RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy217
(353 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 54/332 (16%), Positives = 93/332 (28%), Gaps = 111/332 (33%)
Query: 64 TRYQDFVAGKFTEKESVNGLPNCVKPAITRSLLGF--TYLG---IYQLVNIIYSDEYMVS 118
++ +V+ E V + +T F YL I+ L + +
Sbjct: 62 GKFLGYVSSL-VEPSKVGQFDQVLNLCLTE----FENCYLEGNDIHALAAKLLQEND--- 113
Query: 119 DEYMYAPFWKRSFVLGVWGRSAFYKYISVWLLGEGAIILSGLSYNGVSDSGKSLWNGCAN 178
K ++ + A I++ ++ S+S +L+
Sbjct: 114 -----TTLVKTKELI-----KNYIT----------ARIMAKRPFDKKSNS--ALFR---- 147
Query: 179 VSLSVFEGATKFTHYVDSFNI-----NTNHWV--LENIYKRLKFLGNRLISQAAVLL--F 229
+V EG + I NT+ + L ++Y+ L LI +A L
Sbjct: 148 ---AVGEGNAQL------VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 230 LAVWHGFHSGYYATFFMEFIIIAFEKDFISVLEKNVTLLEFTRRP---YISS-------- 278
+ + + + LE P Y+ S
Sbjct: 199 IRTTLDAEKVFTQGL-----------NILEWLENPSN------TPDKDYLLSIPISCPLI 241
Query: 279 -LTYLGLKVYTFVFLGYCIGPFALLSYSKWI-----RVYTAYL---------FLGHVLFM 323
+ L V T LG+ P L SY K + TA F V
Sbjct: 242 GVIQLAHYVVTAKLLGFT--PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 324 MWPLYKI------AVVRWVLPP---QRPVRNG 346
+ L+ I A LPP + + N
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Score = 34.6 bits (79), Expect = 0.055
Identities = 55/292 (18%), Positives = 90/292 (30%), Gaps = 99/292 (33%)
Query: 15 YNLYDGLNPQPGLSKHAQSVA-LTKMPCPFQ-VFAHSFFPLTFLIGPHFSMTRYQDFVAG 72
Y Y L + A++++ L + + VF L +L P S T +D++
Sbjct: 177 YQTYHVL-VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP--SNTPDKDYLL- 232
Query: 73 KFTEKESVNGLPNCVKPAITRSLLGFTYLGIYQLVNIIYSDEYMVSDEYM-YAPFWKRSF 131
+I S +G+ QL + Y+V+ + + + P RS+
Sbjct: 233 -----------------SIPIS---CPLIGVIQLAH------YVVTAKLLGFTPGELRSY 266
Query: 132 VLGVWGRSA----------------FY----KYISVWLLGEG-----AIILSGLSYNGVS 166
+ G G S F+ K I+ L G A + L + +
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT-VLFFIGVRCYEAYPNTSLPPSILE 325
Query: 167 DSGKSLWNGCANVS--LSVFEGATKFT--HYVDSFN-------------INT-NHWVLEN 208
DS + N S LS+ T+ YV+ N +N + V+
Sbjct: 326 DSLE---NNEGVPSPMLSI-SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 209 IYKRLKFLGNRLISQAA------------------VLLFLAVWHGFHSGYYA 242
+ L L L A FL V FHS
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.11
Identities = 49/306 (16%), Positives = 91/306 (29%), Gaps = 87/306 (28%)
Query: 19 DGLNPQPGLSKHAQSVALTKMPCPFQVFAHSFFPLTF-LIG---PHFSMT--RYQDFVAG 72
L P S + + P +V + P +I T ++
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 73 KFTE--KESVNGLPNCVKPAITRSLLGFTYLGIYQL-VNI------------IYSDEYMV 117
K T + S+N L +PA R + F L ++ +I I SD +V
Sbjct: 354 KLTTIIESSLNVL----EPAEYRKM--FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 118 SDEYMYAPFWKRSFVLGVWGRSAFYKY-----ISVWLLGEGAI---ILSGLSYNGVSDSG 169
++ K S V S + V L E A+ I+ YN
Sbjct: 408 VNK-----LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPK--- 457
Query: 170 KSLWNGCANVSLSVFEGATKFTHYV----------DSFNINTNHWVLENIYKRLKFLGNR 219
+ L + F ++ + + ++ +FL +
Sbjct: 458 TFDSDDLIPPYLDQY-----FYSHIGHHLKNIEHPERMTL------FRMVFLDFRFLEQK 506
Query: 220 LI----------SQAAVLLFLAVWHGF---HSGYYATFFMEFIIIAFEKDFISVLEKNVT 266
+ S L L + + + Y E ++ A DF+ +E+N+
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY-----ERLVNAIL-DFLPKIEENLI 560
Query: 267 LLEFTR 272
++T
Sbjct: 561 CSKYTD 566
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.4
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 7/23 (30%)
Query: 76 EKESVNGLPNCVK-------PAI 91
EK+++ L +K PA+
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL 40
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 29.2 bits (64), Expect = 2.1
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 296 IGPFALLSYSKWIRVYTAYLFLGHVLFMMWPLYKIAVVR 334
I LS+ + +R T Y+ + F PL + ++R
Sbjct: 44 IEHNRDLSFLRSVREVTGYVLVALNQFRYLPLENLRIIR 82
>3st1_A Necrosis-and ethylene-inducing protein; mpnep2, NLP family, unknown
function, toxin; 1.80A {Moniliophthora perniciosa}
Length = 214
Score = 28.5 bits (63), Expect = 2.9
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 121 YMYAPFWKRSFVLGVWGRSAFYKYISVWLLGEGAIILSGLSYNGVSDSGKSLWNGCANVS 180
+YA + + + G ++ V+L + I GV+ S W N
Sbjct: 83 LVYAWYMPKDEISTGIGHRHDWEGAVVFLNSDTQQID------GVAASAHGKWRKYPNPG 136
Query: 181 LSVFEGATKFTHYVDSFNINT 201
+ + Y IN+
Sbjct: 137 GANIDDTHVKLQYSAEPVINS 157
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase,
NADP, pantothenate BIOS PSI-2, protein structure
initiative; 1.90A {Methylococcus capsulatus}
Length = 320
Score = 27.6 bits (62), Expect = 7.1
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 62 SMTRYQDFVAGKFTEKESVNGLP 84
SM DF AG+ E E + G
Sbjct: 257 SM--LVDFEAGQPMETEVILGNA 277
>1cx1_A Endoglucanase C; cellulose-binding domain, cellooligosacharides,
cellulase, protein- carbohydrate interaction, hydrolase;
NMR {Cellulomonas fimi} SCOP: b.18.1.14
Length = 153
Score = 26.5 bits (58), Expect = 9.2
Identities = 6/43 (13%), Positives = 9/43 (20%), Gaps = 4/43 (9%)
Query: 162 YNGVSDSGKSLWNGCANVSLSVFEGATKFTHYVDSFNINTNHW 204
+ W+ +G VD N W
Sbjct: 11 PHTSFAESLGPWSLYGTSEPVFADGRMC----VDLPGGQGNPW 49
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 27.2 bits (61), Expect = 9.5
Identities = 5/21 (23%), Positives = 8/21 (38%), Gaps = 2/21 (9%)
Query: 62 SMTRYQDFVAGKFTEKESVNG 82
SM D G+ E ++
Sbjct: 258 SM--EIDREEGRPLEIAAIFR 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.456
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,501,584
Number of extensions: 318515
Number of successful extensions: 607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 10
Length of query: 353
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 258
Effective length of database: 4,049,298
Effective search space: 1044718884
Effective search space used: 1044718884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.6 bits)