BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2177
(677 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 539 bits (1388), Expect = e-153, Method: Compositional matrix adjust.
Identities = 253/361 (70%), Positives = 299/361 (82%)
Query: 52 FTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNT 111
F + MF+GQL T+QVFPYP VL E+Q+ LK LV+PV++FF+EVNDP KND+LE VE T
Sbjct: 5 FAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETT 64
Query: 112 LEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLV 171
+GL +LGAF LQVP +LGG+GL NTQYAR+VEIVG +DL VGI LGAHQSIGFKGILL
Sbjct: 65 WQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLF 124
Query: 172 GNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN 231
G QK KYLP++++G+ AAFCLTEP+SGSDA SI+T AV SP GK+Y LNGSK+WISN
Sbjct: 125 GTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISN 184
Query: 232 GGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYY 291
GG A+I TVFA+TPV D TG V +K+TAF+VER FGG+T GPPEKKMGIKASNTAEV++
Sbjct: 185 GGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFF 244
Query: 292 EDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRR 351
+ V+VP ENVLG VG+GFKVAM ILNNGRFGMAAALAGTMR + KAVDHAT R QFG +
Sbjct: 245 DGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEK 304
Query: 352 IDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDE 411
I +FG IQEKLARM +L YVTES+AYM+S NMD G+ D+ +EAAISK+F SEAAW VTDE
Sbjct: 305 IHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDE 364
Query: 412 A 412
Sbjct: 365 C 365
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 93/150 (62%)
Query: 508 LEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESG 567
L+G G L L A KNP + GL++GE K+ + GL + SL +VH L+ SG
Sbjct: 406 LQGCMDKGKELSGLGSALKNPFGNAGLLLGEAGKQLRRRAGLGSGLSLSGLVHPELSRSG 465
Query: 568 VLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNL 627
L +++ F VE+ L+K+ KG+V EQFLL RLA A D Y M VVLSRA+RSL++
Sbjct: 466 ELAVRALEQFATVVEAKLIKHKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGH 525
Query: 628 PSASHEQLLAELWCYEAAERVSQNLGALNS 657
P+A HE++L + WC EAA R+ + + AL S
Sbjct: 526 PTAQHEKMLCDTWCIEAAARIREGMAALQS 555
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 53/68 (77%)
Query: 448 FTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNT 507
F + MF+GQL T+QVFPYP VL E+Q+ LK LV+PV++FF+EVNDP KND+LE VE T
Sbjct: 5 FAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETT 64
Query: 508 LEGIQYAG 515
+G++ G
Sbjct: 65 WQGLKELG 72
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 538 bits (1386), Expect = e-153, Method: Compositional matrix adjust.
Identities = 253/361 (70%), Positives = 299/361 (82%)
Query: 52 FTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNT 111
F + MF+GQL T+QVFPYP VL E+Q+ LK LV+PV++FF+EVNDP KND+LE VE T
Sbjct: 25 FAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETT 84
Query: 112 LEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLV 171
+GL +LGAF LQVP +LGG+GL NTQYAR+VEIVG +DL VGI LGAHQSIGFKGILL
Sbjct: 85 WQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLF 144
Query: 172 GNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN 231
G QK KYLP++++G+ AAFCLTEP+SGSDA SI+T AV SP GK+Y LNGSK+WISN
Sbjct: 145 GTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISN 204
Query: 232 GGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYY 291
GG A+I TVFA+TPV D TG V +K+TAF+VER FGG+T GPPEKKMGIKASNTAEV++
Sbjct: 205 GGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFF 264
Query: 292 EDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRR 351
+ V+VP ENVLG VG+GFKVAM ILNNGRFGMAAALAGTMR + KAVDHAT R QFG +
Sbjct: 265 DGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEK 324
Query: 352 IDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDE 411
I +FG IQEKLARM +L YVTES+AYM+S NMD G+ D+ +EAAISK+F SEAAW VTDE
Sbjct: 325 IHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDE 384
Query: 412 A 412
Sbjct: 385 C 385
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 93/150 (62%)
Query: 508 LEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESG 567
L+G G L L A KNP + GL++GE K+ + GL + SL +VH L+ SG
Sbjct: 426 LQGCMDKGKELSGLGSALKNPFGNAGLLLGEAGKQLRRRAGLGSGLSLSGLVHPELSRSG 485
Query: 568 VLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNL 627
L +++ F VE+ L+K+ KG+V EQFLL RLA A D Y M VVLSRA+RSL++
Sbjct: 486 ELAVRALEQFATVVEAKLIKHKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGH 545
Query: 628 PSASHEQLLAELWCYEAAERVSQNLGALNS 657
P+A HE++L + WC EAA R+ + + AL S
Sbjct: 546 PTAQHEKMLCDTWCIEAAARIREGMAALQS 575
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 53/68 (77%)
Query: 448 FTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNT 507
F + MF+GQL T+QVFPYP VL E+Q+ LK LV+PV++FF+EVNDP KND+LE VE T
Sbjct: 25 FAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETT 84
Query: 508 LEGIQYAG 515
+G++ G
Sbjct: 85 WQGLKELG 92
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 154/357 (43%), Positives = 201/357 (56%), Gaps = 34/357 (9%)
Query: 75 EDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLE-------GLWDLGAFSLQVPQ 127
ED +++K + F + PL LE +E LE +LG ++ VP+
Sbjct: 26 EDFDESVKEIARTTRTFVEREVLPL----LERMEHGELELNVPLMRKAGELGLLAIDVPE 81
Query: 128 DLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTG 187
+ GGL L + E + G+ + GAH SIG ++ G EQK KYLP++++G
Sbjct: 82 EYGGLDLPKVISTVVAEELSGSG-GFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASG 140
Query: 188 KEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVK 247
+ AA+CLTEP SGSDA + KTRA LS DGKHYILNG K WISN GFA + TVFA+
Sbjct: 141 EWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDG- 199
Query: 248 DEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGN 307
+ TAF+VER G++ GP EKKMGIKAS+T +V EDVKVPVENVLG +G
Sbjct: 200 --------EHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGK 251
Query: 308 GFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMAL 367
G K+A +LN GR+ + A G + + + +ATQRVQFGR I FG IQ+KL MA
Sbjct: 252 GHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMAS 311
Query: 368 LHYVTESLAYMISGNMDN-------------GSQDYHLEAAISKVFASEAAWYVTDE 411
Y ES Y G +D G ++Y +EA+I KV SE YV DE
Sbjct: 312 RIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDE 368
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 587 KYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATR 621
KYG+GV EEQ +L +A D Y L RA R
Sbjct: 467 KYGQGVEEEQEVLGAVADILIDAYAAESALLRARR 501
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 167/316 (52%), Gaps = 34/316 (10%)
Query: 117 DLGAFSLQVPQDLGGLGLTNTQYARMVEI---VGGNDLAVGIVLGAHQSIGFKGILLVGN 173
+LG VP++ GG+GL A + E GG I GAH IG I+L GN
Sbjct: 76 ELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAGG----FAITHGAHVGIGSLPIVLFGN 131
Query: 174 PEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGG 233
EQK KYLP ++TG++ AA+ LTEP SGSDA KT A L+ +G HY+LNG K WI+N
Sbjct: 132 EEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSA 191
Query: 234 FAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYED 293
FA++ V+A+ + +AFIVE+ + GV++ P EKK GIK S+T + ED
Sbjct: 192 FADVFIVYAKID---------GEHFSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILED 242
Query: 294 VKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRID 353
VP EN+LG +G G +A ILN GR+ + G+ + + + +A QR QF + I
Sbjct: 243 ALVPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIA 302
Query: 354 SFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQ------------------DYHLEAA 395
F IQEKLA A Y ES Y G ++ +Y +E +
Sbjct: 303 RFPLIQEKLANXAAKTYAAESSVYRTVGLFESRXSTLSEEEVKDGKAVAASIAEYAIECS 362
Query: 396 ISKVFASEAAWYVTDE 411
++KVF SE Y DE
Sbjct: 363 LNKVFGSEVLDYTVDE 378
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 185 bits (470), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 182/346 (52%), Gaps = 23/346 (6%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLKN--DSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
LTE+Q + L +F EV P+ D E V +E L ++G + +P++ G
Sbjct: 5 LTEEQ----RQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
Query: 131 GLGLTNTQYARMVEIVGGNDLA---VGI-VLGAHQSIGFKGILLVGNPEQKAKYLPRVST 186
G+GL + E++ G +LA +GI + +G +LL G EQK ++L ++
Sbjct: 61 GMGLK-----MLDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTE 115
Query: 187 GKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPV 246
AAF L+EP +GSDA ++KTRA+ G HY+LNG+K+WISNGG AE + VFA
Sbjct: 116 KPALAAFALSEPGNGSDAAALKTRAIRQ--GDHYVLNGTKMWISNGGEAEWVVVFATVNP 173
Query: 247 KDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVG 306
+ G V A +VER G + KMG +AS T E+ +EDVKVPVEN LG G
Sbjct: 174 ELRHKG-----VVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEG 228
Query: 307 NGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMA 366
GFK+AMQ LN R +AA G R +A +A +R FG I +F IQ KL M
Sbjct: 229 EGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDML 288
Query: 367 LLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEA 412
+ Y + D G H +AI+K +ASE A+ ++A
Sbjct: 289 IGIETARMYTYYAAWLADQGLPHAH-ASAIAKAYASEIAFEAANQA 333
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/274 (41%), Positives = 152/274 (55%), Gaps = 7/274 (2%)
Query: 139 YARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEP 198
Y VE + D V I L A S+ I G QK K+L + G + AF LTEP
Sbjct: 72 YILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEP 131
Query: 199 ASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKV 258
+G+DA +T A + DG Y LNGSKI+I+NGG A+I VFA T D+ G +
Sbjct: 132 NAGTDASGQQTIATKNDDGT-YTLNGSKIFITNGGAADIYIVFAMT---DKSKGN--HGI 185
Query: 259 TAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNN 318
TAFI+E G T G E KMGI S T E+ ++DVKVP EN+LG G GFK+AM L+
Sbjct: 186 TAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDG 245
Query: 319 GRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYM 378
GR G+AA G + AV+++ QRVQFG+ + F +I KLA M + +L Y
Sbjct: 246 GRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYK 305
Query: 379 ISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEA 412
+ G + + ++AAI+K AS+ A VT EA
Sbjct: 306 AACKKQEG-KPFTVDAAIAKRVASDVAMRVTTEA 338
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 184/337 (54%), Gaps = 11/337 (3%)
Query: 78 SDTLKMLVDPVTKFFDEVNDPLKN--DSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLT 135
+D M+ V KF E PL + D +E + ++GL+ G ++V + GG G +
Sbjct: 30 TDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGAS 89
Query: 136 NTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCL 195
++E + D +V + ++ I G EQKA YLP+++T K +FCL
Sbjct: 90 FLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCL 148
Query: 196 TEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVV 255
+E +GSD+ ++KTRA +G +Y+LNGSK+WIS+ A + V A D G
Sbjct: 149 SEAGAGSDSFALKTRA--DKEGDYYVLNGSKMWISSAEHAGLFLVMANV---DPTIG--Y 201
Query: 256 DKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQI 315
+T+F+V+R G+ G PE K+G++AS+T + +E+VKVP N+LG +G+G+K A+
Sbjct: 202 KGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGS 261
Query: 316 LNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESL 375
LN GR G+AA + G + + + +R+QFG+R+ F +Q ++A +A L
Sbjct: 262 LNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLL 321
Query: 376 AYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEA 412
Y + ++ G + + EA+++K +ASE A T +
Sbjct: 322 TYNAARLLEAG-KPFIKEASMAKYYASEIAGQTTSKC 357
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 172 bits (435), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 164/296 (55%), Gaps = 8/296 (2%)
Query: 117 DLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQ 176
+LG ++ VP++L G GL Y+ +E + + G+++ + S+ IL G+ +Q
Sbjct: 52 ELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQ 111
Query: 177 KAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAE 236
K +++ + G + F L+EP +GSDAG+ T A +G ++LNG+K WI+N A
Sbjct: 112 KQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTA--REEGDSWVLNGTKAWITNSWEAS 169
Query: 237 IMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKV 296
VFA T + G ++AF+V G+T G E K+GI+AS+TA + +ED ++
Sbjct: 170 ATVVFASTDRSRQNKG-----ISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRI 224
Query: 297 PVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFG 356
P EN+LG G GFK+AMQ L+ GR G+A+ G ++ AV +A R FG +
Sbjct: 225 PKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQ 284
Query: 357 TIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEA 412
IQ KLA MAL L + + DN + + E+A++K+ ASEAA ++ +A
Sbjct: 285 NIQFKLADMALALESARLLTWRAAMLKDN-KKPFTKESAMAKLAASEAATAISHQA 339
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 164/295 (55%), Gaps = 8/295 (2%)
Query: 118 LGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQK 177
LG ++ VP++LGG GL YA +E + + G+++ + S+ IL G+ EQK
Sbjct: 49 LGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQK 108
Query: 178 AKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEI 237
++ ++G + F L+EP +GSDAG+ T A +G ++LNG+K WI+N A
Sbjct: 109 QAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTA--RAEGDSWVLNGTKAWITNAWEASA 166
Query: 238 MTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVP 297
VFA T + ++AF+V G+T G E K+GI+ S+TA + +ED ++P
Sbjct: 167 AVVFASTDRALQN-----KSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIP 221
Query: 298 VENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGT 357
+++LG G GFK+AMQ L+ GR G+A+ G ++ AV++A R+ FG +
Sbjct: 222 KDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQV 281
Query: 358 IQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEA 412
IQ KLA MAL L + + DN + + EAA++K+ ASEAA ++ +A
Sbjct: 282 IQFKLADMALALESARLLTWRAAMLKDN-KKPFIKEAAMAKLAASEAATAISHQA 335
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 165/301 (54%), Gaps = 8/301 (2%)
Query: 112 LEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLV 171
L L G ++ VP++ GG G + ++E V D + ++ ++ +G G++L
Sbjct: 56 LAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILR 114
Query: 172 GNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN 231
G+ E K + LP V++G+ A++ L+E +GSDA S++TRAV DG +ILNGSK WI+N
Sbjct: 115 GSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVA--DGDDWILNGSKCWITN 172
Query: 232 GGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYY 291
GG + TV A V D G + ++AF+V + G T GP E+K+GIK S T E+Y+
Sbjct: 173 GGKSTWYTVMA---VTDPDKG--ANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYF 227
Query: 292 EDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRR 351
E+ ++P + ++G G GFK A+ L++ R + A G + A+ + +R QFGR
Sbjct: 228 ENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRP 287
Query: 352 IDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDE 411
+ +Q LA MA+ + Y + + G D +A SK FAS+ A VT +
Sbjct: 288 VSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGDLGFISAASKCFASDVAMEVTTD 347
Query: 412 A 412
A
Sbjct: 348 A 348
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 168/306 (54%), Gaps = 15/306 (4%)
Query: 116 WDL-------GAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGI 168
WDL G F VP+ GG GL+ +ARMVE + D A+ + + +H S+ I
Sbjct: 41 WDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHI 100
Query: 169 LLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIW 228
LL G+ QK +LP++++G+ A+ LTEP SGSDA ++KT+A G + LNG+K +
Sbjct: 101 LLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGG--WRLNGTKQF 158
Query: 229 ISNGGFAEIMTVFAQT--PVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNT 286
I+ G A + V A+T P E+ + + F ER G+ G E+K+G+ AS+T
Sbjct: 159 ITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPER---GLKVGRKEEKLGLTASDT 215
Query: 287 AEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRV 346
A++ ED+ VP E +LG G GF +++L+ GR G+AA G ++ A+ +A R
Sbjct: 216 AQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGRE 275
Query: 347 QFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAW 406
FGR I F + KLA A L Y+ + + + + + LEAA +K+FASEAA
Sbjct: 276 AFGRPIAEFEGVSFKLAEAATELEAAR-LLYLKAAELKDAGRPFTLEAAQAKLFASEAAV 334
Query: 407 YVTDEA 412
DEA
Sbjct: 335 KACDEA 340
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 159/318 (50%), Gaps = 13/318 (4%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLW----DLGAFSLQVPQD 128
L+E+Q + L + KF E P + + E L W +LG + P
Sbjct: 13 LSEEQ----RQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQ 68
Query: 129 LGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGK 188
GG GL ++ ++E + AVG+ GAH ++ ++ GN QK KYLP++ +G+
Sbjct: 69 YGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGE 128
Query: 189 EFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKD 248
A ++EP +GSD S+K +A G HYILNG+K WI+NG A+++ V+A+T +
Sbjct: 129 YIGALAMSEPNAGSDVVSMKLKA--EKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAA 186
Query: 249 EKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNG 308
+ +TAFIVE+ G ++ K+G++ SNT E+ +ED K+P N+LG G
Sbjct: 187 VPASR---GITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKG 243
Query: 309 FKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALL 368
V M L+ R +A G M++V + + R FG++I F +Q K+A M
Sbjct: 244 VYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTR 303
Query: 369 HYVTESLAYMISGNMDNG 386
Y ++ D G
Sbjct: 304 LMACRQYVYNVAKACDEG 321
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 171/319 (53%), Gaps = 20/319 (6%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVE---PNTLEGLWDLGAFSLQVPQDL 129
LT++Q ++++D V + EV PL + E P L+ L +LG + P++
Sbjct: 3 LTQEQ----RLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQ-LKALAELGLLGMTTPEEW 57
Query: 130 GGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKE 189
GG+GL + +A +E + D +V +++ + +L G+ QK +YL ++ G+
Sbjct: 58 GGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEW 117
Query: 190 FAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDE 249
AFCLTEP +GSDA S++ A G ++LNG K WI++ G A + V A+T E
Sbjct: 118 IGAFCLTEPQAGSDAKSLRAEARRVKGG--FVLNGVKSWITSAGHAHLYVVMART----E 171
Query: 250 KTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGF 309
K ++AF+VE+ G++ G PE+KMG+ A++TAEV E+V VP EN+LG G G
Sbjct: 172 KG------ISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGL 225
Query: 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLH 369
A+ L++GR G+AA G R + A +A +R QFG+++ I K+A M +
Sbjct: 226 AYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKI 285
Query: 370 YVTESLAYMISGNMDNGSQ 388
+L + D G +
Sbjct: 286 AAARALVLEAARKKDRGER 304
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 177/332 (53%), Gaps = 15/332 (4%)
Query: 84 LVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYAR 141
L++ + D+V DP+ +++ ET E L G SL P++ GG G Y +
Sbjct: 23 LIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQ 82
Query: 142 MVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASG 201
++E + +V + + H S+ +L+ G EQK ++LP + +G++ A+ L+EP +G
Sbjct: 83 VLEEIAARWASVAVAVSVH-SLSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAG 141
Query: 202 SDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAF 261
SDA +++ A +P Y++NGSK WI++GG A+ T+FA +TG+ V+ F
Sbjct: 142 SDAAALRCAA--TPTDGGYVINGSKSWITHGGKADFYTLFA-------RTGEGSRGVSCF 192
Query: 262 IVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRF 321
+V G++ G PE+KMG+ A T +Y++ ++ + +G G G ++A L++GR
Sbjct: 193 LVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRL 252
Query: 322 GMAAALAGTMRSVTKKAVDHATQRVQFGRR-IDSFGTIQEKLARMALLHYVTESLAYMIS 380
G+AA G ++ +AV +A +R FGR+ ID G L T Y+ +
Sbjct: 253 GIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGL--GFLLADMAAAVATARATYLDA 310
Query: 381 GNMDNGSQDYHLEAAISKVFASEAAWYVTDEA 412
+ + Y +A+I+K+ A++AA VT +A
Sbjct: 311 ARRRDQGRPYSQQASIAKLTATDAAMKVTTDA 342
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 151/291 (51%), Gaps = 8/291 (2%)
Query: 116 WDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPE 175
W+LG + +P++ GGLGL + E + V + + S+G I++ GN +
Sbjct: 57 WELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIEGN-SLGQMPIIIAGNDQ 115
Query: 176 QKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFA 235
QK KYL R++ A+C+TEP +GSD IKT+A G YI+NG K+WI+NGG A
Sbjct: 116 QKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIINGQKMWITNGGKA 173
Query: 236 EIMTVFAQTPVKDEKTGKVVDKV-TAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDV 294
+ A++ D +K T FIVE G+ G E MG + S+T + +EDV
Sbjct: 174 NWYFLLARS---DPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDV 230
Query: 295 KVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDS 354
KVP ENVL G G GFKVAM + R +AA G + +A +A +R FG+ +
Sbjct: 231 KVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVE 290
Query: 355 FGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAA 405
I LA MA+ + + +D+G ++ + A+I+K FA + A
Sbjct: 291 HQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYY-ASIAKAFAGDIA 340
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 151/291 (51%), Gaps = 8/291 (2%)
Query: 116 WDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPE 175
W+LG + +P++ GGLGL + E + V + + S+G I++ GN +
Sbjct: 57 WELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIEGN-SLGQMPIIIAGNDQ 115
Query: 176 QKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFA 235
QK KYL R++ A+C+TEP +GSD IKT+A G YI+NG K+WI+NGG A
Sbjct: 116 QKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIINGQKMWITNGGKA 173
Query: 236 EIMTVFAQTPVKDEKTGKVVDKV-TAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDV 294
+ A++ D +K T FIVE G+ G E MG + S+T + +EDV
Sbjct: 174 NWYFLLARS---DPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDV 230
Query: 295 KVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDS 354
KVP ENVL G G GFKVAM + R +AA G + +A +A +R FG+ +
Sbjct: 231 KVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVE 290
Query: 355 FGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAA 405
I LA MA+ + + +D+G ++ + A+I+K FA + A
Sbjct: 291 HQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYY-ASIAKAFAGDIA 340
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 151/291 (51%), Gaps = 8/291 (2%)
Query: 116 WDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPE 175
W+LG + +P++ GGLGL + E + V + + S+G I++ GN +
Sbjct: 82 WELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIEGN-SLGQMPIIIAGNDQ 140
Query: 176 QKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFA 235
QK KYL R++ A+C+TEP +GSD IKT+A G YI+NG K+WI+NGG A
Sbjct: 141 QKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIINGQKMWITNGGKA 198
Query: 236 EIMTVFAQTPVKDEKTGKVVDKV-TAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDV 294
+ A++ D +K T FIVE G+ G E MG + S+T + +EDV
Sbjct: 199 NWYFLLARS---DPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDV 255
Query: 295 KVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDS 354
KVP ENVL G G GFKVAM + R +AA G + +A +A +R FG+ +
Sbjct: 256 KVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVE 315
Query: 355 FGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAA 405
I LA MA+ + + +D+G ++ + A+I+K FA + A
Sbjct: 316 HQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYY-ASIAKAFAGDIA 365
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 152/294 (51%), Gaps = 6/294 (2%)
Query: 112 LEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLV 171
L+ W+LG + +P+ GGLGL + E + V + A+ ++G +++
Sbjct: 53 LKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEAN-TLGQVPLIIG 111
Query: 172 GNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN 231
GN +Q+ KYL R++ A+C+TEP +GSD IKT+A G YI+NG K+WI+N
Sbjct: 112 GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIINGQKMWITN 169
Query: 232 GGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYY 291
GG A + A++ + T FIVE GV G E MG + S+T + +
Sbjct: 170 GGKANWYFLLARS--DPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVF 227
Query: 292 EDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRR 351
EDV+VP ENVL G G GFK+AM + R +AA G + +A +A +R FG+
Sbjct: 228 EDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKL 287
Query: 352 IDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAA 405
+ I LA MA+ + + +D+G ++ + A+I+K +A++ A
Sbjct: 288 LAEHQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYY-ASIAKAYAADIA 340
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 152/294 (51%), Gaps = 6/294 (2%)
Query: 112 LEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLV 171
L+ W+LG + +P+ GGLGL + E + V + A+ ++G +++
Sbjct: 43 LKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEAN-TLGQVPLIIG 101
Query: 172 GNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN 231
GN +Q+ KYL R++ A+C+TEP +GSD IKT+A G YI+NG K+WI+N
Sbjct: 102 GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIINGQKMWITN 159
Query: 232 GGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYY 291
GG A + A++ + T FIVE GV G E MG + S+T + +
Sbjct: 160 GGKANWYFLLARS--DPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVF 217
Query: 292 EDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRR 351
EDV+VP ENVL G G GFK+AM + R +AA G + +A +A +R FG+
Sbjct: 218 EDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKL 277
Query: 352 IDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAA 405
+ I LA MA+ + + +D+G ++ + A+I+K +A++ A
Sbjct: 278 LAEHQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYY-ASIAKAYAADIA 330
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 146/295 (49%), Gaps = 9/295 (3%)
Query: 118 LGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQK 177
LG + + D+GG GL+ + + E + + + H + I GN EQ+
Sbjct: 62 LGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWM-IDSFGNEEQR 120
Query: 178 AKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEI 237
K+ P + T ++FA++CLTEP SGSDA S+ T A G HYILNGSK +IS G ++I
Sbjct: 121 HKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSA--KKQGDHYILNGSKAFISGAGESDI 178
Query: 238 MTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVP 297
V +T G ++ +VE+ G++ G EKK+G + T V +ED VP
Sbjct: 179 YVVMCRT------GGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVP 232
Query: 298 VENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGT 357
V N +G G GF +A++ LN GR +A+ G + DH R QFG + S
Sbjct: 233 VANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQY 292
Query: 358 IQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEA 412
+Q LA MA + + + +D +++K+FA++ + + ++A
Sbjct: 293 LQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQA 347
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 111/343 (32%), Positives = 176/343 (51%), Gaps = 34/343 (9%)
Query: 78 SDTLKMLVDPVTKFFDE----VNDPLKNDSL----ETVEPNTLEGLWDLGAFSLQVPQDL 129
S L+ML V F ++ D N++ E V P + +LG F +P++
Sbjct: 6 SKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRP-----MGELGFFGTVIPEEY 60
Query: 130 GGLGLTNTQYARMV---EIV-GGNDLAVGI---VLGAHQSIGFKGILLVGNPEQKAKYLP 182
GG G+ A M+ EI G + L V + VLG +I L G+ K KY+P
Sbjct: 61 GGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTI-----LTYGSEALKKKYVP 115
Query: 183 RVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFA 242
++S+ + F +TEP +GSD ++ + A G H++LNGSK WISN A+++ +A
Sbjct: 116 KLSSAEFLGGFGITEPDAGSDVMAMSSTA--EDKGDHWLLNGSKTWISNAAQADVLIYYA 173
Query: 243 QTPVKDEKTGKVVDKVTAFIVE-RSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENV 301
T D+ G ++AF++E R+F G+ + EK +G AS T E++ ++VKVP EN+
Sbjct: 174 YT---DKAAGS--RGLSAFVIEPRNFPGIKTSNLEK-LGSHASPTGELFLDNVKVPKENI 227
Query: 302 LGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEK 361
LG G+G ++ LN+ R AA G ++ A+ + +R QFG+ I F Q+
Sbjct: 228 LGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDM 287
Query: 362 LARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEA 404
+A+MA+ LAY + D G + L+ A++K A EA
Sbjct: 288 IAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEA 330
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 148/298 (49%), Gaps = 11/298 (3%)
Query: 70 PEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSL--ETVEPNTLEGLWDLGAFSLQVPQ 127
P +L + +D +M+ D + P ++ ET + + ++G +P+
Sbjct: 12 PLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPE 71
Query: 128 DLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTG 187
GG GL Y + V D ++ S+ I G+ QK KYLP+++TG
Sbjct: 72 QYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATG 131
Query: 188 KEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVK 247
+ F LTEP GSD GS+ TRA P G Y L+GSK+WI+N A++ V+A K
Sbjct: 132 EWIGCFGLTEPNHGSDPGSMVTRARKVPGG--YSLSGSKMWITNSPIADVFVVWA----K 185
Query: 248 DEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGN 307
++ G+ D++ FI+E+ G+++ K+G++AS T E+ ++ VP EN+L V
Sbjct: 186 LDEDGR--DEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHV-K 242
Query: 308 GFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARM 365
G + LN+ R+G+A G S A + R QFGR + + IQ+KLA M
Sbjct: 243 GLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADM 300
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 148/298 (49%), Gaps = 11/298 (3%)
Query: 70 PEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSL--ETVEPNTLEGLWDLGAFSLQVPQ 127
P +L + +D +M+ D + P ++ ET + + ++G +P+
Sbjct: 11 PLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPE 70
Query: 128 DLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTG 187
GG GL Y + V D ++ S+ I G+ QK KYLP+++TG
Sbjct: 71 QYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATG 130
Query: 188 KEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVK 247
+ F LTEP GSD GS+ TRA P G Y L+GSK+WI+N A++ V+A K
Sbjct: 131 EWIGCFGLTEPNHGSDPGSMVTRARKVPGG--YSLSGSKMWITNSPIADVFVVWA----K 184
Query: 248 DEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGN 307
++ G+ D++ FI+E+ G+++ K+G++AS T E+ ++ VP EN+L V
Sbjct: 185 LDEDGR--DEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHV-K 241
Query: 308 GFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARM 365
G + LN+ R+G+A G S A + R QFGR + + IQ+KLA M
Sbjct: 242 GLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADM 299
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 148/298 (49%), Gaps = 11/298 (3%)
Query: 70 PEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSL--ETVEPNTLEGLWDLGAFSLQVPQ 127
P +L + +D +M+ D + P ++ ET + + ++G +P+
Sbjct: 15 PLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPE 74
Query: 128 DLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTG 187
GG GL Y + V D ++ S+ I G+ QK KYLP+++TG
Sbjct: 75 QYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATG 134
Query: 188 KEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVK 247
+ F LTEP GSD GS+ TRA P G Y L+GSK+WI+N A++ V+A K
Sbjct: 135 EWIGCFGLTEPNHGSDPGSMVTRARKVPGG--YSLSGSKMWITNSPIADVFVVWA----K 188
Query: 248 DEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGN 307
++ G+ D++ FI+E+ G+++ K+G++AS T E+ ++ VP EN+L V
Sbjct: 189 LDEDGR--DEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHV-K 245
Query: 308 GFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARM 365
G + LN+ R+G+A G S A + R QFGR + + IQ+KLA M
Sbjct: 246 GLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADM 303
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 134/251 (53%), Gaps = 24/251 (9%)
Query: 125 VPQDLGGLGLTNTQYARMV------EIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKA 178
V + GGL N +A V E VG + + +G+ H I I G EQK
Sbjct: 60 VDEKYGGL---NADFAYSVVINEELEKVGSSLVGIGL----HNDIVTPYIASYGTEEQKQ 112
Query: 179 KYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIM 238
K+LP+ TG+ A +TEP +GSD +I T AV DG +YI+NG K +I+NG A+++
Sbjct: 113 KWLPKCVTGELITAIAMTEPGAGSDLANISTTAV--KDGDYYIVNGQKTFITNGIHADLI 170
Query: 239 TVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPV 298
V +T D + ++ +VER G T G +K+G+ A +TAE++++D KVP
Sbjct: 171 VVACKT---DPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPA 227
Query: 299 ENVLGGVGNGFKVAMQILNNGRFGMAAA---LAGTMRSVTKKAVDHATQRVQFGRRIDSF 355
N+LG G GF M+ L R +A A A M S+TK+ V QR FG+R+ F
Sbjct: 228 YNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVK---QRTAFGKRVSEF 284
Query: 356 GTIQEKLARMA 366
T+Q +LA MA
Sbjct: 285 QTVQFRLAEMA 295
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 130/254 (51%), Gaps = 13/254 (5%)
Query: 117 DLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQ 176
+LG +P + GG G+++ Y + + D + + S+ I G+ EQ
Sbjct: 53 ELGFLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQ 112
Query: 177 KAKYLPRVSTGKEFAAFCLTEPASGSDA-GSIKTRAVLSPDGKHYILNGSKIWISNGGFA 235
K ++LP+++ G+ F LTEP GSD G++KTRA +G ++LNG+K+WI+NG A
Sbjct: 113 KREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRA--RREGDTWVLNGTKMWITNGNLA 170
Query: 236 EIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVK 295
+ ++A KDE +V F+V G + ++KM ++AS T+E+ E+V+
Sbjct: 171 HLAVIWA----KDEG-----GEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVR 221
Query: 296 VPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSF 355
VP E++ G K + L RFG+A G + +V ++AV A R FG +
Sbjct: 222 VP-ESLRLPKALGLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKK 280
Query: 356 GTIQEKLARMALLH 369
+Q KLA M H
Sbjct: 281 QLVQAKLAEMLAWH 294
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 139/305 (45%), Gaps = 20/305 (6%)
Query: 65 QVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVE-PNTL-EGLWDLGAFS 122
++F +L +D+ D + V +F D P E+ P+ L + +LG
Sbjct: 18 ELFDTDRLLDQDERD----IAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLG 73
Query: 123 LQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLP 182
+ + Q G G Y + D + S+ I G+ EQK ++LP
Sbjct: 74 MHL-QGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLP 132
Query: 183 RVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFA 242
R++ G F LTEP GS+ ++TRA DG +ILNG+K+WI+NG A++ TV+A
Sbjct: 133 RLAAGDAIGCFGLTEPDFGSNPAGMRTRA--RRDGSDWILNGTKMWITNGNLADVATVWA 190
Query: 243 QTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVL 302
QT D + F+V G T+ +K+ ++AS T+E+ ++V++P L
Sbjct: 191 QTD----------DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQL 240
Query: 303 GGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKL 362
+ G + LN RFG+ G R + + + R F + + ++ QEKL
Sbjct: 241 -PLAEGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKL 299
Query: 363 ARMAL 367
A M +
Sbjct: 300 ANMTV 304
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 123/253 (48%), Gaps = 14/253 (5%)
Query: 115 LWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNP 174
L +LG + + + G G++ Y + D + ++ S+ I G+
Sbjct: 71 LGELGLLGMHL-KGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSD 129
Query: 175 EQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGF 234
EQK ++LP +++G F LTEP GSD ++TRA S G +IL G+K+WI+NG
Sbjct: 130 EQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRS--GDDWILTGTKMWITNGSV 187
Query: 235 AEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDV 294
A++ V+A+T DE + F+V G T+ + KM ++AS T+E+ + V
Sbjct: 188 ADVAVVWART---DE-------GIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGV 237
Query: 295 KVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDS 354
++P L G ++ LN RFG+ G R + A+ +A R QF R I
Sbjct: 238 RLPDSARLPGA-TSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGG 296
Query: 355 FGTIQEKLARMAL 367
F Q+KLA M L
Sbjct: 297 FQLTQQKLADMTL 309
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 118/236 (50%), Gaps = 10/236 (4%)
Query: 130 GGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKE 189
G G+++ Y + + D + S+ I G+ EQ+ KYLP+++ G+
Sbjct: 70 GCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGEL 129
Query: 190 FAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDE 249
F LTEP SGSD S++TRA + K Y LNG+K WI+N A++ V+A+ +D
Sbjct: 130 LGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR--CED- 186
Query: 250 KTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGF 309
+ F++E+ G+++ + K ++AS T + + V+VP ENVL G +
Sbjct: 187 ------GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGA-SSL 239
Query: 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARM 365
LNN R+G+A + G A +A R+QFG + IQ+KLA M
Sbjct: 240 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADM 295
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 118/236 (50%), Gaps = 10/236 (4%)
Query: 130 GGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKE 189
G G+++ Y + + D + S+ I G+ EQ+ KYLP+++ G+
Sbjct: 70 GCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGEL 129
Query: 190 FAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDE 249
F LTEP SGSD S++TRA + K Y LNG+K WI+N A++ V+A+ +D
Sbjct: 130 LGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR--CED- 186
Query: 250 KTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGF 309
+ F++E+ G+++ + K ++AS T + + V+VP ENVL G +
Sbjct: 187 ------GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGA-SSL 239
Query: 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARM 365
LNN R+G+A + G A +A R+QFG + IQ+KLA M
Sbjct: 240 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADM 295
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 118/236 (50%), Gaps = 10/236 (4%)
Query: 130 GGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKE 189
G G+++ Y + + D + S+ I G+ EQ+ KYLP+++ G+
Sbjct: 68 GCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGEL 127
Query: 190 FAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDE 249
F LTEP SGSD S++TRA + K Y LNG+K WI+N A++ V+A+ +D
Sbjct: 128 LGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR--CED- 184
Query: 250 KTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGF 309
+ F++E+ G+++ + K ++AS T + + V+VP ENVL G +
Sbjct: 185 ------GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGA-SSL 237
Query: 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARM 365
LNN R+G+A + G A +A R+QFG + IQ+KLA M
Sbjct: 238 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADM 293
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 24/263 (9%)
Query: 116 WDLGAFSLQVPQDLGGLG-------------LTNTQYARMVEIVGGNDLAVGIVLGAHQS 162
W+ F + LG +G L+ T A + D + + H S
Sbjct: 82 WEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDASCSTFILVHSS 141
Query: 163 IGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYIL 222
+G I L G+ QK KYLP ++ A + LTEP +GSDA + T A G + +
Sbjct: 142 LGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGG--WKI 199
Query: 223 NGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIK 282
NG K WI N FA+++ +FA+ +++ FIV++ G+ + K+G++
Sbjct: 200 NGQKRWIGNSTFADLLIIFARN--------TTTNQINGFIVKKDAPGLKATKIPNKIGLR 251
Query: 283 ASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHA 342
++ ++V VP E+ L GV N F+ ++L R +A G + +
Sbjct: 252 MVQNGDILLQNVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYL 310
Query: 343 TQRVQFGRRIDSFGTIQEKLARM 365
+R QFG + +F Q+KL +M
Sbjct: 311 KERKQFGAPLAAFQLNQQKLVQM 333
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 24/263 (9%)
Query: 116 WDLGAFSLQVPQDLGGLG-------------LTNTQYARMVEIVGGNDLAVGIVLGAHQS 162
W+ F + LG +G L+ T A + D + + H S
Sbjct: 82 WEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDASCSTFILVHSS 141
Query: 163 IGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYIL 222
+G I L G+ QK KYLP ++ A + LTEP +GSDA + T A G + +
Sbjct: 142 LGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGG--WKI 199
Query: 223 NGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIK 282
NG K WI N FA+++ +FA+ +++ FIV++ G+ + K+G++
Sbjct: 200 NGQKRWIGNSTFADLLIIFARN--------TTTNQINGFIVKKDAPGLKATKIPNKIGLR 251
Query: 283 ASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHA 342
++ ++V VP E+ L GV N F+ ++L R +A G + +
Sbjct: 252 MVQNGDILLQNVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYL 310
Query: 343 TQRVQFGRRIDSFGTIQEKLARM 365
+R QFG + +F Q+KL +M
Sbjct: 311 KERKQFGAPLAAFQLNQQKLVQM 333
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 138/303 (45%), Gaps = 22/303 (7%)
Query: 117 DLGAFSLQVPQDLGGLGLTNTQYARMVEIV--GGNDLAVGIVLGAHQSIGFKGILLVGNP 174
++G + P+++GG G A + E + G V L H I I G+
Sbjct: 71 EVGLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTH-GIALPHIAANGSD 129
Query: 175 EQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGF 234
+Y+ GK + +TEP +GSD +++TRAV +G Y++NG+K +I++G
Sbjct: 130 ALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVR--EGDTYVVNGAKTFITSGVR 187
Query: 235 AEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDV 294
A+ +T +T G V+ +++++ G KMG + S+TAE+ + DV
Sbjct: 188 ADFVTTAVRT------GGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDV 241
Query: 295 KVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDS 354
+VP +N++G +GF MQ R G+A T A A +R FGR +
Sbjct: 242 RVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTG 301
Query: 355 FGTIQEKLARMA-----LLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVT 409
I+ KLA MA Y + ++G +D E +++K A A YV
Sbjct: 302 RQIIRHKLAEMARQVDVACTYTRAVMQRWLAG------EDVVAEVSMAKNTAVYACDYVV 355
Query: 410 DEA 412
+EA
Sbjct: 356 NEA 358
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 111/230 (48%), Gaps = 16/230 (6%)
Query: 187 GKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQT-- 244
G++ A +TEP GSD G ++TRA L DG HY++NG+K +I++G A+ + A+T
Sbjct: 139 GEKIGALAITEPGGGSDVGHLRTRADL--DGDHYVINGAKTYITSGVRADYVVTAARTGG 196
Query: 245 PVKDEKTGKVVDKVT-AFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLG 303
P + VVDK T F V R KMG ++S+TAE+ Y DV+VPV N++G
Sbjct: 197 PGAGGVSLIVVDKGTPGFEVTRKL---------DKMGWRSSDTAELSYTDVRVPVANLVG 247
Query: 304 GVGNGFKVAMQILNNGRFGMAA-ALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKL 362
GF R G+A A AG R + V+ R FGR + S +Q L
Sbjct: 248 SENTGFAQIAAAFVAERVGLATQAYAGAQRCL-DLTVEWCRNRDTFGRPLISRQAVQNTL 306
Query: 363 ARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEA 412
A MA V + G + E +K A EA +V ++A
Sbjct: 307 AGMARRIDVARVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQA 356
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 126/270 (46%), Gaps = 14/270 (5%)
Query: 119 GAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKA 178
G +V + GGLGL + + VG ++ V+ + Q + + +G+ Q+A
Sbjct: 37 GLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTS-QGMAAWTVQRLGDAGQRA 95
Query: 179 KYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIM 238
+L +++GK AA +E +GSD +++TR L DG +++G K+W + +A+ +
Sbjct: 96 TFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRL--DGDTAVVDGHKVWTTAAAYADHL 152
Query: 239 TVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPV 298
VF ++++ +G VV +V GV K G +A+ A+++ + V+VP
Sbjct: 153 VVFG---LQEDGSGAVV------VVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPA 203
Query: 299 ENVLGGVGNGFKVAMQI-LNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGT 357
VL G G + + L GR +A G +R+ AV HA R QFGR +
Sbjct: 204 GAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQL 263
Query: 358 IQEKLARMALLHYVTESLAYMISGNMDNGS 387
+ +A + + + S + D GS
Sbjct: 264 VAGHIADLWTAEQIAARVCEYASDHWDEGS 293
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 143/340 (42%), Gaps = 30/340 (8%)
Query: 88 VTKFF-------DEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYA 140
VT+F+ D+ PL D L+ E +EGLW+L ++ GL++ YA
Sbjct: 49 VTEFYVQNENSVDKWGKPLVIDKLK--EMAKVEGLWNLFLPAVS--------GLSHVDYA 98
Query: 141 RMVEIVGGNDLAVGIVLGAHQSIGFKGIL-LVGNPEQKAKYLPRVSTGKEFAAFCLTEP- 198
+ E G A + G +L L G+ EQK ++L + G + FC+TEP
Sbjct: 99 LIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPD 158
Query: 199 ASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGG--FAEIMTVFAQTPVKDEKTGKVVD 256
+ SDA +I+ + D Y++NG K W S G +I V +T K
Sbjct: 159 VASSDATNIECS--IQRDEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHK--- 213
Query: 257 KVTAFIVERSFGGVTSGPPEKKMGIKAS---NTAEVYYEDVKVPVENVLGGVGNGFKVAM 313
+ + +V + GV P G + E+++ V+VP N++ G G GF+++
Sbjct: 214 QHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFNQVRVPATNLILGEGRGFEISQ 273
Query: 314 QILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTE 373
L GR G + + ATQR+ F +++ + + +A +
Sbjct: 274 GRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIEKIR 333
Query: 374 SLAYMISGNMDN-GSQDYHLEAAISKVFASEAAWYVTDEA 412
L + +MD GS E A+ KV A A + D A
Sbjct: 334 LLTLKAAHSMDTLGSAGAKKEIAMIKVAAPRAVSKIVDWA 373
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 13/254 (5%)
Query: 114 GLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIV-LGAHQSIGFKGILLVG 172
GLW+L L P+ LGG GL+N++YA + E +G + A + A S + + G
Sbjct: 71 GLWNL---FLPDPE-LGG-GLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYG 125
Query: 173 NPEQKAKYLPRVSTGKEFAAFCLTEP-ASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN 231
+ EQK +L + G +AFC+TEP + SDA ++ AV+ +G ++NG K W +
Sbjct: 126 SQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVV--EGDEVVINGRKWWSTG 183
Query: 232 GGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGI--KASNTAEV 289
G + + + D + + + +V G+T MG + V
Sbjct: 184 VGHPDCKVIIFMG-LTDPNAHRYA-RHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVV 241
Query: 290 YYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFG 349
+++V++P + + G G GF++A L GR A L G + A R FG
Sbjct: 242 SFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAFG 301
Query: 350 RRIDSFGTIQEKLA 363
+ + + G +E++A
Sbjct: 302 KPLVNLGGNRERIA 315
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 144/340 (42%), Gaps = 45/340 (13%)
Query: 96 NDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGI 155
N PL+ ++ +P T G Q+ GG G T + A +VE + + +
Sbjct: 39 NSPLR---FQSTQP-TYAAAVSAGILKGQISPAHGGTGGTLIESAILVEECYSVEPSAAL 94
Query: 156 VLGAHQSIGFKGILLVGNPEQKAKYLPRVS-TGKEFAAFCLTEPASGSDA---GSIKTRA 211
+ A +G I L P+ P +S G A+ +EP ++A G+ +
Sbjct: 95 TIFA-TGLGLTPINLAAGPQHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQT 153
Query: 212 VLSPDGKHYILNGSKIWISNGG--------FAEIMTVFAQTPVKDEKTGKVVDKVTAFIV 263
+G +++NG K+W +N A ++ A TP+++ + + +KV +V
Sbjct: 154 TARLEGDEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPE--NKVMIILV 211
Query: 264 ERS---FGGVTSGPPEKKM---GIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILN 317
R+ G S + + G + + V Y +V+VP +NVL G G KVA
Sbjct: 212 TRADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAF---- 267
Query: 318 NGRFGMAAALAGTMR-SVTKKAVDHATQRVQFGRRIDSFGTIQ--EKLARMALLHYV--- 371
G F +A L G M + + A D A ++F + + G + E+ A LL V
Sbjct: 268 -GAFDGSAVLVGAMGVGLMRAAFDAA---LKFAKEDNRGGAVPLLERQAFADLLSGVKIQ 323
Query: 372 ---TESLAYMISGNMDNGSQDYHLE---AAISKVFASEAA 405
+L + + M+NG DY A +KVF SEAA
Sbjct: 324 TEAARALTWKAAHAMENGPGDYDARRELALAAKVFCSEAA 363
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 9/195 (4%)
Query: 119 GAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKA 178
G SL VP++ GG G +V + D ++G + G H + I L+G+ EQ+
Sbjct: 76 GLLSLLVPREYGGWGADWPTAIEVVREIAAADGSLGHLFGYHLT-NAPMIELIGSQEQEE 134
Query: 179 KYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIM 238
+++ + +E + S K A + DG Y+LNG+K + S ++++
Sbjct: 135 HLYTQIAQNNWWTGNASSE--NNSHVLDWKVSATPTEDGG-YVLNGTKHFCSGAKGSDLL 191
Query: 239 TVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPV 298
VF + G ++ A + S GVT +G++ +++ + +VKV
Sbjct: 192 FVFGVVQDDSPQQGAII----AAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEP 247
Query: 299 ENVLGGVGNGFKVAM 313
+ VLG N F +A
Sbjct: 248 DEVLGAP-NAFVLAF 261
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 12/215 (5%)
Query: 195 LTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKV 254
+TE GSD S TRA DG Y L G K W + ++ V AQT G
Sbjct: 184 MTEKQGGSDVMSNTTRAERLEDGS-YRLVGHK-WFFSVPQSDAHLVLAQT-----AGGLS 236
Query: 255 VDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQ 314
V F+ + + + K+G +++ + EV ++D + +LG G G ++ ++
Sbjct: 237 CFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDA---IGWLLGLEGEGIRLILK 293
Query: 315 ILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTES 374
+ RF A MR A+ HA QR FG + ++ L+RMAL +
Sbjct: 294 MGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTA 353
Query: 375 LAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVT 409
L + ++ D + EA +++F A + +
Sbjct: 354 LLFRLARAWDRRADAK--EALWARLFTPAAKFVIC 386
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 99/241 (41%), Gaps = 27/241 (11%)
Query: 119 GAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKA 178
G QVP LGG + + ++E + + A I + A ++G ++L +P +
Sbjct: 55 GLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQE 113
Query: 179 KYL-PRVS-TGKEFAAFCLTEP---ASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN-G 232
K+L P +S G+ A+ +EP A+ G + G ++++G K+W SN G
Sbjct: 114 KFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSG 173
Query: 233 GF----AEIMTVFA---------QTPVKDEKTGKVVDKVTAFIVERSFGGVTS--GPPEK 277
G+ A++ V Q P D T V VT + + G PE
Sbjct: 174 GWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPEL 233
Query: 278 KMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKK 337
I S + + VP EN+L G + Q L F MAAAL G M T +
Sbjct: 234 AGHITTSG-PHTRFTEFHVPHENLLCTPG----LKAQGLVETAFAMAAALVGAMAIGTAR 288
Query: 338 A 338
A
Sbjct: 289 A 289
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 27/241 (11%)
Query: 119 GAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKA 178
G QVP LGG + + ++E + + A I + A ++G ++L +P +
Sbjct: 56 GLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQE 114
Query: 179 KYL-PRVS-TGKEFAAFCLTEP---ASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN-G 232
K+L P +S G+ A+ +EP A+ G + G ++++G K+W SN G
Sbjct: 115 KFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSG 174
Query: 233 GF----AEIMTVFA---------QTPVKDEKTGKVVDKVTAFIVERSFGGVTS--GPPEK 277
G+ A++ V Q P D T V VT + + G PE
Sbjct: 175 GWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPEL 234
Query: 278 KMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKK 337
I S + + VP EN+L G + Q L F M+AAL G M T +
Sbjct: 235 AGHITTSG-PHTRFTEFHVPHENLLCTPG----LKAQGLVETAFAMSAALVGAMAIGTAR 289
Query: 338 A 338
A
Sbjct: 290 A 290
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 27/241 (11%)
Query: 119 GAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKA 178
G QVP LGG + + ++E + + A I + A ++G ++L +P +
Sbjct: 56 GLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQE 114
Query: 179 KYL-PRVS-TGKEFAAFCLTEP---ASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN-G 232
K+L P +S G+ A+ +EP A+ G + G ++++G K+W SN G
Sbjct: 115 KFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSG 174
Query: 233 GF----AEIMTVFA---------QTPVKDEKTGKVVDKVTAFIVERSFGGVTS--GPPEK 277
G+ A++ V Q P D T V VT + + G PE
Sbjct: 175 GWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPEL 234
Query: 278 KMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKK 337
I S + + VP EN+L G + Q L F M+AAL G M T +
Sbjct: 235 AGHITTSG-PHTRFTEFHVPHENLLCTPG----LKAQGLVETAFAMSAALVGAMAIGTAR 289
Query: 338 A 338
A
Sbjct: 290 A 290
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 27/241 (11%)
Query: 119 GAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKA 178
G QVP LGG + + ++E + + A I + A ++G ++L +P +
Sbjct: 56 GLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQE 114
Query: 179 KYL-PRVS-TGKEFAAFCLTEP---ASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN-G 232
K+L P +S G+ A+ +EP A+ G + G ++++G K+W SN G
Sbjct: 115 KFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSG 174
Query: 233 GF----AEIMTVFA---------QTPVKDEKTGKVVDKVTAFIVERSFGGVTS--GPPEK 277
G+ A++ V Q P D T V VT + + G PE
Sbjct: 175 GWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPEL 234
Query: 278 KMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKK 337
I S + + VP EN+L G + Q L F M+AAL G M T +
Sbjct: 235 AGHITTSG-PHTRFTEFHVPHENLLCTPG----LKAQGLVETAFAMSAALVGAMAIGTAR 289
Query: 338 A 338
A
Sbjct: 290 A 290
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 27/241 (11%)
Query: 119 GAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKA 178
G QVP LGG + + ++E + + A I + A ++G ++L +P +
Sbjct: 55 GLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQE 113
Query: 179 KYL-PRVS-TGKEFAAFCLTEP---ASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN-G 232
K+L P +S G+ A+ +EP A+ G + G ++++G K+W SN G
Sbjct: 114 KFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSG 173
Query: 233 GF----AEIMTVFA---------QTPVKDEKTGKVVDKVTAFIVERSFGGVTS--GPPEK 277
G+ A++ V Q P D T V VT + + G PE
Sbjct: 174 GWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPEL 233
Query: 278 KMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKK 337
I S + + VP EN+L G + Q L F M+AAL G M T +
Sbjct: 234 AGHITTSG-PHTRFTEFHVPHENLLCTPG----LKAQGLVETAFAMSAALVGAMAIGTAR 288
Query: 338 A 338
A
Sbjct: 289 A 289
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 27/241 (11%)
Query: 119 GAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKA 178
G QVP LGG + + ++E + + A I + A ++G ++L +P +
Sbjct: 55 GLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQE 113
Query: 179 KYL-PRVS-TGKEFAAFCLTEP---ASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN-G 232
K+L P +S G+ A+ +EP A+ G + G ++++G K+W SN G
Sbjct: 114 KFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSG 173
Query: 233 GF----AEIMTVFA---------QTPVKDEKTGKVVDKVTAFIVERSFGGVTS--GPPEK 277
G+ A++ V Q P D T V VT + + G PE
Sbjct: 174 GWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPEL 233
Query: 278 KMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKK 337
I S + + VP EN+L G + Q L F M+AAL G M T +
Sbjct: 234 AGHITTSG-PHTRFTEFHVPHENLLCTPG----LKAQGLVETAFAMSAALVGAMAIGTAR 288
Query: 338 A 338
A
Sbjct: 289 A 289
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 26/189 (13%)
Query: 172 GNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYI-----LNGSK 226
G +Q+ K+LP + + TE GS+ ++T A P ++ L SK
Sbjct: 133 GTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 192
Query: 227 IWISNGGFAEIMT---VFAQ--TPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGI 281
W GG ++ T V+A+ T KD + ++ + + GVT G K G
Sbjct: 193 WW--PGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVTVGDIGMKFGN 250
Query: 282 KASNTAE---VYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMA----AALAGTMRSV 334
A N+ + + ++ V++P + +L V Q+ G++ + L GTM V
Sbjct: 251 GAYNSMDNGVLSFDHVRIPRDQMLMRVS-------QVTKEGKYVQSDIPRQLLYGTMVYV 303
Query: 335 TKKAVDHAT 343
+ V A+
Sbjct: 304 RQSIVADAS 312
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 96/239 (40%), Gaps = 27/239 (11%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGL 132
LT + +L + + E D D T E LG VP +LGGL
Sbjct: 9 LTPAGRTVVDLLAGVIPRISAEAAD---RDRTGTFPVEAFEQFAKLGLMGATVPAELGGL 65
Query: 133 GLTN-----TQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKA---KYLPRV 184
GLT T R+ E LA + L ++ ++ G P +A + L +
Sbjct: 66 GLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYE--WQHGTPPVRAMAERLLRAM 123
Query: 185 STGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGK-HYILNGSKIWISNGGFAEIMTVFAQ 243
+ G+ AA C + DA + T L DG ++L+G K+ +S A V AQ
Sbjct: 124 AEGE--AAVC----GALKDAPGVVTE--LHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQ 175
Query: 244 TPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVL 302
+ + G V V +V R G+T +G++AS T EV ++ V + +L
Sbjct: 176 ---RRDDDGSVFLAVP--VVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELL 229
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 131/317 (41%), Gaps = 36/317 (11%)
Query: 119 GAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKA 178
G QVP LGG + + ++E + + A I + A ++G ++L +P +
Sbjct: 56 GLIKAQVPIPLGGTXESLVHESIILEELFAVEPATSITIVA-TALGLXPVILCDSPSLQE 114
Query: 179 KYL-PRVS-TGKEFAAFCLTEP---ASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN-G 232
K+L P +S G+ A+ +EP A+ G + G ++++G K+W SN G
Sbjct: 115 KFLKPFISGEGEPLASLXHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSG 174
Query: 233 GF----AEIMTVFA---------QTPVKDEKTGKVVDKVTAFIVERSFGGVTS--GPPEK 277
G+ A++ V Q P D T V VT + + G PE
Sbjct: 175 GWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPEL 234
Query: 278 KMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALA-----GTMR 332
I S + + VP EN+L G + Q L F +AAL GT R
Sbjct: 235 AGHITTSG-PHTRFTEFHVPHENLLCTPG----LKAQGLVETAFAXSAALVGAXAIGTAR 289
Query: 333 SVTKKAVDHATQRVQFG-RRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYH 391
+ ++A+ A + G + I ++ +KL + + L + +++ + ++
Sbjct: 290 AAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWK 349
Query: 392 LE---AAISKVFASEAA 405
++ A +K++ ++ A
Sbjct: 350 VKLEXAXQTKIYTTDVA 366
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 25/149 (16%)
Query: 172 GNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILN-----GSK 226
G EQ+ K+L + + + TE GS+ ++T A L P ++++ SK
Sbjct: 114 GTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASK 173
Query: 227 IWISNGGFAEIMT---VFAQTPVKDEKTGKVVDKVTAFIVE-RS------FGGVTSGPPE 276
W GG ++ T V+A+ + G + FIV+ RS +T G
Sbjct: 174 WW--PGGLGKVSTHAVVYARLITNGKDYG-----IHGFIVQLRSLEDHSPLPNITVGDIG 226
Query: 277 KKMGIKASNTAE---VYYEDVKVPVENVL 302
KMG A N+ + + ++ V++P + +L
Sbjct: 227 TKMGNGAYNSMDNGFLMFDHVRIPRDQML 255
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 18/159 (11%)
Query: 157 LGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPD 216
L H + +L EQ+ ++ + + TE G+ ++T A P
Sbjct: 100 LDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPK 159
Query: 217 GKHYILNGS-----KIWISN-GGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIV------- 263
+ +ILN K W G + V AQ + E G + AF+V
Sbjct: 160 TQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYG-----LHAFVVPIREIGT 214
Query: 264 ERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVL 302
+ G+T G K G + + + ++ ++P EN+L
Sbjct: 215 HKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENML 253
>pdb|1RU3|A Chain A, Crystal Structure Of The Monomeric Acetyl-Coa Synthase
From Carboxydothermus Hydrogenoformans
Length = 732
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 84 LVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWD-----LGAFS--LQVPQDLGGLGLTN 136
L+DPV ++ N+ + +S T+E L + + G F + +L G + N
Sbjct: 559 LIDPVKGQWESFNEYIYKNSQRTIERMNLYTIMEYPMTSCGCFEAIMAYLPELNGFMIVN 618
Query: 137 TQYARMVEIVGGNDLAVGIVLGAHQSIGFKGI 168
+++ M I G+V G Q+ GF GI
Sbjct: 619 REHSGMTPIGMTFSTLAGMVGGGTQTPGFMGI 650
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 138 QYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTE 197
Q AR+++++ D+ G AH + ++ V + EQK + ++ G
Sbjct: 233 QDARLLKVISYLDVGDGNYW-AHP---IENLVAVVDLEQKK--IVKIEEGPVVPVPMTAR 286
Query: 198 PASGSD--AGSIKTRAVLSPDGKHYILNGSKIWISNGGF 234
P G D A ++K ++ P+GK+Y + G I N F
Sbjct: 287 PFDGRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDF 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,953,133
Number of Sequences: 62578
Number of extensions: 725050
Number of successful extensions: 1971
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1826
Number of HSP's gapped (non-prelim): 77
length of query: 677
length of database: 14,973,337
effective HSP length: 105
effective length of query: 572
effective length of database: 8,402,647
effective search space: 4806314084
effective search space used: 4806314084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)