Query psy217
Match_columns 353
No_of_seqs 148 out of 997
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 18:05:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rmk_A MU-O-conotoxin mrvib; b 29.5 12 0.00041 21.9 0.1 18 44-61 12-29 (31)
2 3o7q_A L-fucose-proton symport 10.2 8.7E+02 0.03 21.5 8.7 7 311-317 208-214 (438)
3 2rdd_B UPF0092 membrane protei 7.9 36 0.0012 20.9 -1.7 7 337-343 22-28 (37)
4 4f4l_A ION transport protein; 7.6 1.7E+02 0.0059 22.2 1.8 13 311-323 69-81 (112)
5 2hjj_A Hypothetical protein YK 6.7 1.3E+02 0.0044 22.1 0.5 25 188-212 44-70 (87)
6 2zxe_G FXYD10, phospholemman-l 6.4 3.6E+02 0.012 19.2 2.7 21 312-332 17-37 (74)
7 1lbj_A Motilin; A-helix, B-tur 5.6 3.2E+02 0.011 15.2 1.6 14 59-72 3-16 (26)
8 2lsw_A Disabled homolog 2; pla 5.3 2.9E+02 0.0099 17.1 1.4 16 337-352 4-19 (40)
9 2dw3_A Intrinsic membrane prot 5.2 9E+02 0.031 17.3 4.3 13 334-346 51-63 (77)
10 1ymm_C MBP peptide, HLA class 4.2 4.7E+02 0.016 14.6 1.6 20 331-350 7-26 (26)
No 1
>1rmk_A MU-O-conotoxin mrvib; beta sheet, cystine knot; NMR {Conus marmoreus} SCOP: g.3.6.1
Probab=29.55 E-value=12 Score=21.91 Aligned_cols=18 Identities=11% Similarity=0.371 Sum_probs=15.8
Q ss_pred HhhHhhhcccccccCCcc
Q psy217 44 QVFAHSFFPLTFLIGPHF 61 (353)
Q Consensus 44 eyl~Y~f~f~~~l~GP~~ 61 (353)
..++++++.||++.||..
T Consensus 12 ~i~G~i~CC~GLIC~~~~ 29 (31)
T 1rmk_A 12 PILGFVYCCPGLICGPFV 29 (31)
T ss_dssp CTTCCCEESTTCCBCSSS
T ss_pred ceEEEEEecCCceEeeEE
Confidence 468999999999999974
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=10.19 E-value=8.7e+02 Score=21.52 Aligned_cols=7 Identities=0% Similarity=0.040 Sum_probs=3.6
Q ss_pred hcccchh
Q psy217 311 YTAYLFL 317 (353)
Q Consensus 311 ~~s~yf~ 317 (353)
|+..++.
T Consensus 208 w~~~~~~ 214 (438)
T 3o7q_A 208 VQTPYMI 214 (438)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=7.90 E-value=36 Score=20.88 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=3.3
Q ss_pred CCCCCCC
Q psy217 337 LPPQRPV 343 (353)
Q Consensus 337 ~p~~~~~ 343 (353)
.|.+|+|
T Consensus 22 RPQ~Kr~ 28 (37)
T 2rdd_B 22 RPQQKRT 28 (37)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 4554433
No 4
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=7.63 E-value=1.7e+02 Score=22.19 Aligned_cols=13 Identities=8% Similarity=0.306 Sum_probs=8.1
Q ss_pred hcccchhHHHHHH
Q psy217 311 YTAYLFLGHVLFM 323 (353)
Q Consensus 311 ~~s~yf~~hi~~~ 323 (353)
|..+||+..++..
T Consensus 69 ~a~iyFi~fi~i~ 81 (112)
T 4f4l_A 69 NAWVFFIPFIMLT 81 (112)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4557777666543
No 5
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=6.73 E-value=1.3e+02 Score=22.10 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=18.2
Q ss_pred cccchhhhcccc--hHHHHHhhccccc
Q psy217 188 TKFTHYVDSFNI--NTNHWVLENIYKR 212 (353)
Q Consensus 188 ~s~~~~~~~WN~--~~~~WL~~yVY~r 212 (353)
.+=+.+||.||- .-..||.+||=.-
T Consensus 44 ~eg~mvWR~wnFEpdAg~~LNryi~s~ 70 (87)
T 2hjj_A 44 TEGRMVWRAWNFEPDAGEGLNRYIRTS 70 (87)
T ss_dssp SSCCEEEEEESSSTTHHHHHHHHHTTT
T ss_pred CCCcEEEEeeccCCcHHHHHHHHHHHc
Confidence 345668999996 4678999887443
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=6.38 E-value=3.6e+02 Score=19.22 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=11.1
Q ss_pred cccchhHHHHHHHHHHHHHHH
Q psy217 312 TAYLFLGHVLFMMWPLYKIAV 332 (353)
Q Consensus 312 ~s~yf~~hi~~~~~~~~~~~~ 332 (353)
.++-=.|-|++.++++++..+
T Consensus 17 ~tLRigGLifA~vLfi~GI~i 37 (74)
T 2zxe_G 17 YRLRVVGLIVAAVLCVIGIII 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHheeccchhHHHHHHHHHHH
Confidence 344445666666655555443
No 7
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=5.57 E-value=3.2e+02 Score=15.24 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=11.0
Q ss_pred CccchHHHHHHHhC
Q psy217 59 PHFSMTRYQDFVAG 72 (353)
Q Consensus 59 P~~~~~~y~~~i~~ 72 (353)
|+|+|.+.+.+-+.
T Consensus 3 PiFt~selqr~qEk 16 (26)
T 1lbj_A 3 PIFTYGELQRMQEK 16 (26)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred ceeeHHHHHHHHHH
Confidence 89999998776653
No 8
>2lsw_A Disabled homolog 2; platelet aggregation inhibitor, sulfatides, dodecylphosphoch blood clotting; NMR {Homo sapiens}
Probab=5.28 E-value=2.9e+02 Score=17.07 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=7.7
Q ss_pred CCCCCCCCCccccccC
Q psy217 337 LPPQRPVRNGKEKKHA 352 (353)
Q Consensus 337 ~p~~~~~~~~~~~~~~ 352 (353)
.+++++.+++.|+..|
T Consensus 4 ~~~kk~~~~g~~rse~ 19 (40)
T 2lsw_A 4 GSSKKEKKKGPEKTDE 19 (40)
T ss_dssp --CCSSCSSSCCCCST
T ss_pred ccchhhhhcCcchhHH
Confidence 4455555556666543
No 9
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=5.20 E-value=9e+02 Score=17.25 Aligned_cols=13 Identities=23% Similarity=0.199 Sum_probs=8.7
Q ss_pred HhcCCCCCCCCCc
Q psy217 334 RWVLPPQRPVRNG 346 (353)
Q Consensus 334 ~~~~p~~~~~~~~ 346 (353)
.++.|+++||.-+
T Consensus 51 G~~LPE~Sr~aP~ 63 (77)
T 2dw3_A 51 GRMLPIQENQAPA 63 (77)
T ss_dssp HHCTTTTCSSCSS
T ss_pred HHhCchhcccCCC
Confidence 6778888766433
No 10
>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens}
Probab=4.21 E-value=4.7e+02 Score=14.62 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHhHhcCCCCCCCCCccccc
Q psy217 331 AVVRWVLPPQRPVRNGKEKK 350 (353)
Q Consensus 331 ~~~~~~~p~~~~~~~~~~~~ 350 (353)
++|+-+.||....++++...
T Consensus 7 FFKNivspr~pp~~q~~~~~ 26 (26)
T 1ymm_C 7 FFKNIVTPRGGSGGGGGXXX 26 (26)
T ss_pred hhhhccCCCCCCCCcCCCCC
Done!