RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2170
         (78 letters)



>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 381

 Score = 76.2 bits (187), Expect = 6e-19
 Identities = 31/60 (51%), Positives = 44/60 (73%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSR 69
           VF+VPHSHNDPGW++TFE YY   T+ IL+N +  L  +P M FIW+EIS+F++++    
Sbjct: 53  VFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLG 112


>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
          {Cow (Bos taurus) [TaxId: 9913]}
          Length = 330

 Score = 73.9 bits (181), Expect = 3e-18
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 9/76 (11%)

Query: 2  VKKELLTIVFLVPHSHNDPGWLKTFESYY--------HSQTRMILNNMVEKLVQHPNMTF 53
          VK ++L  V LVPH+H+D GWLKT + Y+         +  + IL++++  L+ +P   F
Sbjct: 8  VKPDMLN-VHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLANPTRRF 66

Query: 54 IWSEISFFSQWWERSR 69
          I+ EI+FFS+WW +  
Sbjct: 67 IYVEIAFFSRWWRQQT 82


>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal
          domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 310

 Score = 43.5 bits (102), Expect = 3e-07
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 10 VFLVPHSHNDPG-WLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERS 68
               H+H   G +   FE  Y+   R  +  + E     P M           +W E +
Sbjct: 6  FIFGIHNHQPLGNFGWVFEEAYNRSYRPFMEILEE----FPEMKVNVHFSGPLLEWIEEN 61

Query: 69 R 69
          +
Sbjct: 62 K 62


>d2v3ia1 b.29.1.10 (A:1-434) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Trichoderma reesei, Cel7A
           [TaxId: 51453]}
          Length = 434

 Score = 24.8 bits (54), Expect = 1.4
 Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 2/19 (10%)

Query: 42  VEKLVQHPNMTFIWSEISF 60
           VE   Q PN    +S I F
Sbjct: 407 VES--QSPNAKVTFSNIKF 423


>d1q9ha_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Talaromyces emersonii [TaxId:
           68825]}
          Length = 435

 Score = 24.4 bits (53), Expect = 1.5
 Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 2/19 (10%)

Query: 42  VEKLVQHPNMTFIWSEISF 60
           VE   Q PN    +S I F
Sbjct: 411 VES--QSPNSYVTYSNIKF 427


>d1gpia_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Phanerochaete chrysosporium,
           Cel7d [TaxId: 5306]}
          Length = 431

 Score = 24.4 bits (53), Expect = 1.6
 Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 2/19 (10%)

Query: 42  VEKLVQHPNMTFIWSEISF 60
           VE   Q PN   ++S I F
Sbjct: 404 VES--QVPNSQVVFSNIKF 420


>d1ojja_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Humicola insolens, Cel7b [TaxId:
           34413]}
          Length = 399

 Score = 24.4 bits (53), Expect = 1.9
 Identities = 1/19 (5%), Positives = 7/19 (36%), Gaps = 2/19 (10%)

Query: 42  VEKLVQHPNMTFIWSEISF 60
           + +    P     ++ + +
Sbjct: 375 IVQ--VEPFPEVTYTNLRW 391


>d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId:
           5507]}
          Length = 400

 Score = 24.4 bits (53), Expect = 2.0
 Identities = 5/19 (26%), Positives = 7/19 (36%), Gaps = 2/19 (10%)

Query: 42  VEKLVQHPNMTFIWSEISF 60
           + K    PN    +S I  
Sbjct: 375 IVK--VQPNPEVTFSNIRI 391


>d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Trichoderma reesei,
           Endoglucanase I [TaxId: 51453]}
          Length = 371

 Score = 24.0 bits (52), Expect = 2.2
 Identities = 4/19 (21%), Positives = 9/19 (47%), Gaps = 2/19 (10%)

Query: 42  VEKLVQHPNMTFIWSEISF 60
           +     +PN   ++S I +
Sbjct: 348 ILA--NNPNTHVVFSNIRW 364


>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 545

 Score = 22.4 bits (48), Expect = 7.6
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 35 RMILNNMVEKLVQHP 49
          RM+ NN+   + + P
Sbjct: 21 RMLNNNLHPDVAERP 35


>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos
          taurus) [TaxId: 9913]}
          Length = 208

 Score = 22.6 bits (48), Expect = 7.8
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 18 NDPGWLKTFESYYHSQTRMILNNMVEKLVQHP 49
          +DP + K  E ++     ++ + +VE L    
Sbjct: 5  DDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQ 36


>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas
          putida [TaxId: 303]}
          Length = 554

 Score = 22.5 bits (48), Expect = 8.2
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query: 35 RMILNNMVEKLVQHP 49
          RM++NN+  ++ ++P
Sbjct: 29 RMLMNNLDPQVAENP 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.136    0.446 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 324,764
Number of extensions: 11839
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 22
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.3 bits)