Query psy217
Match_columns 353
No_of_seqs 148 out of 997
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:04:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02332 membrane bound O-acyl 100.0 2.3E-82 5E-87 635.6 28.2 327 1-332 120-451 (465)
2 KOG2704|consensus 100.0 3.6E-81 7.8E-86 599.4 23.9 325 2-332 127-455 (480)
3 COG5202 Predicted membrane pro 100.0 4.2E-76 9E-81 546.2 16.4 337 2-340 127-473 (512)
4 KOG2705|consensus 100.0 2.2E-75 4.7E-80 538.6 16.6 337 1-340 119-455 (471)
5 KOG2706|consensus 100.0 3.6E-48 7.9E-53 354.3 4.4 318 1-332 106-461 (476)
6 PF03062 MBOAT: MBOAT, membran 100.0 2.6E-43 5.6E-48 337.9 11.2 250 1-263 18-288 (322)
7 KOG4312|consensus 100.0 7.2E-38 1.6E-42 289.2 23.1 298 1-332 130-448 (449)
8 COG1696 DltB Predicted membran 99.9 4E-24 8.7E-29 209.4 14.1 268 7-317 123-396 (425)
9 KOG3860|consensus 99.7 8.9E-17 1.9E-21 158.0 11.0 211 36-269 199-411 (494)
10 PLN03242 diacylglycerol o-acyl 98.9 1.8E-08 3.8E-13 98.8 11.4 53 184-236 297-350 (410)
11 PLN02401 diacylglycerol o-acyl 98.8 4.2E-08 9.1E-13 96.9 12.4 53 184-236 322-375 (446)
12 KOG0380|consensus 98.7 3.2E-08 6.9E-13 99.4 9.1 74 184-257 393-477 (523)
13 COG5056 ARE1 Acyl-CoA choleste 98.0 5.7E-05 1.2E-09 73.5 12.1 60 186-245 399-468 (512)
14 PF13813 MBOAT_2: Membrane bou 94.3 0.025 5.5E-07 43.4 1.8 53 185-237 9-66 (83)
15 PF09900 DUF2127: Predicted me 50.8 32 0.0007 29.1 4.9 35 226-262 82-116 (141)
16 PF04277 OAD_gamma: Oxaloaceta 36.9 62 0.0013 24.0 4.1 10 334-343 34-43 (79)
17 PF04689 S1FA: DNA binding pro 36.2 30 0.00065 25.1 2.0 21 324-344 30-50 (69)
18 PF09094 DUF1925: Domain of un 33.8 40 0.00088 25.7 2.5 22 229-250 49-70 (80)
19 PF11714 Inhibitor_I53: Thromb 31.3 45 0.00098 24.6 2.3 33 319-352 3-36 (78)
20 PF03832 WSK: WSK motif; Inte 21.8 56 0.0012 20.3 1.2 19 333-352 11-29 (31)
No 1
>PLN02332 membrane bound O-acyl transferase (MBOAT) family protein
Probab=100.00 E-value=2.3e-82 Score=635.56 Aligned_cols=327 Identities=24% Similarity=0.368 Sum_probs=300.4
Q ss_pred CCchhhHHHHHhHHhhhccCCCCCCCCChhhhhhhcccCCChhHhhHhhhcccccccCCccchHHHHHHHhCCCC-CCcc
Q psy217 1 MPECVLVMKLTGLAYNLYDGLNPQPGLSKHAQSVALTKMPCPFQVFAHSFFPLTFLIGPHFSMTRYQDFVAGKFT-EKES 79 (353)
Q Consensus 1 ~~~MiltlKl~s~a~~~~dg~~~~~~l~~~q~~~~l~~~Pslleyl~Y~f~f~~~l~GP~~~~~~y~~~i~~~~~-~~~~ 79 (353)
+||||+|||+||+|||++||.+++|+++++||+++|+++||++||+||+|||||+++||+++|+||+|+++++.. +.+.
T Consensus 120 g~qMVLtlKl~slAfd~~DG~~~~~~l~~~qk~~ai~~~PslLeyl~Y~f~f~~~l~GP~~~y~~Y~~~i~~~~~~~~~~ 199 (465)
T PLN02332 120 GALMVLTLKVISCAMNYQDGLLKEEGLREAQKKNRLIQLPSLIEYLGYCLCCGSHLAGPVFEFRDYLDWTEGKGLWDPNA 199 (465)
T ss_pred HHHHHHHHHHHHhhhhhhcccCChhhcChHHHHHHhhcCCCHHHHhHHhhcccccccCCcccHHHHHHHHcCcccccccc
Confidence 489999999999999999999888999999999999999999999999999999999999999999999999843 1212
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHhceeeccccccchhhhcchhHHHHHHHHHHHhhhhhhhhhhHhhhhHHHHHhC
Q psy217 80 VNGLPNCVKPAITRSLLGFTYLGIYQLVNIIYSDEYMVSDEYMYAPFWKRSFVLGVWGRSAFYKYISVWLLGEGAIILSG 159 (353)
Q Consensus 80 ~~~~p~~~~~~~~r~~~~l~~~~l~~~~~~~~p~~~~~~~~f~~~~~~~r~~~~~~~~~~~r~kyy~~W~lae~~~~~~G 159 (353)
+.++|++.++++++++.|+++++++.++++++|.+++.+|+|.+.|+++|++++++.+..+|+|||++|.++||+|+++|
T Consensus 200 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~p~~~~~~~~f~~~~~~~r~~~~~~~~~~~R~kYY~~W~lsE~~~i~~G 279 (465)
T PLN02332 200 KGKCPSPYGATLRALLQAAICMGLYLYLTPQFPLSRFTEPDYQEWGFWHRFGYQYMSGFTARWKYYFIWSISEAAIIISG 279 (465)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHhcCcccHHHcCCHhhhhccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 23578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCC--cccccccccCcCeeecccccchhhhcccchHHHHHhhcccccccccCcch--hhHHHHHHHHHHhhc
Q psy217 160 LSYNGVSDSGK--SLWNGCANVSLSVFEGATKFTHYVDSFNINTNHWVLENIYKRLKFLGNRL--ISQAAVLLFLAVWHG 235 (353)
Q Consensus 160 ~g~~G~~~~g~--~~~~~~~N~~~~~~e~~~s~~~~~~~WN~~~~~WL~~yVY~rl~~~g~~~--~~~~~Tf~~sA~WHG 235 (353)
+||+|.|++|+ ++||+++|+|++++|+++|++|+|++|||+||.|||+|||+|+++.|++. .++++||++||+|||
T Consensus 280 ~gy~g~~~~g~~~~~w~~~~Ni~~~~~E~~~s~~~~~~~WNi~~~~Wl~~YvY~rl~~~~~~~~~~~~~~t~~~sa~WHG 359 (465)
T PLN02332 280 LGFSGWDGEGKPKAKWDRAKNVDILGVELAKSAVQIPLVWNIQVSTWLRHYVYERLVPKGKKPGFFQLLATQTVSAVWHG 359 (465)
T ss_pred CCcCCCCCCCCCcCCcCceeecceeeEEccCCHHHHHHHccchHHHHHHHhEEeeCccCCcchhHHHHHHHHHHHHHHhc
Confidence 99999988764 48999999999999999999999999999999999999999999877663 689999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCcchhhhHHHHHHHHHHHHhhcccceeecchhHHHhhhcccc
Q psy217 236 FHSGYYATFFMEFIIIAFEKDFISVLEKNVTLLEFTRRPYISSLTYLGLKVYTFVFLGYCIGPFALLSYSKWIRVYTAYL 315 (353)
Q Consensus 236 ~~~gYyl~F~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~t~~~l~y~~~~F~ll~~~~~~~~~~s~y 315 (353)
+|||||++|+++++++.+||.++|..++.+. ..+..+.+++++++++|++.++|++++|.++++++++.+|+++|
T Consensus 360 ~~~gYyl~fl~~~l~~~~er~~~r~~~~~~~-----~~~~~~~l~~~~~~~~t~~~~~y~~~~F~lls~~~~~~~~~svy 434 (465)
T PLN02332 360 LYPGYILFFVQSALMIAGSRVIYRWQQAIPP-----SMALARNLLVFINFLYTVLVLNYSCVGFMLLSLDETLAAYGSVY 434 (465)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhccccc-----ccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999987764321 11234568899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy217 316 FLGHVLFMMWPLYKIAV 332 (353)
Q Consensus 316 f~~hi~~~~~~~~~~~~ 332 (353)
|+|||+.+++++++.++
T Consensus 435 f~~hi~~~~~~~~~~~~ 451 (465)
T PLN02332 435 YIGTIIPVVLILLGSVV 451 (465)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999888777555
No 2
>KOG2704|consensus
Probab=100.00 E-value=3.6e-81 Score=599.42 Aligned_cols=325 Identities=26% Similarity=0.409 Sum_probs=300.1
Q ss_pred CchhhHHHHHhHHhhhccCCC-CCCCCChhhhhhhcccCCChhHhhHhhhcccccccCCccchHHHHHHHhCCCCCCc--
Q psy217 2 PECVLVMKLTGLAYNLYDGLN-PQPGLSKHAQSVALTKMPCPFQVFAHSFFPLTFLIGPHFSMTRYQDFVAGKFTEKE-- 78 (353)
Q Consensus 2 ~~MiltlKl~s~a~~~~dg~~-~~~~l~~~q~~~~l~~~Pslleyl~Y~f~f~~~l~GP~~~~~~y~~~i~~~~~~~~-- 78 (353)
||||+|+|+|++|++++||.. ++++|++.||++++.++||++||+||+|+|+++++||.++|+||..++++++....
T Consensus 127 s~MV~v~Kit~la~~~~DG~~~~~~~L~s~QK~~al~~mPslLeflsY~f~f~s~l~GP~~~y~dYi~fle~k~~~~~~~ 206 (480)
T KOG2704|consen 127 SLMVLVLKITSLAISIYDGMLKEEKALTSAQKRRALREMPSLLEFLSYMFNFQSVLTGPVNDYKDYIEFLEGKMLPPTPT 206 (480)
T ss_pred HHHHHHHHHHHHHHhhhcccccChhhcchhhhhhHHHhCcHHHHHHHHHHhccceecccchhHHHHHHHhccccCCCCch
Confidence 799999999999999999985 55999999999999999999999999999999999999999999999999887533
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHhceeecccc-ccchhhhcchhHHHHHHHHHHHhhhhhhhhhhHhhhhHHHHH
Q psy217 79 SVNGLPNCVKPAITRSLLGFTYLGIYQLVNIIYSDEY-MVSDEYMYAPFWKRSFVLGVWGRSAFYKYISVWLLGEGAIIL 157 (353)
Q Consensus 79 ~~~~~p~~~~~~~~r~~~~l~~~~l~~~~~~~~p~~~-~~~~~f~~~~~~~r~~~~~~~~~~~r~kyy~~W~lae~~~~~ 157 (353)
++.+.|++.++++++..++++++.++..+.+.+|+.. ..++-+++.+++.|+.|.++.++..|+|||+||.+|||+|++
T Consensus 207 e~~~~Ps~~~a~~rk~~~~~i~~~lfl~l~~~~~~~~~~~~~~~~~~~~l~k~~Y~~~~~f~~R~KYYfAW~~Sdaicn~ 286 (480)
T KOG2704|consen 207 ERRKEPSPYTAAIRKVFQALICLALFLTLVKSLPPLYLLDEPFYAEYSFLLKFGYLYIAGFVARFKYYFAWTLSDAICNL 286 (480)
T ss_pred hhcCCCCCCcchHHHHHHHHHHHHHHHHHcccccccccccCcchhhhHHHHHHHHHHHHHHHHhhHHHhHhhhhcchhhh
Confidence 4567899999999999999999999998888544444 455557789999999999999999999999999999999999
Q ss_pred hCCCccccCCCCCcccccccccCcCeeecccccchhhhcccchHHHHHhhcccccccccCcchhhHHHHHHHHHHhhccc
Q psy217 158 SGLSYNGVSDSGKSLWNGCANVSLSVFEGATKFTHYVDSFNINTNHWVLENIYKRLKFLGNRLISQAAVLLFLAVWHGFH 237 (353)
Q Consensus 158 ~G~g~~G~~~~g~~~~~~~~N~~~~~~e~~~s~~~~~~~WN~~~~~WL~~yVY~rl~~~g~~~~~~~~Tf~~sA~WHG~~ 237 (353)
+|+||+|+||+|.++||+++|+|++++|+|+|++|+.++|||+|+.|||+|||+|+.++|+ ..++++||++||+|||++
T Consensus 287 sGfGf~G~dd~~~~kWdr~~Nvd~l~vE~A~s~k~~l~~WNi~T~~WLR~~vYeRv~k~gk-F~~tlaT~~~SAvWHG~~ 365 (480)
T KOG2704|consen 287 SGFGFNGYDDEGNAKWDRVSNVDILKVELATSVKEMLDNWNIQTNKWLRRVVYERVEKKGK-FYRTLATFTTSAVWHGLY 365 (480)
T ss_pred ccccccCCCcccccchhhhcccceeeehHhhhHHHHHhhcCccHHHHHHhheEEEcCCCCc-hhhhHHHHHHHHHHcccC
Confidence 9999999999999999999999999999999999999999999999999999999998875 689999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCcchhhhHHHHHHHHHHHHhhcccceeecchhHHHhhhcccchh
Q psy217 238 SGYYATFFMEFIIIAFEKDFISVLEKNVTLLEFTRRPYISSLTYLGLKVYTFVFLGYCIGPFALLSYSKWIRVYTAYLFL 317 (353)
Q Consensus 238 ~gYyl~F~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~t~~~l~y~~~~F~ll~~~~~~~~~~s~yf~ 317 (353)
||||++|++.++++.++|..||.+|+.. ..+...+.+|++++++.|.+.++|...||++|++.+++.+|+|+||+
T Consensus 366 pGYyltF~t~al~~~~ak~~rR~~r~~f-----l~~~~~~~~ydvi~~l~t~~~l~Y~~~~F~lL~l~~sl~v~~svYfi 440 (480)
T KOG2704|consen 366 PGYYLTFLTSALFTTAAKTGRRNFRHRF-----LKQSMLKLAYDVIGFLVTKLALGYLSVPFVLLSLKPSLTVWKSVYFI 440 (480)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccc-----hhHHHHHHHHHHHHHHHHHHHHHHHhheeeeehhhHHHHHHHHHHHH
Confidence 9999999999999999999999887632 22224457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy217 318 GHVLFMMWPLYKIAV 332 (353)
Q Consensus 318 ~hi~~~~~~~~~~~~ 332 (353)
|||++++.+++++..
T Consensus 441 ~HIi~~~~l~~~~~~ 455 (480)
T KOG2704|consen 441 GHIIALFVLLLLPKP 455 (480)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999988877
No 3
>COG5202 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4.2e-76 Score=546.17 Aligned_cols=337 Identities=25% Similarity=0.383 Sum_probs=306.6
Q ss_pred CchhhHHHHHhHHhhhccCCCCCCCCChhhhhhhcccCCChhHhhHhhhcccccccCCccchHHHHHHHhCCCC----CC
Q psy217 2 PECVLVMKLTGLAYNLYDGLNPQPGLSKHAQSVALTKMPCPFQVFAHSFFPLTFLIGPHFSMTRYQDFVAGKFT----EK 77 (353)
Q Consensus 2 ~~MiltlKl~s~a~~~~dg~~~~~~l~~~q~~~~l~~~Pslleyl~Y~f~f~~~l~GP~~~~~~y~~~i~~~~~----~~ 77 (353)
.||+||||++|+||+++||....++|+++||.+++...|+++++++|+||+||++.||.++|.||.++++-+++ +.
T Consensus 127 sqMvl~mKltsfaws~YdG~~~ssdlt~~qk~ra~r~~p~vl~fL~YifF~p~Ll~GPafdy~dfd~~lt~~mFr~l~e~ 206 (512)
T COG5202 127 SQMVLTMKLTSFAWSYYDGKEYSSDLTEHQKSRARRGTPTVLDFLSYIFFIPGLLLGPAFDYADFDSWLTCEMFRSLMEN 206 (512)
T ss_pred HHHHHHHHHHHhHHHhhcCCCccchhhhhhhhhhhcCCCcHHHHHHHHHHhhhhhcCCCcccchhhhhhhHHHHhhhhcC
Confidence 59999999999999999999888899999999999999999999999999999999999999999999985443 21
Q ss_pred c-ccCCCCCChHHHHHHHHHHHHHHHHHHHhceeeccccccchhhhcchhHHHHHHHHHHHhhhhhhhhhhHhhhhHHHH
Q psy217 78 E-SVNGLPNCVKPAITRSLLGFTYLGIYQLVNIIYSDEYMVSDEYMYAPFWKRSFVLGVWGRSAFYKYISVWLLGEGAII 156 (353)
Q Consensus 78 ~-~~~~~p~~~~~~~~r~~~~l~~~~l~~~~~~~~p~~~~~~~~f~~~~~~~r~~~~~~~~~~~r~kyy~~W~lae~~~~ 156 (353)
+ +++++|.+.++++.++.+|+++++++.++...+|.+++++++|..++++-|+.|.++.++..|.|||+||.++||+|+
T Consensus 207 pyEr~~~P~n~k~al~~~~~gL~wlILf~~g~~~~P~k~lL~~df~~~~~~~r~~Yl~l~~f~~R~KyY~AW~~S~GsCi 286 (512)
T COG5202 207 PYERPKRPPNGKLALATFLKGLGWLILFQVGRISIPRKHLLEEDFPVRLLPMRWAYLYLFTFGNRIKYYFAWHFSHGSCI 286 (512)
T ss_pred cccccCCCCCcccHHHHHHHHHHHHHHHHHhhhhccHHHhcCCcccccchhHHHHHHHHHHHHhheeeeEEEEecCCcEE
Confidence 1 235678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccccCCCCCcccccccccCcCeeecccccchhhhcccchHHHHHhhcccccccccCcch--hhHHHHHHHHHHhh
Q psy217 157 LSGLSYNGVSDSGKSLWNGCANVSLSVFEGATKFTHYVDSFNINTNHWVLENIYKRLKFLGNRL--ISQAAVLLFLAVWH 234 (353)
Q Consensus 157 ~~G~g~~G~~~~g~~~~~~~~N~~~~~~e~~~s~~~~~~~WN~~~~~WL~~yVY~rl~~~g~~~--~~~~~Tf~~sA~WH 234 (353)
++|+||||+|...++.||+++|+|++++|+|+|+++..+.||++||.|||++||.|+.++|+|+ .+++.||++||+||
T Consensus 287 l~glgyNg~Dstq~~rwdrvrNiD~~kvE~A~nvk~~leaWNmnTnkWLkn~vylrv~kkgkkpgF~stl~Tf~iSA~WH 366 (512)
T COG5202 287 LFGLGYNGPDSTQKIRWDRVRNIDFMKVELATNVKDLLEAWNMNTNKWLKNSVYLRVVKKGKKPGFWSTLGTFAISALWH 366 (512)
T ss_pred EeccccCCcccccccchhhhccCCceEEehhhhHHHHHHHhccccchhhhcceEEEEEecCCCcchHHHHHHHHHHHHHc
Confidence 9999999999988999999999999999999999999999999999999999999999999885 79999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--CCcchhhhHHHHHHHHHHHHhhcccceeecchhHHHhhhc
Q psy217 235 GFHSGYYATFFMEFIIIAFEKDFISVLEKNVTLLEFTR--RPYISSLTYLGLKVYTFVFLGYCIGPFALLSYSKWIRVYT 312 (353)
Q Consensus 235 G~~~gYyl~F~~~~l~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~t~~~l~y~~~~F~ll~~~~~~~~~~ 312 (353)
|.+||||++|++.++.+.+.|.-||.+| |.+-+-.. ..+.+.+||+++++.+.+..+|..++|.+|++++++.||+
T Consensus 367 Gi~pgYyltF~s~a~~qt~~K~~rR~~r--pfFlr~d~~tp~p~k~~ydv~g~~a~~l~~~Y~~~sF~lL~lk~s~~VW~ 444 (512)
T COG5202 367 GINPGYYLTFLSLAASQTIVKENRRLLR--PFFLREDGVTPLPSKSLYDVLGRIAMLLLTTYFSASFFLLSLKDSMYVWR 444 (512)
T ss_pred cCCchHHHHHHHHHHHhHHHHHHHhhcC--cccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 9999999999999999999999999876 44321111 1255789999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHH-hHhcCCCC
Q psy217 313 AYLFLGHVLFMMWPLYKIAV-VRWVLPPQ 340 (353)
Q Consensus 313 s~yf~~hi~~~~~~~~~~~~-~~~~~p~~ 340 (353)
|+||++||+.++.++++..- ++++.|+-
T Consensus 445 svYF~vHI~~afslavf~~piR~kl~~~I 473 (512)
T COG5202 445 SVYFAVHIFLAFSLAVFIAPIRKKLLPQI 473 (512)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 99999999998877776654 33555543
No 4
>KOG2705|consensus
Probab=100.00 E-value=2.2e-75 Score=538.57 Aligned_cols=337 Identities=34% Similarity=0.693 Sum_probs=322.5
Q ss_pred CCchhhHHHHHhHHhhhccCCCCCCCCChhhhhhhcccCCChhHhhHhhhcccccccCCccchHHHHHHHhCCCCCCccc
Q psy217 1 MPECVLVMKLTGLAYNLYDGLNPQPGLSKHAQSVALTKMPCPFQVFAHSFFPLTFLIGPHFSMTRYQDFVAGKFTEKESV 80 (353)
Q Consensus 1 ~~~MiltlKl~s~a~~~~dg~~~~~~l~~~q~~~~l~~~Pslleyl~Y~f~f~~~l~GP~~~~~~y~~~i~~~~~~~~~~ 80 (353)
||+||||+|+|++++|++||.|++++|++|||+.+|++.||++|.++|++||.|.++||+++++.|+++++|+..+.+|
T Consensus 119 mPhCiltLr~IGl~~Dv~DG~k~~~~Ls~dQk~tAi~~~PsLLEiaaFsyF~~gfLVGPQF~~~~y~~fV~Ge~~d~~G- 197 (471)
T KOG2705|consen 119 MPHCILTLRFIGLVMDVYDGAKKPEHLSPDQKLTAISDKPSLLEIAAFSYFFQGFLVGPQFTLSKYRSFVNGEWLDSDG- 197 (471)
T ss_pred cchHHHhhhhhheeeeeccCCCChhhcChhhhhhhhcCCchHHHHHHHhhhccceeecCcCcHHHHHHHhCCeeecCCC-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhceeeccccccchhhhcchhHHHHHHHHHHHhhhhhhhhhhHhhhhHHHHHhCC
Q psy217 81 NGLPNCVKPAITRSLLGFTYLGIYQLVNIIYSDEYMVSDEYMYAPFWKRSFVLGVWGRSAFYKYISVWLLGEGAIILSGL 160 (353)
Q Consensus 81 ~~~p~~~~~~~~r~~~~l~~~~l~~~~~~~~p~~~~~~~~f~~~~~~~r~~~~~~~~~~~r~kyy~~W~lae~~~~~~G~ 160 (353)
++|.+..|+++|+..|++++++..+...++|.+|+++|+|.+.||+.|+.|+.+++.+...||..+|+++|++||++|+
T Consensus 198 -~~p~s~~p~i~Rf~aG~fYlv~~q~g~~~ipd~Yflt~~y~n~sF~~R~~y~l~W~kf~lYKY~~cWLiTEGa~Il~GL 276 (471)
T KOG2705|consen 198 -QPPKSALPSIGRFLAGCFYLVLHQWGQFWIPDQYFLTDAYNNLSFFWRWSYVLLWFKFTLYKYCACWLITEGASILSGL 276 (471)
T ss_pred -CCCcccchhhHhHhcccHHHHHHHhccccCchhhcCChhhhcccHHHHHHHHHHHHHHHHHHHhhheeeecchHhhccC
Confidence 7888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCcccccccccCcCeeecccccchhhhcccchHHHHHhhcccccccccCcchhhHHHHHHHHHHhhccchhH
Q psy217 161 SYNGVSDSGKSLWNGCANVSLSVFEGATKFTHYVDSFNINTNHWVLENIYKRLKFLGNRLISQAAVLLFLAVWHGFHSGY 240 (353)
Q Consensus 161 g~~G~~~~g~~~~~~~~N~~~~~~e~~~s~~~~~~~WN~~~~~WL~~yVY~rl~~~g~~~~~~~~Tf~~sA~WHG~~~gY 240 (353)
|++|.|++|+++||+|+|++++..|+.+.....++++|++||.|.++|||+|+++.|||..+..+|..+.|+|||.|.||
T Consensus 277 g~nG~d~~G~~~Wdgc~n~ki~l~ETg~~~~~~v~SFN~nTN~wv~~yI~kRLkflnNk~~S~g~tL~fLAiWHGyHsGY 356 (471)
T KOG2705|consen 277 GHNGKDAEGNDRWDGCRNLKIILWETGHDYNSVVESFNCNTNTWVKNYIHKRLKFLNNKLASHGITLSFLAIWHGYHSGY 356 (471)
T ss_pred CcCCcccCCCCCcccccceEEEEEecCCccceeeeeeecChhHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCcchhhhHHHHHHHHHHHHhhcccceeecchhHHHhhhcccchhHHH
Q psy217 241 YATFFMEFIIIAFEKDFISVLEKNVTLLEFTRRPYISSLTYLGLKVYTFVFLGYCIGPFALLSYSKWIRVYTAYLFLGHV 320 (353)
Q Consensus 241 yl~F~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~t~~~l~y~~~~F~ll~~~~~~~~~~s~yf~~hi 320 (353)
|++|.++.+++.+|+++.|.+++.|.+.+..+++..+++|+++++......|+|+..+|.++.++.++.+++|+||+|||
T Consensus 357 ~~~F~me~~~V~~e~Q~~rli~~~P~ws~~~~~~i~~pfy~i~~k~~~~~~MG~~~taF~l~k~~~Wi~vyks~yf~Gfi 436 (471)
T KOG2705|consen 357 FLLFGMELGCVQAENQLYRLIKRTPGWSEAISKPISRPFYWIFGKLTISYSMGFAFTAFGLIKTKYWIGVYKSLYFIGFI 436 (471)
T ss_pred HHHHhhHhheeehHHHHHHHHHhCCcHHHHhcchhhhhHHHHHHhHHHHhhhHHHHHHHhhheeeeeeeeeeeeeehhHH
Confidence 99999999999999999999999999988888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcCCCC
Q psy217 321 LFMMWPLYKIAVVRWVLPPQ 340 (353)
Q Consensus 321 ~~~~~~~~~~~~~~~~~p~~ 340 (353)
+.+++.++...+ .++.||.
T Consensus 437 f~~lw~~f~~~~-~h~~~~~ 455 (471)
T KOG2705|consen 437 FYFLWPIFHMVL-LHVLPRH 455 (471)
T ss_pred HHHHHHHHHHHH-HHhcccc
Confidence 998766665555 3333443
No 5
>KOG2706|consensus
Probab=100.00 E-value=3.6e-48 Score=354.32 Aligned_cols=318 Identities=16% Similarity=0.241 Sum_probs=257.9
Q ss_pred CCchhhHHHHHhHHhhhccCCC----CCCCCChhhh----------hhhcccCC--ChhHhhHhhhcccccccCCccchH
Q psy217 1 MPECVLVMKLTGLAYNLYDGLN----PQPGLSKHAQ----------SVALTKMP--CPFQVFAHSFFPLTFLIGPHFSMT 64 (353)
Q Consensus 1 ~~~MiltlKl~s~a~~~~dg~~----~~~~l~~~q~----------~~~l~~~P--slleyl~Y~f~f~~~l~GP~~~~~ 64 (353)
|.|||+|+|+++++|+-.|..+ .+|+-+.||+ ++-..++| |..|.+.|.|.|+|+++||.++|+
T Consensus 106 mIQlIiTLki~GIaFEenaAWkrlqahdeqkkndqrdVHke~~ieikdYd~EL~slsaaEi~~Y~f~f~Gl~TGPYYrYq 185 (476)
T KOG2706|consen 106 MIQLIITLKIIGIAFEENAAWKRLQAHDEQKKNDQRDVHKEDEIEIKDYDTELPSLSAAEIFAYFFHFCGLFTGPYYRYQ 185 (476)
T ss_pred hhhheeeeEEEEEEeccchHHHHhhhhhhhhccchhhccccCCcchhhhhhccccchHHHHHHHHHHHhhhccCcceehh
Confidence 6899999999999999988753 1222222232 23456788 789999999999999999999999
Q ss_pred HHHHHHhCCCCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHhceeeccccccchhhhc-chhHHHHHHHHHHHhhhhhh
Q psy217 65 RYQDFVAGKFTEKESVNGLPNCVKPAITRSLLGFTYLGIYQLVNIIYSDEYMVSDEYMY-APFWKRSFVLGVWGRSAFYK 143 (353)
Q Consensus 65 ~y~~~i~~~~~~~~~~~~~p~~~~~~~~r~~~~l~~~~l~~~~~~~~p~~~~~~~~f~~-~~~~~r~~~~~~~~~~~r~k 143 (353)
.+.|..+....+.. | .+.+.++.+..+++...++++.++++|+++.++|+|.+ +||..|++|.++..+.+|.|
T Consensus 186 ~~~D~fem~fKs~a-----P-TlEakle~lkyalf~calflaTN~m~PLD~alSD~ffedrsF~~RLlYa~~~FftFkaR 259 (476)
T KOG2706|consen 186 MLIDSFEMIFKSWA-----P-TLEAKLEFLKYALFSCALFLATNHMFPLDIALSDAFFEDRSFFTRLLYAALIFFTFKAR 259 (476)
T ss_pred hhhhhcccchhccC-----c-hHHHHHHHHHHHHHHhHHHHhhccccchHHhhhhhhhhhHHHHHHHHHHHHHHhhhhHH
Confidence 99998876543221 1 34455666666888899999999999999999999665 78999999999999999999
Q ss_pred hhhhHhhhhHHHHHhCCCcc----------cc-----------CCCCCcccccccccCcCeeecccccchhhhcccchHH
Q psy217 144 YISVWLLGEGAIILSGLSYN----------GV-----------SDSGKSLWNGCANVSLSVFEGATKFTHYVDSFNINTN 202 (353)
Q Consensus 144 yy~~W~lae~~~~~~G~g~~----------G~-----------~~~g~~~~~~~~N~~~~~~e~~~s~~~~~~~WN~~~~ 202 (353)
-|.+|.++|+.|.++|+|-- |+ |++.++++|.+.|.|++++|++..+||.++.||.++|
T Consensus 260 iYs~laiaEciCtiaGfGaYP~~SdPk~geGPr~~~a~~K~dadenh~~nf~aIVN~~ileVE~c~~FRdGMK~WN~cVQ 339 (476)
T KOG2706|consen 260 IYSALAIAECICTIAGFGAYPAASDPKIGEGPRDLNAFDKLDADENHEMNFDAIVNLDILEVEFCDGFRDGMKAWNRCVQ 339 (476)
T ss_pred HHHHHHHHHHHHHHhccccccccCCCccCcCchhhhhhhccccccccccccceeEeccccceeechhhhHHHHHHHHHHH
Confidence 99999999999999999972 21 1224679999999999999999999999999999999
Q ss_pred HHHhhcccccccccCcchhhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCcchhhhHH
Q psy217 203 HWVLENIYKRLKFLGNRLISQAAVLLFLAVWHGFHSGYYATFFMEFIIIAFEKDFISVLEKNVTLLEFTRRPYISSLTYL 282 (353)
Q Consensus 203 ~WL~~yVY~rl~~~g~~~~~~~~Tf~~sA~WHG~~~gYyl~F~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 282 (353)
.||.-|||++.+. +.+++-+|+++||.|||++||||++|.-.++|...|+.+.|+.+++.... ..+.+.++.|
T Consensus 340 ~WLAlnV~klf~s---kkyRt~aTlLcSA~WHGfr~Ghffc~~ga~f~a~LEDm~dKLV~k~a~g~---sR~~id~Ifw- 412 (476)
T KOG2706|consen 340 TWLALNVHKLFKS---KKYRTEATLLCSAVWHGFRAGHFFCFGGAAFCAILEDMIDKLVPKDAEGG---SRPKIDRIFW- 412 (476)
T ss_pred HHHHHHHHHhcch---hhhcccceEeeehhhccccccceEEeccHHHHHHHHHHHHhhccccCCCC---ccceeEeeeh-
Confidence 9999999999973 23678889999999999999999999999999999999999887642221 1112212222
Q ss_pred HHHHHHHHHHhhcccceeecchhHHHhhhcccchhHHHHHHHHHHHHHHH
Q psy217 283 GLKVYTFVFLGYCIGPFALLSYSKWIRVYTAYLFLGHVLFMMWPLYKIAV 332 (353)
Q Consensus 283 ~~~~~t~~~l~y~~~~F~ll~~~~~~~~~~s~yf~~hi~~~~~~~~~~~~ 332 (353)
+.++.+....|+.-+|.|-++.+.+++|+|+|++|.|..+++-.++-++
T Consensus 413 -thifk~faFe~L~eaFLLkn~gdi~~F~SSiYhigyi~~aa~taigFYi 461 (476)
T KOG2706|consen 413 -THIFKCFAFEMLAEAFLLKNAGDIHHFWSSIYHIGYILPAACTAIGFYI 461 (476)
T ss_pred -hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHhhcceee
Confidence 2245566778889999999999999999999999999988774444333
No 6
>PF03062 MBOAT: MBOAT, membrane-bound O-acyltransferase family; InterPro: IPR004299 The MBOAT (membrane bound O-acyl transferase) family of membrane proteins contains a variety of acyltransferase enzymes. A conserved histidine has been suggested to be the active site residue [].
Probab=100.00 E-value=2.6e-43 Score=337.93 Aligned_cols=250 Identities=27% Similarity=0.467 Sum_probs=210.4
Q ss_pred CCchhhHHHHHhHHhhhccCCCCCCCCChhhhhhh----------cccCCChhHhhHhhhcccccccCCccchHHHHHHH
Q psy217 1 MPECVLVMKLTGLAYNLYDGLNPQPGLSKHAQSVA----------LTKMPCPFQVFAHSFFPLTFLIGPHFSMTRYQDFV 70 (353)
Q Consensus 1 ~~~MiltlKl~s~a~~~~dg~~~~~~l~~~q~~~~----------l~~~Pslleyl~Y~f~f~~~l~GP~~~~~~y~~~i 70 (353)
+++|++|+|++++++|++||...++++++++++.+ +.+.||++|+++|+++||++++||+++|+||.+++
T Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~l~~l~Y~~~fp~~~~GP~~~y~~f~~~~ 97 (322)
T PF03062_consen 18 LGLMYLTLKLISYAFDYYDGKFYEESLSQDQKKIATLRLRSSKRKIKKYPSLLEYLSYLFFFPTLLAGPILSYRDFLDFI 97 (322)
T ss_pred HHHHhHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 36899999999999999999987777887777766 88999999999999999999999999999999999
Q ss_pred hCCCCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHhceeeccccccchhhhcchhHHHHHHHHHHHhhhhhhhhhhH--
Q psy217 71 AGKFTEKESVNGLPNCVKPAITRSLLGFTYLGIYQLVNIIYSDEYMVSDEYMYAPFWKRSFVLGVWGRSAFYKYISVW-- 148 (353)
Q Consensus 71 ~~~~~~~~~~~~~p~~~~~~~~r~~~~l~~~~l~~~~~~~~p~~~~~~~~f~~~~~~~r~~~~~~~~~~~r~kyy~~W-- 148 (353)
+++..+... ..++....+++++..|++..++.....+.++.+.+.++++.+.+.+.+......+....+.++|..|
T Consensus 98 ~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (322)
T PF03062_consen 98 RSRRFRWDP--RQKSVFWRGLRLLFLGLFKKILIAYFLSFFPVNYLDSDEFWEKSLFLRLSLIYLWLFGFAYKYYLYFKF 175 (322)
T ss_pred hccccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhccchhhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 987554320 0123467788888888888888777777788888888887776666666666666666666666654
Q ss_pred ----hhhhHHHHHhCCCccccCCCCCcccccccccCcCe-eecccccchhhhcccchHHHHHhhccccccc----ccCcc
Q psy217 149 ----LLGEGAIILSGLSYNGVSDSGKSLWNGCANVSLSV-FEGATKFTHYVDSFNINTNHWVLENIYKRLK----FLGNR 219 (353)
Q Consensus 149 ----~lae~~~~~~G~g~~G~~~~g~~~~~~~~N~~~~~-~e~~~s~~~~~~~WN~~~~~WL~~yVY~rl~----~~g~~ 219 (353)
.++|+.+++.|+|+ |++.|.|+++ +|+++|++|+||+||+++|.||++|||+|+. ..+++
T Consensus 176 ~~~~~~a~~~~~~~G~~~-----------~~~~~~~~~~~~~~~~~~~~~~r~WN~~v~~wL~~yVY~~~~~~~~~~~~~ 244 (322)
T PF03062_consen 176 SGYWLFAEAAAILFGIGY-----------DGFAPRNFYRCWENSTSFSDFWRSWNISVHKWLKRYVYKPLGGSSRGKLSK 244 (322)
T ss_pred HhccHHHHHHHHcCCccc-----------cccCCcCchhhhhhcCcHHHHHHHhhhHHHHHHHHheeCcchhccccchhh
Confidence 88999999999987 3567778777 8999999999999999999999999999994 22345
Q ss_pred hhhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy217 220 LISQAAVLLFLAVWHGFHSGYYATFFMEFIIIAFEKDFISVLEK 263 (353)
Q Consensus 220 ~~~~~~Tf~~sA~WHG~~~gYyl~F~~~~l~~~~~~~~~~~~~~ 263 (353)
..++++||++||+|||+++||+++++..++.+.+|+..++..++
T Consensus 245 ~~a~~~tf~~sa~WHg~~~~~~~~~~~~~l~~~~e~~~~~~~~~ 288 (322)
T PF03062_consen 245 FLATLATFLFSALWHGFYPGYYLWFFFNGLGLFLERLFRPLFRK 288 (322)
T ss_pred HHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999987754
No 7
>KOG4312|consensus
Probab=100.00 E-value=7.2e-38 Score=289.23 Aligned_cols=298 Identities=15% Similarity=0.115 Sum_probs=240.7
Q ss_pred CCchhhHHHHHhHHhhhccCCCCCCCCChhhhhhhcccCCChhHhhHhhhcccccccCCccchHHHHHHHhCCCCCCccc
Q psy217 1 MPECVLVMKLTGLAYNLYDGLNPQPGLSKHAQSVALTKMPCPFQVFAHSFFPLTFLIGPHFSMTRYQDFVAGKFTEKESV 80 (353)
Q Consensus 1 ~~~MiltlKl~s~a~~~~dg~~~~~~l~~~q~~~~l~~~Pslleyl~Y~f~f~~~l~GP~~~~~~y~~~i~~~~~~~~~~ 80 (353)
.+|||..||+||++||+....+.+ .+.|++.+|++|+||+|+++.||+++|..|.+..+++....+
T Consensus 130 GiqMiv~Mkl~slgFdL~~~g~~~------------~r~p~p~~y~gYiYfp~tiifGPw~SF~~y~~~~~~r~~~~~-- 195 (449)
T KOG4312|consen 130 GIQMIVIMKLTSLGFDLEKAGSNK------------FRFPQPSSYVGYIYFPPTIIFGPWLSFEQYFKMRDKRWTGSE-- 195 (449)
T ss_pred hhHHHHHHHHHHhhccccccCCcC------------ccCCChHHhheehccCceeeeccchhHHHHHHHhcCCCcchH--
Confidence 369999999999999998743322 467999999999999999999999999999999998765432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhceeeccccccchhhhcchhHHHHHHHHHHHhhhhhhhhhhHhhhhHHHHHhCC
Q psy217 81 NGLPNCVKPAITRSLLGFTYLGIYQLVNIIYSDEYMVSDEYMYAPFWKRSFVLGVWGRSAFYKYISVWLLGEGAIILSGL 160 (353)
Q Consensus 81 ~~~p~~~~~~~~r~~~~l~~~~l~~~~~~~~p~~~~~~~~f~~~~~~~r~~~~~~~~~~~r~kyy~~W~lae~~~~~~G~ 160 (353)
+....+.....+++..++..+++++ ..|-|...| ++..+|..+.++|++.|++-.++|+...++|-
T Consensus 196 -----~l~~~~~~~~lail~~i~s~cV~p~------lf~fF~~ss---~fl~~y~~A~SfrfShYFVg~~tqA~~~~~gd 261 (449)
T KOG4312|consen 196 -----NLLGFIIQSLLAILNAITSACVSPC------LFEFFEPSS---QFLEDYLTAMSFRFSHYFVGLSTQAFVLMLGD 261 (449)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhhhhH------HHhhhCchH---HHHHHHHHHhhhhhhhhhHHHHHHHHHHHcCC
Confidence 3445566666676776666666665 223333344 67789999999999999999999999999995
Q ss_pred CccccCCCCCcccccccccCcCeeecccccchhhhcccchHHHHHhhcccccccccCcchhhHHHHHHHHHHhhccchhH
Q psy217 161 SYNGVSDSGKSLWNGCANVSLSVFEGATKFTHYVDSFNINTNHWVLENIYKRLKFLGNRLISQAAVLLFLAVWHGFHSGY 240 (353)
Q Consensus 161 g~~G~~~~g~~~~~~~~N~~~~~~e~~~s~~~~~~~WN~~~~~WL~~yVY~rl~~~g~~~~~~~~Tf~~sA~WHG~~~gY 240 (353)
|++. +.|.+....-+|+++|+++|+.+.+++||+++|+||++|||+|-.+ |+...+.+.||++|++-||+...-
T Consensus 262 Gatk-----EsDml~p~vs~PlniE~pRS~~~~V~sWN~Pmh~wL~~yifk~~lr-~~t~~~Vl~TyavSsLLHG~df~~ 335 (449)
T KOG4312|consen 262 GATK-----ESDMLVPVVSNPLNIEFPRSTLQTVSSWNKPMHTWLHEYIFKRRLR-NSTACNVLFTYAVSSLLHGLDFQM 335 (449)
T ss_pred Cccc-----ccccchhhhcCceeccccHHHHHHHHHcCCcHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHccchHHH
Confidence 5542 3345555677899999999999999999999999999999998764 334578999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----------cc---cccccccCCcch-hhhHHHHHHHHHHHHhhcccceeec----
Q psy217 241 YATFFMEFIIIAFEKDFISVLEK----------NV---TLLEFTRRPYIS-SLTYLGLKVYTFVFLGYCIGPFALL---- 302 (353)
Q Consensus 241 yl~F~~~~l~~~~~~~~~~~~~~----------~p---~~~~~~~~~~~~-~~~~~~~~~~t~~~l~y~~~~F~ll---- 302 (353)
++..++.++.+..|..+||.+.. || .+++-..++..| ++.+.+.-.+++++++|.++.|.--
T Consensus 336 ~~vLlsLaFiay~E~vlRkrLa~~lsaCv~ak~CP~~~~C~h~H~~~~grar~~NL~F~aLaifHLaylG~~f~~D~~~i 415 (449)
T KOG4312|consen 336 TIVLLSLAFIAYSETVLRKRLAARLSACVAAKACPVRLSCKHRHSNKTGRARIINLFFLALAIFHLAYLGMTFTDDYSAI 415 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCccchHHHHHHHHHHHHHHHHHHhcceeecchhhc
Confidence 99999999999999999987654 34 233333322332 4677888888999999999999854
Q ss_pred ---chhHHHhhhcccchhHHHHHHHHHHHHHHH
Q psy217 303 ---SYSKWIRVYTAYLFLGHVLFMMWPLYKIAV 332 (353)
Q Consensus 303 ---~~~~~~~~~~s~yf~~hi~~~~~~~~~~~~ 332 (353)
.++.+|..|.+.||..|.+.+..++++.++
T Consensus 416 ge~G~~~~wh~W~~~~y~Sh~i~fg~~~ly~~I 448 (449)
T KOG4312|consen 416 GEPGFDHAWHIWGSHYYSSHMISFGFLALYKII 448 (449)
T ss_pred CCCchhHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 478899999999999999999988877654
No 8
>COG1696 DltB Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=4e-24 Score=209.40 Aligned_cols=268 Identities=17% Similarity=0.149 Sum_probs=182.5
Q ss_pred HHHHHhHHhhhccCCCCCCCCChhhhhhhcccCCChhHhhHhhhcccccccCCccchHHHHHHHhCCCCCCcccCCCCCC
Q psy217 7 VMKLTGLAYNLYDGLNPQPGLSKHAQSVALTKMPCPFQVFAHSFFPLTFLIGPHFSMTRYQDFVAGKFTEKESVNGLPNC 86 (353)
Q Consensus 7 tlKl~s~a~~~~dg~~~~~~l~~~q~~~~l~~~Pslleyl~Y~f~f~~~l~GP~~~~~~y~~~i~~~~~~~~~~~~~p~~ 86 (353)
|.|.+++-.|++||..++. + ..++++|+.|+.|||++++||+.++++|.++.+.+..+. .++.
T Consensus 123 TF~~ia~l~e~~~~~~~~~----------~--~~~fl~f~~yvsFfP~~isGPI~r~~~f~~q~~~~~~~~-----~~~~ 185 (425)
T COG1696 123 TFKSIAYLVEVRDGLIAEH----------I--DWNFLRFLAYLSFFPTFISGPIIRFSRFVSQSKSPLPSF-----SPDL 185 (425)
T ss_pred eeeeheehhhHhcCchHHh----------h--hHHHHHHHHHHHHcchhhcCchhHHHHHHHhcCCCCccc-----cHHH
Confidence 5566777788888854321 1 358999999999999999999999999999998843322 3455
Q ss_pred hHHHHHHHHHHHHHHHHHHHhceeeccccccchhhhc-chhHHHHHHHHHHHhhhhhhhhhhHhhhhHHHHHhCCCcccc
Q psy217 87 VKPAITRSLLGFTYLGIYQLVNIIYSDEYMVSDEYMY-APFWKRSFVLGVWGRSAFYKYISVWLLGEGAIILSGLSYNGV 165 (353)
Q Consensus 87 ~~~~~~r~~~~l~~~~l~~~~~~~~p~~~~~~~~f~~-~~~~~r~~~~~~~~~~~r~kyy~~W~lae~~~~~~G~g~~G~ 165 (353)
...++.++..|++++.+.+-....... ...+.+.+ .+.+.-+..++....- .|+ .++..+..+.|++.-
T Consensus 186 ~~~~~~~i~~G~lkK~iIa~~l~~~a~--~~~~~~~~~~~~~~~~~~~~~y~~q----lyf--DFsGYsd~aig~a~l-- 255 (425)
T COG1696 186 IALGAVLILLGFLKKEIIAYFLAIYAI--LVFGAFANYTVFTSAWLGMYAYNIQ----LYF--DFSGYSDFALGLALL-- 255 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccccccccHHHHHHHHHHHHHH----HHH--cchhHHHHHHHHHHH--
Confidence 667899999999999886532222111 11112222 2333334433332211 111 133344444444331
Q ss_pred CCCCCcccccccccCcCeeecccccchhhhcccchHHHHHhhcccccccccCcch----hh-HHHHHHHHHHhhccchhH
Q psy217 166 SDSGKSLWNGCANVSLSVFEGATKFTHYVDSFNINTNHWVLENIYKRLKFLGNRL----IS-QAAVLLFLAVWHGFHSGY 240 (353)
Q Consensus 166 ~~~g~~~~~~~~N~~~~~~e~~~s~~~~~~~WN~~~~~WL~~yVY~rl~~~g~~~----~~-~~~Tf~~sA~WHG~~~gY 240 (353)
.+.+.++|+|. +..+.|++|+||+||||.++|+|||||.|++...++. .+ .+.+|+++++|||..+.|
T Consensus 256 -----~Gi~~PeNFn~--P~~a~si~~FWrRWHmSLS~W~rdYIyipLggsr~~~~~~~~~~l~~~~li~g~WHG~~w~f 328 (425)
T COG1696 256 -----FGIRLPENFNR--PYLAKSIKDFWRRWHMSLSTWFRDYIYIPLGGSRKKILRTQINFLLINFLLMGLWHGLGWTF 328 (425)
T ss_pred -----cCCCCchhccc--HHHHhhHHHHHHHHHhhHHHHhhhheEeecCCcccchHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 12346788874 6688999999999999999999999999999543221 34 688999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCcchhhhHHHHHHHHHHHHhhcccceeecchhHHHhhhcccchh
Q psy217 241 YATFFMEFIIIAFEKDFISVLEKNVTLLEFTRRPYISSLTYLGLKVYTFVFLGYCIGPFALLSYSKWIRVYTAYLFL 317 (353)
Q Consensus 241 yl~F~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~t~~~l~y~~~~F~ll~~~~~~~~~~s~yf~ 317 (353)
.+..+..+.....++...+. |.. . . ....+..++.++.|...++..+..|-....+...++.+.++-.
T Consensus 329 IlwG~~hg~~l~~~~~~~~~-k~~--~----~--~~~~~~~~l~~iitF~~v~~g~~~F~~~~~~~~~~~~~~~f~~ 396 (425)
T COG1696 329 ILWGLLHGVLLVLYRLISRY-KKI--K----N--PGNRLTILLMIIITFFFVCLGWLIFRSLLPGLAFTVVKALFGL 396 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHh--c----c--chhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 88888888888888877631 211 0 0 1023455777777877777778888899999888888776554
No 9
>KOG3860|consensus
Probab=99.69 E-value=8.9e-17 Score=157.96 Aligned_cols=211 Identities=13% Similarity=0.175 Sum_probs=143.0
Q ss_pred cccCCChhHhhHhhhcccccccCCccchHHHHHHHhCCCCCCcccCCCCCChHHHHHHHHHHHHHHHHHHHhceeecccc
Q psy217 36 LTKMPCPFQVFAHSFFPLTFLIGPHFSMTRYQDFVAGKFTEKESVNGLPNCVKPAITRSLLGFTYLGIYQLVNIIYSDEY 115 (353)
Q Consensus 36 l~~~Pslleyl~Y~f~f~~~l~GP~~~~~~y~~~i~~~~~~~~~~~~~p~~~~~~~~r~~~~l~~~~l~~~~~~~~p~~~ 115 (353)
..+.-++++|+.|+++.|-+..||+.+|++|..+.+.+..+ .+.+....-.+..++...+...+.+++.+..
T Consensus 199 ~~~~~l~~~yl~Y~~y~p~~~~gPIitfn~f~~q~~~~~~s--------~s~k~~~~~a~R~~~~~l~iE~ilHf~yi~A 270 (494)
T KOG3860|consen 199 PDQDYLLLNYLDYLFYAPVFTEGPIITFNRFLAQSEQPEPS--------LSLKLIVWYAVRSVSAFLLIEFILHFFYILA 270 (494)
T ss_pred CcHHHHHHHHHHHHHhhHHHhcCcchhHHHHHHHhcCCCcc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344678899999999999999999999999999876332 2344444333344444444444555544433
Q ss_pred ccch-hhhc-chhHHHHHHHHHHHhhhhhhhhhhHhhhhHHHHHhCCCccccCCCCCcccccccccCcCeeecccccchh
Q psy217 116 MVSD-EYMY-APFWKRSFVLGVWGRSAFYKYISVWLLGEGAIILSGLSYNGVSDSGKSLWNGCANVSLSVFEGATKFTHY 193 (353)
Q Consensus 116 ~~~~-~f~~-~~~~~r~~~~~~~~~~~r~kyy~~W~lae~~~~~~G~g~~G~~~~g~~~~~~~~N~~~~~~e~~~s~~~~ 193 (353)
+.++ .+.+ .|-+..-...+...+.+..||-..|-+--..+..-|+ |. ++|. |.++....+...+
T Consensus 271 I~~~~~~~n~~~~~~~~~iay~~l~~~~LK~lvlfg~~~~~A~lDgi-----~p--------Penm-PrCI~~~ysy~~~ 336 (494)
T KOG3860|consen 271 ISSDGAWENKLPYVESAGIAYFNLNFFWLKYLVLFGVFRLWALLDGI-----DP--------PENM-PRCISNIYSYVFF 336 (494)
T ss_pred HhcchhhhhcCcHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHhcCC-----CC--------Cccc-ccHHHHHHHHHHH
Confidence 3333 2333 3434444555666677777777777655555555544 22 2332 4566667788999
Q ss_pred hhcccchHHHHHhhcccccccccCcchhhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy217 194 VDSFNINTNHWVLENIYKRLKFLGNRLISQAAVLLFLAVWHGFHSGYYATFFMEFIIIAFEKDFISVLEKNVTLLE 269 (353)
Q Consensus 194 ~~~WN~~~~~WL~~yVY~rl~~~g~~~~~~~~Tf~~sA~WHG~~~gYyl~F~~~~l~~~~~~~~~~~~~~~p~~~~ 269 (353)
||.||.+.|+||.||||.|++.+.++.+++++||++-|+|||.+.--++.-....++...|+...+..++ |..++
T Consensus 337 WR~fd~gfn~wLiryvYiplgGs~~~~lat~~vFafVa~WHg~~~~ll~W~~L~~l~L~~E~~~~~l~~~-~~iqr 411 (494)
T KOG3860|consen 337 WRAFDRGFNKWLIRYVYIPLGGSRSSLLATLAVFAFVALWHGIYLYLLLWSWLNCLFLLPEIFNKQLTST-PKIQR 411 (494)
T ss_pred HHHHHHHHHHHHHHHeeeccCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHhhc-cchhh
Confidence 9999999999999999999996555568999999999999999985444444555677788877665543 55554
No 10
>PLN03242 diacylglycerol o-acyltransferase; Provisional
Probab=98.86 E-value=1.8e-08 Score=98.79 Aligned_cols=53 Identities=21% Similarity=0.439 Sum_probs=46.6
Q ss_pred eecccccchhhhcccchHHHHHhhcccccccccC-cchhhHHHHHHHHHHhhcc
Q psy217 184 FEGATKFTHYVDSFNINTNHWVLENIYKRLKFLG-NRLISQAAVLLFLAVWHGF 236 (353)
Q Consensus 184 ~e~~~s~~~~~~~WN~~~~~WL~~yVY~rl~~~g-~~~~~~~~Tf~~sA~WHG~ 236 (353)
.-.|+|+.|+||.||+++|.||.|+||.++...| +|..++++||++||+=|-+
T Consensus 297 WWNs~s~~eywR~WN~PVH~fl~RHVY~p~~~~g~sk~~A~~~vF~iSA~~HE~ 350 (410)
T PLN03242 297 WWNASEVSEYWRLWNMPVHYWLVRHVYFPCLRLGMPKQLAILVVFFISAVFHEV 350 (410)
T ss_pred hhccCcHHHHHHHcchHHHHHHHHHcChHhHhCCCChHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999998665 5568999999999999943
No 11
>PLN02401 diacylglycerol o-acyltransferase
Probab=98.81 E-value=4.2e-08 Score=96.86 Aligned_cols=53 Identities=19% Similarity=0.371 Sum_probs=46.9
Q ss_pred eecccccchhhhcccchHHHHHhhcccccccccC-cchhhHHHHHHHHHHhhcc
Q psy217 184 FEGATKFTHYVDSFNINTNHWVLENIYKRLKFLG-NRLISQAAVLLFLAVWHGF 236 (353)
Q Consensus 184 ~e~~~s~~~~~~~WN~~~~~WL~~yVY~rl~~~g-~~~~~~~~Tf~~sA~WHG~ 236 (353)
.-.|+|+.++||.||+++|.||.|+||.++...| +|..++++||++||+=|-+
T Consensus 322 WWNs~s~~eywR~WN~PVH~fL~RHVY~~~~~~g~sk~~A~~~vF~iSA~~HE~ 375 (446)
T PLN02401 322 WWNAKTVEEYWRMWNMPVHKWMVRHIYFPCLRNGISKGVAILIAFFVSAVFHEL 375 (446)
T ss_pred hhccCcHHHHHHHcchHHHHHHHHHcChHhhhCCCChHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999998765 5668999999999999953
No 12
>KOG0380|consensus
Probab=98.74 E-value=3.2e-08 Score=99.44 Aligned_cols=74 Identities=18% Similarity=0.400 Sum_probs=56.5
Q ss_pred eecccccchhhhcccchHHHHHhhcccccccccC-cchhhHHHHHHHHHHhhccc----------hhHHHHHHHHHHHHH
Q psy217 184 FEGATKFTHYVDSFNINTNHWVLENIYKRLKFLG-NRLISQAAVLLFLAVWHGFH----------SGYYATFFMEFIIIA 252 (353)
Q Consensus 184 ~e~~~s~~~~~~~WN~~~~~WL~~yVY~rl~~~g-~~~~~~~~Tf~~sA~WHG~~----------~gYyl~F~~~~l~~~ 252 (353)
.-.+.|..++||.||+++|.||.+|||+++...| +|..|+++||++||+=|-.- +.+++.++..+++..
T Consensus 393 WWNs~s~~~f~R~WN~PVH~wl~RHVY~p~~~~~~sK~~A~l~vF~vSAVfHEy~~~v~l~~Fr~~~f~~~m~Qipl~~~ 472 (523)
T KOG0380|consen 393 WWNSVSWDEFWRTWNVPVHKWLYRHVYKPMLSRGLSKSAATLAVFFVSAVFHEYVVSVPLRIFRPWMFYLFMFQIPLFFF 472 (523)
T ss_pred hhccCcHHHHHHHcCcHHHHHHHHHhhHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367899999999999999999999999998655 35679999999999999654 333444445555555
Q ss_pred HHHHH
Q psy217 253 FEKDF 257 (353)
Q Consensus 253 ~~~~~ 257 (353)
.++..
T Consensus 473 ~~~~~ 477 (523)
T KOG0380|consen 473 TARFF 477 (523)
T ss_pred HHHHh
Confidence 55444
No 13
>COG5056 ARE1 Acyl-CoA cholesterol acyltransferase [Lipid metabolism]
Probab=98.04 E-value=5.7e-05 Score=73.52 Aligned_cols=60 Identities=13% Similarity=0.248 Sum_probs=49.8
Q ss_pred cccccchhhhcccchHHHHHhhcccccccc--cCcchhhHHHHHHHHHHhhccc--------hhHHHHHH
Q psy217 186 GATKFTHYVDSFNINTNHWVLENIYKRLKF--LGNRLISQAAVLLFLAVWHGFH--------SGYYATFF 245 (353)
Q Consensus 186 ~~~s~~~~~~~WN~~~~~WL~~yVY~rl~~--~g~~~~~~~~Tf~~sA~WHG~~--------~gYyl~F~ 245 (353)
.+.|..|++|-||+++|.||.|.||.++.. +=+|..+++.||++||+=|-+- -||.++|-
T Consensus 399 Ncvsw~eFsr~WNkPVh~fLlRHVYhssis~~~lsKS~AtL~tFfiSsvvHE~vm~~i~~K~rgy~l~fq 468 (512)
T COG5056 399 NCVSWDEFSRIWNKPVHKFLLRHVYHSSISGFKLSKSQATLFTFFISSVVHELVMSIITKKARGYLLFFQ 468 (512)
T ss_pred ccccHHHHHHHhCcHHHHHHHHHhhcccccccccchhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999973 1244579999999999999653 67877663
No 14
>PF13813 MBOAT_2: Membrane bound O-acyl transferase family
Probab=94.29 E-value=0.025 Score=43.43 Aligned_cols=53 Identities=9% Similarity=0.000 Sum_probs=43.1
Q ss_pred ecccccchhhh-cccchHHHHHhhcccccccccCc----chhhHHHHHHHHHHhhccc
Q psy217 185 EGATKFTHYVD-SFNINTNHWVLENIYKRLKFLGN----RLISQAAVLLFLAVWHGFH 237 (353)
Q Consensus 185 e~~~s~~~~~~-~WN~~~~~WL~~yVY~rl~~~g~----~~~~~~~Tf~~sA~WHG~~ 237 (353)
-.+.|++++|- .||..+..-++...+..+...+. |....+++|++||+-|..-
T Consensus 9 ~~a~Slr~fWg~~WHq~~r~~~~~~~~~~~~~~~~~~~~r~~~l~~aF~~SGl~H~~~ 66 (83)
T PF13813_consen 9 WEAYSLRRFWGRRWHQLFRRPFSSIGYFPVRRVLGSKASRYLQLFGAFLISGLMHEAG 66 (83)
T ss_pred HHHCcHHHHHhhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999995 69999999999999888765332 3478999999999999753
No 15
>PF09900 DUF2127: Predicted membrane protein (DUF2127); InterPro: IPR021125 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=50.81 E-value=32 Score=29.10 Aligned_cols=35 Identities=14% Similarity=0.338 Sum_probs=28.7
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy217 226 VLLFLAVWHGFHSGYYATFFMEFIIIAFEKDFISVLE 262 (353)
Q Consensus 226 Tf~~sA~WHG~~~gYyl~F~~~~l~~~~~~~~~~~~~ 262 (353)
-...-++|+|-.++||++.++.+++...| ++...+
T Consensus 82 lvea~GLw~~k~Wae~lav~~~~~fiP~E--iyel~~ 116 (141)
T PF09900_consen 82 LVEAYGLWRGKRWAEWLAVISTGIFIPYE--IYELIR 116 (141)
T ss_pred HHHHHHHHHcCchHhHHHHHHHHHHHHHH--HHHHHh
Confidence 34467999999999999999999998887 555554
No 16
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=36.92 E-value=62 Score=24.04 Aligned_cols=10 Identities=30% Similarity=0.641 Sum_probs=4.3
Q ss_pred HhcCCCCCCC
Q psy217 334 RWVLPPQRPV 343 (353)
Q Consensus 334 ~~~~p~~~~~ 343 (353)
+..+|++++.
T Consensus 34 ~~~~~~~~~~ 43 (79)
T PF04277_consen 34 RKFAPKEKPA 43 (79)
T ss_pred Hhhccccccc
Confidence 4444444333
No 17
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.17 E-value=30 Score=25.15 Aligned_cols=21 Identities=5% Similarity=-0.084 Sum_probs=12.8
Q ss_pred HHHHHHHHHhHhcCCCCCCCC
Q psy217 324 MWPLYKIAVVRWVLPPQRPVR 344 (353)
Q Consensus 324 ~~~~~~~~~~~~~~p~~~~~~ 344 (353)
..++++.+.++-+.||++|.-
T Consensus 30 GnyvlY~Yaqk~lpp~kkkpv 50 (69)
T PF04689_consen 30 GNYVLYVYAQKTLPPKKKKPV 50 (69)
T ss_pred HHHHHHHHHhhcCCCCCCCcc
Confidence 345566677667777765543
No 18
>PF09094 DUF1925: Domain of unknown function (DUF1925); InterPro: IPR015178 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). It is adjacent to the C-terminal domain (see IPR015179 from INTERPRO). The exact function of this domain is, as yet, unknown. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=33.83 E-value=40 Score=25.73 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=13.4
Q ss_pred HHHHhhccchhHHHHHHHHHHH
Q psy217 229 FLAVWHGFHSGYYATFFMEFII 250 (353)
Q Consensus 229 ~sA~WHG~~~gYyl~F~~~~l~ 250 (353)
=.|+|||+.-|-|+.-+=-+.+
T Consensus 49 Nd~yWHG~FGGlYlp~LR~a~y 70 (80)
T PF09094_consen 49 NDAYWHGLFGGLYLPHLRHAAY 70 (80)
T ss_dssp GGGG--SSS-GGG-HHHHHHHH
T ss_pred CcchhcccccceecHHHHHHHH
Confidence 4579999999999977655554
No 19
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=31.33 E-value=45 Score=24.64 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCCCCC-CccccccC
Q psy217 319 HVLFMMWPLYKIAVVRWVLPPQRPVR-NGKEKKHA 352 (353)
Q Consensus 319 hi~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~ 352 (353)
|+.++++.++...+. --.|.+.+++ .++||.+|
T Consensus 3 hFaiLilavVaSAvV-MAyPe~dsAk~gnqekera 36 (78)
T PF11714_consen 3 HFAILILAVVASAVV-MAYPERDSAKDGNQEKERA 36 (78)
T ss_pred hHHHHHHHHHHHHHH-Hhccccchhhhcchhhhhh
Confidence 455555556666552 2344444443 33555554
No 20
>PF03832 WSK: WSK motif; InterPro: IPR001573 Cell signalling mediated via GPCRs (G-protein-coupled receptors) involves the assembly of receptors, G-proteins, effectors and downstream elements into complexes that approach in design 'solid-state' signalling devices. Scaffold molecules, such as the AKAPs (A-kinase anchoring proteins), were discovered more than a decade ago and represent dynamic platforms, enabling multivalent signalling []. This family of functionally related proteins is classified on the basis of their ability to associate with the PKA holoenzyme inside cells. A shared property of most, if not all, AKAPs is the ability to form multivalent signal transduction complexes. Each anchoring protein contains at least two functional motifs []. The conserved PKA binding motif forms an amphipathic helix of 14-18 residues that interacts with hydrophobic determinants located in the extreme N terminus of the regulatory subunit dimmer. The subcellular address of each AKAP is encoded by a unique targeting motif. Gravin, an autoantigen recognised by serum from myasthenia gravis patients contains 3 repeats of this domain []. The WSK motif is short motif, named after three conserved residues found in the WXSXK motif, found in protein kinase A anchoring proteins. ; GO: 0006605 protein targeting, 0007165 signal transduction
Probab=21.83 E-value=56 Score=20.31 Aligned_cols=19 Identities=32% Similarity=0.442 Sum_probs=8.5
Q ss_pred hHhcCCCCCCCCCccccccC
Q psy217 333 VRWVLPPQRPVRNGKEKKHA 352 (353)
Q Consensus 333 ~~~~~p~~~~~~~~~~~~~~ 352 (353)
|+.+-||+ +.+.++|.+.+
T Consensus 11 KrlVt~rk-rsks~~~q~~~ 29 (31)
T PF03832_consen 11 KRLVTPRK-RSKSSKEQKPE 29 (31)
T ss_pred HhhcCccc-ccccchhcccc
Confidence 34455554 44444444433
Done!