RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2170
(78 letters)
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase,
golgi apparatus, membrane, signal-anchor, transmembrane;
HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1
b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A*
3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A*
1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A*
2alw_A* 2f18_A* ...
Length = 1045
Score = 90.0 bits (222), Expect = 4e-23
Identities = 31/57 (54%), Positives = 44/57 (77%)
Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
VF+VPHSHNDPGW++TFE YY T+ IL+N + L +P M FIW+EIS+F++++
Sbjct: 83 VFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYH 139
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
c.6.2.1
Length = 298
Score = 75.1 bits (184), Expect = 3e-18
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 8/66 (12%)
Query: 10 VFLVPHSHNDPGWLKTFESYY--------HSQTRMILNNMVEKLVQHPNMTFIWSEISFF 61
V LVPH+H+D GWLKT + Y+ + + IL++++ L+ +P FI+ EI+FF
Sbjct: 16 VHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLANPTRRFIYVEIAFF 75
Query: 62 SQWWER 67
S+WW +
Sbjct: 76 SRWWRQ 81
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase;
1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Length = 923
Score = 58.7 bits (141), Expect = 4e-12
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEI-SFFSQWWERS 68
V ++ HSH D W +E ++ ++++++E P+ + + + +
Sbjct: 28 VHIISHSHWDREWYMAYEQHHMRLIN-LIDDLLEVFQTDPDFHSFHLDGQTIILDDYLKV 86
Query: 69 R 69
R
Sbjct: 87 R 87
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.55A {Enterococcus faecalis}
Length = 899
Score = 56.4 bits (135), Expect = 3e-11
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEI-SFFSQWWERS 68
V++V HSH D W +E ++ +++N+++ + P + + + +
Sbjct: 9 VYIVSHSHWDREWYLPYEEHHMRLIE-LVDNVLDLIENDPEFNSFHLDGQTIILDDYLQV 67
Query: 69 R 69
R
Sbjct: 68 R 68
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 28.1 bits (63), Expect = 0.23
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 37 ILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKL--RIIPIVA 78
I ++ + + + HP+ F+ +IS S+W E K ++P+VA
Sbjct: 348 IGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 391
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 27.5 bits (62), Expect = 0.35
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 41 MVEKLVQHPNMTFIWS 56
+ +KL N+ I +
Sbjct: 185 LQDKLRSLKNVDIILN 200
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 26.9 bits (60), Expect = 0.64
Identities = 3/16 (18%), Positives = 8/16 (50%)
Query: 41 MVEKLVQHPNMTFIWS 56
+ +K+ N+ I +
Sbjct: 396 LQDKVRSLKNVDIILN 411
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 26.3 bits (59), Expect = 0.80
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 41 MVEKLVQHPNMTFIW 55
VE + + PN+ F+
Sbjct: 195 YVETVKKKPNVEFVL 209
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 25.6 bits (57), Expect = 1.8
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 41 MVEKLVQHPNMTFIW 55
+ +P M FIW
Sbjct: 193 AQARAFANPKMKFIW 207
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 25.2 bits (56), Expect = 2.1
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 41 MVEKLVQHPNMTFIW 55
VEK+ ++ + I
Sbjct: 188 TVEKVKKNEKIELIT 202
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 25.2 bits (56), Expect = 2.2
Identities = 2/15 (13%), Positives = 6/15 (40%)
Query: 41 MVEKLVQHPNMTFIW 55
+E + + F+
Sbjct: 184 TLEHAKNNDKIEFLT 198
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 25.2 bits (56), Expect = 2.5
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 41 MVEKLVQHPNMTFIW 55
M ++ + +P + IW
Sbjct: 200 MQQRALSNPKIDVIW 214
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 25.2 bits (56), Expect = 2.6
Identities = 2/15 (13%), Positives = 8/15 (53%)
Query: 41 MVEKLVQHPNMTFIW 55
M+++ + + F+
Sbjct: 196 MLDRARNNDKIRFLT 210
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 24.8 bits (55), Expect = 2.8
Identities = 1/15 (6%), Positives = 8/15 (53%)
Query: 41 MVEKLVQHPNMTFIW 55
M ++ ++ + ++
Sbjct: 214 MQKRAEKNEKIEILY 228
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure,
structural genomics, PSI-2, protein structure
initiative; 1.80A {Methanococcus maripaludis S2} PDB:
3c0b_A
Length = 334
Score = 24.9 bits (54), Expect = 3.5
Identities = 5/41 (12%), Positives = 15/41 (36%)
Query: 14 PHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFI 54
++ ++YY +IL N+ ++ + +
Sbjct: 240 LDQISEIDAENIAKNYYELWKELILENVENVAEKYGSKKVV 280
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 24.7 bits (54), Expect = 3.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 42 VEKLVQHPNMTFIWSEISFFSQWWERSRK 70
+ + + HP+ F+ +IS S+W E K
Sbjct: 38 ISRFLNHPHFHFVEGDISIHSEWIEYHVK 66
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 24.2 bits (53), Expect = 5.3
Identities = 4/35 (11%), Positives = 14/35 (40%)
Query: 32 SQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
+ + + + ++ + I SE + + W +
Sbjct: 2 ASEDKFESVLSTRYCKNSPLVSILSETNKATLWRQ 36
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A
{Bacillus subtilis}
Length = 552
Score = 24.3 bits (52), Expect = 5.9
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 35 RMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
RM+ NN+ ++ + P ++ I ++ W+
Sbjct: 28 RMLRNNLDPEVAEKPEDLIVYGGIGKAARDWD 59
>1x87_A Urocanase protein; structural genomics, protein STR initiative,
MCSG, PSI, midwest center for structural genomi; HET:
MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP:
e.51.1.1
Length = 551
Score = 24.3 bits (52), Expect = 6.0
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 35 RMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
RM+ NN+ + + P+ ++ I ++ WE
Sbjct: 27 RMLNNNLHPDVAERPDELIVYGGIGKAARNWE 58
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 24.0 bits (52), Expect = 6.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 42 VEKLVQHPNMTFIWSEISFFSQWWE 66
+ LV+H M F +I+ +W E
Sbjct: 62 LGDLVKHERMHFFEGDITINKEWVE 86
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 23.9 bits (51), Expect = 7.5
Identities = 4/15 (26%), Positives = 10/15 (66%)
Query: 61 FSQWWERSRKLRIIP 75
F W ++++ +I+P
Sbjct: 350 FISWIDKAKAYKIVP 364
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.136 0.446
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,250,760
Number of extensions: 55231
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 25
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.0 bits)