEQGLELLNRLPGVQ-ADAELV----PGSEP 208 (554)
T ss_pred EEEEe---ceEeeeEEEcCCCccchhhHHhhcccc---CCCCCCH--HHHHHHHHHhhhCcccc-ceeEEc----cCCCC
Confidence 34445 778999999999998888888888853 4888862 22234555555544444 455544 45678
Q ss_pred CCcEEEEEEEEecceeeEEEEEe-ecC-cce--EEEEEEeeeccCCCceEEEEEEEeeEEeE---EEEEEEeccccCCCC
Q psy2168 105 EHGYEITFRVKELKRYRAGVTTS-IGN-NEG--SVVVWGKMPNLYGRGELAEMSYVYGTKSL---VYNLTLRKPFFGPID 177 (516)
Q Consensus 105 ~~~v~l~i~v~E~~~~~~~~~~~-~g~-~~g--~~~l~~~~~Nl~G~g~~l~~~~~~~~~~~---~~~~~~~~P~~~~~~ 177 (516)
+..+|+|++++.+++++.++++ +|+ ..| +..+++.+.|++|.|+++.+++..+...+ .|+++|+.|+...
T Consensus 209 -G~S~l~i~~~~~~~~~~~~~~DN~G~~~tG~~r~~~~l~~dn~lglgD~l~~~~~~~~~~~~~~~~~~~Ys~P~g~~-- 285 (554)
T COG2831 209 -GESDLVIKVQQGKPWRVSASADNYGSKSTGRYRLGVGLSLDNPLGLGDQLSLSYSRSLDGQTTNNYSLSYSVPLGYW-- 285 (554)
T ss_pred -CccEEEEEeeeCCCeEEEEEecCCCCcCccceeeEeEEEecCCCcchhheeehhcccCCCcccceEEEEEEEEEccc--
Confidence 9999999999998999999997 564 334 79999999999999999999999855433 7999999998643
Q ss_pred ceEEEEEEEeeccc------CcccceeeeeeEEEEEeEeec---CeEEEEEEEEEEEEecCCCCCChHHHHHhhCCCccc
Q psy2168 178 SMLSGSLLRQVNEM------PASSCKLLEQGLILDYAILFP---TIKNSIEWNGLIREIQPASRGTPFAIRESAGYTLKS 248 (516)
Q Consensus 178 ~~~~~~~~~~~~~~------~~~~y~~~~~g~~~~l~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 248 (516)
.+.+...+..... ....|..++...++.+.|++. ..+.+++.++.+++....-.+....+ +.......
T Consensus 286 -~~~~~~s~~~y~~~~~~~~~~~~~~G~s~~~~~~l~~~l~R~~~~~~s~~~~~~~r~~~~~~~~~~~~~--q~r~~~~~ 362 (554)
T COG2831 286 -TFSLGASYSEYRQVLEGPFDVLDYQGKSQNLSLRLSHPLLRNRSSKLSLGLGLSHRRSENYLDDTEIEV--QRRRLTAV 362 (554)
T ss_pred -eeEEEeeeeeeEeecccCCceEEEecceEEEEEEeeeEEEecCcceEEEEEEEEEehhhhhhccccccc--cccccccE
Confidence 3333333322111 113455667778899999986 45666666666666654321111000 00000111
Q ss_pred eeEEEEEEecCCCCCCCCCcceeeeeeeeecCCCCcccccccccceeeeceeecccceeeeeccccCCCCCCCCCccccc
Q psy2168 249 SLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQG 328 (516)
Q Consensus 249 ~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~ 328 (516)
.++....+- .+ .| ..+..+.-.+|...-.
T Consensus 363 ~~gl~~~~~------~~-~~--------------------------------------------~~~~~l~~~~G~~~lG 391 (554)
T COG2831 363 ELGLSGRRY------LG-GG--------------------------------------------TLDASLGYRRGLGALG 391 (554)
T ss_pred EecceEEEE------ec-cc--------------------------------------------eecccchhhhCchhhc
Confidence 222221110 00 00 0000000111111111
Q ss_pred eeeee--ccC-CcceeeeEEEEEEEEEecCC-CcEEEEEeeeeeeecCCCCCccCcccceeeCCCCCccCCCCCCCCcCC
Q psy2168 329 SVEFA--GLG-GDVGFQKYSSLFQVNYPLGP-YITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKS 404 (516)
Q Consensus 329 ~~~~~--~~g-~d~~f~k~~~~~~~~~~l~~-~~~l~~~~~~G~i~~~~~~~~lp~~e~f~lGG~~~vRGy~~~~igp~~ 404 (516)
..... ..+ .+..|.++.+++++.+||.. .+.+...+..++.. ++++..|+|.+||..+||||..+
T Consensus 392 a~~~~~~~~~~~~~~f~~~~~~~~~~~~f~~~~~~~~~~~~~Q~s~-----~~L~s~e~fsiGg~~sVRGf~~~------ 460 (554)
T COG2831 392 ASKDDEETNGEPTSRFKKLNGNASLLQPFGLGPFLYATQFNAQYSG-----DPLLSSEKFSIGGRYSVRGFDGG------ 460 (554)
T ss_pred CCCCchhhcCCCCcceEEEEEeeEEEeecccccEEEEEEEEEEEcC-----CCCCcHHHeecCCCceecccCCC------
Confidence 00000 012 46789999999999999998 67777777777642 57999999999999999999975
Q ss_pred CCCCCcceeEEEeeEEEEeeCCCCCCCCCCCCCCceEEEEEecccccccCchhhhhhhhhcccCeeeeeeEEEEEeecce
Q psy2168 405 GGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGL 484 (516)
Q Consensus 405 ~~~~~gG~~~~~~~~El~~~l~~~~~~~~~~~~~l~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~s~G~Gir~~~t~~ 484 (516)
.+-||..+.++.|++|+++. . ..+++++|+|+|.+|..... ........++|+|+||.+..-
T Consensus 461 ---~lsgD~G~~~snel~~~~~~---~-----~~~~~y~f~D~G~v~~~~~~-------~~~~~~l~g~~~Glr~~~~~~ 522 (554)
T COG2831 461 ---SLSGDRGWYLSNELRWPLPP---G-----GALQPYVFVDYGKVYNNSAE-------YLSGETLAGAGLGLRGNLKDG 522 (554)
T ss_pred ---CccccceEEEEEEEEeeccC---C-----CceeEEEEEEeEEEeccccc-------cCCCCeeEEEEEeEEeeecCc
Confidence 34689999999999999963 1 12899999999999988321 235667899999999975333
Q ss_pred eEEEEEEEeeccccCCCC-ccccEEEEeeecC
Q psy2168 485 ARVEINYCFPYSYQRDDS-VVPGMQFGFGITF 515 (516)
Q Consensus 485 g~i~l~~a~~l~~~~~d~-~~~~~~f~ig~~F 515 (516)
...+|++|+|+.....-+ ....+.|.++++|
T Consensus 523 f~~~l~~g~pl~~p~~~~~~~~~~~~~~~~~f 554 (554)
T COG2831 523 FSYDLDLGRPLSKPAGFDNRRTVVGFSFSYSF 554 (554)
T ss_pred ceeEEEecccccCccccCCCCceeEEEEEEEC
Confidence 788999999997654432 2234888888776
No 10
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate. HlyA is directed by an uncleaved C-terminal targeting signal and the HlyD and HlyB translocator proteins [].; PDB: 2QDZ_A 3NJT_A.
Probab=99.84 E-value=5.7e-18 Score=174.93 Aligned_cols=346 Identities=18% Similarity=0.160 Sum_probs=173.6
Q ss_pred cccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCCCCCcEEEEEEEEecceeeEEEEEe-ecC-cce--EE
Q psy2168 60 EIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYEITFRVKELKRYRAGVTTS-IGN-NEG--SV 135 (516)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~~~~~v~l~i~v~E~~~~~~~~~~~-~g~-~~g--~~ 135 (516)
|...|++++. .+|++..+.|.++.-- +|++++.| ++.+ +..+|+|.+++.+++.+.++++ +|+ ..| .+
T Consensus 12 P~~~G~~Lnl--rdlEQgle~lnrl~~~-~~~~~i~P----G~~~-G~S~i~i~~~~~~~~~~~~~~DN~Gs~~TG~~q~ 83 (404)
T PF03865_consen 12 PNRKGKPLNL--RDLEQGLEQLNRLPSN-QAKIDILP----GEEP-GTSDIVIENQPSKPWSGSLSLDNSGSKSTGRYQG 83 (404)
T ss_dssp TT-TT-B--H--HHHHHHHHHH-S-SSE-EEEEEEEE-----SST-TEEEEEEEEEE-SS-EEEEEEEE-SSS-SS-EEE
T ss_pred CCCCCCCCCH--HHHHHHHHHhccCCCC-cceEEEec----CCCC-CEEEEEEEecccCCEEEEEEEecCCccccceEEE
Confidence 4566888872 3334566666665432 56666654 4567 8999999999999999999987 664 344 69
Q ss_pred EEEEeeeccCCCceEEEEEEEeeEE------eEEEEEEEeccccCCCCceEEEEEEEeeccc----Ccc--cceeeeeeE
Q psy2168 136 VVWGKMPNLYGRGELAEMSYVYGTK------SLVYNLTLRKPFFGPIDSMLSGSLLRQVNEM----PAS--SCKLLEQGL 203 (516)
Q Consensus 136 ~l~~~~~Nl~G~g~~l~~~~~~~~~------~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~----~~~--~y~~~~~g~ 203 (516)
.+.+...|++|.++.+++++..... .+.+++.|..|+. .|.+++...+.+... ... .+..++...
T Consensus 84 ~~~l~~dnplgl~D~lsls~~~~~~~~~~~~~~~~~~~YsvP~G---~~~ls~~~s~s~y~~~~~~~~~~~~~~G~s~~~ 160 (404)
T PF03865_consen 84 GATLSLDNPLGLNDQLSLSYSSSLDNPDSRYSRSYSLSYSVPYG---YWTLSLFASYSDYRYHQGLSYSTYDLSGDSRSL 160 (404)
T ss_dssp EEEEEEE-SSSSS-EEEEEEEE--S--SS-EEEEEEEEEEEEET---TEEEEEEEEEEEEE---SSSS-----EEEEEEE
T ss_pred EEEEEECCCccccceeEEEEeccccCcccCCceEEEEEEEeeee---ceEEEEEEEEeEEEEeeccccceEEeeeeEEEE
Confidence 9999999999999999999976543 2367899999985 346665555543221 112 234455567
Q ss_pred EEEEeEeec---CeEEEEEEEEEEEEecCCCCCChHHHHHhhCCCccceeEEEEEEecCCCCCCCCCcceeeeeeeeecC
Q psy2168 204 ILDYAILFP---TIKNSIEWNGLIREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGL 280 (516)
Q Consensus 204 ~~~l~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~ 280 (516)
.+.+.|++. ..+.++.....+++.+..-.+... ........++.+++.+... .+.-.....+..+.+..
T Consensus 161 ~~~~~~~l~R~~~~k~~l~~~l~~k~~~n~i~d~~i----~v~~~~lt~~~lgl~~~~~----~~~g~~~~~l~~~~G~~ 232 (404)
T PF03865_consen 161 GLRLSYVLYRSQNSKTSLSAGLSHKKSKNYINDIEI----EVQSRRLTSLELGLNHSRY----LGGGVLSANLSYSQGLP 232 (404)
T ss_dssp EEEEEEEEE--SSEEEEEEEEEEEEEEEEE--TTS-------EEEEEEEEEEEEEEEEE-----TTEEEEEEEEEEEE--
T ss_pred EEEeeEEEEECCCceEEEEEEEEEEEccccccccee----eeccceeeEEEeccceEEE----ecCcEEEEeEEEEeccC
Confidence 788888875 455566666666666552111110 0112223445555544321 22211222333332210
Q ss_pred CCCcccccccccceeeeceeecccceeeeeccccCCCCCCCCCccccceeeeeccCCcceeeeEEEEEEEEEecC--C-C
Q psy2168 281 GGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQVNYPLG--P-Y 357 (516)
Q Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~g~d~~f~k~~~~~~~~~~l~--~-~ 357 (516)
. +...+. | ....+.+.+..|.|..+.+.+++|+. + .
T Consensus 233 ~-----------------------------~ga~~~---~---------~~~~~~~~~~~f~k~~l~~~~~~~~~~~~~~ 271 (404)
T PF03865_consen 233 W-----------------------------FGAERD---P---------EDADGNGPDSQFTKWSLNASLYQPFQLGNQP 271 (404)
T ss_dssp ----------------------------------------------------------EEEEEE---EEEEEEEEETTEE
T ss_pred c-----------------------------cCCcCC---c---------hhccCCCcccceEEEEeehhhccceeecCcc
Confidence 0 000000 0 00011234678999988888877763 2 3
Q ss_pred cEEEEEeeeeeeecCCCCCccCcccceeeCCCCCccCCCCCCCCcCCCCCCCcceeEEEeeEEEEeeCCCCCCCCCCCCC
Q psy2168 358 ITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSD 437 (516)
Q Consensus 358 ~~l~~~~~~G~i~~~~~~~~lp~~e~f~lGG~~~vRGy~~~~igp~~~~~~~gG~~~~~~~~El~~~l~~~~~~~~~~~~ 437 (516)
+.+...+.+++. . ++|+..|+|.+||..+||||+.. .+.|+..+..+.||.|+++. +. .
T Consensus 272 ~~~~~~~~gQys----~-d~L~ssEq~siGG~~sVRGF~~~---------~lsGd~G~~~rNeLs~~~~~--~~-----~ 330 (404)
T PF03865_consen 272 FSYNSSLSGQYS----N-DNLYSSEQFSIGGRYSVRGFDES---------SLSGDSGWYLRNELSWPFPL--GN-----F 330 (404)
T ss_dssp EEEEEEEEEEE-----S-S-SSSSEE--S------TT-------------S--SS-SS--EESEEEEEEE---------S
T ss_pred EEEEEEEEEEEC----C-CCCChhheeccCCCceEcccCCC---------ceeecceEEEEEEEEeecCC--CC-----c
Confidence 455556666664 2 57999999999999999999965 35689999999999988753 21 2
Q ss_pred CceEEEEEecccccccCchhhhhhhhhcccCeeeeeeEEEEEeecceeEEEEEE--Eeec
Q psy2168 438 NFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINY--CFPY 495 (516)
Q Consensus 438 ~l~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~s~G~Gir~~~t~~g~i~l~~--a~~l 495 (516)
.+..++|+|+|.++..... .......++++|+++. ..-..+.+++ ++++
T Consensus 331 ~l~py~g~D~G~v~~~~~~--------~~~~~~~g~~~Gl~~~-~~~~~~dl~vs~g~~l 381 (404)
T PF03865_consen 331 SLTPYLGLDYGRVRGNKNN--------QGWRSLAGLSAGLRLR-YKQAQLDLEVSRGWPL 381 (404)
T ss_dssp S-EEEEEEEEEEEEESSSS---------EEEEEEEEEEEEEEE-SSSEEE----------
T ss_pred eEEEEEEEEEEEEecCCCC--------CCCceEEEEEEEEEEE-Ecceeeeecccccccc
Confidence 5888999999999976431 1122235555555554 2345665555 5666
No 11
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.28 E-value=3.9e-06 Score=65.52 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=57.1
Q ss_pred EEEEEEEEECC-CccchHHHHhhcccccccccccHHHHHHHHHHHHHhhh----cCCc-ceeeEEEEecCCCCCCCCCCc
Q psy2168 34 ARVDRVKVEGI-GRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLE----RLQC-FQQVQIEIDASKGPDATPEHG 107 (516)
Q Consensus 34 ~~i~~I~v~G~-~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~----~~~~-f~~V~i~~~~~~~~~~~~~~~ 107 (516)
++|++|.|+|+ +.++++.|++.+.+.+ |++++. .++++..++|. ++|+ |.+|++.+.+ .+ +.
T Consensus 1 ~~i~~I~i~Gn~~~~~~~~l~~~l~~~~---G~~~~~--~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~------~~-~~ 68 (78)
T PF07244_consen 1 YRIGEINIEGNLKKFSDEELRRELGLKP---GDPFNP--EKIEEDIERLQDYYKDKGYFFAKVSPEIDP------DD-NT 68 (78)
T ss_dssp CEEEEEEEESE-SSSHHHHHHHCHSS-T---TSBECH--HHHHHHHHHHHHHHHTTSCSEEEEEEEEEE------ET-TE
T ss_pred CEEEEEEEEcCceEeCHHHHHhhcCCCC---CCEeCH--HHHHHHHHHHHHHHHHcCCcceEEEEEEEE------cC-CE
Confidence 47999999998 9999999999998555 888864 22245777777 9999 8899888653 34 67
Q ss_pred EEEEEEEEec
Q psy2168 108 YEITFRVKEL 117 (516)
Q Consensus 108 v~l~i~v~E~ 117 (516)
++|.+.|+|+
T Consensus 69 v~l~~~V~Eg 78 (78)
T PF07244_consen 69 VDLTFNVDEG 78 (78)
T ss_dssp EEEEEEEEEC
T ss_pred EEEEEEEEeC
Confidence 9999999984
No 12
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=98.12 E-value=0.0002 Score=79.40 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=67.3
Q ss_pred CCCCCCccccc--ccccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHH-HHHH-HHHHHHHhhhcCCcceee
Q psy2168 15 DELDSDPNDAM--LGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFG-QLIF-QCHEVRNQLERLQCFQQV 90 (516)
Q Consensus 15 ~~~~~~~~~~~--~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~-~~~~-~~~~~~~~L~~~~~f~~V 90 (516)
..+++|++... +...+|+++++.+|+|+|+.....+.|++.+.+++ |+.++ +.++ .+++..+.+.+.||- -+
T Consensus 242 ~~~~~~k~~~~vt~~V~EG~~y~~~~i~i~g~~~~~~~el~~~~~~~~---g~~fn~~~i~~~~~~I~~~~~~~GY~-~a 317 (766)
T COG4775 242 VSLDPDKKGVTVTYTVKEGPQYKFGSVLIEGNLAGVSEELEKLLKVKP---GKLFNRKKIEDDADKIKERYARYGYA-FA 317 (766)
T ss_pred ecccCCCccEEEEEEEccCCceEEEEEEEEcCccCcHHHHHHhhccCC---CceEcHHHHHHHHHHHHHHHHhcCce-ee
Confidence 34444555554 45569999999999999999988999999986533 55553 1122 224677777778873 23
Q ss_pred EEEEecCCCCCCCCCCcEEEEEEEEecceeeEE
Q psy2168 91 QIEIDASKGPDATPEHGYEITFRVKELKRYRAG 123 (516)
Q Consensus 91 ~i~~~~~~~~~~~~~~~v~l~i~v~E~~~~~~~ 123 (516)
+|.+.+. ++... ..++|.+.|.|+++..+.
T Consensus 318 ~V~p~~~--~n~~~-~tv~v~~~V~~g~~~~V~ 347 (766)
T COG4775 318 NVSPQPD--ANDEN-KTVDVVFRVDEGDRVYVR 347 (766)
T ss_pred Eeeeecc--cCCCC-cEEEEEEEEEcCCceeee
Confidence 4443332 22333 578999999999865443
No 13
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=98.07 E-value=0.0024 Score=71.95 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=61.6
Q ss_pred ccccccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHH-HHHHHHH-HHHHhhhcCCcceeeEEEEecCCCCC
Q psy2168 24 AMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFG-QLIFQCH-EVRNQLERLQCFQQVQIEIDASKGPD 101 (516)
Q Consensus 24 ~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~-~~~~~~~-~~~~~L~~~~~f~~V~i~~~~~~~~~ 101 (516)
..+.+.+|++++|++|.|+|+..++++.|++.+++.+ |++++ +.+++.. +..+.+.+.|+. .+++.+.+. ++
T Consensus 231 i~~~v~eG~~~~i~~i~i~g~~~~~~~~l~~~~~~~~---G~~~~~~~~~~~~~~l~~~y~~~Gy~-~~~v~~~~~--~~ 304 (741)
T TIGR03303 231 ITYNIKEGEQYKFGEVTIEGDLIGPDEELKKLLKIKK---GEVFNRSKVTKIVKAIKDLLGEKGYA-FANVNPRPQ--IN 304 (741)
T ss_pred EEEEeccCCCEEEEeEEEEeccCCcHHHHHHhhcCCC---CCeeCHHHHHHHHHHHHHHHHhcCCc-eeEEEecce--EC
Confidence 4467779999999999999999999999999988544 87774 2333322 233334446763 456654321 22
Q ss_pred CCCCCcEEEEEEEEeccee
Q psy2168 102 ATPEHGYEITFRVKELKRY 120 (516)
Q Consensus 102 ~~~~~~v~l~i~v~E~~~~ 120 (516)
... +.++|.+.|.|.++.
T Consensus 305 ~~~-~~v~v~~~v~eg~~~ 322 (741)
T TIGR03303 305 DEN-KTVDLTFKVDPGKRV 322 (741)
T ss_pred CCC-CEEEEEEEEccCCeE
Confidence 233 578999999998753
No 14
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=97.60 E-value=0.04 Score=62.75 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=62.0
Q ss_pred cccccccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHHH-HHHHH-HHHHHhhhcCCcc-eeeEEEEecCCC
Q psy2168 23 DAMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQ-LIFQC-HEVRNQLERLQCF-QQVQIEIDASKG 99 (516)
Q Consensus 23 ~~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~-~~~~~-~~~~~~L~~~~~f-~~V~i~~~~~~~ 99 (516)
++.+.+.+|++++|++|.|+|+...+++.+++.+.+++ |+.++. .++++ +...+.+.+.||+ .+|... +.
T Consensus 255 ~i~~~I~eG~~~~i~~i~~~G~~~~~~~~l~~~~~~k~---G~~~~~~~~~~~~~~i~~~~~~~GY~~a~v~~~--~~-- 327 (803)
T PRK11067 255 YITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEP---GELYNGTKVTKMEDDIKKLLGRYGYAYPRVQTQ--PE-- 327 (803)
T ss_pred EEEEEEeeCCcEEEEEEEEEecCCCCHHHHHHhhcCCC---CceeCHHHHHHHHHHHHHHHHhCCCCcceeeec--cc--
Confidence 34567889999999999999999888999999888544 777642 22222 3445556668885 344322 21
Q ss_pred CCCCCCCcEEEEEEEEeccee
Q psy2168 100 PDATPEHGYEITFRVKELKRY 120 (516)
Q Consensus 100 ~~~~~~~~v~l~i~v~E~~~~ 120 (516)
.+... +.++|.+.|.|.++.
T Consensus 328 ~~~~~-~~v~i~~~v~eG~~y 347 (803)
T PRK11067 328 INDAD-KTVKLHVNVDAGNRF 347 (803)
T ss_pred cCCCC-CEEEEEEEEeeCCeE
Confidence 12234 678999999998754
No 15
>PLN03138 Protein TOC75; Provisional
Probab=96.32 E-value=0.03 Score=61.72 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=75.6
Q ss_pred cccccccCCCCCCCCCCCcccccc-cccCC-ccEEEEEEEEEC----CCccchHHHHhhcccccccccccHHHHHHHHHH
Q psy2168 3 SVHAKEIPSQPYDELDSDPNDAML-GHVMV-APARVDRVKVEG----IGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHE 76 (516)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~I~v~G----~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~ 76 (516)
..||.|-+++.+|.--+--+..+. +.-++ ++++|.+|.|.| ++...++.|...+.+++ +..+++ .++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vs~v~~~~~~~~~~~~~e~~l~~~i~~kp---G~v~tr--sqLq~ 189 (796)
T PLN03138 115 DAHADEEQSGDWDSHGLPVNITVPLSKLSGFKRYKVSEIEFFDRRRNTTVGTEDSFFEMVTLRP---GGVYTK--AQLQK 189 (796)
T ss_pred hhhcCCccCCCCccccCcccceEechhcCCcceEEEEEEEEeccccCCCcchHHHHHHHHhcCC---CCccCH--HHHHH
Confidence 467888888888766555443322 22222 579999999987 55567777888787544 887764 33457
Q ss_pred HHHhhhcCCcceeeEEEEecCCCCCCCCCCcEEEEEEEEecc
Q psy2168 77 VRNQLERLQCFQQVQIEIDASKGPDATPEHGYEITFRVKELK 118 (516)
Q Consensus 77 ~~~~L~~~~~f~~V~i~~~~~~~~~~~~~~~v~l~i~v~E~~ 118 (516)
..++|+++|+|++|.+.+.+. .+ +.+.|.|.++|..
T Consensus 190 dv~~I~~tG~F~~V~~~v~~~-----~d-g~v~V~~~i~Eg~ 225 (796)
T PLN03138 190 ELETLASCGMFEKVDLEGKTK-----PD-GTLGLTISFTEST 225 (796)
T ss_pred HHHHHHhcCCceEEEEEEEeC-----CC-CeEEEEEEEEeCC
Confidence 889999999999999987643 34 6789999999976
No 16
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=93.82 E-value=0.21 Score=55.89 Aligned_cols=76 Identities=9% Similarity=0.075 Sum_probs=56.7
Q ss_pred EEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCCCCCcEEEEEEE
Q psy2168 35 RVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYEITFRV 114 (516)
Q Consensus 35 ~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~~~~~v~l~i~v 114 (516)
-|.+|.|+|.+.--+.++...+...+ |..+.. .++++..++|+++|+|++|.+.+. .++ .++.|++.|
T Consensus 109 l~~e~~~~~~~~~~~~~~~~~~~~~~---G~~~t~--~~~~~d~~~i~~tG~F~~V~~~~~------~~~-~Gv~v~~~V 176 (718)
T TIGR00992 109 LQKELEVLATCGMFEKVDYEGKTTQD---GRLGTT--ISFAESVWAIADRFRCINVGLMPQ------SKP-LEMDVDMEV 176 (718)
T ss_pred eeeeeeeecCcHHHHHHHhhccccCC---CCcccH--HHHHHHHHHHHHcEEeeeeEEeec------cCC-CceEEEEEE
Confidence 48899999997555555665555444 887753 344679999999999999999843 356 789999999
Q ss_pred EecceeeE
Q psy2168 115 KELKRYRA 122 (516)
Q Consensus 115 ~E~~~~~~ 122 (516)
+|++....
T Consensus 177 ~enP~~~~ 184 (718)
T TIGR00992 177 KEKPEFTR 184 (718)
T ss_pred ecCCEEEE
Confidence 99875433
No 17
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=93.40 E-value=0.18 Score=37.82 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=46.3
Q ss_pred EEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCCCCCcEEEEEEE
Q psy2168 35 RVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYEITFRV 114 (516)
Q Consensus 35 ~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~~~~~v~l~i~v 114 (516)
.|.+|.|+|+...+...|...+.+.. +..+-. ...++..++|.+..+.++|.+.-. -| + .|.|.|
T Consensus 2 ~v~~I~V~G~~~~~~~~i~~~~~~~~---~~~~~~--~~~~~~~~~l~~~p~V~~v~V~r~-------~P-~--~l~I~V 66 (69)
T PF08478_consen 2 RVKKIEVSGNSYLSKEEILQALGIQK---GKNLFS--LDLKKIEQRLEKLPWVKSVSVSRR-------FP-N--TLEIKV 66 (69)
T ss_dssp S--EEEEES-SSS-HHHHHHHHCTTS---TTTCCC--SHHHHHHHCCCCTTTEEEEEEEEE-------TT-T--EEEEEE
T ss_pred CccEEEEECCCcCCHHHHHHHhCcCC---CCeEEE--ECHHHHHHHHHcCCCEEEEEEEEe-------CC-C--EEEEEE
Confidence 47899999999999999999988533 543310 112468899999999999999853 23 3 477777
Q ss_pred Eec
Q psy2168 115 KEL 117 (516)
Q Consensus 115 ~E~ 117 (516)
+|+
T Consensus 67 ~Er 69 (69)
T PF08478_consen 67 KER 69 (69)
T ss_dssp EE-
T ss_pred EeC
Confidence 873
No 18
>PRK05529 cell division protein FtsQ; Provisional
Probab=89.79 E-value=1.2 Score=43.14 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=55.4
Q ss_pred CccEEEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCCCCCcEEE
Q psy2168 31 VAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYEI 110 (516)
Q Consensus 31 ~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~~~~~v~l 110 (516)
.+...|.+|+|+|+++++.+-|...+.... +..+-.+ ..+..+++|.+..+.++|+++-.. | + .|
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~---g~~l~~v--d~~~~~~~l~~~P~V~sa~V~r~~-------P-~--tl 122 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQF---GKPLPLV--DPETVRKKLAAFPLIRSYSVESKP-------P-G--TI 122 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccC---CCcceeE--CHHHHHHHHhcCCCEeEEEEEEeC-------C-C--EE
Confidence 367899999999999999999999887432 5544211 114578999999999999998532 3 3 47
Q ss_pred EEEEEecce
Q psy2168 111 TFRVKELKR 119 (516)
Q Consensus 111 ~i~v~E~~~ 119 (516)
.|.|+|+..
T Consensus 123 ~I~V~Er~p 131 (255)
T PRK05529 123 VVRVVERVP 131 (255)
T ss_pred EEEEEEeee
Confidence 888899763
No 19
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=79.32 E-value=11 Score=28.69 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=41.2
Q ss_pred EEEEEEEECCCccchHHHHhhcccccccccccH--HHHHHHHHHHHHhhhcCCcc-eeeEEEEecCCCCCCCCCCcEEEE
Q psy2168 35 RVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTF--GQLIFQCHEVRNQLERLQCF-QQVQIEIDASKGPDATPEHGYEIT 111 (516)
Q Consensus 35 ~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~--~~~~~~~~~~~~~L~~~~~f-~~V~i~~~~~~~~~~~~~~~v~l~ 111 (516)
.|.+|+++|++..++..+.+.+.. +.++.+ +++..-+++..+.+.+.||. ..|.+- + + .-. ++ .|.
T Consensus 2 ~i~~i~~~G~~~~~~~~l~~~~~~---~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p--~-q---~i~-~G-~l~ 70 (76)
T PF08479_consen 2 PIKGIRFEGNTLLPEEELQAILAP---YIGRCLTLADLQQLADALTNYYREKGYITSRVYLP--P-Q---DIS-DG-VLT 70 (76)
T ss_dssp ---EEEEES-TSSSCCHHHHHHGG---GTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEE--E-E---EET-TS-EEE
T ss_pred CeEEEEEECCCcCCHHHHHHHHHH---hcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeC--C-e---ecC-CC-EEE
Confidence 588999999999999999988773 335544 44433345677777778997 556663 2 1 112 23 377
Q ss_pred EEEEe
Q psy2168 112 FRVKE 116 (516)
Q Consensus 112 i~v~E 116 (516)
+.|.|
T Consensus 71 i~V~e 75 (76)
T PF08479_consen 71 IRVVE 75 (76)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 77766
No 20
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=78.63 E-value=1.1e+02 Score=33.44 Aligned_cols=77 Identities=9% Similarity=0.047 Sum_probs=50.7
Q ss_pred ccEEEEEEEEECCCccchHHHHhhcccccccccccH--HHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCCCCCcEE
Q psy2168 32 APARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTF--GQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYE 109 (516)
Q Consensus 32 ~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~--~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~~~~~v~ 109 (516)
+.+.|.+|+++|+.......++..+.. +.|+.+ .++..-+++..+.+...||.-..-+- |.+ ... .=.
T Consensus 71 ~~f~I~~i~l~g~~~~~~~~l~~~~~~---~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~l--p~Q---~i~--~G~ 140 (554)
T COG2831 71 PCFPINRIELEGNTLLDALELQAILAP---YLGRCLGLADLNQLASALTNLYIDRGYVTTRALL--PPQ---DLK--SGT 140 (554)
T ss_pred ceEEEEEEEEeCCcccChHHHHHhhHH---hhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEc--CCC---ccc--CCe
Confidence 569999999999988888899987662 335544 34333335778888888997654332 211 122 224
Q ss_pred EEEEEEecc
Q psy2168 110 ITFRVKELK 118 (516)
Q Consensus 110 l~i~v~E~~ 118 (516)
|.|.|.|.+
T Consensus 141 l~l~VveG~ 149 (554)
T COG2831 141 LRLQVVEGR 149 (554)
T ss_pred EEEEEeceE
Confidence 777788875
No 21
>PF13505 OMP_b-brl: Outer membrane protein beta-barrel domain; PDB: 3DZM_A 2LHF_A 1Q9F_A 1ORM_A 1Q9G_A 1QJ9_A 1QJ8_A 3QRA_A 3QRC_B.
Probab=67.03 E-value=33 Score=29.81 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=48.4
Q ss_pred EEeeEEEEeeCCCCCCCCCCCCCCceEEEEEecccccccCchhhhhhhhhcccCeeeeeeEEEEEeecceeEEEEEEEee
Q psy2168 415 WQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINYCFP 494 (516)
Q Consensus 415 ~~~~~El~~~l~~~~~~~~~~~~~l~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~s~G~Gir~~~t~~g~i~l~~a~~ 494 (516)
+.+.+.+++++. + .+.+++.+.+|........... ........+...+|+|+++.+++-..|++.+.+.
T Consensus 86 ~~~~~~~~~~~~---~-------~~~~y~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~g~G~~y~~~~~~~l~~~y~~~ 154 (176)
T PF13505_consen 86 IGLNAGYNFPLS---D-------KFSPYVGAGYGYYYYEIDIDDF-SSSDSDSGFGFGLGAGVEYNISDNFSLNAEYRYT 154 (176)
T ss_dssp EEEEEEEEEEES---S-------SEEEEEEEEEEEEEEEECSTSE---EEEEEEEEEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred eeeeEEEEeccC---C-------cEEEEEEEeeEEEEEEEeeccc-eeccCCCceEEEEEEEEEEEECCCEEEEEEEEEE
Confidence 445555555552 2 3666666666544322111000 0012244567888999999887777777777664
Q ss_pred ccc-cCCCCccccEEEEeeecC
Q psy2168 495 YSY-QRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 495 l~~-~~~d~~~~~~~f~ig~~F 515 (516)
... ...|.....+.+++++.|
T Consensus 155 ~~~~~~~~~~~~~~~~g~~y~F 176 (176)
T PF13505_consen 155 FYDSNKNDYDNNGFQLGVGYRF 176 (176)
T ss_dssp EE--E-TTEEEEEEEEEEEEEE
T ss_pred EEEeeccCCcEEEEEEEEEEEC
Confidence 221 112333335888888877
No 22
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=65.92 E-value=1.3e+02 Score=33.04 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=27.0
Q ss_pred ceeEEEEEEecCCCCCCCCCcceeeeeeeee--cCCCCc
Q psy2168 248 SSLKFITSLDKRDDKILPRHGQFCQGSVEFA--GLGGDV 284 (516)
Q Consensus 248 ~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~--~~g~~~ 284 (516)
.++.+.+.+|+ |+..+|+.|....+..+.+ .++++.
T Consensus 402 ~g~~~~~~~~~-dd~~~Pt~G~~~~~~~~~s~~~~~s~~ 439 (594)
T COG0729 402 PGVEFSYTRDT-DDGLFPTWGDRLDLTIGPSYEALGSDV 439 (594)
T ss_pred cceEEEEEEcc-CCCCCCCccceeeeeeeeccccccCch
Confidence 46677888888 9999999999888777554 344554
No 23
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=63.65 E-value=17 Score=35.50 Aligned_cols=69 Identities=16% Similarity=0.335 Sum_probs=51.6
Q ss_pred EEEEEEEEECCCccchHHHHhhcccccccccccH-HHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCCCCCcEEEEE
Q psy2168 34 ARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTF-GQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYEITF 112 (516)
Q Consensus 34 ~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~~~~~v~l~i 112 (516)
..|..|.|+||.+++++.|.+.+.+.. +..+ .. ..++.+++|.+..+.++|.|+= . =| + .+.|
T Consensus 60 ~~i~~v~v~Gn~~~s~~~I~~~~~l~~---~~~~~~l---d~~~~~~~i~~~PwVk~a~V~r---~----~P-n--tv~I 123 (269)
T COG1589 60 FPIRKVSVSGNNQVSEEDILKALGLDG---GTSFLTL---DLNAIRENIEKLPWVKSAEVRR---Q----FP-N--TLEI 123 (269)
T ss_pred ccceEEEEecCcccCHHHHHHHhhhcc---CCceEEE---cHHHHHHHHHhCCCeEEEEEEE---e----CC-C--cEEE
Confidence 469999999999999999999888632 3333 21 1146889999999999999982 1 23 3 4678
Q ss_pred EEEecc
Q psy2168 113 RVKELK 118 (516)
Q Consensus 113 ~v~E~~ 118 (516)
.|+|+.
T Consensus 124 ~v~Er~ 129 (269)
T COG1589 124 EVVERE 129 (269)
T ss_pred EEEEee
Confidence 889975
No 24
>PRK09408 ompX outer membrane protein X; Provisional
Probab=58.22 E-value=67 Score=28.99 Aligned_cols=45 Identities=27% Similarity=0.451 Sum_probs=26.8
Q ss_pred CeeeeeeEEEEEeecceeEEEEEEEeeccccCCCCccccEEEEeeecC
Q psy2168 468 ELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 468 ~~~~s~G~Gir~~~t~~g~i~l~~a~~l~~~~~d~~~~~~~f~ig~~F 515 (516)
..-.++|+|+.+.+ .-.+.++.++--.... +.....|.+++|+.|
T Consensus 127 ~~g~~yGAGvq~np--~~nv~id~~Ye~S~~~-~~~~~~~~vGvgYrF 171 (171)
T PRK09408 127 DYGFSYGAGLQFNP--MENVALDFSYEQSRIR-SVDVGTWIAGVGYRF 171 (171)
T ss_pred cccEEEEeeEEEEe--cCCEEEEEEEEEeecC-CcccceEEEeeEEEC
Confidence 34577999999864 4444444554422211 222234999999988
No 25
>PRK10775 cell division protein FtsQ; Provisional
Probab=47.57 E-value=58 Score=31.92 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=50.3
Q ss_pred ccEEEEEEEEECCCc-cchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCCCCCcEEE
Q psy2168 32 APARVDRVKVEGIGR-TYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYEI 110 (516)
Q Consensus 32 ~~~~i~~I~v~G~~~-t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~~~~~v~l 110 (516)
+...|.+|.|+|+.+ ++.+.|+..+.. ....+..|.- .++..+++|.++.+..+|.|+-. =| + .|
T Consensus 54 ~~~pl~~V~V~G~~~~~~~~~I~~~i~~-~~~~g~f~~~---Dl~~i~~~l~~lPWV~~a~VrR~-------wP-d--tL 119 (276)
T PRK10775 54 QRLPLSKLVVTGERHYTTNDDIRQAILA-LGAPGTFMTQ---DVNIIQQQIERLPWIKQVSVRKQ-------WP-D--EL 119 (276)
T ss_pred CCCceeEEEEeCCeeeCCHHHHHHHHhh-ccCCCCceEE---cHHHHHHHHHcCCCeeEEEEEEe-------CC-C--cE
Confidence 456789999999986 667777775531 0122443321 12458899999999999999833 23 3 57
Q ss_pred EEEEEecce
Q psy2168 111 TFRVKELKR 119 (516)
Q Consensus 111 ~i~v~E~~~ 119 (516)
.|.|+|+.+
T Consensus 120 ~V~V~Er~P 128 (276)
T PRK10775 120 KIHLVEYVP 128 (276)
T ss_pred EEEEEEeec
Confidence 888899763
No 26
>PF06316 Ail_Lom: Enterobacterial Ail/Lom protein; InterPro: IPR000758 Virulence-related outer membrane proteins are expressed in Gram-negative bacteria and are essential to bacterial survival within macrophages and for eukaryotic cell invasion. Members of this group include: PagC, required by Salmonella typhimurium for survival in macrophages and for virulence in mice [] Rck outer membrane protein of the S. typhimurium virulence plasmid [] Ail, a product of the Yersinia enterocolitica chromosome capable of mediating bacterial adherence to and invasion of epithelial cell lines [] OmpX from Escherichia coli that promotes adhesion to and entry into mammalian cells. It also has a role in the resistance against attack by the human complement system [] a Bacteriophage lambda outer membrane protein, Lom [] The crystal structure of OmpX from E. coli reveals that OmpX consists of an eight-stranded antiparallel all-next-neighbour beta barrel []. The structure shows two girdles of aromatic amino acid residues and a ribbon of nonpolar residues that attach to the membrane interior. The core of the barrel consists of an extended hydrogen-bonding network of highly conserved residues. OmpX thus resembles an inverse micelle. The OmpX structure shows that the membrane-spanning part of the protein is much better conserved than the extracellular loops. Moreover, these loops form a protruding beta sheet, the edge of which presumably binds to external proteins. It is suggested that this type of binding promotes cell adhesion and invasion and helps defend against the complement system. Although OmpX has the same beta-sheet topology as the structurally related outer membrane protein A (OmpA) IPR000498 from INTERPRO, their barrels differ with respect to the shear numbers and internal hydrogen-bonding networks.; GO: 0009279 cell outer membrane
Probab=45.34 E-value=35 Score=31.36 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=34.6
Q ss_pred CeeeeeeEEEEEeecceeEEEEEEEeeccccCCCCccccEEEEeeecC
Q psy2168 468 ELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 468 ~~~~s~G~Gir~~~t~~g~i~l~~a~~l~~~~~d~~~~~~~f~ig~~F 515 (516)
.....+|+|+.+ .|...+.+|+++--. ..+|....+|..+||+.|
T Consensus 155 ~tslAy~AGvQ~--Np~e~v~iDv~YEgS-~~Gd~~~nGF~vGvGYrF 199 (199)
T PF06316_consen 155 KTSLAYGAGVQF--NPNENVVIDVGYEGS-GSGDWRTNGFNVGVGYRF 199 (199)
T ss_pred cceeeecccEEE--cCCccEEEEEEeecc-ccCCceeCCEEEeeeecC
Confidence 446788888877 489999999998632 235666678999999988
No 27
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=39.56 E-value=4.2e+02 Score=26.86 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=16.3
Q ss_pred eeEEEEEeEeec-CeEEEEEEEEEEEEec
Q psy2168 201 QGLILDYAILFP-TIKNSIEWNGLIREIQ 228 (516)
Q Consensus 201 ~g~~~~l~~~~~-~~~~~l~~~~~~~~~~ 228 (516)
..+++.+.|.+. ++...+.+.+..++..
T Consensus 297 ~~~~~~~~h~~~~~l~~~~~~~~~~~~y~ 325 (381)
T PF10082_consen 297 TSVSLGWTHQLTPRLSLSLSAGYENRDYQ 325 (381)
T ss_pred EEEEEEEEEEeeeeEEEEEEEEEEEeEcC
Confidence 345566666665 5566666665555553
No 28
>PRK15240 resistance to complement killing; Provisional
Probab=39.55 E-value=70 Score=29.26 Aligned_cols=44 Identities=20% Similarity=0.387 Sum_probs=27.1
Q ss_pred eeeeeeEEEEEeecceeEEEEEEEeeccccCCCCccccEEEEeeecC
Q psy2168 469 LRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 469 ~~~s~G~Gir~~~t~~g~i~l~~a~~l~~~~~d~~~~~~~f~ig~~F 515 (516)
....+|+|+.+.+ .=.+.++.++-.... .+..-.+|.+++|+.|
T Consensus 142 t~~ayGaGv~~n~--~~n~~id~~Ye~s~~-~~~~~~~~~vGvgYrF 185 (185)
T PRK15240 142 TGFAWGAGVQFNP--VENVVIDLGYEGSKV-GAAKLNGVNVGVGYRF 185 (185)
T ss_pred ceEEEEEeEEEEe--cCCEEEEEEEEEecc-CcceeCeEEEEeEEEC
Confidence 4567799998864 445555555543222 1222335999999988
No 29
>PF11059 DUF2860: Protein of unknown function (DUF2860); InterPro: IPR016896 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.90 E-value=4.8e+02 Score=25.85 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=37.2
Q ss_pred EEEEEEeccccCCCCceEEEEEEEeecccCcccceeeeeeEEEEEeEeecCeEEEEEEEEEEEEe
Q psy2168 163 VYNLTLRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREI 227 (516)
Q Consensus 163 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~~~~l~~~~~~~~~~l~~~~~~~~~ 227 (516)
.+.++|..|+ ...+.+...+.|...+-+-.-..-++.++.+++.+.+.+..+.+.+.+..++.
T Consensus 170 ~~~~~y~~~l--s~~~~L~P~l~Y~~~dAdG~A~S~~~~g~~ls~~~~~~rh~~~lt~~y~~~~Y 232 (297)
T PF11059_consen 170 YLKGSYRLPL--SQTSFLTPSLNYTQRDADGDAMSYDSYGAELSYFKRIGRHSLALTASYSKRDY 232 (297)
T ss_pred EEEEEEEEEe--cCCcEEeeEEEEEEecCCCceeccCccCeEEEeeeEcccceEEEEEecccccc
Confidence 5778888887 34557777887766443322233345567777777666544555554444444
No 30
>PF01389 OmpA_membrane: OmpA-like transmembrane domain; InterPro: IPR000498 The ompA-like transmembrane domain is present in a number of different outer membrane proteins of several Gram-negative bacteria. Many of the proteins having this domain in the N-terminal also have the conserved bacterial outer membrane protein domain IPR006664 from INTERPRO at the C terminus. The outer membrane protein A of Escherichia coli (OmpA), is one of the most studied proteins in this group []. It has a multifunctional role. OmpA is required for the action of colicins K and L and for the stabilisation of mating aggregates in conjugation. It also serves as a receptor for a number of T-even like phages and can act as a porin with low permeability that allows slow penetration of small solutes []. OmpA consists of a regular, extended eight-stranded beta-barrel and appears to be constructed like an inverse micelle with large water-filled cavities, but does not form a pore. The cavities seem to be highly conserved during evolution. The structure corroborates the concept that all outer membrane proteins consist of beta-barrels []. The beta-barrel membrane anchor appears to be the outer membrane equivalent of the single-chain alpha-helix anchor of the inner membrane.; GO: 0009279 cell outer membrane, 0016021 integral to membrane; PDB: 1G90_A 1QJP_A 3NB3_C 1BXW_A 2GE4_A 2JMM_A 2K0L_A.
Probab=33.84 E-value=3.6e+02 Score=24.42 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=23.6
Q ss_pred ccCeeeeeeEEEEEeecceeEEEEEEEee
Q psy2168 466 GEELRISYGIGLAIRFAGLARVEINYCFP 494 (516)
Q Consensus 466 ~~~~~~s~G~Gir~~~t~~g~i~l~~a~~ 494 (516)
...+..-+|+|+.+.+++-..+|+.|-+-
T Consensus 123 ~~~~s~~~g~G~eY~lt~~~~~rleYq~~ 151 (183)
T PF01389_consen 123 DDGVSPLAGLGLEYALTPNWSLRLEYQYI 151 (183)
T ss_dssp EEEEEEEEEEEEEEEECTTEEEEEEECCE
T ss_pred ccccceEEEEEEEEEeCcCceeEEEEEEE
Confidence 34566779999999999999999999763
No 31
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []. D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane
Probab=32.75 E-value=33 Score=33.73 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=4.9
Q ss_pred EEEEeeeeeeec
Q psy2168 360 AQASLDAGLLGS 371 (516)
Q Consensus 360 l~~~~~~G~i~~ 371 (516)
..+.+++.+..+
T Consensus 153 ~k~~~~~~~~~~ 164 (323)
T PF01103_consen 153 YKFELSARYYYP 164 (323)
T ss_pred EEEEEEEEEEEE
Confidence 344444444333
Done!