Query psy2168
Match_columns 516
No_of_seqs 122 out of 1330
Neff 8.8
Searched_HMMs 13730
Date Fri Aug 16 18:03:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2168.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2168hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qj8a_ f.4.1.1 (A:) Outer mem 65.6 6.9 0.0005 30.8 6.8 46 467-515 103-148 (148)
2 d1qjpa_ f.4.1.1 (A:) Outer mem 57.4 25 0.0018 27.6 9.2 68 415-494 77-144 (171)
3 d1p4ta_ f.4.1.1 (A:) Outer mem 52.4 33 0.0024 26.5 8.9 29 466-494 103-131 (155)
4 d1kwga1 b.71.1.1 (A:591-644) A 7.5 2.4E+02 0.018 17.5 3.8 36 353-388 3-41 (54)
5 d1t16a_ f.4.3.4 (A:) Long-chai 6.6 6.4E+02 0.047 21.3 8.5 50 438-493 340-389 (427)
6 d1g6pa_ b.40.4.5 (A:) Major co 6.2 2.6E+02 0.019 17.8 3.7 18 4-21 27-44 (66)
7 d2ve8a1 a.4.5.67 (A:745-811) D 4.1 3.6E+02 0.026 17.4 3.1 35 45-90 17-51 (67)
8 d1xoya_ b.18.1.26 (A:) Hypothe 3.9 78 0.0057 24.9 -0.6 40 14-53 49-89 (161)
9 d2pora_ f.4.3.1 (A:) Porin {Rh 3.8 8.3E+02 0.061 19.0 6.7 42 470-515 260-301 (301)
10 d2gcxa1 b.34.1.2 (A:1-75) Ferr 3.7 5.6E+02 0.041 16.5 4.5 20 77-96 22-41 (75)
No 1
>d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]}
Probab=65.59 E-value=6.9 Score=30.81 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=32.3
Q ss_pred cCeeeeeeEEEEEeecceeEEEEEEEeeccccCCCCccccEEEEeeecC
Q psy2168 467 EELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 467 ~~~~~s~G~Gir~~~t~~g~i~l~~a~~l~~~~~d~~~~~~~f~ig~~F 515 (516)
..+-..+|+|+.+.+++-..++++|-+-- .++.....|.+++++.|
T Consensus 103 ~~~g~~~G~Gvey~l~~n~~~~~eY~~~~---~~~~d~~~~~~Gv~YrF 148 (148)
T d1qj8a_ 103 SDYGFSYGAGLQFNPMENVALDFSYEQSR---IRSVDVGTWIAGVGYRF 148 (148)
T ss_dssp EEEEEEEEEEEEECSSTTEEEEEEEEEEE---ETTEEEEEEEEEEEEEC
T ss_pred cccceeEeeeEEEEecCCEEEEEEEEEEe---CCCceeeeEEEEEEEEC
Confidence 34568899999998888888898886531 12222233888888887
No 2
>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=57.39 E-value=25 Score=27.59 Aligned_cols=68 Identities=7% Similarity=0.043 Sum_probs=39.4
Q ss_pred EEeeEEEEeeCCCCCCCCCCCCCCceEEEEEecccccccCchhhhhhhhhcccCeeeeeeEEEEEeecceeEEEEEEEee
Q psy2168 415 WQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINYCFP 494 (516)
Q Consensus 415 ~~~~~El~~~l~~~~~~~~~~~~~l~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~s~G~Gir~~~t~~g~i~l~~a~~ 494 (516)
+.+.+.+.|++. . .+.+++.+-++.......... ........+...+|+|+.|.+++-..++++|-+-
T Consensus 77 ~~l~~~~~~~~~---~-------~~~~y~~~G~~~~~~~~~~~~--~~~~~~~~~~~~~G~G~~y~i~~~~~l~~ey~~~ 144 (171)
T d1qjpa_ 77 VQLTAKLGYPIT---D-------DLDIYTRLGGMVWRADTYSNV--YGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWT 144 (171)
T ss_dssp EEEEEEEEEESS---S-------SEEEEEEEEEEEEEEEEECSS--SCEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEecC---C-------ceeEEEEeeeEEEEEEeeccc--ccccccCccceEEEeEEEEEeCCCEEEEEEEEEE
Confidence 445566667663 2 466666655554332211100 0001233456889999999988988888888653
No 3
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}
Probab=52.40 E-value=33 Score=26.53 Aligned_cols=29 Identities=7% Similarity=0.186 Sum_probs=23.5
Q ss_pred ccCeeeeeeEEEEEeecceeEEEEEEEee
Q psy2168 466 GEELRISYGIGLAIRFAGLARVEINYCFP 494 (516)
Q Consensus 466 ~~~~~~s~G~Gir~~~t~~g~i~l~~a~~ 494 (516)
...+...+|+|+.|.+++-..++++|-+.
T Consensus 103 ~~~~~~~~g~G~~y~lt~n~~~~~eyry~ 131 (155)
T d1p4ta_ 103 QTSIGLGVLTGVSYAVTPNVDLDAGYRYN 131 (155)
T ss_dssp CCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CcceeeEEEEEEEEEecCCEEEEEEEEEE
Confidence 34467889999999999998998888763
No 4
>d1kwga1 b.71.1.1 (A:591-644) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}
Probab=7.48 E-value=2.4e+02 Score=17.46 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=24.7
Q ss_pred ecCCCcEEEEEeeeeeeecCCCCC---ccCcccceeeCC
Q psy2168 353 PLGPYITAQASLDAGLLGSFSQDK---TFTLCDRFFLGG 388 (516)
Q Consensus 353 ~l~~~~~l~~~~~~G~i~~~~~~~---~lp~~e~f~lGG 388 (516)
.|.+.+++.-+..+.+.+++++.. +.|....|.+|+
T Consensus 3 ~LPeglRvrrRG~l~fafNYg~~~~~i~~~~~a~fvlG~ 41 (54)
T d1kwga1 3 SLPEGLRLRRRGTWVFAFNYGPEAVEAPASEGARFLLGS 41 (54)
T ss_dssp CCCTTEEEEEETTEEEEEECSSSCEECCCCTTCEEEESC
T ss_pred ccCCceEEEEECCEEEEEecCCCcEEeeCCCCCEEEecc
Confidence 456677788888888888886521 234557788877
No 5
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=6.59 E-value=6.4e+02 Score=21.31 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=23.8
Q ss_pred CceEEEEEecccccccCchhhhhhhhhcccCeeeeeeEEEEEeecceeEEEEEEEe
Q psy2168 438 NFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINYCF 493 (516)
Q Consensus 438 ~l~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~s~G~Gir~~~t~~g~i~l~~a~ 493 (516)
.+++...+|-..+.+...+ ........+..++|+|+++ ++...|.+.|.+
T Consensus 340 ~lR~Gy~y~~~~~~~~~~~----~~~p~~~~~~~s~G~~~~~--~~~~~id~a~~y 389 (427)
T d1t16a_ 340 TFRTGIAFDDSPVPAQNRS----ISIPDQDRFWLSAGTTYAF--NKDASVDVGVSY 389 (427)
T ss_dssp EEEEEEEEECCSSCTTTCC----SSSCCCCEEEEEEEEEEES--SSSEEEEEEEEE
T ss_pred EEEEEEEEccCCCCccccc----ccccCCCCEEEEEEEEEEc--CCCeEEEEEEEE
Confidence 5788888876555443221 0001122344555555555 344444444443
No 6
>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima [TaxId: 2336]}
Probab=6.20 E-value=2.6e+02 Score=17.81 Aligned_cols=18 Identities=22% Similarity=0.339 Sum_probs=11.8
Q ss_pred ccccccCCCCCCCCCCCc
Q psy2168 4 VHAKEIPSQPYDELDSDP 21 (516)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (516)
+|..+|+..+|..+.+++
T Consensus 27 vH~s~l~~~g~~~l~~G~ 44 (66)
T d1g6pa_ 27 VHWSAIEMEGFKTLKEGQ 44 (66)
T ss_dssp BCSSSSCCSSCCCCCSSS
T ss_pred EEhHHhcccCCCcCCCCC
Confidence 677777777766665443
No 7
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.07 E-value=3.6e+02 Score=17.44 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=26.0
Q ss_pred CccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceee
Q psy2168 45 GRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQV 90 (516)
Q Consensus 45 ~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V 90 (516)
.+.+-+.|+|.++++- .++.+....|...|+....
T Consensus 17 ~kaS~S~lQR~l~IGY-----------nRAariid~LE~~GiVsp~ 51 (67)
T d2ve8a1 17 RRASISAVQRKLKIGY-----------NRAARMIEAMEMAGVVTPM 51 (67)
T ss_dssp CCCCHHHHHHHHTCCH-----------HHHHHHHHHHHHTTSBCCC
T ss_pred CcccHHHHHHHHhcch-----------HHHHHHHHHHHHCcCCCCC
Confidence 4678899999999732 2335688889999988753
No 8
>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.89 E-value=78 Score=24.91 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=28.9
Q ss_pred CCCCCCCcccccccccC-CccEEEEEEEEECCCccchHHHH
Q psy2168 14 YDELDSDPNDAMLGHVM-VAPARVDRVKVEGIGRTYDDIIT 53 (516)
Q Consensus 14 ~~~~~~~~~~~~~~~~~-~~~~~i~~I~v~G~~~t~~~vI~ 53 (516)
.+.+.+|.+++||..++ -+.++|..|.|.|.....|+.|+
T Consensus 49 ~~~l~SD~D~QLii~IpF~~~Vkl~si~i~~~~~~~Pk~ik 89 (161)
T d1xoya_ 49 GLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVK 89 (161)
T ss_dssp TCCEECSSCSSEEEEEEEEEEECEEEEEEECCTTTSEEEEE
T ss_pred CceEecCCChheEEEeecCCceEEEEEEEeCCCCCCCcEEE
Confidence 34577888888888763 35788999999988766555433
No 9
>d2pora_ f.4.3.1 (A:) Porin {Rhodobacter capsulatus [TaxId: 1061]}
Probab=3.79 E-value=8.3e+02 Score=18.99 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=26.9
Q ss_pred eeeeeEEEEEeecceeEEEEEEEeeccccCCCCccccEEEEeeecC
Q psy2168 470 RISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF 515 (516)
Q Consensus 470 ~~s~G~Gir~~~t~~g~i~l~~a~~l~~~~~d~~~~~~~f~ig~~F 515 (516)
...+++|+.+++++--.+.+.|+..-. |.......++|.+.|
T Consensus 260 ~~~~~lG~~Y~Lsk~t~ly~~y~~~~~----d~~~~~~~~G~~~~F 301 (301)
T d2pora_ 260 VTYYGLGASYDLGGGASIVGGIADNDL----PNSDMVADLGVKFKF 301 (301)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECS----SSCCCEEEEEEEEEC
T ss_pred eeEEEEEEEEECCCCEEEEEEEEEEec----CCCCeEEEEeeEEEC
Confidence 456889999988777777777766421 222222667776665
No 10
>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA {Klebsiella pneumoniae [TaxId: 573]}
Probab=3.68 E-value=5.6e+02 Score=16.53 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=17.5
Q ss_pred HHHhhhcCCcceeeEEEEec
Q psy2168 77 VRNQLERLQCFQQVQIEIDA 96 (516)
Q Consensus 77 ~~~~L~~~~~f~~V~i~~~~ 96 (516)
.++||..+|+...+.|++..
T Consensus 22 ~~~RL~~mGl~pG~~V~v~~ 41 (75)
T d2gcxa1 22 YRQKLLSLGMLPGSSFHVVR 41 (75)
T ss_dssp HHHHHTTTTCCSSEEEEECC
T ss_pred HHHHHHHcCCCCCCEEEEEE
Confidence 67999999999999999753
Done!