Query psy2170
Match_columns 78
No_of_seqs 104 out of 353
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 18:05:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1959|consensus 99.9 1.5E-26 3.3E-31 192.3 4.4 66 7-72 36-109 (996)
2 PLN02701 alpha-mannosidase 99.9 3.1E-24 6.7E-29 181.1 6.6 65 7-71 39-103 (1050)
3 KOG1958|consensus 99.9 9.4E-24 2E-28 176.8 6.4 69 3-71 158-226 (1129)
4 PF01074 Glyco_hydro_38: Glyco 99.8 7.7E-20 1.7E-24 131.9 5.0 63 9-72 1-63 (275)
5 PRK09819 alpha-mannosidase; Pr 99.5 5.7E-14 1.2E-18 116.4 6.4 65 6-71 2-68 (875)
6 COG0383 AMS1 Alpha-mannosidase 96.0 0.00089 1.9E-08 57.4 -1.9 40 9-49 5-44 (943)
7 KOG4342|consensus 76.7 7.2 0.00016 34.1 5.6 52 6-58 279-330 (1078)
8 cd01779 Myosin_IXb_RA ubitquit 67.9 3.4 7.3E-05 27.6 1.4 29 33-61 36-64 (105)
9 COG4068 Uncharacterized protei 56.8 3.8 8.2E-05 25.2 0.1 9 11-19 4-12 (64)
10 PF03008 DUF234: Archaea bacte 50.3 9 0.0002 24.1 1.1 42 25-69 27-68 (100)
11 PF13608 Potyvirid-P3: Protein 35.0 18 0.00039 29.0 0.8 17 59-75 422-439 (445)
12 PF11225 DUF3024: Protein of u 34.6 32 0.0007 19.9 1.7 18 36-53 39-56 (57)
13 PF06345 Drf_DAD: DRF Autoregu 34.2 41 0.00089 15.1 1.6 12 37-48 2-13 (15)
14 COG3082 Uncharacterized protei 32.0 53 0.0012 20.6 2.4 24 27-50 5-28 (74)
15 PF09954 DUF2188: Uncharacteri 29.8 26 0.00057 20.1 0.8 16 10-27 1-16 (62)
16 PRK13689 hypothetical protein; 28.9 62 0.0014 20.4 2.4 24 27-50 5-28 (75)
17 cd02983 P5_C P5 family, C-term 27.8 91 0.002 20.5 3.2 42 10-59 25-66 (130)
18 PF12129 Phtf-FEM1B_bdg: Male 25.3 31 0.00067 24.6 0.6 15 59-73 83-97 (159)
19 PF07011 DUF1313: Protein of u 24.5 1.4E+02 0.003 19.4 3.5 33 18-51 3-38 (87)
20 cd07850 STKc_JNK Catalytic dom 24.4 65 0.0014 23.3 2.2 33 37-69 287-322 (353)
21 cd03131 GATase1_HTS Type 1 glu 24.0 35 0.00077 24.1 0.7 12 9-20 147-158 (175)
22 PF06489 Orthopox_A49R: Orthop 21.4 70 0.0015 22.6 1.8 35 25-59 97-133 (162)
No 1
>KOG1959|consensus
Probab=99.93 E-value=1.5e-26 Score=192.27 Aligned_cols=66 Identities=44% Similarity=0.955 Sum_probs=62.3
Q ss_pred cceEEEeeCccCCchhhhhHHHHHH--------HhHhhHHHHHHHHHhcCCCCeEEhhhHHHHHHHHhhccccc
Q psy2170 7 LTIVFLVPHSHNDPGWLKTFESYYH--------SQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKLR 72 (78)
Q Consensus 7 ~~~VhlVPHSH~D~GWl~T~eeYy~--------~~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff~~Ww~~q~~~~ 72 (78)
+.+||+|||||+|.||++|+|+||. ..|++|||+|+++|.+||+||||++|++||.|||++|+...
T Consensus 36 ~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rWW~~qS~~~ 109 (996)
T KOG1959|consen 36 MINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARWWNEQSETQ 109 (996)
T ss_pred eeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHHHHhcCHHH
Confidence 5789999999999999999999999 45999999999999999999999999999999999998764
No 2
>PLN02701 alpha-mannosidase
Probab=99.90 E-value=3.1e-24 Score=181.10 Aligned_cols=65 Identities=48% Similarity=1.031 Sum_probs=62.1
Q ss_pred cceEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEEhhhHHHHHHHHhhcccc
Q psy2170 7 LTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKL 71 (78)
Q Consensus 7 ~~~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff~~Ww~~q~~~ 71 (78)
+++||+|||||||+||++|+|+||...++.|+|+|++.|++||+|||+|+|++||++||++++++
T Consensus 39 ~l~VhlVpHSH~D~gWl~T~~eyy~~~~~~ild~vv~~L~~dp~rkFi~~E~~fl~~Ww~~~~pe 103 (1050)
T PLN02701 39 KLKVFVVPHSHNDPGWILTVEEYYQEQSRHILDTIVESLSKDPRRKFIWEEMSYLERWWRDASPS 103 (1050)
T ss_pred ceEEEEeCCCCCCHHHcCcHHHHHHHHHHHHHHHHHHHHHhCcCcceeeccHHHHHHHHHhcCHH
Confidence 57899999999999999999999999999999999999999999999999999999999887664
No 3
>KOG1958|consensus
Probab=99.89 E-value=9.4e-24 Score=176.80 Aligned_cols=69 Identities=61% Similarity=1.176 Sum_probs=64.1
Q ss_pred cccccceEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEEhhhHHHHHHHHhhcccc
Q psy2170 3 KKELLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKL 71 (78)
Q Consensus 3 ~~~~~~~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff~~Ww~~q~~~ 71 (78)
.++..++|++|||||+|+||++||++||..+.++||++++..|.+||++||||+||+||++||+.++..
T Consensus 158 ~~~~~LkvfVvPHSHnDPGW~~Tf~~Yy~~~tr~Il~~~v~~L~e~~~~~FIwaEiS~~~~ww~~~~~~ 226 (1129)
T KOG1958|consen 158 DKEPFLKVFVVPHSHNDPGWIKTFEEYYQRQTRHILNNMVNKLSEDPRMKFIWAEISFLERWWDDASPT 226 (1129)
T ss_pred ccccceEEEEeeccCCCcchhhhHHHHHHHHHHHHHHHHHHHhhhCcccchhhhhHHHHHHhhhhcChH
Confidence 445568899999999999999999999999999999999999999999999999999999999887643
No 4
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=99.79 E-value=7.7e-20 Score=131.85 Aligned_cols=63 Identities=32% Similarity=0.606 Sum_probs=52.9
Q ss_pred eEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEEhhhHHHHHHHHhhccccc
Q psy2170 9 IVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKLR 72 (78)
Q Consensus 9 ~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff~~Ww~~q~~~~ 72 (78)
+||+|||||+|+||+.|+++| ...+.++++++++.|++||++||+++|+.+|+.||+.++..+
T Consensus 1 ~v~~i~HsH~D~~W~~t~~~~-~~~~~~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~~p~~~ 63 (275)
T PF01074_consen 1 TVHVIPHSHWDRGWLWTFEEY-RRYLVNILDSVLDLLEEDPDFRFIDGQTAYLEDYLEDAPEEF 63 (275)
T ss_dssp EEEEEEEEB--SSSSS-HHHH-HHHHHHHHHHHHHHHHH-TT--EECTBCHHHHHHHHCSGHHH
T ss_pred CEEEccccccchhhcccHHHH-HHHHHHHHHHHHHHHHhCCcceEeechhHHHHHHHHhCCHHH
Confidence 599999999999999999999 568889999999999999999999999999999999877653
No 5
>PRK09819 alpha-mannosidase; Provisional
Probab=99.48 E-value=5.7e-14 Score=116.41 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=56.5
Q ss_pred ccceEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEE--hhhHHHHHHHHhhcccc
Q psy2170 6 LLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFI--WSEISFFSQWWERSRKL 71 (78)
Q Consensus 6 ~~~~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~--~~Ei~ff~~Ww~~q~~~ 71 (78)
|+++||+|||||+|+||+.|+++... .+...+++++..|+++|+++|+ .+++++|+.||+..+..
T Consensus 2 ~~~~v~~v~HtH~D~~Wl~~~~~~~~-~~~~~~~~vl~lle~~p~~~f~~~d~q~~~l~~~~~~~Pe~ 68 (875)
T PRK09819 2 AKSKVHIVPHMHWDREWYFTTERSRI-LLVNNMEEILDRLEQDNDYKYYVLDGQTSLLEDYLAVKPED 68 (875)
T ss_pred CceEEEEeCCCCCChhhcCChHHhHH-HHHHHHHHHHHHHHhCCCcceEEEchhHHHHHHHHHhChHH
Confidence 45679999999999999999999976 6668999999999999999984 57999999999655443
No 6
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=95.98 E-value=0.00089 Score=57.45 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=35.1
Q ss_pred eEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCC
Q psy2170 9 IVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHP 49 (78)
Q Consensus 9 ~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp 49 (78)
.+|+++|||||++|+.+.+.+..... ..++++++.++++|
T Consensus 5 ~~~ii~~~~wdrew~~~~e~~~~~~~-~~~~~i~~~~~~~~ 44 (943)
T COG0383 5 KVHIISHSHWDREWYFTSESHRILLD-ELFEEIIELLQKDP 44 (943)
T ss_pred ccccchhhhhhhhceeeccceEeech-hhhhhhhhccccCc
Confidence 35999999999999999999977554 55999999999999
No 7
>KOG4342|consensus
Probab=76.71 E-value=7.2 Score=34.09 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=41.6
Q ss_pred ccceEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEEhhhH
Q psy2170 6 LLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEI 58 (78)
Q Consensus 6 ~~~~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~~~Ei 58 (78)
-+.+||.|-|-|-|.-|+-.|-|-....+ .-.-+-+..+..+|++.|.-+..
T Consensus 279 s~~nv~aiGhCHIDTAWLWPFaETrRKiv-RSW~tq~~lMdR~PEy~FvcSQA 330 (1078)
T KOG4342|consen 279 SQHNVHAIGHCHIDTAWLWPFAETRRKIV-RSWVTQLQLMDRNPEYIFVCSQA 330 (1078)
T ss_pred cccceeeeccccccchhhcChHHHHHHHH-HHHHHHHhHHhhCcceeEehhhH
Confidence 36789999999999999999988765444 33446777888999999987644
No 8
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=67.88 E-value=3.4 Score=27.62 Aligned_cols=29 Identities=7% Similarity=0.221 Sum_probs=25.3
Q ss_pred hHhhHHHHHHHHHhcCCCCeEEhhhHHHH
Q psy2170 33 QTRMILNNMVEKLVQHPNMTFIWSEISFF 61 (78)
Q Consensus 33 ~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff 61 (78)
....++++++..|.-|+++.|..+|+.=+
T Consensus 36 TAa~VI~~~i~~L~Ld~tk~YvLaEVkEs 64 (105)
T cd01779 36 TAADVIDDVIASLQLDGTKCYVLAEVKES 64 (105)
T ss_pred cHHHHHHHHHHHhCcCccccEEEEEeecc
Confidence 35679999999999999999999998643
No 9
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=56.82 E-value=3.8 Score=25.16 Aligned_cols=9 Identities=44% Similarity=0.545 Sum_probs=7.1
Q ss_pred EEeeCccCC
Q psy2170 11 FLVPHSHND 19 (78)
Q Consensus 11 hlVPHSH~D 19 (78)
-++||+||=
T Consensus 4 ~v~PH~HC~ 12 (64)
T COG4068 4 GVVPHRHCV 12 (64)
T ss_pred CCCCCcccc
Confidence 468999983
No 10
>PF03008 DUF234: Archaea bacterial proteins of unknown function; InterPro: IPR004256 This represents a C-terminal domain of unknown function, usually fused to a prokaryotic putative DEXX-box ATPase domain (IPR011579 from INTERPRO) [].
Probab=50.27 E-value=9 Score=24.06 Aligned_cols=42 Identities=21% Similarity=0.558 Sum_probs=27.9
Q ss_pred hHHHHHHHhHhhHHHHHHHHHhcCCCCeEEhhhHHHHHHHHhhcc
Q psy2170 25 TFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSR 69 (78)
Q Consensus 25 T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff~~Ww~~q~ 69 (78)
.+++|.......++...+..+.......|-..+++ +||+.+.
T Consensus 27 ~l~~y~g~~fE~i~r~~l~~~~~~~~lp~~~~~iG---~wW~~~~ 68 (100)
T PF03008_consen 27 ELNQYMGFAFEEICREYLRRLNRAGKLPFPFSEIG---RWWDKNE 68 (100)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhcccCCCCceeecC---CeeCCCc
Confidence 45666655566677777777776666666666666 8997544
No 11
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=35.02 E-value=18 Score=29.01 Aligned_cols=17 Identities=35% Similarity=0.950 Sum_probs=11.0
Q ss_pred HHHHHHHhhcc-cccccc
Q psy2170 59 SFFSQWWERSR-KLRIIP 75 (78)
Q Consensus 59 ~ff~~Ww~~q~-~~~~~~ 75 (78)
.=|+.||+.|= .-|.+|
T Consensus 422 ~TFe~WW~~Ql~~nrtip 439 (445)
T PF13608_consen 422 VTFEDWWDNQLQQNRTIP 439 (445)
T ss_pred CCHHHHHHHHHHcCCccC
Confidence 34899998873 335554
No 12
>PF11225 DUF3024: Protein of unknown function (DUF3024); InterPro: IPR021388 This entry is represented by Bacteriophage 933W, L0084. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=34.62 E-value=32 Score=19.88 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhcCCCCeE
Q psy2170 36 MILNNMVEKLVQHPNMTF 53 (78)
Q Consensus 36 ~Ildsvv~~L~~dp~rrF 53 (78)
..|+.++..+++||.+-|
T Consensus 39 ~~L~~~l~~i~~Dp~~~F 56 (57)
T PF11225_consen 39 KDLEALLREIEKDPERCF 56 (57)
T ss_pred CCHHHHHHHHhhCCccCc
Confidence 568899999999998766
No 13
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=34.17 E-value=41 Score=15.12 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=9.1
Q ss_pred HHHHHHHHHhcC
Q psy2170 37 ILNNMVEKLVQH 48 (78)
Q Consensus 37 Ildsvv~~L~~d 48 (78)
++||++++|+.-
T Consensus 2 vmdsllealqtg 13 (15)
T PF06345_consen 2 VMDSLLEALQTG 13 (15)
T ss_dssp HHHHHHHHHHHS
T ss_pred cHHHHHHHHHcc
Confidence 578899988753
No 14
>COG3082 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.03 E-value=53 Score=20.63 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.1
Q ss_pred HHHHHHhHhhHHHHHHHHHhcCCC
Q psy2170 27 ESYYHSQTRMILNNMVEKLVQHPN 50 (78)
Q Consensus 27 eeYy~~~v~~Ildsvv~~L~~dp~ 50 (78)
..|-+.++..||+.++..|++...
T Consensus 5 SkYsDe~ve~il~e~iaVLeKH~a 28 (74)
T COG3082 5 SKYSDEQVEQILNELIAVLEKHKA 28 (74)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCC
Confidence 357778999999999999998754
No 15
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=29.75 E-value=26 Score=20.08 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=12.6
Q ss_pred EEEeeCccCCchhhhhHH
Q psy2170 10 VFLVPHSHNDPGWLKTFE 27 (78)
Q Consensus 10 VhlVPHSH~D~GWl~T~e 27 (78)
.|++| |.|-||.-..+
T Consensus 1 yhV~p--~~~~~W~v~~e 16 (62)
T PF09954_consen 1 YHVVP--REDGGWAVKKE 16 (62)
T ss_pred CEEEe--cCCCCceEEeC
Confidence 48999 77889987655
No 16
>PRK13689 hypothetical protein; Provisional
Probab=28.91 E-value=62 Score=20.44 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=19.9
Q ss_pred HHHHHHhHhhHHHHHHHHHhcCCC
Q psy2170 27 ESYYHSQTRMILNNMVEKLVQHPN 50 (78)
Q Consensus 27 eeYy~~~v~~Ildsvv~~L~~dp~ 50 (78)
..|-..++..||+.++..|+++..
T Consensus 5 SKYsd~qvE~il~el~~VLeKH~A 28 (75)
T PRK13689 5 SKYSDEQVEQLLAELLAVLEKHKA 28 (75)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCC
Confidence 356678899999999999999754
No 17
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=27.81 E-value=91 Score=20.48 Aligned_cols=42 Identities=21% Similarity=0.477 Sum_probs=26.3
Q ss_pred EEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEEhhhHH
Q psy2170 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEIS 59 (78)
Q Consensus 10 VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~~~Ei~ 59 (78)
|.++||++++.- ++ + ......|..+...+...| ..|+|++.+
T Consensus 25 i~~l~~~~d~~~-----e~-~-~~~~~~l~~vAk~~kgk~-i~Fv~vd~~ 66 (130)
T cd02983 25 IAFLPHILDCQA-----SC-R-NKYLEILKSVAEKFKKKP-WGWLWTEAG 66 (130)
T ss_pred EEEcCccccCCH-----HH-H-HHHHHHHHHHHHHhcCCc-EEEEEEeCc
Confidence 667899886432 22 2 233356777777776554 679997653
No 18
>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].
Probab=25.26 E-value=31 Score=24.61 Aligned_cols=15 Identities=47% Similarity=1.037 Sum_probs=11.4
Q ss_pred HHHHHHHhhcccccc
Q psy2170 59 SFFSQWWERSRKLRI 73 (78)
Q Consensus 59 ~ff~~Ww~~q~~~~~ 73 (78)
-||.+||-+|+-.+|
T Consensus 83 P~~~~WW~Q~ts~~i 97 (159)
T PF12129_consen 83 PFFSQWWIQQTSPWI 97 (159)
T ss_pred HHHHHHHHHHhhHHH
Confidence 689999988865543
No 19
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=24.51 E-value=1.4e+02 Score=19.35 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCchhhhhHHHHHHHhHhhHHH---HHHHHHhcCCCC
Q psy2170 18 NDPGWLKTFESYYHSQTRMILN---NMVEKLVQHPNM 51 (78)
Q Consensus 18 ~D~GWl~T~eeYy~~~v~~Ild---svv~~L~~dp~r 51 (78)
+|+.=+.||...|. +|+.||| .++.+..+|-.-
T Consensus 3 ~d~~~~~tf~~sF~-qVQ~iLDqNR~LI~eINqNHeS 38 (87)
T PF07011_consen 3 GDGKVWQTFQKSFV-QVQSILDQNRLLINEINQNHES 38 (87)
T ss_pred ccHHHHHHHHHHHH-HHHHHHHHhHHHHHHHhhcccc
Confidence 56666789999997 8999998 567777666443
No 20
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=24.45 E-value=65 Score=23.31 Aligned_cols=33 Identities=15% Similarity=0.387 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCCCeEEhhhH---HHHHHHHhhcc
Q psy2170 37 ILNNMVEKLVQHPNMTFIWSEI---SFFSQWWERSR 69 (78)
Q Consensus 37 Ildsvv~~L~~dp~rrF~~~Ei---~ff~~Ww~~q~ 69 (78)
+.+-+...|..||+.|....|+ .||..||+...
T Consensus 287 ~~~li~~~L~~dP~~R~t~~eiL~~~~~~~~~~~~~ 322 (353)
T cd07850 287 ARDLLSKMLVIDPEKRISVDDALQHPYINVWYDPSE 322 (353)
T ss_pred HHHHHHHHcCCChhhCcCHHHHhcChhHhhccCCcc
Confidence 3445556677899999999988 69999998543
No 21
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=24.04 E-value=35 Score=24.06 Aligned_cols=12 Identities=42% Similarity=0.376 Sum_probs=10.2
Q ss_pred eEEEeeCccCCc
Q psy2170 9 IVFLVPHSHNDP 20 (78)
Q Consensus 9 ~VhlVPHSH~D~ 20 (78)
..|.+||||+|-
T Consensus 147 d~F~~PhSR~~~ 158 (175)
T cd03131 147 DGFDVPHSRYAE 158 (175)
T ss_pred CceeecCccccc
Confidence 589999999865
No 22
>PF06489 Orthopox_A49R: Orthopoxvirus A49R protein; InterPro: IPR009473 This family consists of several Orthopoxvirus A49 proteins. The function of this family is unknown.
Probab=21.36 E-value=70 Score=22.58 Aligned_cols=35 Identities=20% Similarity=0.583 Sum_probs=26.2
Q ss_pred hHHHHHHHhHhhHHHHHH--HHHhcCCCCeEEhhhHH
Q psy2170 25 TFESYYHSQTRMILNNMV--EKLVQHPNMTFIWSEIS 59 (78)
Q Consensus 25 T~eeYy~~~v~~Ildsvv--~~L~~dp~rrF~~~Ei~ 59 (78)
-|-.+|...+.+|++.++ .-...+|++|-+++|+.
T Consensus 97 ~~~~FY~~~~~~I~~~II~LKYIM~~~~FK~~Y~~V~ 133 (162)
T PF06489_consen 97 IFMSFYKNNVSNIVDAIIILKYIMNNPDFKTIYKEVV 133 (162)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 345667777888888654 56778999999999873
Done!