RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy217
(353 letters)
>gnl|CDD|215190 PLN02332, PLN02332, membrane bound O-acyl transferase (MBOAT)
family protein.
Length = 465
Score = 138 bits (350), Expect = 3e-37
Identities = 85/351 (24%), Positives = 147/351 (41%), Gaps = 15/351 (4%)
Query: 5 VLVMKLTGLAYNLYDGLNPQPGLSKHAQSVALTKMPCPFQVFAHSFFPLTFLIGPHFSMT 64
VL +K+ A N DGL + GL + + L ++P + + + L GP F
Sbjct: 124 VLTLKVISCAMNYQDGLLKEEGLREAQKKNRLIQLPSLIEYLGYCLCCGSHLAGPVFEFR 183
Query: 65 RYQDFVAGK-FTEKESVNGLPNCVKPAITRSLLGFTYLGIYQLVNIIYSDEYMVSDEYMY 123
Y D+ GK + + P+ + L +G+Y + + +Y
Sbjct: 184 DYLDWTEGKGLWDPNAKGKCPSPYGATLRALLQAAICMGLYLYLTPQFPLSRFTEPDYQE 243
Query: 124 APFWKRSFVLGVWGRSAFYKYISVWLLGEGAIILSGLSYNGVSDSG--KSLWNGCANVSL 181
FW R + G +A +KY +W + E AII+SGL ++G G K+ W+ NV +
Sbjct: 244 WGFWHRFGYQYMSGFTARWKYYFIWSISEAAIIISGLGFSGWDGEGKPKAKWDRAKNVDI 303
Query: 182 SVFEGATKFTHYVDSFNINTNHWVLENIYKRLKFLGNR--LISQAAVLLFLAVWHGFHSG 239
E A +NI + W+ +Y+RL G + A AVWHG + G
Sbjct: 304 LGVELAKSAVQIPLVWNIQVSTWLRHYVYERLVPKGKKPGFFQLLATQTVSAVWHGLYPG 363
Query: 240 YYATFFMEFIIIAFEKDFISVLEKNVTLLEFTRRPYISSLTYLGLKVYTFVFLGYCIGPF 299
Y F ++IA + V+ + + + + L ++ +YT + L Y F
Sbjct: 364 YILFFVQSALMIAGSR----VIYRWQQAIPPSMALARNLLVFINF-LYTVLVLNYSCVGF 418
Query: 300 ALLSYSKWIRVYTAYLFLGHVLFMMWPLYKIAVVRWVLPPQRPVRNGKEKK 350
LLS + + Y + ++G ++ P+ I + V+ P+R R K+
Sbjct: 419 MLLSLDETLAAYGSVYYIGTII----PVVLILLGS-VVKPKRKARPKSRKE 464
>gnl|CDD|227529 COG5202, COG5202, Predicted membrane protein [Function unknown].
Length = 512
Score = 120 bits (301), Expect = 4e-30
Identities = 85/348 (24%), Positives = 142/348 (40%), Gaps = 7/348 (2%)
Query: 5 VLVMKLTGLAYNLYDGLNPQPGLSKHAQSVALTKMPCPFQVFAHSFFPLTFLIGPHFSMT 64
VL MKLT A++ YDG L++H +S A P ++ FF L+GP F
Sbjct: 130 VLTMKLTSFAWSYYDGKEYSSDLTEHQKSRARRGTPTVLDFLSYIFFIPGLLLGPAFDYA 189
Query: 65 RYQDFVAGKF-----TEKESVNGLPNCVKPAITRSLLGFTYLGIYQLVNIIYSDEYMVSD 119
+ ++ + P K A+ L G +L ++Q+ I ++++ +
Sbjct: 190 DFDSWLTCEMFRSLMENPYERPKRPPNGKLALATFLKGLGWLILFQVGRISIPRKHLLEE 249
Query: 120 EYMYAPFWKRSFVLGVWGRSAFYKYISVWLLGEGAIILSGLSYNGVSDSGKSLWNGCANV 179
++ R L ++ KY W G+ IL GL YNG + K W+ N+
Sbjct: 250 DFPVRLLPMRWAYLYLFTFGNRIKYYFAWHFSHGSCILFGLGYNGPDSTQKIRWDRVRNI 309
Query: 180 SLSVFEGATKFTHYVDSFNINTNHWVLENIYKRLKFLGNRLISQAAVLLFL--AVWHGFH 237
E AT ++++N+NTN W+ ++Y R+ G + + + F A+WHG +
Sbjct: 310 DFMKVELATNVKDLLEAWNMNTNKWLKNSVYLRVVKKGKKPGFWSTLGTFAISALWHGIN 369
Query: 238 SGYYATFFMEFIIIAFEKDFISVLEKNVTLLEFTRRPYISSLTYLGLKVYTFVFLGYCIG 297
GYY TF K+ +L + SL + ++ + Y
Sbjct: 370 PGYYLTFLSLAASQTIVKENRRLLRPFFLREDGVTPLPSKSLYDVLGRIAMLLLTTYFSA 429
Query: 298 PFALLSYSKWIRVYTAYLFLGHVLFMMWPLYKIAVVRWVLPPQRPVRN 345
F LLS + V+ + F H+ IA +R L PQ +N
Sbjct: 430 SFFLLSLKDSMYVWRSVYFAVHIFLAFSLAVFIAPIRKKLLPQIGKKN 477
>gnl|CDD|217346 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransferase family.
The MBOAT (membrane bound O-acyl transferase) family of
membrane proteins contains a variety of acyltransferase
enzymes. A conserved histidine has been suggested to be
the active site residue.
Length = 309
Score = 107 bits (270), Expect = 6e-27
Identities = 61/303 (20%), Positives = 109/303 (35%), Gaps = 23/303 (7%)
Query: 1 MPECVLVMKLTGLAYNLYDGLNPQPGLSKHAQSVALTKMPCPFQVFAHSFFPLTFLIGPH 60
+ L KL L ++YDG + LS + + L K+P + A+ FF T L GP
Sbjct: 18 LGISYLTFKLIALIMDVYDGKGKESLLSGDQKEILLIKIPSLLEFLAYLFFFPTLLSGPI 77
Query: 61 FSMTRYQDFVAGKFTEKESVNGLPNCVKPAITRSLLGFTYLGIYQLVNIIYSDEYMVSDE 120
+ F+ + + + A+ LGF Y + + + + +
Sbjct: 78 LRYRDFMKFLELPLVSWDYLTKSL--LARAVRLLFLGFLYKVLIAYLLSYLPLKLLTTPA 135
Query: 121 YMYAPFWKRSFVLGVWGRSAFYKYISVW-----LLGEGAIILSGLSYNGVSDSGKSLWNG 175
M F R V+ Y Y + L G +L G+ + + K + N
Sbjct: 136 IMSVGFLLRFSVIAAILVMYAYSYYLFFDFAYSLFAIGVSLLFGIGFRTPENFNKPVEN- 194
Query: 176 CANVSLSVFEGATKFTHYVDSFNINTNHWVLENIYKRL----KFLGNRLISQAAVLLFLA 231
+ + +NI+ + W+ +YKRL N+ ++ A L A
Sbjct: 195 -----------SQSIKEFWRRWNISLSFWLRRYVYKRLGGSKNGKLNKFLATLATFLVSA 243
Query: 232 VWHGFHSGYYATFFMEFIIIAFEKDFISVLEKNVTLLEFTRRPYISSLTYLGLKVYTFVF 291
VWHG GY + + + EK F ++ K R ++ + +L + +F
Sbjct: 244 VWHGLAWGYILWGLLHALFLILEKVFRRLVRKIFLRSSGRRPLLLNVIFWLFAFLGGSLF 303
Query: 292 LGY 294
Sbjct: 304 FLL 306
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the immunosuppressant
FK506 in Streptomyces strain MA6548.
Length = 144
Score = 30.0 bits (68), Expect = 1.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 233 WHGFHSGYYATFFMEFIIIAFE--KDFISVLEKNVTL 267
G S Y+A E +IAFE D +LE+NV L
Sbjct: 8 NIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVKL 44
>gnl|CDD|185325 PRK15427, PRK15427, colanic acid biosynthesis glycosyltransferase
WcaL; Provisional.
Length = 406
Score = 29.7 bits (67), Expect = 2.3
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 181 LSVFEGATKFTHYV-DSFNI-NTNHWVLENIYKRLKFLGNRLISQAAVLLFLAVWHGFHS 238
+++ +G T+ TH +N+ W+ + ++ L +R + W +
Sbjct: 35 VALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQTLRGIHRKNTWKALNL 94
Query: 239 GYY 241
Y
Sbjct: 95 KRY 97
>gnl|CDD|218168 pfam04602, Arabinose_trans, Mycobacterial cell wall arabinan
synthesis protein. Arabinosyltransferase is involved in
arabinogalactan (AG) biosynthesis pathway in
mycobacteria. AG is a component of the macromolecular
assembly of the mycolyl-AG-peptidoglycan complex of the
cell wall. This enzyme has important clinical
applications as it is believed to be the target of the
antimycobacterial drug Ethambutol.
Length = 1075
Score = 29.4 bits (66), Expect = 3.7
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 202 NHWVLENIYKRLKFLGNRLISQAAVLLFLAVWHGFHSG 239
+ VL + + G+R A +FLA W F++G
Sbjct: 332 SREVLPRLGPAVA--GSRAAMWTAGAVFLAAWLPFNNG 367
>gnl|CDD|182833 PRK10913, PRK10913, dipeptide transporter; Provisional.
Length = 300
Score = 28.6 bits (64), Expect = 5.2
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 14/61 (22%)
Query: 53 LTFLIGPHF-SMTR-------YQDF-----VAGKFTEKES-VNGLPNCVKPAITRSLLGF 98
LTF+ PH+ +TR +D+ VAG ++ +N LPNC+ P I ++ LGF
Sbjct: 168 LTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGF 227
Query: 99 T 99
+
Sbjct: 228 S 228
>gnl|CDD|233706 TIGR02070, mono_pep_trsgly, monofunctional biosynthetic
peptidoglycan transglycosylase. This family is one of
the transglycosylases involved in the late stages of
peptidoglycan biosynthesis. Members tend to be small,
about 240 amino acids in length, and consist almost
entirely of a domain described by Pfam model pfam00912
for transglycosylases. Species with this protein will
have several other transglycosylases as well. All
species with this protein are Proteobacteria that
produce murein (peptidoglycan) [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan].
Length = 224
Score = 28.2 bits (63), Expect = 6.3
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 306 KWIRVYTAYLFLGHVLFMMWPLYKIAVVRWVLPPQRPV 343
I A + L F + +A R+V PP
Sbjct: 2 YVIGCLVAGVLL----FNLAVFAALASWRFVPPPSTAF 35
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 28.3 bits (63), Expect = 7.5
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 64 TRY--QDFVAGKFTEKESVNGLPNCVKPAITRSLLGF 98
TRY Q+ ++ K EKE +NGL C KP R++ GF
Sbjct: 234 TRYAKQETLS-KIPEKEKINGLIKCEKP--NRNIYGF 267
>gnl|CDD|235610 PRK05788, PRK05788, cobalamin biosynthesis protein CbiG; Validated.
Length = 315
Score = 27.9 bits (63), Expect = 9.1
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 16/73 (21%)
Query: 102 GIYQLVN------IIYSDEYMVSDEYMYAPFWKRSFVL---GVWGRSAFYKYISVWLLGE 152
G+ QL I +S E + E+ + SFV GV G + S L
Sbjct: 242 GLLQLAEELGVPFITFSKEELNEVEHKFPG---SSFVKKTVGVGGVAE----PSALLASN 294
Query: 153 GAIILSGLSYNGV 165
G +IL L YNGV
Sbjct: 295 GKLILEKLKYNGV 307
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.142 0.456
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,413,787
Number of extensions: 1804862
Number of successful extensions: 1974
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1958
Number of HSP's successfully gapped: 49
Length of query: 353
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 255
Effective length of database: 6,590,910
Effective search space: 1680682050
Effective search space used: 1680682050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.4 bits)