Query psy2168
Match_columns 516
No_of_seqs 122 out of 1330
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 18:03:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qdz_A TPSB transporter FHAC; 100.0 9.5E-35 3.3E-39 312.9 40.7 398 24-515 127-554 (554)
2 3q6b_A Outer membrane protein 98.8 1E-08 3.5E-13 93.7 7.1 84 24-116 106-189 (189)
3 2x8x_X TLR1789 protein, OMP85; 98.1 3.4E-06 1.2E-10 79.3 6.6 87 22-118 143-234 (235)
4 2qdf_A OMP85, outer membrane p 97.9 1.6E-05 5.4E-10 79.1 8.2 89 23-121 239-332 (335)
5 3mc9_A ALR2269 protein; polype 97.8 2.3E-06 7.8E-11 84.4 0.1 86 23-118 211-308 (316)
6 3efc_A OMP85, outer membrane p 97.5 1.1E-05 3.7E-10 82.3 -0.6 68 24-96 320-387 (395)
7 3mc9_A ALR2269 protein; polype 97.3 0.00058 2E-08 67.1 8.2 79 29-119 57-139 (316)
8 3efc_A OMP85, outer membrane p 97.1 0.001 3.6E-08 67.5 8.6 91 23-121 238-331 (395)
9 2x8x_X TLR1789 protein, OMP85; 96.9 0.0023 7.7E-08 59.7 8.5 76 31-118 2-77 (235)
10 3q6b_A Outer membrane protein 96.3 0.018 6.2E-07 51.8 10.0 90 24-121 25-117 (189)
11 2qdf_A OMP85, outer membrane p 95.7 0.033 1.1E-06 54.8 9.1 91 23-121 148-251 (335)
12 2vh1_A FTSQ, cell division pro 79.3 3.9 0.00013 37.1 6.9 69 36-119 1-72 (220)
13 2vh2_A FTSQ, cell division pro 79.1 2.9 9.8E-05 39.1 6.0 74 31-119 23-98 (255)
14 3qra_A AIL, attachment invasio 59.5 25 0.00087 29.8 7.2 46 467-515 112-157 (157)
15 2lhf_A Outer membrane protein 57.3 56 0.0019 28.4 9.2 53 439-493 90-142 (179)
16 2qdz_A TPSB transporter FHAC; 55.0 11 0.00037 39.2 5.0 77 31-118 56-135 (554)
17 3nb3_A Outer membrane protein 48.8 78 0.0027 30.3 9.8 49 467-515 138-191 (346)
18 1qjp_A Outer membrane protein 32.9 2.1E+02 0.0071 23.6 9.7 49 467-515 117-170 (171)
19 2k0l_A Outer membrane protein 24.9 3.4E+02 0.012 23.5 9.8 49 467-515 139-192 (216)
No 1
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=100.00 E-value=9.5e-35 Score=312.88 Aligned_cols=398 Identities=11% Similarity=0.035 Sum_probs=276.3
Q ss_pred ccccccCCccEEEEEEEEECCCccchHHHHh---hcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCC
Q psy2168 24 AMLGHVMVAPARVDRVKVEGIGRTYDDIITD---SIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGP 100 (516)
Q Consensus 24 ~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r---~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~ 100 (516)
..|.+.+| +|++|+|+|+.++++.+|++ ++++.+ |++++. .++++..++|.+++ .+|++.+.|.
T Consensus 127 l~i~v~eG---~i~~I~i~G~~~~~~~~l~~~~~~~~~~~---G~~~n~--~~le~~~~~L~~~~--~~v~~~~~p~--- 193 (554)
T 2qdz_A 127 LKLKVEWG---RIKGWLIDGKPLEGTRDRMMVFSAMPGWQ---DKVLNV--FDIDQAIYNINNGG--KTGNITIVPA--- 193 (554)
T ss_dssp EEEEEECC---EEEEEEETTEECCSHHHHHHHHHHSTTCT---TCBCCH--HHHHHHHHHHCSSS--EEEEEEEEEC---
T ss_pred EEEEEEeE---EEEEEEECCCCccchhhhhhhhhhccccC---CCcCCH--HHHHHHHHHHhcCc--hhceEEEecC---
Confidence 44455555 48999999999999999999 887544 888863 33457999999998 7788887653
Q ss_pred CCCCCCcEEEEEEEEecceeeEEEEEee-c--C-cce--EEEEEEeeeccCCCceEEEEEEEeeE-------EeEEEEEE
Q psy2168 101 DATPEHGYEITFRVKELKRYRAGVTTSI-G--N-NEG--SVVVWGKMPNLYGRGELAEMSYVYGT-------KSLVYNLT 167 (516)
Q Consensus 101 ~~~~~~~v~l~i~v~E~~~~~~~~~~~~-g--~-~~g--~~~l~~~~~Nl~G~g~~l~~~~~~~~-------~~~~~~~~ 167 (516)
..+ +.++|+|.|+|++++.+.++++. + + ..| .+.+.+.+.|++|.|+++++++..+. ..+.++++
T Consensus 194 -~~~-g~~~l~v~v~e~~~~~~~~g~~~~g~g~~~tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~ 271 (554)
T 2qdz_A 194 -DEY-GYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLM 271 (554)
T ss_dssp -SST-TEEEEEEEEEECCSCEEEEEEEECSCSSSCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEE
T ss_pred -CCC-CeeEEEEEEeeCCcEEEEEEEcCCCCCCCCccceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEE
Confidence 456 89999999999888888888774 3 2 223 68999999999999999999999986 55689999
Q ss_pred EeccccCCCCceEEEEEEEeecccC------cccceeeeeeEEEEEeEeec---CeEEEEEEEEEEEEecCCCCCChHHH
Q psy2168 168 LRKPFFGPIDSMLSGSLLRQVNEMP------ASSCKLLEQGLILDYAILFP---TIKNSIEWNGLIREIQPASRGTPFAI 238 (516)
Q Consensus 168 ~~~P~~~~~~~~~~~~~~~~~~~~~------~~~y~~~~~g~~~~l~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (516)
|..|+.. +.+.+.+.+...+.. ...|..++.++++.+++++. ..++++++++.+++......+.. +
T Consensus 272 y~~P~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 346 (554)
T 2qdz_A 272 YSVPLGR---TRLDLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTR--L 346 (554)
T ss_dssp EEEEETT---EEEEEEEEEEEEECCCSSSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTS--C
T ss_pred EEEEEec---CeEEEEEEEeEEEEEccCCcceEEEEeeEEEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCcC--c
Confidence 9999863 456666655443211 12466777888999999984 46667777766666643111110 0
Q ss_pred HHhhCCCccceeEEEEEEecCCCCCCCCCcceeeeeeeeecCCCCcccccccccceeeeceeecccceeeeeccccCCCC
Q psy2168 239 RESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKI 318 (516)
Q Consensus 239 ~~~~g~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~ 318 (516)
..+......+..++.|++++ |..+....+....+. .+.
T Consensus 347 --~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~G~------------------------------~~~------ 384 (554)
T 2qdz_A 347 --DVSSKHYSDVTVGMQYSTQR----GANAYFGDLSFTRGV------------------------------GVN------ 384 (554)
T ss_dssp --CCEEEEEEEEEEEEEEEEEC----SSEEEEEEEEEEECC------------------------------CC-------
T ss_pred --cccCceEEEEEEEEEEEEEe----cCeEEEEEEEEEecC------------------------------CCC------
Confidence 01222345677788888764 222222222221110 000
Q ss_pred CCCCCccccceeeeeccCCcceeeeEEEEEEEEEec---CCCcEEEEEeeeeeeecCCCCCccCcccceeeCCCCCccCC
Q psy2168 319 LPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQVNYPL---GPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGF 395 (516)
Q Consensus 319 ~p~~G~~~~~~~~~~~~g~d~~f~k~~~~~~~~~~l---~~~~~l~~~~~~G~i~~~~~~~~lp~~e~f~lGG~~~vRGy 395 (516)
+....+....+++.+|.|+.+++++|+|+ ..++++.+++.+++.. +.+|.+|+|++||.++||||
T Consensus 385 -------a~~~~~~~~~~~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-----~~lp~~e~f~lGG~~sVRGy 452 (554)
T 2qdz_A 385 -------NGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLGFQYSR-----QQLLNSYQITVGDEYTVRGY 452 (554)
T ss_dssp --------------------CCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEECS-----SCSSSSEECCSCCCCCCTTC
T ss_pred -------CCcCcccccCCCcceEEEEEEEEEEEEEccccCCCEEEEEEEEeEecC-----CCCCcHHhEecCCCCeECCc
Confidence 00000001124678999999999999996 4567777777776642 46999999999999999999
Q ss_pred CCCCCCcCCCCCCCcceeEEEeeEEEEeeCCCCCCCCCCCCCCceEEEEEecccccccCchhhhhhhhhcccCeeeeeeE
Q psy2168 396 AHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGI 475 (516)
Q Consensus 396 ~~~~igp~~~~~~~gG~~~~~~~~El~~~l~~~~~~~~~~~~~l~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~s~G~ 475 (516)
++++++| |+.++.+++||+||+. .|. +.....+.+++|+|+|++|+.... ....++.|+|+
T Consensus 453 ~~~~l~p--------Gd~g~~~~~El~~~~~--~~~-~~~~~~~~~~~F~D~G~v~~~~~~--------~~~~~~~g~G~ 513 (554)
T 2qdz_A 453 NLRTSQS--------GDSGVYLSNTLTVPVQ--FSL-LGKQASVAPFVGADVGALKSNHPD--------ARTIRMAGLAA 513 (554)
T ss_dssp CCCCSCC--------SSCSSCCEESEEEEEE--EEE-EECCSSCEEEEEEEEEEEECSSSS--------CCEEEEEEEEE
T ss_pred ccccccC--------CCccEEEEEEEEeecc--ccc-cCccceEEEEEEEEEEEEecCCCC--------CCCCEEEEEEE
Confidence 9876654 6777889999999972 110 000026899999999999986531 13457899999
Q ss_pred EEEEeecceeEEEEEEEeecccc-CCCCccccE-EEEeeecC
Q psy2168 476 GLAIRFAGLARVEINYCFPYSYQ-RDDSVVPGM-QFGFGITF 515 (516)
Q Consensus 476 Gir~~~t~~g~i~l~~a~~l~~~-~~d~~~~~~-~f~ig~~F 515 (516)
|+||. +|.+|+++++|+|+.+. +++....+| ||+||..|
T Consensus 514 Glr~~-~~~~~l~l~~a~pl~~~~~~~~~~~~~~~fsig~~F 554 (554)
T 2qdz_A 514 GVRFD-LPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF 554 (554)
T ss_dssp EEEEC-CSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEEC
T ss_pred EEEEe-cCcEEEEEEEEeeccCCcccccCCceEEEEEEEEEC
Confidence 99996 79999999999999876 443122349 99999987
No 2
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=98.76 E-value=1e-08 Score=93.67 Aligned_cols=84 Identities=19% Similarity=0.341 Sum_probs=70.5
Q ss_pred ccccccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCC
Q psy2168 24 AMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDAT 103 (516)
Q Consensus 24 ~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~ 103 (516)
..+...+|++++|++|.|.|+.++++++|+|++++.+ |++|+. .++++++++|.++|+|++|++.+.+.+ ..
T Consensus 106 l~~~V~eG~~~~i~~I~i~Gn~~~~~~~i~r~l~~~~---G~~~n~--~~l~~~~~~L~~lg~F~~V~i~~~~~~---~~ 177 (189)
T 3q6b_A 106 LRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQME---GAWLGS--DLVDQGKERLNRLGFFETVDTDTQRVP---GS 177 (189)
T ss_dssp EEEEEECCCCCEEEEEEEESCSSSCHHHHHTTCCSCT---TSBCCH--HHHHHHHHHHHHHSCCSEEEEEEEEET---TE
T ss_pred EEEEECCCCeEEEEEEEEECCccCCHHHHHhhccCCC---CCccCH--HHHHHHHHHHHhCCCceeeEEEeccCC---CC
Confidence 3457789999999999999999999999999998655 998864 233579999999999999999977532 24
Q ss_pred CCCcEEEEEEEEe
Q psy2168 104 PEHGYEITFRVKE 116 (516)
Q Consensus 104 ~~~~v~l~i~v~E 116 (516)
+ +.++|.|.|+|
T Consensus 178 ~-~~vdv~v~V~E 189 (189)
T 3q6b_A 178 P-DQVDVVYKVKE 189 (189)
T ss_dssp E-EEEEEEEEEEC
T ss_pred C-CEEEEEEEEEC
Confidence 5 78999999987
No 3
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=98.11 E-value=3.4e-06 Score=79.34 Aligned_cols=87 Identities=18% Similarity=0.223 Sum_probs=71.4
Q ss_pred ccccccccCCc--cEEEEEEEEECCC---ccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEec
Q psy2168 22 NDAMLGHVMVA--PARVDRVKVEGIG---RTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDA 96 (516)
Q Consensus 22 ~~~~~~~~~~~--~~~i~~I~v~G~~---~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~ 96 (516)
+...+...+|+ +++|++|.|+|+. ++++.+|++++.+.+ |++|+. .++++.+++|.++|+|++|++.+.+
T Consensus 143 ~~l~~~v~eG~~~~i~i~~i~~~G~~~~~~~~~~~i~~~~~~~~---G~~~~~--~~l~~~~~~L~~~g~f~~v~i~~~~ 217 (235)
T 2x8x_X 143 GVVTLQVAEGVVEQVTYRFLNKEGEPTKQRTRDFVISREMDTQP---GVVLNQ--KTVQADLRRLFELGLFEDVQVALEP 217 (235)
T ss_dssp SEEEEEEECCBEEEEEEEEBCTTSCBCCCCSCHHHHHTTCSCCT---TSBCCH--HHHHHHHHHHHHHTCEEEEEEEEEE
T ss_pred cEEEEEEEeCceEEEEEEEecccCCcCCCccchhheeeeeecCC---CCccCH--HHHHHHHHHHHhcCCcccceEEecc
Confidence 36777788999 6788899999998 999999999998655 888863 2335799999999999999998765
Q ss_pred CCCCCCCCCCcEEEEEEEEecc
Q psy2168 97 SKGPDATPEHGYEITFRVKELK 118 (516)
Q Consensus 97 ~~~~~~~~~~~v~l~i~v~E~~ 118 (516)
. ..+ +.++|.|.|+|++
T Consensus 218 ~----~~~-~~~~l~i~v~e~~ 234 (235)
T 2x8x_X 218 G----QNP-RRVNLILNIKERN 234 (235)
T ss_dssp C----SST-TSEEEEEEEEECC
T ss_pred C----CCC-CeeEEEEEEEeCC
Confidence 2 345 7899999999975
No 4
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=97.94 E-value=1.6e-05 Score=79.10 Aligned_cols=89 Identities=11% Similarity=0.127 Sum_probs=68.7
Q ss_pred cccccccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhh----cCCc-ceeeEEEEecC
Q psy2168 23 DAMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLE----RLQC-FQQVQIEIDAS 97 (516)
Q Consensus 23 ~~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~----~~~~-f~~V~i~~~~~ 97 (516)
+..+...+|++++|++|.|.|+.++++.+|++.+++.+ |++|+.. ++.+..++|. ++|+ |.+|++.+.+.
T Consensus 239 ~v~i~v~eG~~~~i~~I~i~g~~~~~~~~l~~~~~~~~---G~~~~~~--~l~~~~~~l~~~~~~~Gy~f~~v~~~~~~~ 313 (335)
T 2qdf_A 239 YVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEP---GELYNGT--KVTKMEDDIKKLLGRYGYAYPRVQSMPEIN 313 (335)
T ss_dssp EEEEEEECCCCCEEEEEEEEEECTTCHHHHHHHTCCCT---TEECCHH--HHHHHHHHHHHHHHTTTBSSCEEEEEEEEE
T ss_pred EEEEEEccCCcEEEEEEEEEccccCChHHHHHhcCCCC---CCccCHH--HHHHHHHHHHHHHHhCCCCceEEEEeeEec
Confidence 45566789999999999999999999999999988655 8888531 1234556555 5697 88888876542
Q ss_pred CCCCCCCCCcEEEEEEEEecceee
Q psy2168 98 KGPDATPEHGYEITFRVKELKRYR 121 (516)
Q Consensus 98 ~~~~~~~~~~v~l~i~v~E~~~~~ 121 (516)
..+ +.++|.+.|+|++++.
T Consensus 314 ----~~~-~~vdv~i~v~e~~~~~ 332 (335)
T 2qdf_A 314 ----DAD-KTVKLRVNVDAGNRFY 332 (335)
T ss_dssp ----TTT-TEEEEEEEEECCCBCC
T ss_pred ----CCC-CEEEEEEEEeeCCeEE
Confidence 345 7899999999988654
No 5
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=97.84 E-value=2.3e-06 Score=84.44 Aligned_cols=86 Identities=21% Similarity=0.234 Sum_probs=7.4
Q ss_pred cccccccCC--ccEEEEEEEEE-------CC---CccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceee
Q psy2168 23 DAMLGHVMV--APARVDRVKVE-------GI---GRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQV 90 (516)
Q Consensus 23 ~~~~~~~~~--~~~~i~~I~v~-------G~---~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V 90 (516)
...+.+.+| .+++|+.|.++ |+ .++++.+|+|++++.+ |+.|+. .++.+++++|.++|+|++|
T Consensus 211 ~l~i~V~eG~i~~i~v~~i~~~Gn~~~~~Gn~i~~~t~~~vI~r~l~~~~---G~~yn~--~~l~~~~~~L~~lg~F~~V 285 (316)
T 3mc9_A 211 VVTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIITREVELKP---GQVFNR--NTVQKDLQRVFGTGLFEDV 285 (316)
T ss_dssp EEEEEEECCEEC--------------------------------------------------------------------
T ss_pred EEEEEEEcCccccEEEEEEeccccccccCCcccccccCHHHHHhhhccCC---CCcCCH--HHHHHHHHHHHcCCCccee
Confidence 466777789 78889888888 55 6899999999999655 888863 2335799999999999999
Q ss_pred EEEEecCCCCCCCCCCcEEEEEEEEecc
Q psy2168 91 QIEIDASKGPDATPEHGYEITFRVKELK 118 (516)
Q Consensus 91 ~i~~~~~~~~~~~~~~~v~l~i~v~E~~ 118 (516)
++.+.+. ..+ +.++|.|+|+|+.
T Consensus 286 ~v~~~p~----~~~-~~vdl~v~v~e~~ 308 (316)
T 3mc9_A 286 NVSLDPG----TDP-TKVNVVVNVVERS 308 (316)
T ss_dssp ----------------------------
T ss_pred eEEeecC----CCC-CeEEEEEEEEEcc
Confidence 9986642 456 8999999999974
No 6
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=97.52 E-value=1.1e-05 Score=82.28 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=10.3
Q ss_pred ccccccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEec
Q psy2168 24 AMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDA 96 (516)
Q Consensus 24 ~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~ 96 (516)
..+...+|++++|++|.|+|+.+|++++|+|++++.+ |++|+. .++.+++++|.++|+|++|++++.+
T Consensus 320 l~~~v~eG~~~~i~~I~i~Gn~~~~~~virr~~~~~~---G~~y~~--~~l~~~~~~L~~lg~F~~V~i~~~~ 387 (395)
T 3efc_A 320 LRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQME---GAWLGS--DLVDQGKERLNRLGFFETVDTDTQR 387 (395)
T ss_dssp EEEEEECCCCCCC------------------------------------------------------------
T ss_pred EEEEEEeCCeEEEEEEEEECCCcCChHHHhhhcccCC---CccCCH--HHHHHHHHHHHhCCCcceeeeeccC
Confidence 4556679999999999999999999999999999655 888864 2235799999999999999998654
No 7
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=97.26 E-value=0.00058 Score=67.09 Aligned_cols=79 Identities=20% Similarity=0.173 Sum_probs=64.2
Q ss_pred cCCccEEEEEEEEECC----CccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCCC
Q psy2168 29 VMVAPARVDRVKVEGI----GRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATP 104 (516)
Q Consensus 29 ~~~~~~~i~~I~v~G~----~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~~ 104 (516)
.+|++++|.+|+|+|+ ....++.|+..+.+.+ |+.++. .++++..++|+++|+|.+|.+.++. .+
T Consensus 57 ~Eg~~~~I~~I~i~Gn~~~~~~~~~~~l~~~l~~k~---G~~~~~--~~l~~di~~L~~~GyF~~V~v~~~~------~~ 125 (316)
T 3mc9_A 57 TTEPRVLVSEVLVRPQSGQLTPELETQVYNVIRTQP---GRTTTR--SQLQEDINAIFGTGFFSNVQASPED------TP 125 (316)
T ss_dssp -CCCCEEEEEEEEEESSSCCCHHHHHHHHHHCCCCT---TSEECH--HHHHHHHHHHHHTSCEEEEEEEEEE------ET
T ss_pred CCCCceEEEEEEEECCcccccccCHHHHHhhccCCC---CCccCH--HHHHHHHHHHHHCCCceEEEEEEec------CC
Confidence 6789999999999999 8889999999988654 888863 3345688899999999999988653 23
Q ss_pred CCcEEEEEEEEecce
Q psy2168 105 EHGYEITFRVKELKR 119 (516)
Q Consensus 105 ~~~v~l~i~v~E~~~ 119 (516)
+.+.|.|.|.|++.
T Consensus 126 -~~v~l~~~V~egp~ 139 (316)
T 3mc9_A 126 -LGVRVSFIVQPNPV 139 (316)
T ss_dssp -TEEEEEEEEEECCB
T ss_pred -CeEEEEEEEecCce
Confidence 67899999999863
No 8
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=97.11 E-value=0.001 Score=67.50 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=66.9
Q ss_pred cccccccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHH-HHHHH-HHHHHHhhhcCCc-ceeeEEEEecCCC
Q psy2168 23 DAMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFG-QLIFQ-CHEVRNQLERLQC-FQQVQIEIDASKG 99 (516)
Q Consensus 23 ~~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~-~~~~~-~~~~~~~L~~~~~-f~~V~i~~~~~~~ 99 (516)
+..+...+|++++|++|.|.|+..++++.|++.+.+.+ |++++ +.+.+ .+...+.+.+.|| |.+|...+.+.
T Consensus 238 ~v~i~V~eG~~y~i~~I~i~Gn~~~~~~~l~~~~~l~~---G~~y~~~~l~~~~~~l~~~~~~~GY~~~~v~~~~~~~-- 312 (395)
T 3efc_A 238 YVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEP---GELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEIN-- 312 (395)
T ss_dssp ECEEEEECCCCCEEEEECCBSCCTTCHHHHHHTCCCCS---SCBCCHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEE--
T ss_pred EEEEEEecCCCEEEEEEEEECCCCCCHHHHHHHhccCC---CCCcCHHHHHHHHHHHHHHHHhCCCCccEEEEeeEec--
Confidence 35567779999999999999999999999999988644 77774 22222 2345788888999 45666543322
Q ss_pred CCCCCCCcEEEEEEEEecceee
Q psy2168 100 PDATPEHGYEITFRVKELKRYR 121 (516)
Q Consensus 100 ~~~~~~~~v~l~i~v~E~~~~~ 121 (516)
... +.++|.+.|.|.++..
T Consensus 313 --~~~-~~v~l~~~v~eG~~~~ 331 (395)
T 3efc_A 313 --DAD-KTVKLRVNVDAGNRFY 331 (395)
T ss_dssp --TTT-TEEEEEEEEECCCCCC
T ss_pred --CCC-CEEEEEEEEEeCCeEE
Confidence 234 7899999999987543
No 9
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=96.93 E-value=0.0023 Score=59.66 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=60.9
Q ss_pred CccEEEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCCCCCcEEE
Q psy2168 31 VAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYEI 110 (516)
Q Consensus 31 ~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~~~~~v~l 110 (516)
+++..|.+|.|+|++....+.|+..+.+.+ ++.+++ .++++..++|+++|+|.+|++.... .+ +.+.|
T Consensus 2 ~~~~~I~~I~i~G~~~~~~~~i~~~l~~~~---g~~~~~--~~~~~~~~~L~~~Gyf~~~~v~~~~------~~-~~~~l 69 (235)
T 2x8x_X 2 EPKVLIAEVVVEGATPELEQLVYQVISTRP---GSTTTR--TQLQQDTNAIFATGFFADVNAVPRD------TP-LGVRI 69 (235)
T ss_dssp CCCEEEEEEEEESCCHHHHHHHHHHCCCCT---TCEECH--HHHHHHHHHHHTTSCEEEEEEEEEE------ET-TEEEE
T ss_pred CCccEEEEEEEECCCccCHHHHHHhhccCC---CCccCH--HHHHHHHHHHHHCCCcEEEEEEEec------CC-CcEEE
Confidence 678899999999999999999999888544 887753 2335688899999999889887542 23 56889
Q ss_pred EEEEEecc
Q psy2168 111 TFRVKELK 118 (516)
Q Consensus 111 ~i~v~E~~ 118 (516)
.+.|+|++
T Consensus 70 ~~~v~eg~ 77 (235)
T 2x8x_X 70 TFVVRPYP 77 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 99999986
No 10
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=96.35 E-value=0.018 Score=51.82 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=56.0
Q ss_pred ccccccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHH--HHHHHHHHHHHhhhcCCcc-eeeEEEEecCCCC
Q psy2168 24 AMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFG--QLIFQCHEVRNQLERLQCF-QQVQIEIDASKGP 100 (516)
Q Consensus 24 ~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~~f-~~V~i~~~~~~~~ 100 (516)
.+-...++++++|++|.|+|+...+++.|++.+.+. .|+.++ .+....++..+.+.+.||+ .+|...+...
T Consensus 25 ~~~~~~~~~~y~i~~I~i~G~~~~~~~~L~~~~~~~---~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d--- 98 (189)
T 3q6b_A 25 SMTGGQQMGRYKLSGVEVSGNLAGHSAEIEQLTKIE---PGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEIN--- 98 (189)
T ss_dssp ----------CEEEEEEEEEECTTCHHHHHHHTCCC---TTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEE---
T ss_pred hhCCCCCCCCEEEEEEEEECCCcCCHHHHHHhhCCC---CCCeeCHHHHHHHHHHHHHHHHhCCCceEEeeEEEEec---
Confidence 334456788999999999999988889999887753 377663 2222235667777788996 4555532221
Q ss_pred CCCCCCcEEEEEEEEecceee
Q psy2168 101 DATPEHGYEITFRVKELKRYR 121 (516)
Q Consensus 101 ~~~~~~~v~l~i~v~E~~~~~ 121 (516)
... +.++|.+.|.|.+++.
T Consensus 99 -~~~-~~v~l~~~V~eG~~~~ 117 (189)
T 3q6b_A 99 -DAD-KTVKLRVNVDAGNRFY 117 (189)
T ss_dssp -TTT-TEEEEEEEEECCCCCE
T ss_pred -CCC-CEEEEEEEECCCCeEE
Confidence 234 6789999999987543
No 11
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=95.65 E-value=0.033 Score=54.76 Aligned_cols=91 Identities=11% Similarity=0.159 Sum_probs=61.0
Q ss_pred cccccccCCccEEEEEEEEECCCccchHHHHhhccccc-----------ccccccHHHHHHHHHHHHHhhhcCCccee-e
Q psy2168 23 DAMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTE-----------IFKSSTFGQLIFQCHEVRNQLERLQCFQQ-V 90 (516)
Q Consensus 23 ~~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~-----------~~~~~~~~~~~~~~~~~~~~L~~~~~f~~-V 90 (516)
...+...+|++++|++|.|+|+...++..|++.+.+.+ .++.+.+.+. .+...+.+.+.||+.- |
T Consensus 148 ~v~~~i~eG~~~~i~~I~~~G~~~~~~~~l~~~~~~~~g~~~~~~~~g~~~~~~~l~~~---~~~l~~~y~~~GY~~~~v 224 (335)
T 2qdf_A 148 DLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGD---LETLRSYYLDRGYARFNI 224 (335)
T ss_dssp EEEEEEECCCBCEEEEEEEESCCSSCHHHHHGGGSCC--------------CCSCHHHH---HHHHHHHHHTTTCTTCEE
T ss_pred EEEEEEecCCEEEEEEEEEECCccCCHHHHHHHhccCCCccccccccCCeeCHHHHHHH---HHHHHHHHHHCCCeEEEE
Confidence 56677889999999999999999999999999886522 2333333322 2346667777888742 2
Q ss_pred EE-EEecCCCCCCCCCCcEEEEEEEEecceee
Q psy2168 91 QI-EIDASKGPDATPEHGYEITFRVKELKRYR 121 (516)
Q Consensus 91 ~i-~~~~~~~~~~~~~~~v~l~i~v~E~~~~~ 121 (516)
.. .+.. +..+ +.++|.+.|.|.+++.
T Consensus 225 ~~~~~~~----~~~~-~~v~v~i~v~eG~~~~ 251 (335)
T 2qdf_A 225 DSTQVSL----TPDK-KGIYVTVNITEGDQYK 251 (335)
T ss_dssp EEEEEEE----CTTS-SEEEEEEEEECCCCCE
T ss_pred cCCEEEE----cCCC-CEEEEEEEEccCCcEE
Confidence 21 2221 1234 6789999999987644
No 12
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=79.34 E-value=3.9 Score=37.12 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=48.4
Q ss_pred EEEEEEECCC-ccchHHHHhhc-ccccccccccHHHHHHHHHHHHHhhh-cCCcceeeEEEEecCCCCCCCCCCcEEEEE
Q psy2168 36 VDRVKVEGIG-RTYDDIITDSI-KQTEIFKSSTFGQLIFQCHEVRNQLE-RLQCFQQVQIEIDASKGPDATPEHGYEITF 112 (516)
Q Consensus 36 i~~I~v~G~~-~t~~~vI~r~l-~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~f~~V~i~~~~~~~~~~~~~~~v~l~i 112 (516)
|.+|.|+|+. +++.+.|+..+ .+ ..+..+-. ...+..+++|. ++.+.++|.|.-. -| + .|.|
T Consensus 1 v~~V~V~G~~~~~s~~~I~~~~~~~---~~~~~~~~--vd~~~i~~~l~~~~P~V~~a~V~r~-------~P-~--~l~I 65 (220)
T 2vh1_A 1 MSKLVLTGERHYTRNDDIRQSILAL---GEPGTFMT--QDVNIIQTQIEQRLPWIKQVSVRKQ-------WP-D--ELKI 65 (220)
T ss_dssp -CEEEEESCCSSCCHHHHHHHHHTT---SCTTCGGG--SCHHHHHHHHHHHCTTEEEEEEEEE-------TT-T--EEEE
T ss_pred CcEEEEeCCCccCCHHHHHHHHhhc---cCCCCeEE--ECHHHHHHHHHhcCCCEEEEEEEEe-------CC-C--ceEE
Confidence 5689999998 68888888887 43 22333311 11145889999 9999999999843 23 3 4789
Q ss_pred EEEecce
Q psy2168 113 RVKELKR 119 (516)
Q Consensus 113 ~v~E~~~ 119 (516)
.|+|+..
T Consensus 66 ~V~Er~p 72 (220)
T 2vh1_A 66 HLVEYVP 72 (220)
T ss_dssp EEEECCE
T ss_pred EEEEecc
Confidence 9999864
No 13
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=79.12 E-value=2.9 Score=39.12 Aligned_cols=74 Identities=23% Similarity=0.277 Sum_probs=50.0
Q ss_pred CccEEEEEEEEECCC-ccchHHHHhhc-ccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCCCCCcE
Q psy2168 31 VAPARVDRVKVEGIG-RTYDDIITDSI-KQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGY 108 (516)
Q Consensus 31 ~~~~~i~~I~v~G~~-~t~~~vI~r~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~~~~~v 108 (516)
.+...|.+|.|+|+. .++++.|+..+ .+ ..+..+-. ...++.+++|.++.+.++|.|+-. -| +
T Consensus 23 sp~f~v~~I~V~G~~~~vs~~eI~~~~~~~---~~g~~~~~--vd~~~i~~~l~~~PwV~~a~V~r~-------~P-~-- 87 (255)
T 2vh2_A 23 SSRLPLSKLVVTGERHYTTNDDIRQAILSL---GAPGTFMT--QDVNIIQQQIERLPWIQQASVRKQ-------WP-D-- 87 (255)
T ss_dssp ----CCCEEEEESCCSSCCHHHHHHHHTTS---CCSSTTTS--CHHHHHHHHTSCCSSEEEEEEEEE-------TT-T--
T ss_pred CCCceEeEEEEECCCcccCHHHHHHHHhcc---cCCCccEE--EcHHHHHHHHHcCCCeeEEEEEEE-------CC-C--
Confidence 345778999999998 58888888877 43 22333311 111458899999999999999843 23 3
Q ss_pred EEEEEEEecce
Q psy2168 109 EITFRVKELKR 119 (516)
Q Consensus 109 ~l~i~v~E~~~ 119 (516)
.|.|.|+|+..
T Consensus 88 ~L~I~V~Er~P 98 (255)
T 2vh2_A 88 ELKIHLVEYVP 98 (255)
T ss_dssp EEEEEEEECCC
T ss_pred eEEEEEEEeee
Confidence 47889999864
No 14
>3qra_A AIL, attachment invasion locus protein; beta-barrel protein, attachment and invasion virulence, LAMI heparin, cell invasion; HET: C8E; 1.80A {Yersinia pestis} SCOP: f.4.1.0 PDB: 3qrc_A*
Probab=59.46 E-value=25 Score=29.81 Aligned_cols=46 Identities=24% Similarity=0.409 Sum_probs=32.2
Q ss_pred cCeeeeeeEEEEEeecceeEEEEEEEeeccccCCCCccccEEEEeeecC
Q psy2168 467 EELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 467 ~~~~~s~G~Gir~~~t~~g~i~l~~a~~l~~~~~d~~~~~~~f~ig~~F 515 (516)
......+|+|+.+.+++-..++++|-+. .. +|.....|.++|++.|
T Consensus 112 ~~~g~~~GaGvey~~~~n~~~~~eY~y~-~~--~d~~~~~~~vGv~YrF 157 (157)
T 3qra_A 112 SKTSLAYGAGLQFNPHPNFVIDASYEYS-KL--DDVKVGTWMLGAGYRF 157 (157)
T ss_dssp EEEEEEEEEEEEECSSTTEEEEEEEEEE-EE--TTEEEEEEEEEEEEEC
T ss_pred cceeeEEEEEEEEEecCCEEEEEEEEEE-ec--CCCcccEEEEEEEeEC
Confidence 3456889999999888888888888663 11 1222234888888877
No 15
>2lhf_A Outer membrane protein H1; beta-barrel; NMR {Pseudomonas aeruginosa}
Probab=57.28 E-value=56 Score=28.36 Aligned_cols=53 Identities=15% Similarity=0.040 Sum_probs=32.2
Q ss_pred ceEEEEEecccccccCchhhhhhhhhcccCeeeeeeEEEEEeecceeEEEEEEEe
Q psy2168 439 FRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINYCF 493 (516)
Q Consensus 439 l~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~s~G~Gir~~~t~~g~i~l~~a~ 493 (516)
+.+++-+-+|-.+...+.... .......+..++++|++|++++-..+++.|-+
T Consensus 90 ~~~y~Ga~~G~~~~~~~~~~~--~~~~~~~fa~g~~aG~~Y~~t~~~~l~~~YRy 142 (179)
T 2lhf_A 90 TKLFGGATLGLVKLEQDGKGF--KRDSDVGYAAGLQAGILQELSKNASIEGGYRY 142 (179)
T ss_dssp CBEEEEEEEEEEEECCSCSSS--CCCCCCCEEEEEEEEEEEECSSSCEEEEEEEE
T ss_pred EEEEEEEEEeEEEEEcccccc--cccccccEEEEEeeEEEEEcCCCeEEEEEEEE
Confidence 666555566666544321000 00123467799999999999887777776654
No 16
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=55.05 E-value=11 Score=39.24 Aligned_cols=77 Identities=8% Similarity=-0.066 Sum_probs=50.3
Q ss_pred CccEEEEEEEEECCCccchHHHHhhccc--ccccccccHHHHHHHHHHHHHhhhcCCcc-eeeEEEEecCCCCCCCCCCc
Q psy2168 31 VAPARVDRVKVEGIGRTYDDIITDSIKQ--TEIFKSSTFGQLIFQCHEVRNQLERLQCF-QQVQIEIDASKGPDATPEHG 107 (516)
Q Consensus 31 ~~~~~i~~I~v~G~~~t~~~vI~r~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~f-~~V~i~~~~~~~~~~~~~~~ 107 (516)
+++++|.+|+|+|++..+++.|++.+.. +..++.+.+++++ ++..+.+.+.||+ .+|.+. +.. ... +
T Consensus 56 g~~~~i~~I~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~---~~i~~~y~~~GY~~a~v~~~--~~~---~~~-g- 125 (554)
T 2qdz_A 56 GHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLV---KALSAALYDRGYATSIVTFV--PPG---VVD-G- 125 (554)
T ss_dssp CCSSSSCCEEEECCSSSCCCSCSTTSTTSSSSCBCSTTHHHHH---HHHHHHHHHTTCTTCEEEEE--EEE---EET-T-
T ss_pred CceEEEEEEEEECCccCCHHHHHHHhHhhcCCCCCHHHHHHHH---HHHHHHHHHcCceeeeEEcc--ccc---ccC-C-
Confidence 8899999999999998888888777663 2233344444322 4577777888996 344442 110 112 2
Q ss_pred EEEEEEEEecc
Q psy2168 108 YEITFRVKELK 118 (516)
Q Consensus 108 v~l~i~v~E~~ 118 (516)
.|.+.|.|.+
T Consensus 126 -~l~i~v~eG~ 135 (554)
T 2qdz_A 126 -VLKLKVEWGR 135 (554)
T ss_dssp -EEEEEEECCE
T ss_pred -EEEEEEEeEE
Confidence 4888888976
No 17
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=48.84 E-value=78 Score=30.27 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=30.3
Q ss_pred cCeeeeeeEEEEEeecceeEEEEEEEeeccccCC-----CCccccEEEEeeecC
Q psy2168 467 EELRISYGIGLAIRFAGLARVEINYCFPYSYQRD-----DSVVPGMQFGFGITF 515 (516)
Q Consensus 467 ~~~~~s~G~Gir~~~t~~g~i~l~~a~~l~~~~~-----d~~~~~~~f~ig~~F 515 (516)
..+...+|+|+.|.+++-..++++|-+-...... +.....+.+++++.|
T Consensus 138 ~~~~~~~G~Gv~y~lt~~~~l~~ey~y~~~~~~~~~~~~~~~~~~~~lGl~Y~F 191 (346)
T 3nb3_A 138 TGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRF 191 (346)
T ss_dssp EEEEEEEEEEEEEEEETTEEEEEEEEEEC--------------CEEEEEEEEEC
T ss_pred CccceeEEeEEEEEeCCCeeEEEEEEEEeccCccccccccCcccEEEEEEEEEc
Confidence 4466889999999888888888888763211110 111223778887776
No 18
>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} SCOP: f.4.1.1 PDB: 1bxw_A* 1g90_A 2ge4_A
Probab=32.91 E-value=2.1e+02 Score=23.62 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=30.0
Q ss_pred cCeeeeeeEEEEEeecceeEEEEEEEeeccccCC-----CCccccEEEEeeecC
Q psy2168 467 EELRISYGIGLAIRFAGLARVEINYCFPYSYQRD-----DSVVPGMQFGFGITF 515 (516)
Q Consensus 467 ~~~~~s~G~Gir~~~t~~g~i~l~~a~~l~~~~~-----d~~~~~~~f~ig~~F 515 (516)
..+...+|+|+.|.+++-..++++|-+--..... +.....+.++|++.|
T Consensus 117 ~~~~~~~G~G~~y~~~~~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~Gl~Y~F 170 (171)
T 1qjp_A 117 TGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRF 170 (171)
T ss_dssp EEEEEEEEEEEEEEEETTEEEEEEEEEEC--------------CEEEEEEEEEC
T ss_pred CccceEEEeeEEEEECcceEEEEEEEEEeccCCccccccccCCceEEEEEEEEC
Confidence 3467889999999888888888888764211100 111223777777766
No 19
>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae}
Probab=24.89 E-value=3.4e+02 Score=23.51 Aligned_cols=49 Identities=8% Similarity=0.105 Sum_probs=31.2
Q ss_pred cCeeeeeeEEEEEeecceeEEEEEEEeeccccCC-----CCccccEEEEeeecC
Q psy2168 467 EELRISYGIGLAIRFAGLARVEINYCFPYSYQRD-----DSVVPGMQFGFGITF 515 (516)
Q Consensus 467 ~~~~~s~G~Gir~~~t~~g~i~l~~a~~l~~~~~-----d~~~~~~~f~ig~~F 515 (516)
..+...+|+|+.|.+++-..++++|-+--..... +.....+.++|++.|
T Consensus 139 ~~~g~~~G~G~~y~lt~~~~l~~ey~y~~~~~~~~~~~~~~~~~~~~vGl~Y~F 192 (216)
T 2k0l_A 139 TGVSPVFAGGVEWAVTRDIATRLEYQWVNNIGDAGTVGTRPDNGMLSLGVSYRF 192 (216)
T ss_dssp EEEEEEEEEEEEEECSSSCEEEEEESSCSSCCCCSCCCCSSCSCCCEEEEEEEC
T ss_pred CccceEEEEEEEEecCCCeeEEEEEEEEeccCcccccccccCCcEEEEEEEEEC
Confidence 3467889999999988988888888753211100 111122677777766
Done!