Query psy2177
Match_columns 677
No_of_seqs 413 out of 3201
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 18:14:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0137|consensus 100.0 6E-113 1E-117 925.3 43.5 601 17-676 18-621 (634)
2 PRK09463 fadE acyl-CoA dehydro 100.0 3.1E-94 6.7E-99 835.1 56.9 587 10-658 18-624 (777)
3 PTZ00457 acyl-CoA dehydrogenas 100.0 2.3E-85 5E-90 734.1 53.4 493 44-676 10-516 (520)
4 PRK13026 acyl-CoA dehydrogenas 100.0 7.2E-84 1.6E-88 746.1 58.2 582 9-658 16-624 (774)
5 KOG0139|consensus 100.0 2.1E-76 4.5E-81 606.9 23.2 365 68-493 31-398 (398)
6 KOG0140|consensus 100.0 2.2E-74 4.8E-79 582.5 28.4 375 73-512 28-404 (408)
7 KOG0141|consensus 100.0 1E-70 2.3E-75 556.0 22.2 368 73-498 41-412 (421)
8 cd01161 VLCAD Very long chain 100.0 1.9E-68 4.1E-73 588.9 41.2 408 51-515 1-409 (409)
9 cd01151 GCD Glutaryl-CoA dehyd 100.0 6.9E-61 1.5E-65 524.7 40.1 361 73-498 13-375 (386)
10 PTZ00456 acyl-CoA dehydrogenas 100.0 1.2E-59 2.7E-64 539.9 52.0 522 44-657 27-608 (622)
11 TIGR03203 pimD_small pimeloyl- 100.0 7.8E-61 1.7E-65 523.4 37.8 363 73-498 4-371 (378)
12 cd01157 MCAD Medium chain acyl 100.0 2.7E-60 5.9E-65 518.0 38.8 368 73-498 1-370 (378)
13 cd01162 IBD Isobutyryl-CoA deh 100.0 8.5E-60 1.8E-64 514.0 39.2 365 73-498 1-367 (375)
14 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 7.9E-60 1.7E-64 513.7 37.8 364 73-498 1-366 (372)
15 PTZ00461 isovaleryl-CoA dehydr 100.0 1.4E-59 3E-64 518.7 38.2 362 73-498 37-400 (410)
16 PRK12341 putative acyl-CoA deh 100.0 2.1E-59 4.5E-64 512.2 38.8 363 73-498 5-371 (381)
17 cd01156 IVD Isovaleryl-CoA deh 100.0 2.4E-59 5.2E-64 509.9 38.6 366 73-498 2-369 (376)
18 PLN02636 acyl-coenzyme A oxida 100.0 1.8E-57 3.8E-62 526.6 55.7 529 59-672 50-639 (686)
19 cd01160 LCAD Long chain acyl-C 100.0 3.1E-59 6.8E-64 508.3 37.8 361 82-498 4-366 (372)
20 PRK03354 crotonobetainyl-CoA d 100.0 3.9E-59 8.4E-64 510.0 38.3 363 73-498 5-370 (380)
21 PLN02519 isovaleryl-CoA dehydr 100.0 5.5E-59 1.2E-63 513.0 38.7 366 73-498 26-395 (404)
22 PLN02526 acyl-coenzyme A oxida 100.0 4E-58 8.6E-63 507.5 38.2 363 71-498 27-391 (412)
23 COG1960 CaiA Acyl-CoA dehydrog 100.0 4.7E-57 1E-61 495.0 37.9 362 82-498 10-381 (393)
24 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 2.4E-57 5.1E-62 498.2 34.5 364 82-498 4-387 (394)
25 cd01158 SCAD_SBCAD Short chain 100.0 2.2E-56 4.8E-61 485.6 37.5 361 82-498 4-366 (373)
26 TIGR03204 pimC_large pimeloyl- 100.0 3.7E-56 8E-61 489.3 37.7 366 73-498 4-387 (395)
27 cd01153 ACAD_fadE5 Putative ac 100.0 6E-55 1.3E-59 481.4 37.9 356 85-498 2-400 (407)
28 PLN02312 acyl-CoA oxidase 100.0 3.2E-53 7E-58 490.2 51.8 341 102-498 101-480 (680)
29 PRK11561 isovaleryl CoA dehydr 100.0 9.4E-54 2E-58 482.1 43.0 404 110-604 90-517 (538)
30 cd01152 ACAD_fadE6_17_26 Putat 100.0 3.6E-54 7.9E-59 470.7 32.8 362 82-498 4-373 (380)
31 PLN02876 acyl-CoA dehydrogenas 100.0 8.2E-54 1.8E-58 509.4 37.2 375 73-512 402-818 (822)
32 cd01154 AidB Proteins involved 100.0 2.3E-53 5E-58 470.4 38.1 350 86-498 35-411 (418)
33 KOG0138|consensus 100.0 2.8E-54 6.2E-59 435.2 25.3 373 63-498 45-419 (432)
34 cd01163 DszC Dibenzothiophene 100.0 7.9E-52 1.7E-56 451.5 33.0 336 100-498 16-367 (377)
35 PTZ00460 acyl-CoA dehydrogenas 100.0 8.3E-49 1.8E-53 451.7 44.6 295 151-498 89-424 (646)
36 cd01150 AXO Peroxisomal acyl-C 100.0 5.2E-48 1.1E-52 444.7 44.6 311 135-498 80-437 (610)
37 PLN02443 acyl-coenzyme A oxida 100.0 3.4E-45 7.4E-50 422.5 45.0 436 157-672 99-587 (664)
38 cd01159 NcnH Naphthocyclinone 100.0 7.1E-47 1.5E-51 411.7 28.6 328 100-498 16-363 (370)
39 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.4E-46 3E-51 400.7 30.2 321 82-498 4-324 (327)
40 KOG1469|consensus 100.0 3.7E-43 8E-48 350.3 16.6 332 114-498 35-375 (392)
41 KOG0135|consensus 100.0 2.4E-34 5.3E-39 310.4 40.1 450 136-664 104-607 (661)
42 KOG0136|consensus 100.0 8E-26 1.7E-30 249.9 35.2 299 154-512 108-448 (670)
43 TIGR02309 HpaB-1 4-hydroxyphen 99.9 2.3E-24 5E-29 241.3 22.5 235 177-423 129-391 (477)
44 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 8E-22 1.7E-26 186.5 18.1 144 306-498 1-144 (150)
45 PF02771 Acyl-CoA_dh_N: Acyl-C 99.7 4.8E-17 1.1E-21 147.0 5.4 107 82-188 5-113 (113)
46 PF02770 Acyl-CoA_dh_M: Acyl-C 99.4 1.3E-13 2.8E-18 108.5 5.4 51 192-244 1-51 (52)
47 COG2368 Aromatic ring hydroxyl 99.3 1.5E-10 3.2E-15 126.6 22.2 268 177-471 133-432 (493)
48 PF08028 Acyl-CoA_dh_2: Acyl-C 99.3 2.2E-11 4.8E-16 114.1 11.8 103 321-423 1-112 (134)
49 PF09317 DUF1974: Domain of un 99.3 3.1E-10 6.8E-15 118.6 19.6 147 502-658 2-153 (284)
50 TIGR02310 HpaB-2 4-hydroxyphen 99.2 2.3E-09 5.1E-14 120.8 21.4 256 177-456 138-426 (519)
51 PF11794 HpaB_N: 4-hydroxyphen 98.1 1.7E-05 3.6E-10 82.9 11.3 120 178-302 126-263 (264)
52 PF03241 HpaB: 4-hydroxyphenyl 95.5 0.52 1.1E-05 47.8 15.7 96 350-456 42-141 (205)
53 PF00441 Acyl-CoA_dh_1: Acyl-C 93.9 0.3 6.4E-06 45.7 8.6 83 588-671 43-125 (150)
54 cd01162 IBD Isobutyryl-CoA deh 92.0 3.9 8.6E-05 44.7 15.3 82 588-669 265-346 (375)
55 cd01161 VLCAD Very long chain 89.4 6.7 0.00014 43.6 14.3 86 587-672 295-381 (409)
56 cd01157 MCAD Medium chain acyl 89.0 9.2 0.0002 41.8 14.8 83 587-670 268-350 (378)
57 PRK03354 crotonobetainyl-CoA d 88.2 11 0.00023 41.6 14.6 81 587-668 268-348 (380)
58 PTZ00457 acyl-CoA dehydrogenas 88.1 4.2 9.1E-05 47.0 11.7 75 348-423 429-503 (520)
59 cd00567 ACAD Acyl-CoA dehydrog 87.9 11 0.00023 40.1 14.1 86 588-673 222-307 (327)
60 TIGR03207 cyc_hxne_CoA_dh cycl 87.7 12 0.00026 41.0 14.6 82 588-671 266-347 (372)
61 KOG0139|consensus 87.6 4.6 9.9E-05 43.8 10.6 78 586-664 300-377 (398)
62 cd01151 GCD Glutaryl-CoA dehyd 87.6 10 0.00023 41.7 14.1 82 588-670 274-355 (386)
63 PLN02526 acyl-coenzyme A oxida 87.4 9.8 0.00021 42.4 13.9 81 588-669 290-370 (412)
64 PRK12341 putative acyl-CoA deh 87.1 15 0.00032 40.4 14.9 81 588-669 270-350 (381)
65 PF14749 Acyl-CoA_ox_N: Acyl-c 86.9 0.24 5.3E-06 45.8 0.7 35 156-190 91-125 (125)
66 TIGR03203 pimD_small pimeloyl- 86.8 10 0.00022 41.9 13.5 85 580-664 258-345 (378)
67 cd01155 ACAD_FadE2 Acyl-CoA de 84.8 19 0.00041 39.8 14.4 85 587-671 283-368 (394)
68 PTZ00461 isovaleryl-CoA dehydr 84.7 20 0.00043 39.9 14.6 82 588-670 299-380 (410)
69 PLN02519 isovaleryl-CoA dehydr 84.6 19 0.00042 39.9 14.5 82 588-670 294-375 (404)
70 cd01160 LCAD Long chain acyl-C 84.4 22 0.00049 38.6 14.7 82 588-670 265-346 (372)
71 PRK09463 fadE acyl-CoA dehydro 83.8 14 0.00031 44.8 13.6 76 587-663 361-436 (777)
72 cd01156 IVD Isovaleryl-CoA deh 83.3 31 0.00068 37.5 15.2 83 588-671 268-350 (376)
73 KOG0137|consensus 83.1 13 0.00029 42.9 12.1 71 348-418 533-603 (634)
74 cd01152 ACAD_fadE6_17_26 Putat 83.0 4.9 0.00011 44.1 8.8 77 587-664 263-339 (380)
75 cd01158 SCAD_SBCAD Short chain 79.9 42 0.00091 36.4 14.7 83 588-671 265-347 (373)
76 PLN02876 acyl-CoA dehydrogenas 79.6 30 0.00064 42.4 14.6 80 588-667 708-788 (822)
77 cd01153 ACAD_fadE5 Putative ac 77.2 30 0.00064 38.5 12.7 81 592-672 289-382 (407)
78 cd01159 NcnH Naphthocyclinone 74.5 20 0.00044 39.1 10.3 82 589-670 254-342 (370)
79 COG1960 CaiA Acyl-CoA dehydrog 71.1 84 0.0018 34.5 14.2 79 587-666 279-357 (393)
80 cd01154 AidB Proteins involved 68.8 74 0.0016 35.6 13.3 77 588-664 302-385 (418)
81 PF12806 Acyl-CoA_dh_C: Acetyl 68.7 99 0.0022 28.6 12.2 99 560-658 18-121 (130)
82 PRK13026 acyl-CoA dehydrogenas 68.5 68 0.0015 39.1 13.5 76 587-663 360-435 (774)
83 KOG0140|consensus 68.4 98 0.0021 33.5 12.9 85 579-664 285-371 (408)
84 PRK11561 isovaleryl CoA dehydr 66.5 82 0.0018 36.8 13.3 83 588-670 327-414 (538)
85 TIGR03204 pimC_large pimeloyl- 60.6 63 0.0014 35.8 10.7 69 587-655 269-338 (395)
86 PLN02312 acyl-CoA oxidase 59.8 1.3E+02 0.0028 36.2 13.7 77 592-668 378-458 (680)
87 KOG0138|consensus 59.4 50 0.0011 35.4 8.8 73 586-658 316-388 (432)
88 PTZ00460 acyl-CoA dehydrogenas 57.9 1.3E+02 0.0028 36.0 13.1 74 591-664 314-398 (646)
89 cd01163 DszC Dibenzothiophene 55.9 59 0.0013 35.5 9.4 73 591-663 257-340 (377)
90 PLN02636 acyl-coenzyme A oxida 48.3 2E+02 0.0043 34.7 12.7 74 592-665 372-453 (686)
91 TIGR02309 HpaB-1 4-hydroxyphen 47.0 1.7E+02 0.0037 33.7 11.4 72 586-657 311-386 (477)
92 PTZ00456 acyl-CoA dehydrogenas 43.3 3.6E+02 0.0078 32.1 13.7 82 589-670 359-452 (622)
93 PLN02443 acyl-coenzyme A oxida 27.7 7E+02 0.015 30.0 12.8 69 596-664 328-407 (664)
94 PF12186 AcylCoA_dehyd_C: Acyl 24.2 5.8E+02 0.012 23.6 12.5 90 559-657 17-106 (114)
No 1
>KOG0137|consensus
Probab=100.00 E-value=5.7e-113 Score=925.28 Aligned_cols=601 Identities=52% Similarity=0.776 Sum_probs=570.5
Q ss_pred cccccchHHHhhhhhhhhhhhhhh--HhhhhcccCcchhHhhccCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q psy2177 17 KLFDVNVNTQFRRLASASAAVKAK--EEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDE 94 (677)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~lf~g~~~~~~~~~~p~~l~~e~~~~~~~l~~~~~~f~~~ 94 (677)
.+..++-.+-+.+....++..... ..+..+..+.+|.+++|.|+...+++||||+++++|+.+.++++++++++|+.+
T Consensus 18 ~~t~r~t~~~~a~~~~~a~ta~~~~~~~k~~~i~~rs~~~~lF~~~~v~k~v~~yPev~~~e~~~~~~~~~~pl~r~f~e 97 (634)
T KOG0137|consen 18 TLTARHTSASRAYLGGAAQTAPRRLDSKKDASIESRSFARGLFRGKLVTKDVFPYPEVITSEQKELLEQFVLPLERFFEE 97 (634)
T ss_pred ccccccchhhhhhhcchhhhccccccccccCCccchhHHHHhhhhhhhhhhhcCCcccCcHHHHHHHHhhhhhHHHhhhc
Confidence 334444444444444433322222 233678899999999999999999999999999999999999999999999999
Q ss_pred hCCCcccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHhcCCh
Q psy2177 95 VNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNP 174 (677)
Q Consensus 95 ~~~p~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~ 174 (677)
++|+..+|+.+.+++++++.|+++|+||+.||++|||.|+++++++++.|.++.+|.++++.+.+|++++...|..||++
T Consensus 98 ~~d~~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~ 177 (634)
T KOG0137|consen 98 VNDSKKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTD 177 (634)
T ss_pred cchhhhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeecCccccCEEEEEEEcCCCCCCCCcc
Q psy2177 175 EQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKV 254 (677)
Q Consensus 175 eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isna~~Ad~~lV~Art~~~d~~~g~~ 254 (677)
+||++|||+|++|+.+++||+|||..|||++++.|+|++.+||++|+|||.|.||||++.||+++|||+|+ .|+.+|..
T Consensus 178 ~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~-~~~~~g~~ 256 (634)
T KOG0137|consen 178 EQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTE-VDPADGEV 256 (634)
T ss_pred HHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccc-cCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 57788988
Q ss_pred cCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2177 255 VDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSV 334 (677)
Q Consensus 255 ~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~a 334 (677)
++++++|||+++..||+.++++.+||+||+++++|+|++|.||.+|+||.+|+|++++|+++|.+|+.+++.++|+||++
T Consensus 257 k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~ 336 (634)
T KOG0137|consen 257 KRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKRI 336 (634)
T ss_pred cCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy2177 335 TKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDN-GSQDYHLEAAISKVFASEAAWYVTDEAI 413 (677)
Q Consensus 335 l~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~-~~~~~~~~~a~aK~~ase~a~~v~~~a~ 413 (677)
++++.+|+..|+|||.+|.++..+|+++++|...+|++|+++|.+++.+|+ +..++.+++++.|+|++|.+|.++++++
T Consensus 337 I~~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d~~lEaai~Ki~a~e~a~~v~se~i 416 (634)
T KOG0137|consen 337 IEEAADYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDEVGAKDVQLEAAILKIFASEQAWAVVSEAI 416 (634)
T ss_pred HHHHHHHhhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccceeeeehHHHHHHHhhhHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999 7889999999999999999999999999
Q ss_pred HHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCccccccCchH
Q psy2177 414 QILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVND 493 (677)
Q Consensus 414 qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~ 493 (677)
|++||+||+. + +|+||++|| +| +++|||||||
T Consensus 417 qi~Gg~g~m~-------------d-------------------------~g~Er~LRD-----~r-----i~~I~egtnd 448 (634)
T KOG0137|consen 417 QIVGGMGYMR-------------D-------------------------TGLERLLRD-----AR-----ILRIFEGTND 448 (634)
T ss_pred heeccccccc-------------c-------------------------CchHHHhhh-----hh-----eeeeecCchh
Confidence 9999999999 8 999999999 99 9999999999
Q ss_pred HhhhccCCCcchhHHHHHHHHhhhHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCCCccccCcchHHHHHHHHHH
Q psy2177 494 PLKNDSLETVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKS 573 (677)
Q Consensus 494 i~~~~~~~~~~~ia~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 573 (677)
|++++ |++.++|++|.+|+.....++| .+++++.+...+ ..+..++..+..|++++||+|+.+++.++.+
T Consensus 449 vLrlf-------iAltg~q~ag~~l~~~~r~~kn--~n~gli~~~~~~-~~~~~g~~~~~~ls~hvhpsL~~saq~~e~~ 518 (634)
T KOG0137|consen 449 VLRLF-------IALTGLQHAGKHLATGVRALKN--ANPGLIGGKVSR-LRSLRGPGTGLYLSEHVHPSLQDSAQKLESS 518 (634)
T ss_pred HHHHH-------HHHHHHHhhhHHHHHHHHHhhc--CCcchhcchhhh-hhhccCCCcccccccccCHHHHHHHHHHHHH
Confidence 99999 9999999999999999999998 899999888887 6667777777789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy2177 574 VVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLG 653 (677)
Q Consensus 574 ~~~~~~~~~~~l~~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~ 653 (677)
+.+|+.+++.++.+||+.++++|..+.|||++++++|+|++++||||||||+|+|++|||+.+|++||.|+..++...+.
T Consensus 519 ~~~~~~~Ve~ll~k~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~ 598 (634)
T KOG0137|consen 519 LARFQQVVEKLLTKHGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLW 598 (634)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHhhc
Q psy2177 654 ALNSGKKLDSYTKLGDIAKNELK 676 (677)
Q Consensus 654 ~l~~~~~~~~~~~~~~~~~~~~~ 676 (677)
++.++...+.|.++..+++++|+
T Consensus 599 ~~~~~~~~~~d~~i~~~sk~v~e 621 (634)
T KOG0137|consen 599 AASSGHVVNLDRNIVSLSKTVLE 621 (634)
T ss_pred HhcccchhhhcHHHHHHHHHHHh
Confidence 99999888889999999999986
No 2
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=3.1e-94 Score=835.11 Aligned_cols=587 Identities=22% Similarity=0.303 Sum_probs=523.2
Q ss_pred hcccccccccccchHHHhhhhhh-hhhhhhhhHhhhhcccCcchhHhhccCCCCccccCCCCCC-CChhhHHHHHHHHHH
Q psy2177 10 RLEPATAKLFDVNVNTQFRRLAS-ASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEV-LTEDQSDTLKMLVDP 87 (677)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~lf~g~~~~~~~~~~p~~-l~~e~~~~~~~l~~~ 87 (677)
-+-|.-+.+++.++++.||+++| +|+ ||++..+.++.||.+++|.|++||+.+++||.+ |++|++++++..
T Consensus 18 ~~~~~r~~~~~~~~~~~~~~~~p~~s~----te~~a~~ag~~~~~~~lF~G~~~~~~l~~~p~~~Ls~ee~~~~d~~--- 90 (777)
T PRK09463 18 NLPPLRRSLISAPLLKWFRKVLPPMSQ----TEREALEAGTVWWEGELFSGKPDWKKLLNYPKPTLTAEEQAFLDGP--- 90 (777)
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCCCH----HHHHHHHcCCchhhhhhcCCCCChHHhcCCCCCCCCHHHHHHHHHH---
Confidence 35566667999999999999999 999 999999999999999999999999999999987 899997766654
Q ss_pred HHHHHHhhCCCcccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHHhhhhHH-H
Q psy2177 88 VTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGF-K 166 (677)
Q Consensus 88 ~~~f~~~~~~p~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~h~~~g~-~ 166 (677)
+++|++...+....++.+.+|+++|+.|++.||+++.+|++|||.|++..+++.++|++++.|++++..+++|++++. .
T Consensus 91 v~~l~~~~~~~~~~~~~~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~ 170 (777)
T PRK09463 91 VEELCRMVNDWQITHELADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGE 170 (777)
T ss_pred HHHHHHHHHHHHHhccccCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHH
Confidence 455554433344445567899999999999999999999999999999999999999999999988888888888875 4
Q ss_pred HHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEc---CCCC---EEEEEEEEEeecCccccCEEEE
Q psy2177 167 GILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLS---PDGK---HYILNGSKIWISNGGFAEIMTV 240 (677)
Q Consensus 167 ~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~---~dG~---~y~LnG~K~~isna~~Ad~~lV 240 (677)
.|..|||+|||++|||++++|+.++||++|||++|||+.+++|+++.+ .+|+ +|+|||+|+||||++.||+++|
T Consensus 171 lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V 250 (777)
T PRK09463 171 LLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGL 250 (777)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEE
Confidence 688899999999999999999999999999999999999998776531 2555 5999999999999999999999
Q ss_pred EEEcCCCCCCCC-cccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCC---cchHHHHHHHH
Q psy2177 241 FAQTPVKDEKTG-KVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGV---GNGFKVAMQIL 316 (677)
Q Consensus 241 ~Art~~~d~~~g-~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~---g~G~~~~~~~l 316 (677)
++++...+...| .++.|+++|+||++.|||++++.++++|++ ..+++++|+||+||.+++||.+ |+||++++..+
T Consensus 251 ~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L 329 (777)
T PRK09463 251 AFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECL 329 (777)
T ss_pred EEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHH
Confidence 999742211001 224689999999999999999999999999 5688999999999999999985 99999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHH
Q psy2177 317 NNGR-FGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAA 395 (677)
Q Consensus 317 ~~~R-l~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~~~~~a 395 (677)
+.+| +.+++.++|+++.+++.+++|+++|+|||+||++||.||++||+|.+++|+++++.+.++..+|.+..+ ..+++
T Consensus 330 ~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~G~~~-~~~aA 408 (777)
T PRK09463 330 SVGRGISLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLGEKP-SVLSA 408 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-hHHHH
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999987544 68899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhh
Q psy2177 396 ISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSD 475 (677)
Q Consensus 396 ~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~ 475 (677)
++|++++|.++++++++||+|||+||+.| ++ ++++|+|||
T Consensus 409 ~AK~~atE~a~~va~~AmQIhGG~G~~~~-----------~~-------------------------~~leR~yRd---- 448 (777)
T PRK09463 409 IAKYHLTERGRQVINDAMDIHGGKGICLG-----------PN-------------------------NFLARAYQA---- 448 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhheeCC-----------CC-------------------------ChHHHHHHh----
Confidence 99999999999999999999999999983 13 899999999
Q ss_pred hhhhhcCCccccccCchHHhhhc---cCC--CcchhHHHHHHHHhhhHHHHHHHh-cCCCCchhHHHHHHHHHHHHHhcC
Q psy2177 476 TLKMLVDPVTKFFDEVNDPLKND---SLE--TVEPNTLEGIQYAGGHLRELQKAF-KNPTAHLGLIIGEVKKRGLKSIGL 549 (677)
Q Consensus 476 ~ar~~~~pi~~i~eGtn~i~~~~---~~~--~~~~ia~~~l~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 549 (677)
++ +..|+||+|+++|.+ +|| +|||+++.++++++..+++..+++ ++|.+|+++++++..+++...++.
T Consensus 449 -ar-----i~~i~eGtn~i~r~~iifgqga~r~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (777)
T PRK09463 449 -AP-----IAITVEGANILTRSLMIFGQGAIRCHPYVLKEMEAAQNNDKQALKAFDKALFGHIGFVVSNAVRSFWLGLTG 522 (777)
T ss_pred -Cc-----chheeCcHHHHHHHHHHcCCcchhcCHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Confidence 88 999999999999988 577 999999999999999887777777 788899999999999988776654
Q ss_pred CCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2177 550 STPPSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPS 629 (677)
Q Consensus 550 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~ 629 (677)
... .. ...|++++++++++++.+++|+.+++.+|.+||++++++|+++.||+|++++||+|+|+|+|++ ..|.+.
T Consensus 523 ~~~-~~-~~~~~~~~~~~~~~~~~s~~~a~~~d~~l~~~g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~~ 597 (777)
T PRK09463 523 GRL-SA-APVDDATKRYYRQLNRLSANLALLADVSMLVLGGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRPE 597 (777)
T ss_pred CCC-CC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCch
Confidence 432 11 2368999999999999999999999999999999999999999999999999999999999998 457665
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy2177 630 ASHEQLLAELWCYEAAERVSQNLGALNSG 658 (677)
Q Consensus 630 ~~~e~~la~~~~~~~~~~~~~~~~~l~~~ 658 (677)
++ ..|+++||.++..||++++++|.+|
T Consensus 598 ~~--~~l~~~~~~~~~~~~~~~~~~~~~n 624 (777)
T PRK09463 598 AD--LPLVHWAVQDALYQAEQALDGLLRN 624 (777)
T ss_pred hH--HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 54 7999999999999999999999988
No 3
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-85 Score=734.07 Aligned_cols=493 Identities=27% Similarity=0.350 Sum_probs=441.0
Q ss_pred hhcccCcchhHhhccCCCCccccCCCC-CCCChhhHHHHHHHHHHHHHHHHhhCCCcccCcCCCCCHHHHHHHHHc-CCC
Q psy2177 44 KAAKESQSFTMNMFRGQLNTNQVFPYP-EVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDL-GAF 121 (677)
Q Consensus 44 ~~~~~~~~f~~~lf~g~~~~~~~~~~p-~~l~~e~~~~~~~l~~~~~~f~~~~~~p~~~d~~~~~p~e~~~~l~~~-Gl~ 121 (677)
....++.||+++||.|+++++++|||| +++++||+++++.+++++++ .++++ ||+
T Consensus 10 ~~~~~~~sf~~~lF~g~~~~~~~~pyP~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~l~Gl~ 66 (520)
T PTZ00457 10 RQYVRHASYAAGLFNFKIVPEEMFPYPCRKLDGDEAENLQSLLEQIRS-----------------------NDKILGNLY 66 (520)
T ss_pred cccccCccHHHHhhCcccchhhcCCCCCCCCCHHHHHHHHHHHHHHHh-----------------------chHhcCCcc
Confidence 445678999999999999999999999 66899999999999998877 36799 999
Q ss_pred CCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCC
Q psy2177 122 SLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASG 201 (677)
Q Consensus 122 ~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~G 201 (677)
|+.+|++|||.|++..+++.+.|++++.+++..+.+..|++++..+|..+|+++||++|||++++|+.++++|+|| ++|
T Consensus 67 gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~AltE-~aG 145 (520)
T PTZ00457 67 GARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWATEE-GCG 145 (520)
T ss_pred CCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEEeCC-CCC
Confidence 9999999999999999999999999998877766666787777778888999999999999999999999999998 999
Q ss_pred CCCCCCceEEEEcCCCCEEEEEEEEEeecCccccCEEEEEEEcCCCCCC-CC-cccCeEEEEEEecCCCCeeeCCCCCcC
Q psy2177 202 SDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEK-TG-KVVDKVTAFIVERSFGGVTSGPPEKKM 279 (677)
Q Consensus 202 SD~~~~~T~A~~~~dG~~y~LnG~K~~isna~~Ad~~lV~Art~~~d~~-~g-~~~~gis~FlVp~~~~GV~v~~~~~~~ 279 (677)
||+..++|+|+++++| +|+|||+|.|+ |++.||+++|+|+++..+++ .| ...+++++|+||++.|||++..
T Consensus 146 SD~a~i~TtA~~~~gg-~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVtv~~----- 218 (520)
T PTZ00457 146 SDISMNTTKASLTDDG-SYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVSVNG----- 218 (520)
T ss_pred CccccceeEEEEcCCC-eEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceEEec-----
Confidence 9999999999986444 59999999966 89999999999998532111 12 1135799999999999999963
Q ss_pred CCCCCCceEEEEcceecccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHH
Q psy2177 280 GIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQ 359 (677)
Q Consensus 280 G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq 359 (677)
++|+|||| |.+++||.+|+||+.++..++.+|+.+++.++|+++++++.+++|++ +|.+|
T Consensus 219 -------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~-----------~QaVq 278 (520)
T PTZ00457 219 -------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA-----------EEGAT 278 (520)
T ss_pred -------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhHHH
Confidence 58999997 99999999999999999999999999999999999999999999997 37899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHH---HHHHHHHHHHHHHhCCcccccchhhhhhHHHHhH
Q psy2177 360 EKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFAS---EAAWYVTDEAIQILGGINLLLGRLASASAAVKAK 436 (677)
Q Consensus 360 ~~La~m~~~~~aa~al~~~~a~~~d~~~~~~~~~~a~aK~~as---e~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~ 436 (677)
++||+|.+.++++|+++|.+++.+|.+..|..++++++|+|++ |.+|.++++++| +
T Consensus 279 ~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~------------- 337 (520)
T PTZ00457 279 DTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP--------P------------- 337 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------C-------------
Confidence 9999999999999999999999999987788999999999999 999999999988 6
Q ss_pred HHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCccccccCchHHhhhccCCCcchhHHHHHHHHhh
Q psy2177 437 EEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGIQYAGG 516 (677)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~~~~~~~~ia~~~l~~~~~ 516 (677)
+ +|+||++|| +| |++||||||||++ . +++| +|
T Consensus 338 ~-------------------------~~~E~~~rd-----~r-----i~~i~egs~~~l~-~----------~~~~-ag- 369 (520)
T PTZ00457 338 S-------------------------TTLEKCFAN-----AR-----LFLSMMESRDFLY-S----------SAVC-CG- 369 (520)
T ss_pred C-------------------------ccHHHHHHH-----HH-----HHHHhhhHHHHHH-H----------HHHh-hc-
Confidence 7 999999999 99 9999999999998 3 5666 55
Q ss_pred hHHHHHHHhcCCCCchhHHHHHHHH------HHHHHhcCCCCCCCccccCcc-hHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2177 517 HLRELQKAFKNPTAHLGLIIGEVKK------RGLKSIGLSTPPSLHHVVHAN-LAESGVLCSKSVVLFGEAVESLLLKYG 589 (677)
Q Consensus 517 ~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~g 589 (677)
..++|++++++.+ +....++... .||+ |.++++++++++.+|+.+++.+|.|||
T Consensus 370 ------------~~~~g~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~ 430 (520)
T PTZ00457 370 ------------VEDYGLFFQRASTLQMMQARTLRSLGVRD-------RVPIKNLPDCSLIDEAVVAFGNAVEATFVRSG 430 (520)
T ss_pred ------------ccchHHHHHHhhhhhhHHHHHHHhcCCCC-------CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2556666655554 6655555432 2777 999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHH
Q psy2177 590 KGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKLGD 669 (677)
Q Consensus 590 ~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 669 (677)
++|+++|++|+||+|++++||+|+|++|||++++++|+|+++||+.||++||.++.+||++++.+|++| ..++|+++++
T Consensus 431 ~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~-~~~~~~~~~~ 509 (520)
T PTZ00457 431 SQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV-GKTADDSYKR 509 (520)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 4555889999
Q ss_pred HHHHhhc
Q psy2177 670 IAKNELK 676 (677)
Q Consensus 670 ~~~~~~~ 676 (677)
||++||+
T Consensus 510 ~a~~~~~ 516 (520)
T PTZ00457 510 IALEMCD 516 (520)
T ss_pred HHHHHHH
Confidence 9999986
No 4
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=7.2e-84 Score=746.08 Aligned_cols=582 Identities=20% Similarity=0.274 Sum_probs=506.5
Q ss_pred hhcccccccccccchHHHhhhhhh-hhhhhhhhHhhhhcccCcchhHhhccCCCCccccCCCCCC-CChhhHHHHHHHHH
Q psy2177 9 ERLEPATAKLFDVNVNTQFRRLAS-ASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEV-LTEDQSDTLKMLVD 86 (677)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~lf~g~~~~~~~~~~p~~-l~~e~~~~~~~l~~ 86 (677)
-.+.|.-+.+++.++++.||+++| +|+ ||++..+..+++|.+++|.|++||+.+++||.+ |++|++++++..++
T Consensus 16 ~~~~~~r~~~~~~~~~~~~~~~~p~~s~----te~~a~~a~~~~~~~~lf~G~~~~~~l~~~p~~~l~~eeq~fl~~~v~ 91 (774)
T PRK13026 16 FAVKPLRRQFITRPVFKFFKKVLPPLSD----TEREAMEAGDVWWEGELFSGKPDWQKLHSYPKPTLTAEEQAFIDNEVE 91 (774)
T ss_pred hccHHHHHHHHhHHHHHHHHhhCCCCCH----HHHHHHhCCCcchhhhhcCCCCChhhcCCCCccccCHHHHHHHHHHHH
Confidence 345677677999999999999999 999 999999999999999999999999999999986 89999988887766
Q ss_pred HHHHHHHhhCCCcccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHHhhhhHH-
Q psy2177 87 PVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGF- 165 (677)
Q Consensus 87 ~~~~f~~~~~~p~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~h~~~g~- 165 (677)
++.+++.+ +...++.+.+|+++|+.|++.||+++.+|++|||.|++..+++.++|++++.+.++++.+.+|++++.
T Consensus 92 ~l~~~~~e---~~~~~~~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~ 168 (774)
T PRK13026 92 TLLTMLDD---WDIVQNRKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPG 168 (774)
T ss_pred HHHhhhhh---hhhhhhhcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 66665554 34446678999999999999999999999999999999999999999999888888887888888774
Q ss_pred HHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEE---cCCCC---EEEEEEEEEeecCccccCEEE
Q psy2177 166 KGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVL---SPDGK---HYILNGSKIWISNGGFAEIMT 239 (677)
Q Consensus 166 ~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~---~~dG~---~y~LnG~K~~isna~~Ad~~l 239 (677)
..|..|||+|||++|||++++|+.++|||+|||++|||+.+++|+|+. ..||+ +|+|||+|+||||++.||+++
T Consensus 169 ~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~ 248 (774)
T PRK13026 169 ELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLG 248 (774)
T ss_pred HHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEE
Confidence 578889999999999999999999999999999999999999988764 23665 599999999999999999998
Q ss_pred EEEEcCCCCCCCC-cccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCC---cchHHHHHHH
Q psy2177 240 VFAQTPVKDEKTG-KVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGV---GNGFKVAMQI 315 (677)
Q Consensus 240 V~Art~~~d~~~g-~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~---g~G~~~~~~~ 315 (677)
|.+++...+...| .++.|+++|+||++.|||++++.++++|+++. +++++||||+||.+++||++ |+||++++..
T Consensus 249 v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~ 327 (774)
T PRK13026 249 LAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVEC 327 (774)
T ss_pred EEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHH
Confidence 8887542221111 23468999999999999999999999999975 57899999999999999975 9999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhCCCCchH
Q psy2177 316 LNNGR-FGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALL---HYVTESLAYMISGNMDNGSQDYH 391 (677)
Q Consensus 316 l~~~R-l~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~---~~aa~al~~~~a~~~d~~~~~~~ 391 (677)
++.+| +.+++.++|+++.+++.+++|+++|+|||+||+++|.||++||+|.+. +++++.+++. .+|.+.. ..
T Consensus 328 L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~---a~D~G~~-~~ 403 (774)
T PRK13026 328 LSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTT---GLDLGVK-PS 403 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCC-ch
Confidence 99999 899999999999999999999999999999999999999999999995 4555666555 4566543 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhh
Q psy2177 392 LEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTE 471 (677)
Q Consensus 392 ~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD 471 (677)
.+++++|++++|.++.+++++||+|||.||+.| ++ ++++|+|||
T Consensus 404 ~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e-----------~~-------------------------~~ler~yRd 447 (774)
T PRK13026 404 VVTAIAKYHMTELARDVVNDAMDIHAGKGIQLG-----------PK-------------------------NYLGHAYMA 447 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchheeeCC-----------CC-------------------------ChHHHHHHH
Confidence 889999999999999999999999999999983 13 889999999
Q ss_pred hhhhhhhhhcCCccccccCchHHhhhc---cCC--CcchhHHHHHHHHhh-----hHHHHHHHhcCCCCchhHHHHHHHH
Q psy2177 472 DQSDTLKMLVDPVTKFFDEVNDPLKND---SLE--TVEPNTLEGIQYAGG-----HLRELQKAFKNPTAHLGLIIGEVKK 541 (677)
Q Consensus 472 ~~~~~ar~~~~pi~~i~eGtn~i~~~~---~~~--~~~~ia~~~l~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
++ +..|+||+|+++|.+ +|| +|||..+..++.+.. .+.++.+.+. +|.++.+.+..+
T Consensus 448 -----ar-----i~~i~eGtnei~R~l~ifgqga~rchp~~~~e~~a~~~~~~~~~~~~f~~~~~---~h~~~~~~n~~~ 514 (774)
T PRK13026 448 -----VP-----IAITVEGANILTRNLMIFGQGATRCHPYVLAEMEAAAMEDEHEGLEAFDSLLF---KHIGYAARNAFR 514 (774)
T ss_pred -----hh-----hhheeCcHHHHHHHHHHhhccHhhCCchHHHHHHHhhCCChhhHHHHHHHHHH---HHHHHHHHhHHH
Confidence 88 999999999999985 777 999999999987753 4788888887 899999999999
Q ss_pred HHHHHhcCCCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2177 542 RGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATR 621 (677)
Q Consensus 542 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~ 621 (677)
.+...+......+. ......+.+.+.+.+..+.|+..++..|...|.+++.++++..||+|+.++||.++++|.|-..
T Consensus 515 ~~~~~~~~~~~~~~--p~~~~~~~y~~~~~~~s~~~a~~~d~~~~~lgg~lk~~e~~s~rl~d~ls~ly~~~a~lk~~~~ 592 (774)
T PRK13026 515 ALFSALTGSRFISA--PVSGETAQYYKDMSRLSAALALLADLSMLILGGDLKRKEMLSARLGDVLSQLYLASATLKRFED 592 (774)
T ss_pred HHHHHhccCccCCC--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88766543321111 1234578899999999999999999999999999999999999999999999999999999764
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy2177 622 SLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSG 658 (677)
Q Consensus 622 ~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~ 658 (677)
. | ....+..+.++-+..+..++.+.++++.+|
T Consensus 593 ~---~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~n 624 (774)
T PRK13026 593 N---G--RQQDDLPAVHYAMQDCLHLAAKALDEFLRN 624 (774)
T ss_pred c---C--CChhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 4 344567899998999999999999999887
No 5
>KOG0139|consensus
Probab=100.00 E-value=2.1e-76 Score=606.88 Aligned_cols=365 Identities=35% Similarity=0.606 Sum_probs=347.2
Q ss_pred CCCCC-CChhhHHHHHHHHHHHHHHHHhhCCC--cccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHH
Q psy2177 68 PYPEV-LTEDQSDTLKMLVDPVTKFFDEVNDP--LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVE 144 (677)
Q Consensus 68 ~~p~~-l~~e~~~~~~~l~~~~~~f~~~~~~p--~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e 144 (677)
|+|-. |+|++ .++++.+++|.++.+.| .+.|++..+|+.+++.+.++|++|+.+|+||||.|++...+..++|
T Consensus 31 ~~pl~~l~E~e----~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~E 106 (398)
T KOG0139|consen 31 PAPLQILSETE----QMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIE 106 (398)
T ss_pred CCchhhcCcHH----HHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHH
Confidence 44432 67777 68999999999999998 5789999999999999999999999999999999999999999999
Q ss_pred HHhccCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEE
Q psy2177 145 IVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNG 224 (677)
Q Consensus 145 ~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG 224 (677)
++++.|+|+++.+.+|+++...+|..|||++||++|+|.+ .|+.+++||++||++|||+..+.|+|++ +|++|+|||
T Consensus 107 Eisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~--~Gd~~viNG 183 (398)
T KOG0139|consen 107 EISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKK--DGDDYVING 183 (398)
T ss_pred HHhccCccceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhh--cCCeEEEec
Confidence 9999999999999999999889999999999999999986 4678999999999999999999999998 889999999
Q ss_pred EEEeecCccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCC
Q psy2177 225 SKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGG 304 (677)
Q Consensus 225 ~K~~isna~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~ 304 (677)
+|+||||+..||+++|+|.++ |..+ ++|+++|+||+++||++++.+++|+|+|++.|+.++|+||+||.+++||+
T Consensus 184 sKmWItN~~~A~~~lVfan~d---~~~~--~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe 258 (398)
T KOG0139|consen 184 SKMWITNAGEADWFLVFANAD---PSKG--YKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGE 258 (398)
T ss_pred ceeeecCCcccceEEEEEecC---hhhc--cCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhccc
Confidence 999999999999999999883 3444 47999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2177 305 VGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMD 384 (677)
Q Consensus 305 ~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d 384 (677)
+|.|++.+++.||.+|+..+++.+|.++.|++.++.|+++|.|||++|.++|.+|++||+|.++++++|+++|+++++-|
T Consensus 259 ~G~GykyAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~ 338 (398)
T KOG0139|consen 259 YGKGYKYAIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKD 338 (398)
T ss_pred CCcchHHHHHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCC
Q psy2177 385 NGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFP 464 (677)
Q Consensus 385 ~~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (677)
.+. ++..+++|+|++++|.+..+++.|+|++||.||++ + +|
T Consensus 339 ~G~-pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~-------------d-------------------------~p 379 (398)
T KOG0139|consen 339 QGL-PFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTK-------------D-------------------------FP 379 (398)
T ss_pred cCC-chHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccc-------------c-------------------------cc
Confidence 985 67899999999999999999999999999999999 8 99
Q ss_pred hhhhhhhhhhhhhhhhcCCccccccCchH
Q psy2177 465 YPEVLTEDQSDTLKMLVDPVTKFFDEVND 493 (677)
Q Consensus 465 ler~~RD~~~~~ar~~~~pi~~i~eGtn~ 493 (677)
.||+||| +| |..|||||.+
T Consensus 380 aek~yRD-----ar-----I~~IyeGtsn 398 (398)
T KOG0139|consen 380 AEKFYRD-----AR-----IGEIYEGTSN 398 (398)
T ss_pred HHHHhhh-----ce-----eeeeecCCCC
Confidence 9999999 99 9999999974
No 6
>KOG0140|consensus
Probab=100.00 E-value=2.2e-74 Score=582.49 Aligned_cols=375 Identities=34% Similarity=0.494 Sum_probs=356.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhCCC--cccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccC
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVNDP--LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGND 150 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~~p--~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d 150 (677)
|+++| +++.+.+++|.++++-| .+.|+.+.+|.++++...++||....+|++|||+|++..+.+.+.|+|++.|
T Consensus 28 L~e~q----ke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGC 103 (408)
T KOG0140|consen 28 LTEDQ----KEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGC 103 (408)
T ss_pred cchHH----HHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccc
Confidence 78888 57889999999999877 5789999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeec
Q psy2177 151 LAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS 230 (677)
Q Consensus 151 ~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~is 230 (677)
.++...++.| +++.++|..+|++|||++|||+|+....++++|+|||++|||+++++|+|++ .|++|+|||+|.|||
T Consensus 104 tg~~~~I~~~-~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~K--kGDeYiiNGsKawIt 180 (408)
T KOG0140|consen 104 TGIQTAISIH-NLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEK--KGDEYIINGSKAWIT 180 (408)
T ss_pred hhHHHHHhcc-chhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhh--cCCEEEEcCceeeee
Confidence 9999888886 5678999999999999999999999999999999999999999999999998 788999999999999
Q ss_pred CccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHH
Q psy2177 231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310 (677)
Q Consensus 231 na~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~ 310 (677)
|+++|+|++|+||+++ ||+.. ..+++++|+|+.|+||++.++.+.+||.|.++|..|+|+||+||.+|+||.+|.||+
T Consensus 181 g~G~anwyfVlaRtd~-~pk~p-~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFk 258 (408)
T KOG0140|consen 181 GAGHANWYFVLARTDP-DPKTP-AGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFK 258 (408)
T ss_pred cCCccceEEEEEecCC-CCCCC-CCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccce
Confidence 9999999999999965 33322 236899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCch
Q psy2177 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDY 390 (677)
Q Consensus 311 ~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~ 390 (677)
++|..++-+|..++++++|.++++++.+++|+.+|++||.||++||.+|.+||+|+..++.+|.+.|.+++.+|.+.++
T Consensus 259 vAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~- 337 (408)
T KOG0140|consen 259 VAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRN- 337 (408)
T ss_pred ehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhh
Q psy2177 391 HLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLT 470 (677)
Q Consensus 391 ~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~R 470 (677)
...++|+|.|+++.+..++..++|++||.||.. + ||+|+++|
T Consensus 338 sy~aSiAK~fA~D~an~~at~AvQifGG~Gfn~-------------e-------------------------YpVeklmR 379 (408)
T KOG0140|consen 338 SYYASIAKLFATDTANQAATNAVQIFGGNGFNK-------------E-------------------------YPVEKLMR 379 (408)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHhhccCCccc-------------c-------------------------ccHHHHHh
Confidence 788999999999999999999999999999999 9 99999999
Q ss_pred hhhhhhhhhhcCCccccccCchHHhhhccCCCcchhHHHHHH
Q psy2177 471 EDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGIQ 512 (677)
Q Consensus 471 D~~~~~ar~~~~pi~~i~eGtn~i~~~~~~~~~~~ia~~~l~ 512 (677)
| +| |..||||||+|+|+. |++.-++
T Consensus 380 D-----ak-----i~QIyEGTsqiqRlv-------IsR~ll~ 404 (408)
T KOG0140|consen 380 D-----AK-----IYQIYEGTSQIQRLV-------ISRSLLQ 404 (408)
T ss_pred h-----hh-----hhHhhhchHHHHHHH-------HHHHHHH
Confidence 9 99 999999999999999 8876654
No 7
>KOG0141|consensus
Probab=100.00 E-value=1e-70 Score=555.98 Aligned_cols=368 Identities=32% Similarity=0.479 Sum_probs=350.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhCCC--cccCcCCCCC--HHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhc
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVNDP--LKNDSLETVE--PNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGG 148 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~~p--~~~d~~~~~p--~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~ 148 (677)
|++|+ +.+.+.+++|+++++.| .++|....++ +++|+.+.+.|++|+..|++|||.|++....+.++|++++
T Consensus 41 ~~~e~----~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sr 116 (421)
T KOG0141|consen 41 LSDEQ----DQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISR 116 (421)
T ss_pred CCHHH----HHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHh
Confidence 67888 68999999999999988 5688888884 5899999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEe
Q psy2177 149 NDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIW 228 (677)
Q Consensus 149 ~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~ 228 (677)
++.+++..+++|..++...|...|++|||++|||+|.+|+-+++.|||||++|||+.+++++|++ +|++|+|||+|.|
T Consensus 117 a~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek--~g~~yiLNGsK~w 194 (421)
T KOG0141|consen 117 ASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEK--KGDDYILNGSKFW 194 (421)
T ss_pred hcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeecee--cCCcEEecCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998 6777999999999
Q ss_pred ecCccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcch
Q psy2177 229 ISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNG 308 (677)
Q Consensus 229 isna~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G 308 (677)
|||++.||+++|.|+|+...+ +...||++|||++.+||++..+.-+|+||||++|+++.|+|++||++++||++++|
T Consensus 195 itNG~~advliVyAkTd~~a~---~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkG 271 (421)
T KOG0141|consen 195 ITNGPDADVLIVYAKTDHSAV---PPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKG 271 (421)
T ss_pred EecCCCCcEEEEEEecCCCCC---CCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCce
Confidence 999999999999999965322 22379999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy2177 309 FKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQ 388 (677)
Q Consensus 309 ~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~ 388 (677)
+.++|.-|...|+.+++..+|.++.+++.+..|+++|++||++|+.||.+|.++|+|.+.+-+.|+.+|.++..-|.+..
T Consensus 272 vYvlMsgLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~ 351 (421)
T KOG0141|consen 272 VYVLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNV 351 (421)
T ss_pred EEEEecCCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhh
Q psy2177 389 DYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEV 468 (677)
Q Consensus 389 ~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~ 468 (677)
+ ...++.+++|++|.+-.|+.+|+|++||.||+. + +|+.|+
T Consensus 352 ~-~kdcag~il~aaE~~tqVald~iQ~~GGnGYin-------------e-------------------------yp~gr~ 392 (421)
T KOG0141|consen 352 D-PKDCAGVILYAAEKATQVALDAIQCLGGNGYIN-------------E-------------------------YPTGRL 392 (421)
T ss_pred C-hhhhhhhhhhHhhhhHHHHHHHHhhccCccccc-------------c-------------------------cchhhh
Confidence 5 678999999999999999999999999999999 9 999999
Q ss_pred hhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 469 LTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 469 ~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
+|| ++ +..|+.||+||.|.+
T Consensus 393 lrD-----Ak-----lyeIgaGTsEirr~l 412 (421)
T KOG0141|consen 393 LRD-----AK-----LYEIGAGTSEIRRLL 412 (421)
T ss_pred hhh-----ce-----eeeccCChHHHHHHH
Confidence 999 99 999999999999999
No 8
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=1.9e-68 Score=588.91 Aligned_cols=408 Identities=66% Similarity=1.041 Sum_probs=378.2
Q ss_pred chhHhhccCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhCCCcccCcCCCCCHHHHHHHHHcCCCCCCCcccCC
Q psy2177 51 SFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130 (677)
Q Consensus 51 ~f~~~lf~g~~~~~~~~~~p~~l~~e~~~~~~~l~~~~~~f~~~~~~p~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyG 130 (677)
||.+|+|+|.++..++|+|||+++.+..+..+++++.+++|+++.+.|...|+.+.+|+++|+.|++.||+++.+|++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~G 80 (409)
T cd01161 1 SFALNMFLGDIVTKQVFPYPSVLTEEQTEELNMLVGPVEKFFEEVNDPAKNDQLEKIPRKTLTQLKELGLFGLQVPEEYG 80 (409)
T ss_pred ChhhHhhcCCcchhhcCCCccccCccCCHHHHHHHHHHHHHHHHhCCchhhccccCCCHHHHHHHHhCCCCCCCCChhhC
Confidence 68999999999999999999987755555568899999999999998877788889999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceE
Q psy2177 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTR 210 (677)
Q Consensus 131 G~Gls~~~~~~v~e~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~ 210 (677)
|.|++..+++.++|++++ |+++++.+..|.+++...+..+|+++||++|||++++|++++++++|||.+|||+..++|+
T Consensus 81 G~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~ 159 (409)
T cd01161 81 GLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTT 159 (409)
T ss_pred CCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeE
Confidence 999999999999999999 9999888888877766678889999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEEEEeecCccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEE
Q psy2177 211 AVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVY 290 (677)
Q Consensus 211 A~~~~dG~~y~LnG~K~~isna~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~ 290 (677)
|+++++|++|+|||+|+|+||+..||+++|+|+++..++ +|...+++++|+||++.|||++.+.|+++|++++++++|.
T Consensus 160 a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~~~~-~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~ 238 (409)
T cd01161 160 AVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDA-TGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVY 238 (409)
T ss_pred EEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCCCCC-CCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEE
Confidence 999888888999999999999999999999999853222 2322357899999999999999999999999999999999
Q ss_pred EcceecccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHH
Q psy2177 291 YEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHY 370 (677)
Q Consensus 291 fddV~VP~~~lLG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~ 370 (677)
|+||+||.+++||.+++|+..++..++.+|+.+++.++|+++++++.+++|+++|+|||+||.++|.+|++|++|.+.++
T Consensus 239 ~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~ 318 (409)
T cd01161 239 FEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQY 318 (409)
T ss_pred eccEEECHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHH
Q psy2177 371 VTESLAYMISGNMDNGSQ-DYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFT 449 (677)
Q Consensus 371 aa~al~~~~a~~~d~~~~-~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (677)
+++++++.++..+|.+.. +....++++|+++++.+.+++++++|++||.||.. +
T Consensus 319 aar~l~~~a~~~~d~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~-------------~------------ 373 (409)
T cd01161 319 ATESMAYMTSGNMDRGLKAEYQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMR-------------E------------ 373 (409)
T ss_pred HHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-------------C------------
Confidence 999999999999988653 45778999999999999999999999999999999 8
Q ss_pred hhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCccccccCchHHhhhccCCCcchhHHHHHHHHh
Q psy2177 450 MNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGIQYAG 515 (677)
Q Consensus 450 ~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~~~~~~~~ia~~~l~~~~ 515 (677)
+|++|+||| ++ +..|++|+|++++.+ |+...++++|
T Consensus 374 -------------~~l~r~~Rd-----~~-----~~~~~~G~~~~~~~~-------ia~~~l~~~~ 409 (409)
T cd01161 374 -------------YGVERVLRD-----LR-----IFRIFEGTNEILRLF-------IALTGLQHAG 409 (409)
T ss_pred -------------CcHHHHHHh-----hh-----cceeecCHHHHHHHH-------HHHHHhhhCC
Confidence 999999999 99 999999999999999 8887776654
No 9
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=6.9e-61 Score=524.70 Aligned_cols=361 Identities=28% Similarity=0.421 Sum_probs=335.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhCCCc--ccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccC
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGND 150 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~~p~--~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d 150 (677)
+++|| +++++.+++|+++++.|. +.|+...+|+++|+.|.+.||+++ +|++|||.|++..++..++|++++.|
T Consensus 13 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~ 87 (386)
T cd01151 13 LTEEE----RAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVD 87 (386)
T ss_pred CCHHH----HHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhhC
Confidence 67777 578899999999988774 345667899999999999999999 99999999999999999999999999
Q ss_pred chhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeec
Q psy2177 151 LAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS 230 (677)
Q Consensus 151 ~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~is 230 (677)
.++++.+.+|..++...|..+|+++||++|+|++++|++++++++|||++|||+..+.|+|+++ |++|+|||+|+|||
T Consensus 88 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~lnG~K~~is 165 (386)
T cd01151 88 SGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKD--GGGYKLNGSKTWIT 165 (386)
T ss_pred hhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEE--CCEEEEEEEEEeec
Confidence 9988887777766667788999999999999999999999999999999999999999999984 55699999999999
Q ss_pred CccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHH
Q psy2177 231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310 (677)
Q Consensus 231 na~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~ 310 (677)
|++.||+++|+|+++. + +++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||. ++|+.
T Consensus 166 ~~~~Ad~~lv~ar~~~---~-----~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~ 236 (386)
T cd01151 166 NSPIADVFVVWARNDE---T-----GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLR 236 (386)
T ss_pred CCCcCCEEEEEEEECC---C-----CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHH
Confidence 9999999999999742 1 3688999999999999999999999999999999999999999999986 58999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCch
Q psy2177 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDY 390 (677)
Q Consensus 311 ~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~ 390 (677)
..+..++..|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+++++++++++.++..+|.+.. .
T Consensus 237 ~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~-~ 315 (386)
T cd01151 237 GPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKA-T 315 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-c
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999987643 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhh
Q psy2177 391 HLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLT 470 (677)
Q Consensus 391 ~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~R 470 (677)
..+++++|.++++.+++++++++|++||.||.. + +|++|+||
T Consensus 316 ~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~-------------~-------------------------~~l~r~~R 357 (386)
T cd01151 316 PEQISLLKRNNCGKALEIARTAREMLGGNGISD-------------E-------------------------YHIIRHMV 357 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCC-------------C-------------------------CHHHHHHH
Confidence 567899999999999999999999999999999 8 99999999
Q ss_pred hhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 471 EDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 471 D~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
| ++ +..+++|++++++..
T Consensus 358 D-----~~-----~~~~~~G~~~~~~~~ 375 (386)
T cd01151 358 N-----LE-----SVNTYEGTHDIHALI 375 (386)
T ss_pred h-----hh-----cceecCCHHHHHHHH
Confidence 9 99 999999999999987
No 10
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-59 Score=539.86 Aligned_cols=522 Identities=18% Similarity=0.206 Sum_probs=398.1
Q ss_pred hhcccCcchhHhhccCCCC-ccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhCCCc--ccCcCC---------CCC---
Q psy2177 44 KAAKESQSFTMNMFRGQLN-TNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLE---------TVE--- 108 (677)
Q Consensus 44 ~~~~~~~~f~~~lf~g~~~-~~~~~~~p~~l~~e~~~~~~~l~~~~~~f~~~~~~p~--~~d~~~---------~~p--- 108 (677)
..+.++..|+.+...+--+ +... .|.+ ++ .+.++++++.+++|+++++.|. +.|+++ ..|
T Consensus 27 ~~~~~d~~f~l~~~~~~~~~~~~~-~~~~-~~---~~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~ 101 (622)
T PTZ00456 27 QPRIRDVQFLVEEVFNMYDHYEKL-GKTD-VT---KELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGF 101 (622)
T ss_pred cCCHHHHHHHHHHHHCcHHHHHhC-Cccc-CC---HHHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhH
Confidence 4678888898888665322 2233 4544 44 4557899999999999988773 234333 236
Q ss_pred HHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCC
Q psy2177 109 PNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGK 188 (677)
Q Consensus 109 ~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge 188 (677)
++.|+.+.+.||+++.+|++|||.|++......+.|.++..++++++....+. .+...|..+|+++||++|||++.+|+
T Consensus 102 ~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe 180 (622)
T PTZ00456 102 KEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGE 180 (622)
T ss_pred HHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence 48999999999999999999999999988666667777777777665444332 22467888999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeecCcccc----CEEEEEEEcCCCCCCCCcccCeEEEEEEe
Q psy2177 189 EFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFA----EIMTVFAQTPVKDEKTGKVVDKVTAFIVE 264 (677)
Q Consensus 189 ~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isna~~A----d~~lV~Art~~~d~~~g~~~~gis~FlVp 264 (677)
|++++|+|||++|||+..++|+|++++|| +|+|||+|+|||+++++ ++++|+||++.. ++| .+|+++|+||
T Consensus 181 ~~~t~alTEp~aGSD~~~l~T~A~~~gdG-~y~L~G~K~fIt~g~~~~~~n~~~lVlAr~~~~--~~g--~~GiSlFlVp 255 (622)
T PTZ00456 181 WSGTMCLTEPQCGTDLGQVKTKAEPSADG-SYKITGTKIFISAGDHDLTENIVHIVLARLPNS--LPT--TKGLSLFLVP 255 (622)
T ss_pred hhhhhhccCCccCCCcccCeeEEEECCCC-cEEEeeEEEEecCCchhhccCcEEEEEEEecCC--CCC--CCceEEEEEe
Confidence 99999999999999999999999996555 59999999999999863 688999998632 123 3689999999
Q ss_pred cCC----------CCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2177 265 RSF----------GGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSV 334 (677)
Q Consensus 265 ~~~----------~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~a 334 (677)
++. +||++.+.++|||++++++++|.|+|+ .+++||.+++|++.++.+++.+|+.+++.++|+++++
T Consensus 256 ~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~~---~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~A 332 (622)
T PTZ00456 256 RHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFENS---VGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELA 332 (622)
T ss_pred CCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeCh---hHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 865 478888999999999999999999994 6899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccc------------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC--Cc----------h
Q psy2177 335 TKKAVDHATQRVQF------------GRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGS--QD----------Y 390 (677)
Q Consensus 335 l~~a~~~a~~R~qf------------g~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~--~~----------~ 390 (677)
++.+++|+++|+|| ++||+++|.||++|++|.+.++++++++|.++..+|.+. .+ .
T Consensus 333 l~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~ 412 (622)
T PTZ00456 333 FQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEI 412 (622)
T ss_pred HHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhhh
Confidence 99999999999995 788999999999999999999999999999999988642 11 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhh
Q psy2177 391 HLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLT 470 (677)
Q Consensus 391 ~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~R 470 (677)
.+.++++|.|+++.+.+++++++|+|||+||++ + +|++|+||
T Consensus 413 ~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~-------------e-------------------------~~ler~~R 454 (622)
T PTZ00456 413 GFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIK-------------G-------------------------NGMEQILR 454 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCccC-------------C-------------------------chHHHHHH
Confidence 457899999999999999999999999999999 8 99999999
Q ss_pred hhhhhhhhhhcCCccccccCchHHhhhccCCCcchhHHHHH-HHHhhhHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcC
Q psy2177 471 EDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGI-QYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGL 549 (677)
Q Consensus 471 D~~~~~ar~~~~pi~~i~eGtn~i~~~~~~~~~~~ia~~~l-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (677)
| +| +.+|+||||+|++++. |++..+ ..-|+.+..+.+.+ .+.+..
T Consensus 455 D-----ar-----i~~i~eGt~~iq~~dl------i~rkllg~~~g~~~~~~~~~~------------------~~~~~~ 500 (622)
T PTZ00456 455 D-----AR-----IGTLYEGTTGIQALDF------IGRKVLSLKGGNEVARFGKRV------------------SKLVRA 500 (622)
T ss_pred H-----hh-----cccccCChHHHHHHHH------HHHHhhCCCCcHHHHHHHHHH------------------HHHHHH
Confidence 9 99 9999999999998641 444333 22233333332222 111111
Q ss_pred CCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcC
Q psy2177 550 STPPSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRA---TRSLNKN 626 (677)
Q Consensus 550 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra---~~~~~~~ 626 (677)
.. ...+.+...+..+.+.+..+..++..++.....+...-.-...++=+...+++....-+..| .+.+..+
T Consensus 501 ~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~g~~~~~~~~~~~a~~a~~~~~~~ 574 (622)
T PTZ00456 501 HL------FSRGALGQYARRLWLLQKQWRLATTRVKMMAMSDRDAVGAASEDFLMYTGYMVLGYYWLRMAEVAQKKVAAG 574 (622)
T ss_pred hc------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 10 01235777888888999999988888876655442211111111112222222222212221 1222222
Q ss_pred CC---CchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2177 627 LP---SASHEQLLAELWCYEAAERVSQNLGALNS 657 (677)
Q Consensus 627 ~~---~~~~e~~la~~~~~~~~~~~~~~~~~l~~ 657 (677)
.. ...-.+..|+.|+..-.-++...+..+.+
T Consensus 575 ~~~~~f~~~k~~~a~~~~~~~lp~~~~~~~~~~~ 608 (622)
T PTZ00456 575 QDADGFYQCKVDTCQYVFQRILPRADAHFQIMQA 608 (622)
T ss_pred CChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 11 12345668999999999999998888876
No 11
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=7.8e-61 Score=523.44 Aligned_cols=363 Identities=23% Similarity=0.286 Sum_probs=324.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhCCCcc----cCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhc
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLK----NDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGG 148 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~~p~~----~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~ 148 (677)
+++|| +++.+.+++|+++.+.+.. .|+.+.+|+++|+.|.+.||+++.+|++|||.|++..+++.+.|++++
T Consensus 4 ~~~eq----~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~ 79 (378)
T TIGR03203 4 LSEEQ----RLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGK 79 (378)
T ss_pred CCHHH----HHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhC
Confidence 56777 6789999999998876632 356778999999999999999999999999999999999999999998
Q ss_pred cCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEe
Q psy2177 149 NDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIW 228 (677)
Q Consensus 149 ~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~ 228 (677)
.+.... .+ .+..++...+..+|+++||++|||++++|+.+.++++|||++|||+.+++|+|++ +|++|+|||+|+|
T Consensus 80 ~~~~~~-~~-~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~--~g~~~~l~G~K~~ 155 (378)
T TIGR03203 80 ALVLEP-YL-ATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKK--TGDGWVIDGEKFV 155 (378)
T ss_pred cccchH-HH-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEE--cCCEEEEEeEEEE
Confidence 764322 22 2222344567789999999999999999999999999999999999999999998 5567999999999
Q ss_pred ecCccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcch
Q psy2177 229 ISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNG 308 (677)
Q Consensus 229 isna~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G 308 (677)
|||++.||+++|+|+++..+ . +.+++++|+||++.|||++.+.++++|. .+++|+||||+||.+++||.+++|
T Consensus 156 vt~a~~Ad~~lv~ar~~~~~--~--~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g 228 (378)
T TIGR03203 156 VLNGETADTLIVTARTKGAR--R--DRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENA 228 (378)
T ss_pred ecCCccCCEEEEEEecCCCC--C--CCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchH
Confidence 99999999999999985211 1 1257999999999999999887777776 468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-
Q psy2177 309 FKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGS- 387 (677)
Q Consensus 309 ~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~- 387 (677)
++.++..++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.||++||+|.+.++++++++|.++...|.+.
T Consensus 229 ~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~ 308 (378)
T TIGR03203 229 LPLIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDA 308 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998877532
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhh
Q psy2177 388 QDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPE 467 (677)
Q Consensus 388 ~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler 467 (677)
.+...+++++|+++++.+.+++++++|+|||+||+. + +|+++
T Consensus 309 ~~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~-------------e-------------------------~~~~~ 350 (378)
T TIGR03203 309 KERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTM-------------E-------------------------AKIGH 350 (378)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccceeecc-------------c-------------------------chHHH
Confidence 234578999999999999999999999999999999 8 99999
Q ss_pred hhhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 468 VLTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 468 ~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
+||| ++ +..|++|++++++..
T Consensus 351 ~~r~-----a~-----~~~~~~G~~~~~~~~ 371 (378)
T TIGR03203 351 YFKR-----LT-----MIEHTFGDTDFHLSR 371 (378)
T ss_pred HHHH-----HH-----HHHHhcCCHHHHHHH
Confidence 9999 99 999999999999987
No 12
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=2.7e-60 Score=517.97 Aligned_cols=368 Identities=32% Similarity=0.486 Sum_probs=334.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhCCC--cccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccC
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVNDP--LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGND 150 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~~p--~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d 150 (677)
+++|+ +++.+.+++|+++.+.| .+.|+.+.+|+++|+.|++.||+++.+|++|||.|++..+++.++|++++.|
T Consensus 1 ~~~~~----~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~ 76 (378)
T cd01157 1 LTEQQ----KEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGC 76 (378)
T ss_pred CCHHH----HHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhh
Confidence 35666 57889999999998776 3456777899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeec
Q psy2177 151 LAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS 230 (677)
Q Consensus 151 ~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~is 230 (677)
+++++.+..| .++...+..+|+++||++|||++.+|+.++++++|||..|||+..+.|+|+++ |++|+|||+|+|+|
T Consensus 77 ~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~--~~g~~l~G~k~~vs 153 (378)
T cd01157 77 TGVQTAIEAN-SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIINGQKMWIT 153 (378)
T ss_pred hHHHHHHHhh-hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEc--CCEEEEeeEEEeec
Confidence 8877665544 44555677799999999999999999999999999999999999999999984 44699999999999
Q ss_pred CccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHH
Q psy2177 231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310 (677)
Q Consensus 231 na~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~ 310 (677)
|++.||+++|+|+++..+ .+.+..++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.+++|++
T Consensus 154 ~~~~ad~~lv~a~~~~~~--~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~ 231 (378)
T cd01157 154 NGGKANWYFLLARSDPDP--KCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFK 231 (378)
T ss_pred CCccCCEEEEEEEeCCcc--cCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHH
Confidence 999999999999985321 111235799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCch
Q psy2177 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDY 390 (677)
Q Consensus 311 ~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~ 390 (677)
.+...++..|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+++++++++++.++..+|.+.. .
T Consensus 232 ~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~-~ 310 (378)
T cd01157 232 IAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRR-N 310 (378)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887642 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhh
Q psy2177 391 HLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLT 470 (677)
Q Consensus 391 ~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~R 470 (677)
....+++|+++++.+.+++++++|++||.||+. + ++++|+||
T Consensus 311 ~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~-------------~-------------------------~~l~r~~R 352 (378)
T cd01157 311 TYYASIAKAFAADIANQLATDAVQIFGGNGFNS-------------E-------------------------YPVEKLMR 352 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCC-------------C-------------------------CHHHHHHH
Confidence 567889999999999999999999999999999 8 99999999
Q ss_pred hhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 471 EDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 471 D~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
| ++ ...+++|+++++++.
T Consensus 353 d-----~~-----~~~~~~G~~~~~~~~ 370 (378)
T cd01157 353 D-----AK-----IYQIYEGTSQIQRLI 370 (378)
T ss_pred H-----Hh-----hceecCCHHHHHHHH
Confidence 9 99 999999999999988
No 13
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=8.5e-60 Score=514.01 Aligned_cols=365 Identities=32% Similarity=0.513 Sum_probs=337.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhCCCc--ccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccC
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGND 150 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~~p~--~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d 150 (677)
++|++ +++++.+++|+++.+.|. ..|..+.+|+++|+.|++.||+++.+|++|||.|++..+++.++|++++.|
T Consensus 1 ~~~~~----~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~ 76 (375)
T cd01162 1 LNEEQ----RAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGC 76 (375)
T ss_pred CCHHH----HHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhc
Confidence 35666 578999999999988763 456778899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeec
Q psy2177 151 LAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS 230 (677)
Q Consensus 151 ~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~is 230 (677)
+++++.+..|.. ....+..+|+++||++|+|++.+|+.++++++|||.+|||...++|+|+++ |++|+|||+|+|||
T Consensus 77 ~~~~~~~~~~~~-~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~G~k~~vs 153 (375)
T cd01162 77 VSTAAYISIHNM-CAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVRE--GDHYVLNGSKAFIS 153 (375)
T ss_pred hhHHHHHHHhhh-HHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEe--CCEEEEEEEEEEec
Confidence 998877777753 345677899999999999999999999999999999999999999999984 55699999999999
Q ss_pred CccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHH
Q psy2177 231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310 (677)
Q Consensus 231 na~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~ 310 (677)
|++.||+++|+|+++.. + ..++++|+||++.|||++.+.|+++|++++++++|.||||+||.+++||.+++|++
T Consensus 154 ~~~~ad~~~v~a~~~~~----~--~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~ 227 (375)
T cd01162 154 GAGDSDVYVVMARTGGE----G--PKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFG 227 (375)
T ss_pred CCCCCCEEEEEEEecCC----C--CCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHH
Confidence 99999999999997521 2 14689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCch
Q psy2177 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDY 390 (677)
Q Consensus 311 ~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~ 390 (677)
.....++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+++++++++++.++..+|.+..+.
T Consensus 228 ~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~ 307 (375)
T cd01162 228 IAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDA 307 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999998875455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhh
Q psy2177 391 HLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLT 470 (677)
Q Consensus 391 ~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~R 470 (677)
....+++|+++++.+.++++.++|++||.||+. + +|++|+||
T Consensus 308 ~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~-------------~-------------------------~~l~r~~R 349 (375)
T cd01162 308 VKLCAMAKRFATDECFDVANQALQLHGGYGYLK-------------D-------------------------YPVEQYVR 349 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------------C-------------------------ChHHHHHH
Confidence 667889999999999999999999999999999 8 99999999
Q ss_pred hhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 471 EDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 471 D~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
| ++ ..++++|++++++..
T Consensus 350 d-----~~-----~~~~~~G~~~~~~~~ 367 (375)
T cd01162 350 D-----LR-----VHQILEGTNEIMRLI 367 (375)
T ss_pred H-----hh-----cceeecCHHHHHHHH
Confidence 9 99 999999999999988
No 14
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=7.9e-60 Score=513.73 Aligned_cols=364 Identities=24% Similarity=0.337 Sum_probs=330.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhCCCc--ccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccC
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGND 150 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~~p~--~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d 150 (677)
|++|+ +++++.+++|+++.+.|. +.|+.+.+|+++|+.|.+.||+++.+|++|||.|++..+++.++|++++.|
T Consensus 1 ~t~~~----~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~ 76 (372)
T TIGR03207 1 LNEDL----QALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARAD 76 (372)
T ss_pred CCHHH----HHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhC
Confidence 45666 578899999999988773 356678899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeec
Q psy2177 151 LAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS 230 (677)
Q Consensus 151 ~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~is 230 (677)
+++++....+ .++...+..+|+++||++|||++.+|+.+.++++|||.+|||+.++.|+|+++ |++|+|||+|+|||
T Consensus 77 ~s~~~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~lnG~k~~vs 153 (372)
T TIGR03207 77 LSMSYVNLLA-SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERD--GDDYVLNGEKTSIS 153 (372)
T ss_pred ccHHHHHHhh-hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEe--CCEEEEEEEEEEEc
Confidence 9988654433 33445677899999999999999999999999999999999999999999984 44699999999999
Q ss_pred CccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHH
Q psy2177 231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310 (677)
Q Consensus 231 na~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~ 310 (677)
|++.||+++|+|+++.. ..+ ..++++|+||++.|||++. .|+++|++++++++|.|+||+||.+++||.+++|+.
T Consensus 154 ~~~~ad~~lv~a~~~~~--~~~--~~~~~~~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~ 228 (372)
T TIGR03207 154 AADQADAAVVFARTGSE--AEG--ARGISAFLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFV 228 (372)
T ss_pred CCCcCCEEEEEEEcCCC--CCC--CCceEEEEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHH
Confidence 99999999999998521 112 2478999999999999975 699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCch
Q psy2177 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDY 390 (677)
Q Consensus 311 ~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~ 390 (677)
.++..++..|+.+++.++|+++++++.+++|+++|+|||+||.++|.||++|++|.+.+++++++++.++..+|.+.. .
T Consensus 229 ~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~-~ 307 (372)
T TIGR03207 229 QVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLP-H 307 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887643 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhh
Q psy2177 391 HLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLT 470 (677)
Q Consensus 391 ~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~R 470 (677)
..+++++|+++++.+.++++.++|++||.||.. .|++|+||
T Consensus 308 ~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~---------------------------------------~~l~r~~r 348 (372)
T TIGR03207 308 TSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDR---------------------------------------GDMEQRLR 348 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC---------------------------------------chHHHHHh
Confidence 567899999999999999999999999999977 57999999
Q ss_pred hhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 471 EDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 471 D~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
| ++ ..+|+|||++|+++.
T Consensus 349 d-----~~-----~~~i~~Gt~~~~~~~ 366 (372)
T TIGR03207 349 D-----VL-----GFQIGDGTAQIMKTI 366 (372)
T ss_pred H-----hh-----heeecCCHHHHHHHH
Confidence 9 99 999999999999988
No 15
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-59 Score=518.69 Aligned_cols=362 Identities=31% Similarity=0.497 Sum_probs=335.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhCCCc--ccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccC
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGND 150 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~~p~--~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d 150 (677)
+++++ +++++.+++|+++.+.|. +.|+...+|+++|+.|++.||+++.+|++|||.|+++.+.+.+.|++++.|
T Consensus 37 ~~~~~----~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~ 112 (410)
T PTZ00461 37 PTPEH----AALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYD 112 (410)
T ss_pred CCHHH----HHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhC
Confidence 56677 578899999999988763 456677899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeec
Q psy2177 151 LAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS 230 (677)
Q Consensus 151 ~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~is 230 (677)
+++++.+..|..++...+..+|+++||++|||++.+|++++++++|||.+|||+..+.|+|++++|| +|+|||+|+|||
T Consensus 113 ~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g-g~~L~G~K~~vs 191 (410)
T PTZ00461 113 PGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNG-NYVLNGSKIWIT 191 (410)
T ss_pred chHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCC-eEEEEeEEEeEC
Confidence 8887777777655566788899999999999999999999999999999999999999999986544 599999999999
Q ss_pred CccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHH
Q psy2177 231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310 (677)
Q Consensus 231 na~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~ 310 (677)
|+..||+++|+|+++ +++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.++.|+.
T Consensus 192 ~a~~Ad~~lv~a~~~----------~~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~ 261 (410)
T PTZ00461 192 NGTVADVFLIYAKVD----------GKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMV 261 (410)
T ss_pred CCccCCEEEEEEEeC----------CceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHH
Confidence 999999999999963 2478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCch
Q psy2177 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDY 390 (677)
Q Consensus 311 ~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~ 390 (677)
.+...++..|+..++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+.+++++++++.++..+|.+. +.
T Consensus 262 ~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~-~~ 340 (410)
T PTZ00461 262 GMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGN-KN 340 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999998887754 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhh
Q psy2177 391 HLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLT 470 (677)
Q Consensus 391 ~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~R 470 (677)
...++++|+++++.+.++++.++|++||+||.. + +|++|+||
T Consensus 341 ~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~G~~~-------------~-------------------------~~l~r~~R 382 (410)
T PTZ00461 341 RLGSDAAKLFATPIAKKVADSAIQVMGGMGYSR-------------D-------------------------MPVERLWR 382 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC-------------C-------------------------CHHHHHHH
Confidence 567889999999999999999999999999999 8 99999999
Q ss_pred hhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 471 EDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 471 D~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
| ++ ...|++|++++++..
T Consensus 383 d-----a~-----~~~i~~Gt~e~~~~~ 400 (410)
T PTZ00461 383 D-----AK-----LLEIGGGTIEAHHKN 400 (410)
T ss_pred H-----Hh-----hheeccCHHHHHHHH
Confidence 9 99 999999999999987
No 16
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-59 Score=512.21 Aligned_cols=363 Identities=26% Similarity=0.333 Sum_probs=329.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhCCC---cccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhcc
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVNDP---LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGN 149 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~~p---~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~ 149 (677)
+++|+ +++++.++.|+++.+.+ .+.|+.+.+|+++|+.|++.||+++.+|++|||.|++..+++.++|++++.
T Consensus 5 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~ 80 (381)
T PRK12341 5 LTEEQ----ELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC 80 (381)
T ss_pred CCHHH----HHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence 57777 57889999999987654 345777889999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHhhhhHHHHHHhcCChhhhhcccccc-ccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEe
Q psy2177 150 DLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRV-STGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIW 228 (677)
Q Consensus 150 d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l-~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~ 228 (677)
|.+ ++.+ ++.++...+..+|+++||++|||++ .+|+.++++++|||+.|||+..++|+|+++ +++|+|||+|+|
T Consensus 81 ~~~-~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~--~gg~~lnG~K~~ 155 (381)
T PRK12341 81 GAP-AFLI--TNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRK--NGKVYLNGQKTF 155 (381)
T ss_pred Chh-HHHH--hhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEe--CCEEEEEeEEEE
Confidence 887 3333 3444556788899999999999998 599989999999999999999999999984 446999999999
Q ss_pred ecCccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcch
Q psy2177 229 ISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNG 308 (677)
Q Consensus 229 isna~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G 308 (677)
|||++.||+++|+|+++.. +....++++|+||++.|||++. +|+++|++++++++|+|+||+||.+++||.+++|
T Consensus 156 is~~~~Ad~~~v~a~~~~~----~~~~~~~~~~lV~~~~~gv~~~-~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g 230 (381)
T PRK12341 156 ITGAKEYPYMLVLARDPQP----KDPKKAFTLWWVDSSKPGIKIN-PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMG 230 (381)
T ss_pred EcCCccCCEEEEEEEcCCC----CCCCCceEEEEEeCCCCceeec-ccccccCCCCCceEEEECcEEecHHHcCCCCChH
Confidence 9999999999999997532 1112478999999999999994 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy2177 309 FKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQ 388 (677)
Q Consensus 309 ~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~ 388 (677)
+..++..++..|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.+++++++++++.++...|.+..
T Consensus 231 ~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~ 310 (381)
T PRK12341 231 FLNVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQS 310 (381)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999988887643
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhh
Q psy2177 389 DYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEV 468 (677)
Q Consensus 389 ~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~ 468 (677)
....++++|+++++.+.++++.++|++||.||.+ + +|++|+
T Consensus 311 -~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~-------------~-------------------------~~l~r~ 351 (381)
T PRK12341 311 -LRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTD-------------E-------------------------ARVSRF 351 (381)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC-------------C-------------------------CHHHHH
Confidence 4578899999999999999999999999999999 8 999999
Q ss_pred hhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 469 LTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 469 ~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
||| ++ ...+++|+++|++..
T Consensus 352 ~RD-----~~-----~~~~~~g~~~~~~~~ 371 (381)
T PRK12341 352 WRD-----VR-----CERIGGGTDEIMIYI 371 (381)
T ss_pred HHH-----hh-----cceecCCHHHHHHHH
Confidence 999 99 999999999999877
No 17
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=2.4e-59 Score=509.91 Aligned_cols=366 Identities=33% Similarity=0.498 Sum_probs=338.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhCCCc--ccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccC
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGND 150 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~~p~--~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d 150 (677)
+++|+ +++++.+++|+++.+.|. +.|+.+.+|++.|+.|.+.||+++.+|++|||.|+++.+++.++|++++.|
T Consensus 2 ~~~~~----~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~ 77 (376)
T cd01156 2 LDDEI----EMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRAS 77 (376)
T ss_pred CCHHH----HHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccc
Confidence 45665 688999999999988773 346677899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeec
Q psy2177 151 LAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS 230 (677)
Q Consensus 151 ~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~is 230 (677)
+++++.+..|..++...|..+|+++||++|||++++|++++++++|||.+|||+.+++|+|+++ +++|+|||+|+|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~--~~g~~l~G~k~~vs 155 (376)
T cd01156 78 GSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKK--GDRYVLNGSKMWIT 155 (376)
T ss_pred hhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEe--CCEEEEEEEEEEec
Confidence 9999887778766666788899999999999999999999999999999999999999999985 44699999999999
Q ss_pred CccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHH
Q psy2177 231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310 (677)
Q Consensus 231 na~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~ 310 (677)
|++.||+++|+|+++.. .+ ..++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.++.|+.
T Consensus 156 ~~~~a~~~lv~a~~~~~---~~--~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~ 230 (376)
T cd01156 156 NGPDADTLVVYAKTDPS---AG--AHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVY 230 (376)
T ss_pred CCCcCCEEEEEEEeCCC---CC--CCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHH
Confidence 99999999999997531 11 25789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCch
Q psy2177 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDY 390 (677)
Q Consensus 311 ~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~ 390 (677)
.++..++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+++++++++++.++..+|.+.. .
T Consensus 231 ~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~-~ 309 (376)
T cd01156 231 VLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNM-D 309 (376)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987653 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhh
Q psy2177 391 HLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLT 470 (677)
Q Consensus 391 ~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~R 470 (677)
..+.+.+|+++++.+.++++.++|++||.||+. + ++++|+||
T Consensus 310 ~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~-------------~-------------------------~~l~r~~R 351 (376)
T cd01156 310 PKDAAGVILYAAEKATQVALDAIQILGGNGYIN-------------D-------------------------YPTGRLLR 351 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc-------------C-------------------------CHHHHHHH
Confidence 567888999999999999999999999999999 8 99999999
Q ss_pred hhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 471 EDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 471 D~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
| ++ ...+++|++++++..
T Consensus 352 d-----a~-----~~~~~~gt~~~~~~~ 369 (376)
T cd01156 352 D-----AK-----LYEIGAGTSEIRRMV 369 (376)
T ss_pred H-----hh-----cceecCCHHHHHHHH
Confidence 9 99 999999999999987
No 18
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.8e-57 Score=526.63 Aligned_cols=529 Identities=19% Similarity=0.260 Sum_probs=395.9
Q ss_pred CCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhC---CC--cccCcCCCCC-HHHHHHHHHcCCCCCCCcccCCCC
Q psy2177 59 GQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVN---DP--LKNDSLETVE-PNTLEGLWDLGAFSLQVPQDLGGL 132 (677)
Q Consensus 59 g~~~~~~~~~~p~~l~~e~~~~~~~l~~~~~~f~~~~~---~p--~~~d~~~~~p-~e~~~~l~~~Gl~~l~vP~eyGG~ 132 (677)
..||++++-.+ +++++ .++.+.+++|+++.. .| ...++.+.++ .++++.+++.|++++.+|++
T Consensus 50 ~~f~~~~l~~~---l~~~~----~~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~---- 118 (686)
T PLN02636 50 LSVNTEKLSLY---MRGKH----RDIQEKIYEFFNSRPDLQTPVEISKDEHRELCMRQLTGLVREAGIRPMKYLVE---- 118 (686)
T ss_pred CCCCHHHHHhh---cCCcH----HHHHHHHHHHHHhCccccCCchhhHHHhhhhHHHHHHHHHHhcCccccccccC----
Confidence 34555444321 44444 357788999988752 33 2344556777 78899999999999999976
Q ss_pred CCCHHHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEE
Q psy2177 133 GLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAV 212 (677)
Q Consensus 133 Gls~~~~~~v~e~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~ 212 (677)
+...+..+.|++++.|++++..+++|.++....|..+||++||++|||++.+|++++|||+|||++|||+..++|+|+
T Consensus 119 --~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~ 196 (686)
T PLN02636 119 --DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTAT 196 (686)
T ss_pred --CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEE
Confidence 778899999999999998888888998887888999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEE-----EEEEeecCccc-cCEEEEEEEcCCCCCC-CCcccCeEEEEEEecC-------CCCeeeCCCCCc
Q psy2177 213 LSPDGKHYILN-----GSKIWISNGGF-AEIMTVFAQTPVKDEK-TGKVVDKVTAFIVERS-------FGGVTSGPPEKK 278 (677)
Q Consensus 213 ~~~dG~~y~Ln-----G~K~~isna~~-Ad~~lV~Art~~~d~~-~g~~~~gis~FlVp~~-------~~GV~v~~~~~~ 278 (677)
++++|++|+|| |+|+||+|++. ||+++|+||+...++. .+.+..|+++|+||.+ .|||++++..+|
T Consensus 197 ~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K 276 (686)
T PLN02636 197 FDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHK 276 (686)
T ss_pred EcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCc
Confidence 97768889999 99999999986 9999999998632211 1223468999999986 699999999999
Q ss_pred CCCCCCCceEEEEcceecccccccCC----------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2177 279 MGIKASNTAEVYYEDVKVPVENVLGG----------------VGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHA 342 (677)
Q Consensus 279 ~G~rg~~t~~v~fddV~VP~~~lLG~----------------~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a 342 (677)
||+++.+++.|.||||+||.+|+||. +++||..++..++.+|+.+++.++|++++++++|++|+
T Consensus 277 ~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa 356 (686)
T PLN02636 277 VGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYS 356 (686)
T ss_pred cCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999953 36799999999999999999999999999999999999
Q ss_pred hhhcccCCC------CCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhCCC----CchHHHHHHHHHHHHHHHHHH
Q psy2177 343 TQRVQFGRR------IDSFGTIQEKLARMALLHYVTE----SLAYMISGNMDNGS----QDYHLEAAISKVFASEAAWYV 408 (677)
Q Consensus 343 ~~R~qfg~p------i~~~~~vq~~La~m~~~~~aa~----al~~~~a~~~d~~~----~~~~~~~a~aK~~ase~a~~v 408 (677)
.+|+|||+| |.+||.+|++|++|.+.+|+++ .+++..++..+.+. .+.+.+++++|.++++.+.++
T Consensus 357 ~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~ 436 (686)
T PLN02636 357 LLRQQFGPPKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKA 436 (686)
T ss_pred HcCEeCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999955 56666665555433 246889999999999999999
Q ss_pred HHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCccccc
Q psy2177 409 TDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFF 488 (677)
Q Consensus 409 ~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~ 488 (677)
+++|+|+|||+||+. + ++++++||| ++ +..||
T Consensus 437 ~~~~rq~~GG~Gy~~-------------~-------------------------~~l~~l~rd-----~~-----~~~t~ 468 (686)
T PLN02636 437 LSTCREACGGHGYAA-------------V-------------------------NRFGSLRND-----HD-----IFQTF 468 (686)
T ss_pred HHHHHHHhcCCcccC-------------c-------------------------CcHHHHHHH-----hh-----hheee
Confidence 999999999999999 8 999999999 99 99999
Q ss_pred cCchHHhhhccCCCcchhHHHHHHHHhhhHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcCCCC-----CCCccccCcch
Q psy2177 489 DEVNDPLKNDSLETVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTP-----PSLHHVVHANL 563 (677)
Q Consensus 489 eGtn~i~~~~~~~~~~~ia~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~l 563 (677)
||+|+|+++. |+..-+. .+.+.++. ..+...+..+............. ..-.+... .
T Consensus 469 EG~n~Vl~~~-------iAr~ll~-------~~~~~~~~--~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~l~~--~ 530 (686)
T PLN02636 469 EGDNTVLLQQ-------VAADLLK-------QYKEKFQG--GTLSVTWNYLRESMNTYLSQPNPVTTRWEGEEHLRD--P 530 (686)
T ss_pred cChHHHHHHH-------HHHHHHH-------HHHHHhcc--CCCchHHHHHHhhhhhhhcccccccccccchhhhcC--H
Confidence 9999999999 8765432 23333221 11111111111110000000000 00000111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q psy2177 564 AESGVLCSKSVVLFGEAVESLLLKYGKG------VVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLA 637 (677)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~------~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la 637 (677)
....+.++....++...+..-+.++.+. .-.-+..+.+++.+-++.|....-+....+ .+..+....|.
T Consensus 531 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~awn~~~~~l~~~a~ah~~~~~~~~f~~~v~~-----~~~~~~~~vL~ 605 (686)
T PLN02636 531 KFQLDAFRYRTSRLLQTAALRLRKHSKTLGSFGAWNRCLNHLLTLAESHIESVILAKFIEAVER-----CPDRSTRAALK 605 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCHHHHHHHH
Confidence 2233334443333322222222332221 112244566788888887777666664442 13444445677
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q psy2177 638 ELWCYEAAERVSQNLGALNSGKKLDSYTKLGDIAK 672 (677)
Q Consensus 638 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 672 (677)
.+++.-+...|.+.+..+....+++.++. +.|-+
T Consensus 606 ~l~~Ly~l~~i~~~~g~fl~~~~l~~~~~-~~i~~ 639 (686)
T PLN02636 606 LVCDLYALDRIWKDIGTYRNVDYVAPNKA-KAIHK 639 (686)
T ss_pred HHHHHHhHHHHHHhHHHHHHcCCCCHHHH-HHHHH
Confidence 77777889999999998888767765433 44433
No 19
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=3.1e-59 Score=508.31 Aligned_cols=361 Identities=29% Similarity=0.438 Sum_probs=331.6
Q ss_pred HHHHHHHHHHHHhhCCC--cccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHH
Q psy2177 82 KMLVDPVTKFFDEVNDP--LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGA 159 (677)
Q Consensus 82 ~~l~~~~~~f~~~~~~p--~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~ 159 (677)
+++.+.+++|+++.+.| .+.|+++.+|+++|+.|++.||+++.+|++|||.|++..++..++|++++.+. .++.+.+
T Consensus 4 ~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~-~~~~~~~ 82 (372)
T cd01160 4 DAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGG-SGPGLSL 82 (372)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcc-hHHHHHH
Confidence 57889999999998766 34567788999999999999999999999999999999999999999998554 4667777
Q ss_pred hhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeecCccccCEEE
Q psy2177 160 HQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMT 239 (677)
Q Consensus 160 h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isna~~Ad~~l 239 (677)
|..++...+..+|+++||++|||++.+|++++|+++|||.+|||+..++|+|+++ |++|+|||+|+||||++.||+++
T Consensus 83 ~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~G~k~~vs~~~~Ad~~~ 160 (372)
T cd01160 83 HTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKD--GDHYVLNGSKTFITNGMLADVVI 160 (372)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEe--CCEEEEeeEEEEecCCCccCEEE
Confidence 7655666788899999999999999999999999999999999999999999984 44699999999999999999999
Q ss_pred EEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHHHHHHHHHHH
Q psy2177 240 VFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNG 319 (677)
Q Consensus 240 V~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~ 319 (677)
|+|+++..+ ....++++|+||++.|||++.++|+++|++++++++|.|+||+||.+++||.+++|+......++.+
T Consensus 161 v~a~~~~~~----~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~ 236 (372)
T cd01160 161 VVARTGGEA----RGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQE 236 (372)
T ss_pred EEEEeCCCC----CCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHH
Confidence 999985321 1125789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q psy2177 320 RFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKV 399 (677)
Q Consensus 320 Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~~~~~a~aK~ 399 (677)
|+..++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+++++++++++.++..+|.+.. ....++++|+
T Consensus 237 ~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~-~~~~~~~aK~ 315 (372)
T cd01160 237 RLLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRL-DVAEASMAKY 315 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988887643 3578899999
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhh
Q psy2177 400 FASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKM 479 (677)
Q Consensus 400 ~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~ 479 (677)
++++.+.++++.++|++||.||+. + +|++|+||| ++
T Consensus 316 ~~~~~a~~v~~~a~~~~Gg~g~~~-------------~-------------------------~~l~r~~Rd-----~~- 351 (372)
T cd01160 316 WATELQNRVAYECVQLHGGWGYMR-------------E-------------------------YPIARAYRD-----AR- 351 (372)
T ss_pred HHHHHHHHHHHHHHHHhcCceecC-------------C-------------------------CHHHHHHHH-----hh-
Confidence 999999999999999999999999 8 999999999 99
Q ss_pred hcCCccccccCchHHhhhc
Q psy2177 480 LVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 480 ~~~pi~~i~eGtn~i~~~~ 498 (677)
...|++|+++|++.+
T Consensus 352 ----~~~~~~gt~~~~~~~ 366 (372)
T cd01160 352 ----VQPIYGGTTEIMKEL 366 (372)
T ss_pred ----cccccCCHHHHHHHH
Confidence 999999999999988
No 20
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.9e-59 Score=510.03 Aligned_cols=363 Identities=27% Similarity=0.395 Sum_probs=330.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhC-CC--cccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhcc
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVN-DP--LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGN 149 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~-~p--~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~ 149 (677)
+|+|| +++.+.+++|+++.+ .+ .+.|+...+|+++|+.|++.||+++.+|++|||.|++..+++.+++++++.
T Consensus 5 ~~~~~----~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~ 80 (380)
T PRK03354 5 LNDEQ----ELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL 80 (380)
T ss_pred CCHHH----HHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 67887 588899999999864 33 346777889999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEee
Q psy2177 150 DLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWI 229 (677)
Q Consensus 150 d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~i 229 (677)
|+++++.+.+|. +...+..+|+++||++|||++++|+.+.++++|||++|||+..+.|+|+++ +++|+|||+|+||
T Consensus 81 ~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~--~~g~~lnG~K~fi 156 (380)
T PRK03354 81 GAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRR--NGKVYLNGSKCFI 156 (380)
T ss_pred CcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEe--CCEEEEeeEEEEE
Confidence 998876655543 245678899999999999999999999999999999999999999999984 4469999999999
Q ss_pred cCccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchH
Q psy2177 230 SNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGF 309 (677)
Q Consensus 230 sna~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~ 309 (677)
||+..||+++|+|+++.. ++ ..++++|+||++.|||++. +|+++|++++++++|.|+||+||.++++|.+++|+
T Consensus 157 s~~~~ad~~~v~a~~~~~---~~--~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~ 230 (380)
T PRK03354 157 TSSAYTPYIVVMARDGAS---PD--KPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGF 230 (380)
T ss_pred cCCCcCCEEEEEEEcCCC---CC--CCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHH
Confidence 999999999999997421 12 1468999999999999986 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc
Q psy2177 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQD 389 (677)
Q Consensus 310 ~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~ 389 (677)
......++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+.+++++++++.++...|.+..
T Consensus 231 ~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~- 309 (380)
T PRK03354 231 NRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTI- 309 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-
Confidence 8888888999999999999999999999999999999999999999999999999999999999999999998887643
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhh
Q psy2177 390 YHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVL 469 (677)
Q Consensus 390 ~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~ 469 (677)
...+.+++|+++++.+.++++.++|++||.||.. + +|++|+|
T Consensus 310 ~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~-------------~-------------------------~~l~r~~ 351 (380)
T PRK03354 310 TSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAG-------------N-------------------------HRISRFW 351 (380)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCceecC-------------C-------------------------ChHHHHH
Confidence 3567899999999999999999999999999999 8 9999999
Q ss_pred hhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 470 TEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 470 RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
|| ++ ...+++|+++++++.
T Consensus 352 Rd-----~~-----~~~~~~G~~~~~~~~ 370 (380)
T PRK03354 352 RD-----LR-----VDRVSGGSDEMQILT 370 (380)
T ss_pred HH-----hh-----hhhccCCHHHHHHHH
Confidence 99 99 999999999999998
No 21
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=5.5e-59 Score=512.99 Aligned_cols=366 Identities=31% Similarity=0.468 Sum_probs=337.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhCCCc--ccCcCCCCCHH--HHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhc
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPN--TLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGG 148 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~~p~--~~d~~~~~p~e--~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~ 148 (677)
+++++ .++++.+++|+++++.|. +.|+.+.+|.+ +|+.|++.||+++.+|++|||.|+++.+++.++|++++
T Consensus 26 ~~~~~----~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~ 101 (404)
T PLN02519 26 FDDTQ----LQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISR 101 (404)
T ss_pred CCHHH----HHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhh
Confidence 46666 578899999999987763 45667788876 69999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEe
Q psy2177 149 NDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIW 228 (677)
Q Consensus 149 ~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~ 228 (677)
.|+++++.+.+|...+...|..+|+++||++|||++.+|+.++|+++|||.+|||+..++|+|+++ |++|+|||+|+|
T Consensus 102 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~--~~g~~lnG~K~~ 179 (404)
T PLN02519 102 ASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERV--DGGYVLNGNKMW 179 (404)
T ss_pred hcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEe--CCEEEEEeEEEe
Confidence 999999988888776667788899999999999999999999999999999999999999999984 446999999999
Q ss_pred ecCccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcch
Q psy2177 229 ISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNG 308 (677)
Q Consensus 229 isna~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G 308 (677)
+||++.||+++|+|+++. +++ ..++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.++.|
T Consensus 180 vs~a~~ad~~~v~a~~~~---~~~--~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G 254 (404)
T PLN02519 180 CTNGPVAQTLVVYAKTDV---AAG--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKG 254 (404)
T ss_pred ecCCCcCCEEEEEEEeCC---CCC--CCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCcc
Confidence 999999999999999752 122 257899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy2177 309 FKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQ 388 (677)
Q Consensus 309 ~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~ 388 (677)
+...+..++..|+.+++.++|+++++++.+++|+++|.+||+||.++|.+|++|++|.+.+++++++++.++..+|.+..
T Consensus 255 ~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~ 334 (404)
T PLN02519 255 VYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKV 334 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhh
Q psy2177 389 DYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEV 468 (677)
Q Consensus 389 ~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~ 468 (677)
...+.+.+|+++++.+.++++.++|++||.||++ + ++++|+
T Consensus 335 -~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~-------------~-------------------------~~l~r~ 375 (404)
T PLN02519 335 -DRKDCAGVILCAAERATQVALQAIQCLGGNGYIN-------------E-------------------------YPTGRL 375 (404)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecC-------------C-------------------------ChHHHH
Confidence 3567888999999999999999999999999999 7 999999
Q ss_pred hhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 469 LTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 469 ~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
||| ++ ...|++|+++|++..
T Consensus 376 ~RD-----~~-----~~~~~~G~~e~~~~~ 395 (404)
T PLN02519 376 LRD-----AK-----LYEIGAGTSEIRRML 395 (404)
T ss_pred HHh-----hh-----cceeeCCHHHHHHHH
Confidence 999 99 999999999999987
No 22
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=4e-58 Score=507.50 Aligned_cols=363 Identities=26% Similarity=0.355 Sum_probs=332.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhhCCCc--ccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhc
Q psy2177 71 EVLTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGG 148 (677)
Q Consensus 71 ~~l~~e~~~~~~~l~~~~~~f~~~~~~p~--~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~ 148 (677)
..+++|+ +++.+.+++|+++++.|. +.+....+|+++|+.|.+.||+++.+ ++|||.|++..+++.++|++++
T Consensus 27 ~~~t~~~----~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~ 101 (412)
T PLN02526 27 DLLTPEE----QALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEVAR 101 (412)
T ss_pred cCCCHHH----HHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcc-cccCCCCcCHHHHHHHHHHHHh
Confidence 3367777 578999999999987763 23456679999999999999999999 9999999999999999999999
Q ss_pred cCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEe
Q psy2177 149 NDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIW 228 (677)
Q Consensus 149 ~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~ 228 (677)
.|++++..+.+|..++...|..+|+++||++|||++++|++++++++|||+.|||+.++.|+|++++ ++|+|||+|.|
T Consensus 102 ~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~--gg~~lnG~K~~ 179 (412)
T PLN02526 102 VDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVE--GGWILNGQKRW 179 (412)
T ss_pred hCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEEC--CEEEEEEEEee
Confidence 9998877777777766667889999999999999999999999999999999999999999999854 45999999999
Q ss_pred ecCccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcch
Q psy2177 229 ISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNG 308 (677)
Q Consensus 229 isna~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G 308 (677)
|||+..||+++|+++++. + +++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++|+..+ |
T Consensus 180 vs~~~~Ad~~lv~a~~~~-----~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~ 250 (412)
T PLN02526 180 IGNSTFADVLVIFARNTT-----T---NQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-S 250 (412)
T ss_pred ecCCCccCEEEEEEEeCC-----C---CCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-c
Confidence 999999999999999742 1 358999999999999999999999999999999999999999999998764 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy2177 309 FKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQ 388 (677)
Q Consensus 309 ~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~ 388 (677)
+......++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|+++++|.+++++++++++.++..+|.+..
T Consensus 251 ~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~ 330 (412)
T PLN02526 251 FQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESGKM 330 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999998887643
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhh
Q psy2177 389 DYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEV 468 (677)
Q Consensus 389 ~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~ 468 (677)
....++++|+++++.+.++++.++|++||.||.. + +|++|+
T Consensus 331 -~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~-------------~-------------------------~~l~r~ 371 (412)
T PLN02526 331 -TPGHASLGKAWITKKARETVALGRELLGGNGILA-------------D-------------------------FLVAKA 371 (412)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-------------c-------------------------CHHHHH
Confidence 3567899999999999999999999999999999 8 999999
Q ss_pred hhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 469 LTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 469 ~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
||| ++ +..+++|+++++++.
T Consensus 372 ~RD-----~~-----~~~~~~G~~ev~~~~ 391 (412)
T PLN02526 372 FCD-----LE-----PIYTYEGTYDINALV 391 (412)
T ss_pred Hhc-----cc-----ceEecCCHHHHHHHH
Confidence 999 99 999999999999988
No 23
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=4.7e-57 Score=494.98 Aligned_cols=362 Identities=38% Similarity=0.581 Sum_probs=327.5
Q ss_pred HHHHHHHHHHHHhhCCCc--ccCc---CCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHH
Q psy2177 82 KMLVDPVTKFFDEVNDPL--KNDS---LETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIV 156 (677)
Q Consensus 82 ~~l~~~~~~f~~~~~~p~--~~d~---~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~ 156 (677)
.++.+.+++|+++...|. ..+. ...+|.++++.+.+.|++++.+|++|||.|++......+.|++++.+++.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~~~~~~ 89 (393)
T COG1960 10 EALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALA 89 (393)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCcchhhh
Confidence 578888999999887652 3332 57889999999999999999999999999999999999999999999877665
Q ss_pred HHHhhh-hH--HHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCc-eEEEEcCCCCEEEEEEEEEeecCc
Q psy2177 157 LGAHQS-IG--FKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIK-TRAVLSPDGKHYILNGSKIWISNG 232 (677)
Q Consensus 157 l~~h~~-~g--~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~-T~A~~~~dG~~y~LnG~K~~isna 232 (677)
+..|.. ++ ...+..+|+++||++|||++++|++++|+++|||.+|||+.++. |+++. .+|+ |+|||+|+||||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~-~~g~-~~lnG~K~~is~~ 167 (393)
T COG1960 90 LGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVR-DDGD-YVLNGQKIWISNA 167 (393)
T ss_pred HHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEe-cCCC-EEEEeEEEEEcCC
Confidence 555433 22 23566799999999999999999999999999999999999988 55554 3454 9999999999999
Q ss_pred cccCEEEEEEEcCCCCCCCCcccCeEEEEEEecC-CCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHHH
Q psy2177 233 GFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERS-FGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKV 311 (677)
Q Consensus 233 ~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~-~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~~ 311 (677)
+.||+++|+|+++..+ .+.+|+++|+||++ .|||++.+.+++.|++++++++|.|+||+||.+++||+++.||..
T Consensus 168 ~~ad~~~v~Ar~~~~~----~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~ 243 (393)
T COG1960 168 PVADWLLVLARTDPAP----GKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKI 243 (393)
T ss_pred CCCCEEEEEEEcCCcc----cccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHH
Confidence 9999999999986421 34579999999999 599999998865599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchH
Q psy2177 312 AMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYH 391 (677)
Q Consensus 312 ~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~~ 391 (677)
++..++.+|+.+++.++|+++.+++.+++|+++|++||+||+++|.+|++|++|.++++++++++++++...|.+. +..
T Consensus 244 ~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~-~~~ 322 (393)
T COG1960 244 AMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGD-DAG 322 (393)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888875 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhh
Q psy2177 392 LEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTE 471 (677)
Q Consensus 392 ~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD 471 (677)
..++++|+++++.+.++++.++|++||+||+. + +|++|+|||
T Consensus 323 ~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~-------------e-------------------------~~i~r~~rd 364 (393)
T COG1960 323 AEAAMAKLFATEAALEVADEAVQVHGGYGYTE-------------E-------------------------YPVERYYRD 364 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-------------C-------------------------chHHHHHHH
Confidence 88999999999999999999999999999999 8 999999999
Q ss_pred hhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 472 DQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 472 ~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
++ +..|++|+++|+++.
T Consensus 365 -----a~-----~~~i~~Gt~~i~~~~ 381 (393)
T COG1960 365 -----AR-----ILRIYEGTSEIQRLI 381 (393)
T ss_pred -----hH-----hheeccCHHHHHHHH
Confidence 99 999999999999999
No 24
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.4e-57 Score=498.22 Aligned_cols=364 Identities=24% Similarity=0.319 Sum_probs=318.8
Q ss_pred HHHHHHHHHHHHhhCCCcc--cCcC-------CCCC----HHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhc
Q psy2177 82 KMLVDPVTKFFDEVNDPLK--NDSL-------ETVE----PNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGG 148 (677)
Q Consensus 82 ~~l~~~~~~f~~~~~~p~~--~d~~-------~~~p----~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~ 148 (677)
+++++.+++|+++++.|.. .|+. ..+| +++|+.+.++||+++.+|++|||.|++..+++.++|++++
T Consensus 4 ~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~ 83 (394)
T cd01155 4 QELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETGR 83 (394)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHhh
Confidence 5789999999999887732 2221 1244 5788888899999999999999999999999999999998
Q ss_pred cCchhHHH-HHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCC-CCCCCCCCceEEEEcCCCCEEEEEEEE
Q psy2177 149 NDLAVGIV-LGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPA-SGSDAGSIKTRAVLSPDGKHYILNGSK 226 (677)
Q Consensus 149 ~d~s~~~~-l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~-~GSD~~~~~T~A~~~~dG~~y~LnG~K 226 (677)
.+.+..+. ...+...+...+..+|+++||++|||++.+|+.++++++|||. +|||+..+.|+|+++ |++|+|||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~--~~g~~LnG~k 161 (394)
T cd01155 84 SFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERD--GDDYVINGRK 161 (394)
T ss_pred hcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEE--CCEEEEEEEE
Confidence 76332222 2222222335678899999999999999999999999999997 789999999999984 4569999999
Q ss_pred EeecCccc--cCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCC--CCceEEEEcceeccccccc
Q psy2177 227 IWISNGGF--AEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKA--SNTAEVYYEDVKVPVENVL 302 (677)
Q Consensus 227 ~~isna~~--Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg--~~t~~v~fddV~VP~~~lL 302 (677)
+|+||+.+ +|+++|+|+++.. ++.+..++++|+||++.|||++.+.|+++|+++ +++++|.|+||+||.+++|
T Consensus 162 ~~vs~~~~~~a~~~~v~a~~~~~---~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~l 238 (394)
T cd01155 162 WWSSGAGDPRCKIAIVMGRTDPD---GAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLI 238 (394)
T ss_pred EEEcCCCCCCCCEEEEEEEeCCC---cCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcC
Confidence 99999954 7899999998532 122235789999999999999999999999997 5688999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2177 303 GGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGN 382 (677)
Q Consensus 303 G~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~ 382 (677)
|.+++|++.....++.+|+..++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+.+++++++++.++..
T Consensus 239 g~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~ 318 (394)
T cd01155 239 LGEGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHM 318 (394)
T ss_pred CCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCC
Q psy2177 383 MDNGS-QDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQ 461 (677)
Q Consensus 383 ~d~~~-~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (677)
+|.+. .+.....+++|+++++.+.+++++++|++||+||+. +
T Consensus 319 ~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~-------------~------------------------ 361 (394)
T cd01155 319 IDTVGNKAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQ-------------D------------------------ 361 (394)
T ss_pred HhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecC-------------C------------------------
Confidence 88743 234678999999999999999999999999999999 8
Q ss_pred CCChhhhhhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 462 VFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 462 ~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
+|++|+||| ++ +..|++|++++++..
T Consensus 362 -~~l~r~~Rd-----a~-----~~~i~~Gt~~~~~~~ 387 (394)
T cd01155 362 -TPLANMYAW-----AR-----TLRIADGPDEVHLRS 387 (394)
T ss_pred -CHHHHHHHH-----Hh-----hceeecCHHHHHHHH
Confidence 999999999 99 999999999999988
No 25
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=2.2e-56 Score=485.59 Aligned_cols=361 Identities=39% Similarity=0.632 Sum_probs=335.1
Q ss_pred HHHHHHHHHHHHhhCCC--cccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHH
Q psy2177 82 KMLVDPVTKFFDEVNDP--LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGA 159 (677)
Q Consensus 82 ~~l~~~~~~f~~~~~~p--~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~ 159 (677)
.++++.+++|+++.+.+ .+.|+.+.+|+++|+.|++.||+++.+|++|||.|++..+++.++|++++.|+++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~~~ 83 (373)
T cd01158 4 QMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSV 83 (373)
T ss_pred HHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHHHH
Confidence 57889999999887654 3456777899999999999999999999999999999999999999999999999999988
Q ss_pred hhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeecCccccCEEE
Q psy2177 160 HQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMT 239 (677)
Q Consensus 160 h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isna~~Ad~~l 239 (677)
|.+++...+..+|+++|+++|++++.+|+.++++++|||.+|||+..+.|+|+++ +++|+|||+|.|+||++.||+++
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~--~~g~~l~G~k~~vsg~~~ad~~l 161 (373)
T cd01158 84 HNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKD--GDDYVLNGSKMWITNGGEADFYI 161 (373)
T ss_pred HHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEe--CCEEEEeeEEEEEcCCCcCCEEE
Confidence 8766667788899999999999999999999999999999999999999999984 45699999999999999999999
Q ss_pred EEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHHHHHHHHHHH
Q psy2177 240 VFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNG 319 (677)
Q Consensus 240 V~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~ 319 (677)
|+|+++.. .+ ..++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.++.|+...+..++.+
T Consensus 162 v~a~~~~~---~~--~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~ 236 (373)
T cd01158 162 VFAVTDPS---KG--YRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGG 236 (373)
T ss_pred EEEEcCCC---CC--CCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHH
Confidence 99997421 12 24689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q psy2177 320 RFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKV 399 (677)
Q Consensus 320 Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~~~~~a~aK~ 399 (677)
|+..++.++|+++++++.+++|+++|.+||+|+.++|.+|+++++|.+.+++++++++.++..+|.+. +...+++++|+
T Consensus 237 r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~-~~~~~~~~~k~ 315 (373)
T cd01158 237 RIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGE-PFIKEAAMAKL 315 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888764 44678899999
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhh
Q psy2177 400 FASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKM 479 (677)
Q Consensus 400 ~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~ 479 (677)
++++.+.++++.+++++||.||.. + +|++|+||| ++
T Consensus 316 ~~~~~a~~~~~~~~~~~G~~g~~~-------------~-------------------------~~l~r~~rd-----~~- 351 (373)
T cd01158 316 FASEVAMRVTTDAVQIFGGYGYTK-------------D-------------------------YPVERYYRD-----AK- 351 (373)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCC-------------C-------------------------ChHHHHHHH-----hh-
Confidence 999999999999999999999999 7 999999999 99
Q ss_pred hcCCccccccCchHHhhhc
Q psy2177 480 LVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 480 ~~~pi~~i~eGtn~i~~~~ 498 (677)
...+++|+++++...
T Consensus 352 ----~~~~~~g~~~~~~~~ 366 (373)
T cd01158 352 ----ITEIYEGTSEIQRLV 366 (373)
T ss_pred ----hccccCCHHHHHHHH
Confidence 999999999999887
No 26
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=3.7e-56 Score=489.25 Aligned_cols=366 Identities=22% Similarity=0.288 Sum_probs=313.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhCCCcccC---cCCCCCH----HHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHH
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLKND---SLETVEP----NTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEI 145 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~~p~~~d---~~~~~p~----e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~ 145 (677)
+++|| .++.+.+++|+++.+.|...+ ....+|+ ++|+.|.++||+++.+|++|||.|++..+++.++|+
T Consensus 4 lteeq----~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~ee 79 (395)
T TIGR03204 4 FSKEE----QAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEE 79 (395)
T ss_pred CCHHH----HHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHH
Confidence 57777 589999999999887764321 2234564 899999999999999999999999999999999999
Q ss_pred HhccCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEE
Q psy2177 146 VGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGS 225 (677)
Q Consensus 146 la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~ 225 (677)
+++++.+.++...++ +....|..+|+++||++|||++++|+.+.++++|||++|||+..+.|+|++ +|++|+|||+
T Consensus 80 lg~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~--~g~~~~LnG~ 155 (395)
T TIGR03204 80 LQSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEK--KGDKWIINGQ 155 (395)
T ss_pred HHhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEE--cCCEEEEeeE
Confidence 999887766443332 233467789999999999999999999999999999999999999999998 4556999999
Q ss_pred EEeecCccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCC
Q psy2177 226 KIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGV 305 (677)
Q Consensus 226 K~~isna~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~ 305 (677)
|+||||+..||+++|+|+++.. +.+..++++|+||++.|||++.+.....| +.++++|.|+||+||.+++||.+
T Consensus 156 K~~vt~a~~Ad~~lv~a~~~~~----~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~ 229 (395)
T TIGR03204 156 KTWTTLAQHADWIFCLCRTDPT----AKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEE 229 (395)
T ss_pred EEeecCCccCCeEEEEEEeCCC----CCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCC
Confidence 9999999999999999997421 11125789999999999999987666655 67789999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q psy2177 306 GNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMD- 384 (677)
Q Consensus 306 g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d- 384 (677)
++|+..++..++..|++.++ +|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++++++|.++...+
T Consensus 230 ~~g~~~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~ 307 (395)
T TIGR03204 230 NKGWDYAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGK 307 (395)
T ss_pred CchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998876 899999999999999999999999999999999999999999999999999975432
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhh
Q psy2177 385 NGSQDYHLEAAISKVFASEAAWYVTDEAIQI----------LGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFR 454 (677)
Q Consensus 385 ~~~~~~~~~~a~aK~~ase~a~~v~~~a~qi----------~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (677)
.+.......++++|+++++.+.+++++++|+ |||+||+.++ +.+
T Consensus 308 ~~~~~~~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~~~---------~~~----------------- 361 (395)
T TIGR03204 308 HGKGKPNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAM---------DWT----------------- 361 (395)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccc---------hhh-----------------
Confidence 2221224689999999999999999999985 7888888610 002
Q ss_pred cccCCCCCCChhhhhhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 455 GQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 455 ~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
++++++||| +| +..|++||+||+++.
T Consensus 362 --------~~~~~~~r~-----~~-----~~~i~~Gt~ei~~~~ 387 (395)
T TIGR03204 362 --------AQIAPSYFN-----NR-----KVSIYGGSNEIQRNI 387 (395)
T ss_pred --------hHHHHHHHh-----cc-----ccceeccHHHHHHHH
Confidence 469999999 99 999999999999988
No 27
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=6e-55 Score=481.35 Aligned_cols=356 Identities=27% Similarity=0.439 Sum_probs=316.3
Q ss_pred HHHHHHHHHhhCCCc--ccCcCC--------CCC---HHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCc
Q psy2177 85 VDPVTKFFDEVNDPL--KNDSLE--------TVE---PNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDL 151 (677)
Q Consensus 85 ~~~~~~f~~~~~~p~--~~d~~~--------~~p---~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~ 151 (677)
++.+++|+.+++.|. ..|++. .+| .++|+.|++.||+++.+|++|||.|++..++..+.|+++++|.
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 356677777776653 234443 388 6789999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeecC
Q psy2177 152 AVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN 231 (677)
Q Consensus 152 s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isn 231 (677)
++++.++.|. +...|..+|+++||++|+|++.+|+.++|+++|||.+|||+..++|+|+++++| +|+|||+|+|+||
T Consensus 82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~g-gy~l~G~K~~is~ 158 (407)
T cd01153 82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADG-SWRINGVKRFISA 158 (407)
T ss_pred HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCC-cEEEeeEEEEEeC
Confidence 9888766553 345678899999999999999999999999999999999999999999986444 5999999999999
Q ss_pred cccc----CEEEEEEEcCCCCCCCCcccCeEEEEEEecCC-----CCeeeCCCCCcCCCCCCCceEEEEcceeccccccc
Q psy2177 232 GGFA----EIMTVFAQTPVKDEKTGKVVDKVTAFIVERSF-----GGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVL 302 (677)
Q Consensus 232 a~~A----d~~lV~Art~~~d~~~g~~~~gis~FlVp~~~-----~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lL 302 (677)
+..| ++++|+|++... .++ ..++++|+||++. |||++.+.|+++|++++++++|.|+||+|| +|
T Consensus 159 ~~~a~~~~~~~~v~a~~~~~--~~~--~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~l 231 (407)
T cd01153 159 GEHDMSENIVHLVLARSEGA--PPG--VKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LI 231 (407)
T ss_pred CCcccccccEEEEEEeCCCC--CCC--CCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---ee
Confidence 9876 588899997521 112 2478999999987 899999999999999999999999999999 89
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC--------CCCcHHHHHHHHHHHHHHHHHHH
Q psy2177 303 GGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRR--------IDSFGTIQEKLARMALLHYVTES 374 (677)
Q Consensus 303 G~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~p--------i~~~~~vq~~La~m~~~~~aa~a 374 (677)
|.++.|++..+..++.+|+.+++.++|+++++++.+++|+++|.+||+| +.++|.+|++|++|.++++++++
T Consensus 232 g~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~ 311 (407)
T cd01153 232 GEEGMGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRA 311 (407)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 88899999999999999999999
Q ss_pred HHHHHHHhhhCCCCc-------------hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHH
Q psy2177 375 LAYMISGNMDNGSQD-------------YHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKA 441 (677)
Q Consensus 375 l~~~~a~~~d~~~~~-------------~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~ 441 (677)
+++.+++.+|..... ....++++|+++++.+.++++.+++++||.||.. +
T Consensus 312 ~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~-------------~---- 374 (407)
T cd01153 312 LDLYTATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTR-------------E---- 374 (407)
T ss_pred HHHHHHHhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecC-------------C----
Confidence 999999988864211 1456789999999999999999999999999999 8
Q ss_pred hhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 442 AKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
+|++|+||| ++ ...+++|+++|+++.
T Consensus 375 ---------------------~~l~r~~Rd-----~~-----~~~~~~Gt~~~~~~~ 400 (407)
T cd01153 375 ---------------------YPIEQYYRD-----AR-----ITTIYEGTTGIQALD 400 (407)
T ss_pred ---------------------CcHHHHHHh-----hh-----hheeecChHHHHHHH
Confidence 999999999 99 999999999999987
No 28
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=3.2e-53 Score=490.22 Aligned_cols=341 Identities=20% Similarity=0.286 Sum_probs=309.3
Q ss_pred CcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHhcCChhhhhccc
Q psy2177 102 DSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYL 181 (677)
Q Consensus 102 d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yL 181 (677)
|+...++.+.++.+.+.|+++..+|++ |.+ +...++.++|+++..|++++..+++|.++....|..+||++||++||
T Consensus 101 ~~~~~~~~~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L 177 (680)
T PLN02312 101 EQQREITMKRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWL 177 (680)
T ss_pred HHHHHhHHHHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHH
Confidence 344566778899999999999999995 333 57888899999999999888888899888778899999999999999
Q ss_pred cccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEE-----EEEEeecCc-cccCEEEEEEEcCCCCCCCCccc
Q psy2177 182 PRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILN-----GSKIWISNG-GFAEIMTVFAQTPVKDEKTGKVV 255 (677)
Q Consensus 182 p~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~Ln-----G~K~~isna-~~Ad~~lV~Art~~~d~~~g~~~ 255 (677)
|++.+|++++|||+|||++|||+..++|+|+++++|++|+|| |+|+||+|+ ..||+++|+||+... + +.
T Consensus 178 ~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~----~-~~ 252 (680)
T PLN02312 178 KDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHIN----G-KN 252 (680)
T ss_pred HHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCC----C-CC
Confidence 999999999999999999999999999999998778889999 799999998 689999999998531 1 23
Q ss_pred CeEEEEEEe-c--C---CCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCC----------------CcchHHHHH
Q psy2177 256 DKVTAFIVE-R--S---FGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGG----------------VGNGFKVAM 313 (677)
Q Consensus 256 ~gis~FlVp-~--~---~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~----------------~g~G~~~~~ 313 (677)
.|+++|+|| + + .|||++++..+|||+++.+++.|.||||+||.+|+||. +++||..++
T Consensus 253 ~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~ 332 (680)
T PLN02312 253 EGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFL 332 (680)
T ss_pred CCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHH
Confidence 689999998 3 3 79999999999999999999999999999999999984 678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC----C---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy2177 314 QILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGR----R---IDSFGTIQEKLARMALLHYVTESLAYMISGNMDNG 386 (677)
Q Consensus 314 ~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~----p---i~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~ 386 (677)
..++.+|+.+++.++|+++++++.|++|+.+|+|||. | |.+||.+|++|++|.+.+|++......+....+.+
T Consensus 333 ~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~ 412 (680)
T PLN02312 333 APLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKR 412 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999995 4 99999999999999999999888777777665543
Q ss_pred C----CchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCC
Q psy2177 387 S----QDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQV 462 (677)
Q Consensus 387 ~----~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (677)
. .+.+.+++++|.++++.+.+++++|+|+|||+||+. +
T Consensus 413 ~~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~-------------~------------------------- 454 (680)
T PLN02312 413 TPESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKT-------------E------------------------- 454 (680)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc-------------c-------------------------
Confidence 2 356789999999999999999999999999999999 8
Q ss_pred CChhhhhhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 463 FPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 463 ~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
+++++++|| ++ +..||||+|+|+++.
T Consensus 455 ~~l~~l~rd-----~~-----~~~t~EG~n~Vl~~~ 480 (680)
T PLN02312 455 NRVGQLKAE-----YD-----VQSTFEGDNNVLMQQ 480 (680)
T ss_pred CcHHHHHHh-----hh-----hheeecCcHHHHHHH
Confidence 999999999 99 999999999999998
No 29
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=9.4e-54 Score=482.09 Aligned_cols=404 Identities=20% Similarity=0.230 Sum_probs=327.8
Q ss_pred HHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHH-HhccCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCC
Q psy2177 110 NTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEI-VGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGK 188 (677)
Q Consensus 110 e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~-la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge 188 (677)
++++.+.+.||.++..++++| . +......+.+. .+..++...+.+++ +.+...++.+|+++||++|||++++|+
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~-~--~~~~~~~~~~~l~~~~~~g~~cp~~m--T~~a~~~l~~~~~e~~~~~lp~l~sg~ 164 (538)
T PRK11561 90 LLMQGLCANRVHNLAWEEDAR-S--GAFVARAARFMLHAQVEAGTLCPITM--TFAATPLLLQMLPAPFQDWLTPLLSDR 164 (538)
T ss_pred HHHHHHHHcCCccCCCCCccC-c--hHHHHHHHHHHHHhhhhHHhhchHHH--HHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence 567777889999999988876 2 22322333333 34455555555544 334567788899999999999999997
Q ss_pred -------------ccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeecCccccCEEEEEEEcCCCCCCCCccc
Q psy2177 189 -------------EFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVV 255 (677)
Q Consensus 189 -------------~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isna~~Ad~~lV~Art~~~d~~~g~~~ 255 (677)
++.++++|||++|||+.+++|+|++.+ |++|+|||+|+||| ++.||+++|+||++
T Consensus 165 ~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~-gg~w~LnG~K~fiS-a~~AD~~lVlArt~---------- 232 (538)
T PRK11561 165 YDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLA-DGSYRLVGHKWFFS-VPQSDAHLVLAQAK---------- 232 (538)
T ss_pred cccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECC-CCeEEEEEEEEEEE-chhhCEEEEEEEEC----------
Confidence 456999999999999999999999854 44699999999999 68999999999984
Q ss_pred CeEEEEEEecCCC-----CeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy2177 256 DKVTAFIVERSFG-----GVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGT 330 (677)
Q Consensus 256 ~gis~FlVp~~~~-----GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~Rl~~aa~~~G~ 330 (677)
+|+++|+||++.| ||++.+.++|||++++++++|.|+|| .+++||++|+|++.++.+++.+|+.+++.++|+
T Consensus 233 ~Gls~FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~ 309 (538)
T PRK11561 233 GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFDCALGSHGL 309 (538)
T ss_pred CceEEEEEECCCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999988 79999999999999999999999999 489999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc-----hHHHHHHHHHHHHHHH
Q psy2177 331 MRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQD-----YHLEAAISKVFASEAA 405 (677)
Q Consensus 331 a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~-----~~~~~a~aK~~ase~a 405 (677)
++++++.+++|+++|++||+||+++|.+|++|++|.++++++++++|+++..+|.+..+ .++.++++|.++++.+
T Consensus 310 a~~Al~~A~~yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~a 389 (538)
T PRK11561 310 MRRAFSVAIYHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRG 389 (538)
T ss_pred HHHHHHHHHHHHHhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999976421 3467789999999999
Q ss_pred HHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCcc
Q psy2177 406 WYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVT 485 (677)
Q Consensus 406 ~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~ 485 (677)
.+++++|||++||+||++ + ++++|+||| ++ ++
T Consensus 390 ~~v~~~Amqv~GG~Gy~e-------------e-------------------------~~lerl~RD-----a~-----v~ 421 (538)
T PRK11561 390 IPFVAEAMEVLGGIGYCE-------------E-------------------------SELPRLYRE-----MP-----VN 421 (538)
T ss_pred HHHHHHHHHhcCCccCCC-------------C-------------------------cHHHHHHHH-----Hh-----hh
Confidence 999999999999999999 8 999999999 99 99
Q ss_pred ccccCchHHhhhccCCCcchhHHHHHHHHhhhHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCCCccccCcchHH
Q psy2177 486 KFFDEVNDPLKNDSLETVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAE 565 (677)
Q Consensus 486 ~i~eGtn~i~~~~~~~~~~~ia~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 565 (677)
.|||||++|++++ +.+ .+......+..+...+..-.+... .+......+...+.. ..+.
T Consensus 422 ~I~eGt~~i~~ld-------v~r-~l~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~ 480 (538)
T PRK11561 422 SIWEGSGNIMCLD-------VLR-VLNKQPGVYDLLSEAFVEVKGQDR-HFDRAVRQLQQRLRK------------PAEE 480 (538)
T ss_pred hcccCCHHHHHHH-------HHH-HHhcChhHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhcC------------CcHH
Confidence 9999999999998 432 222111222222222221111111 233344444433211 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q psy2177 566 SGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAA 604 (677)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~q~~l~rla~ 604 (677)
.+|.+.+.++...++ .+|.++++..+.+.|+-.||+.
T Consensus 481 ~ar~~~~~~a~~~~~--~ll~~~a~~~~~~~~~~~~~~~ 517 (538)
T PRK11561 481 QGREITQQLFLLGCG--AQMLRHASPPLAQAWCQMMLDT 517 (538)
T ss_pred HHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHhhh
Confidence 789999888888777 8899999999999999999975
No 30
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=3.6e-54 Score=470.68 Aligned_cols=362 Identities=23% Similarity=0.331 Sum_probs=313.3
Q ss_pred HHHHHHHHHHHHhhCCCccc-------CcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhH
Q psy2177 82 KMLVDPVTKFFDEVNDPLKN-------DSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVG 154 (677)
Q Consensus 82 ~~l~~~~~~f~~~~~~p~~~-------d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~ 154 (677)
+++.+.+++|+++++.|... +..+.+|+++++.|++.||+++.+|++|||.|++..+++.+.|++++.|.+++
T Consensus 4 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~ 83 (380)
T cd01152 4 EAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVP 83 (380)
T ss_pred HHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCCcc
Confidence 47889999999998877432 34567899999999999999999999999999999999999999999998887
Q ss_pred HH-HHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeecCcc
Q psy2177 155 IV-LGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGG 233 (677)
Q Consensus 155 ~~-l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isna~ 233 (677)
+. +..| .....+..+|+++||++||+++.+|+.+.++++|||..|||+..+.|+|+++ +++|+|||+|+||||++
T Consensus 84 ~~~~~~~--~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~L~G~K~~it~~~ 159 (380)
T cd01152 84 FNQIGID--LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRD--GDDWVVNGQKIWTSGAH 159 (380)
T ss_pred cchhhHH--HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEc--CCeEEEecEEEEEcCcc
Confidence 65 3332 2345688899999999999999999999999999999999999999999984 44699999999999999
Q ss_pred ccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHHHHH
Q psy2177 234 FAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAM 313 (677)
Q Consensus 234 ~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~~~~ 313 (677)
.||+++|+|+++.. +....++++|+||++.|||++.+.|+++| +++++++.|+||+||.+++||.+++|+..+.
T Consensus 160 ~ad~~lv~a~~~~~----~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~ 233 (380)
T cd01152 160 YADWAWLLVRTDPE----APKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAM 233 (380)
T ss_pred ccCEEEEEEEeCCC----ccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHH
Confidence 99999999997421 11224789999999999999999999988 5678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHH
Q psy2177 314 QILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLE 393 (677)
Q Consensus 314 ~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~~~~ 393 (677)
..++..|+.+++.+ ..+++.+++|+++|.+||+||.++|.+|++|++|.+++++++++++.+++.+|.+.. ...+
T Consensus 234 ~~l~~~r~~~~~~~----~~~~~~a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~-~~~~ 308 (380)
T cd01152 234 TTLNFERVSIGGSA----ATFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKP-PGAE 308 (380)
T ss_pred HHHHhcccccchhh----hHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CChH
Confidence 99999998765544 444556778999999999999999999999999999999999999999999987643 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhh
Q psy2177 394 AAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQ 473 (677)
Q Consensus 394 ~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~ 473 (677)
.+++|+++++.+.+++++++|++||.||.. +-++ | +-..++++|++||
T Consensus 309 ~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~-------------~~~~--------------~---~~~~~~~~r~~rd-- 356 (380)
T cd01152 309 ASIAKLFGSELAQELAELALELLGTAALLR-------------DPAP--------------G---AELAGRWEADYLR-- 356 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccc-------------cccc--------------c---cccccHHHHHHHh--
Confidence 899999999999999999999999999998 3000 0 0001589999999
Q ss_pred hhhhhhhcCCccccccCchHHhhhc
Q psy2177 474 SDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 474 ~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
++ ...+++|++++++..
T Consensus 357 ---~~-----~~~~~~g~~~~~~~~ 373 (380)
T cd01152 357 ---SR-----ATTIYGGTSEIQRNI 373 (380)
T ss_pred ---Cc-----cceeeccHHHHHHHH
Confidence 99 999999999999987
No 31
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=8.2e-54 Score=509.41 Aligned_cols=375 Identities=26% Similarity=0.366 Sum_probs=326.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhCCCcc--cCcC-------CCCC-HHHHHHHH-HcCCCCCCCccc-------------
Q psy2177 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLK--NDSL-------ETVE-PNTLEGLW-DLGAFSLQVPQD------------- 128 (677)
Q Consensus 73 l~~e~~~~~~~l~~~~~~f~~~~~~p~~--~d~~-------~~~p-~e~~~~l~-~~Gl~~l~vP~e------------- 128 (677)
+++|+ +++.+.+++|+++.+.|.. .++. ..+| .+.|+.+. ++||+++.+|++
T Consensus 402 ~s~~~----~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~ 477 (822)
T PLN02876 402 PSEKV----LELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDN 477 (822)
T ss_pred CCHHH----HHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccc
Confidence 46666 5789999999999876633 2211 2377 57888875 999999999996
Q ss_pred -----------CCCCCCCHHHHHHHHHHHhccCchhHHH-HHHhhhhHHHHHHhcCChhhhhccccccccCCcccccccc
Q psy2177 129 -----------LGGLGLTNTQYARMVEIVGGNDLAVGIV-LGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLT 196 (677)
Q Consensus 129 -----------yGG~Gls~~~~~~v~e~la~~d~s~~~~-l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alT 196 (677)
|||.|++..+++.++|++++++.+.... ..++...+...|..+|+++||++|||++++|++++|+++|
T Consensus 478 ~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~t 557 (822)
T PLN02876 478 KHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMT 557 (822)
T ss_pred cccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEec
Confidence 9999999999999999999876442211 2223222335688899999999999999999999999999
Q ss_pred CCC-CCCCCCCCceEEEEcCCCCEEEEEEEEEeecCc--cccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeC
Q psy2177 197 EPA-SGSDAGSIKTRAVLSPDGKHYILNGSKIWISNG--GFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSG 273 (677)
Q Consensus 197 Ep~-~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isna--~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~ 273 (677)
||+ +|||+.+++|+|++ +|++|+|||+|+||||+ +.||+++|+|++... +....++++|+||++.|||++.
T Consensus 558 Ep~~~gsd~~~~~t~a~~--~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~----~~~~~~~s~flV~~~~pGv~i~ 631 (822)
T PLN02876 558 EPQVASSDATNIECSIRR--QGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFN----APKHKQQSMILVDIQTPGVQIK 631 (822)
T ss_pred CCCccCcccccceEEEEE--cCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCC----CCCCCcceEEEEeCCCCCceee
Confidence 997 78999999999998 45569999999999999 479999999998421 1112568999999999999999
Q ss_pred CCCCcCCCCCC--CceEEEEcceecccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy2177 274 PPEKKMGIKAS--NTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRR 351 (677)
Q Consensus 274 ~~~~~~G~rg~--~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~p 351 (677)
++|+++|++++ ++++|.|+||+||.+++||.+++|+..++..++.+|+..++.++|+++++++.+++|+++|+|||+|
T Consensus 632 ~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~ 711 (822)
T PLN02876 632 RPLLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKL 711 (822)
T ss_pred cccceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Confidence 99999999984 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhh
Q psy2177 352 IDSFGTIQEKLARMALLHYVTESLAYMISGNMDN-GSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASAS 430 (677)
Q Consensus 352 i~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~-~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~ 430 (677)
|+++|.+|++|++|.+.+++++++++.++..+|. +..+....++++|+++++.+.+++++++|++||+||+.
T Consensus 712 i~~~q~vq~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~------- 784 (822)
T PLN02876 712 IAQHGSFLSDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSS------- 784 (822)
T ss_pred hhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC-------
Confidence 9999999999999999999999999999999987 33344678999999999999999999999999999999
Q ss_pred HHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCccccccCchHHhhhccCCCcchhHHHH
Q psy2177 431 AAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEG 510 (677)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~~~~~~~~ia~~~ 510 (677)
+ ++++|+||| +| +.+|++|++++++.. |+...
T Consensus 785 ------e-------------------------~~l~r~~Rd-----ar-----~~~i~~Gt~e~~~~~-------ia~~~ 816 (822)
T PLN02876 785 ------D-------------------------TVLAHLWAT-----AR-----TLRIADGPDEVHLGT-------IAKLE 816 (822)
T ss_pred ------c-------------------------chHHHHHHh-----hh-----hcccccChHHHHHHH-------HHHHH
Confidence 8 999999999 99 999999999999998 77654
Q ss_pred HH
Q psy2177 511 IQ 512 (677)
Q Consensus 511 l~ 512 (677)
++
T Consensus 817 ~~ 818 (822)
T PLN02876 817 LQ 818 (822)
T ss_pred HH
Confidence 43
No 32
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=2.3e-53 Score=470.41 Aligned_cols=350 Identities=23% Similarity=0.309 Sum_probs=304.2
Q ss_pred HHHHHHHHhhCCC--cccCcCCC------CC---HHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhH
Q psy2177 86 DPVTKFFDEVNDP--LKNDSLET------VE---PNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVG 154 (677)
Q Consensus 86 ~~~~~f~~~~~~p--~~~d~~~~------~p---~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~ 154 (677)
.++.++.+.. .| ...|+.+. +| .++++.+.+.||+++ +|++|||.| ......+.+.++..+.+.+
T Consensus 35 ~~~~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~ 110 (418)
T cd01154 35 YELARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLL 110 (418)
T ss_pred HHHHHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhcc
Confidence 3344455544 45 34666666 78 678999999999999 888888766 3444556777777777777
Q ss_pred HHHHHhhhhHHHHHHhcCChhhhhccccccccCC----ccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeec
Q psy2177 155 IVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGK----EFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS 230 (677)
Q Consensus 155 ~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge----~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~is 230 (677)
+.+.+|.. ....|..+|+++|| +|||++++|+ +++|+++|||++|||+.+++|+|++++ |++|+|||+|+|+|
T Consensus 111 ~p~~~~~~-~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~-g~~~~LnG~K~f~s 187 (418)
T cd01154 111 CPLTMTDA-AVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSG-GGVYRLNGHKWFAS 187 (418)
T ss_pred CcHHHHHH-HHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECC-CCcEEEEEEEEEec
Confidence 76666544 45788899998875 6999999997 899999999999999999999999852 55699999999999
Q ss_pred CccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCC-----CeeeCCCCCcCCCCCCCceEEEEcceecccccccCCC
Q psy2177 231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFG-----GVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGV 305 (677)
Q Consensus 231 na~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~-----GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~ 305 (677)
++ .||+++|+||++... .+.+|+++|+||++.| ||++.+.|+++|++++++++|.|+|| .+++||.+
T Consensus 188 ~a-~Ad~~lv~Art~~~~----~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~~ 259 (418)
T cd01154 188 AP-LADAALVLARPEGAP----AGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGDE 259 (418)
T ss_pred Cc-ccCEEEEEEECCCCC----CCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCc---CccccCCC
Confidence 99 999999999986321 2236899999999875 99999999999999999999999998 48999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy2177 306 GNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDN 385 (677)
Q Consensus 306 g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~ 385 (677)
|+|++.++..++.+|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.+++++++++++.++..+|.
T Consensus 260 g~G~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~ 339 (418)
T cd01154 260 GKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDR 339 (418)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred CCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccC
Q psy2177 386 GSQD-------YHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLN 458 (677)
Q Consensus 386 ~~~~-------~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (677)
...+ .++.++++|+++++.+.+++++++|++||.||+. +
T Consensus 340 ~~~~~~~~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~-------------~--------------------- 385 (418)
T cd01154 340 AAADKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLE-------------E--------------------- 385 (418)
T ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcC-------------C---------------------
Confidence 3211 2346889999999999999999999999999999 7
Q ss_pred CCCCCChhhhhhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 459 TNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 459 ~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
+|++|+||| ++ +.+|||||++|++++
T Consensus 386 ----~~l~r~~RD-----a~-----~~~i~~Gt~~i~~~~ 411 (418)
T cd01154 386 ----WPVARLHRE-----AQ-----VTPIWEGTGNIQALD 411 (418)
T ss_pred ----ChHHHHHhc-----Cc-----CcceeccHHHHHHHH
Confidence 999999999 99 999999999999998
No 33
>KOG0138|consensus
Probab=100.00 E-value=2.8e-54 Score=435.21 Aligned_cols=373 Identities=26% Similarity=0.380 Sum_probs=343.3
Q ss_pred ccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhCCCc--ccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHH
Q psy2177 63 TNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYA 140 (677)
Q Consensus 63 ~~~~~~~p~~l~~e~~~~~~~l~~~~~~f~~~~~~p~--~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~ 140 (677)
|++-+.+.+.|++|| ..+.+.+|+++++.+.|. +..+...||++++.+|..+|++|-.+ +-||-.|+|.+.|.
T Consensus 45 ~qD~~~l~dqLT~dE----~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG~ti-kGYGCaG~S~vayg 119 (432)
T KOG0138|consen 45 WQDPLVLEDQLTEDE----IAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLGPTI-KGYGCAGVSSVAYG 119 (432)
T ss_pred ccchhhhhhhcCHHH----HHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhccccccCcc-cCcCCCchHHHHHH
Confidence 445555556688888 579999999999999883 45577899999999999999999988 78999999999999
Q ss_pred HHHHHHhccCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEE
Q psy2177 141 RMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHY 220 (677)
Q Consensus 141 ~v~e~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y 220 (677)
.+..++.+.|.+....+++|.|++..+|..||+++||+||||.|++|+.++||++|||++|||++.++|+|++++.++.|
T Consensus 120 l~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~kty 199 (432)
T KOG0138|consen 120 LLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTY 199 (432)
T ss_pred HHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceE
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeecCccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceeccccc
Q psy2177 221 ILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVEN 300 (677)
Q Consensus 221 ~LnG~K~~isna~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~ 300 (677)
.|||+|.||+|.++||+++|+||... .+.|.-|||+++.+|++.-+.+.|+++|.+.++.|.+|||+||+++
T Consensus 200 klNGsKtWI~nsp~aDl~vvwAr~~t--------~n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~ 271 (432)
T KOG0138|consen 200 KLNGSKTWITNSPMADLFVVWARCET--------DNKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEEN 271 (432)
T ss_pred EECCeeeeecCCcccceEEEEEeccc--------CCceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhh
Confidence 99999999999999999999999752 1468889999999999999999999999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2177 301 VLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMIS 380 (677)
Q Consensus 301 lLG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a 380 (677)
+|... .++.--+.+||..|++++...+|++..|++.+.+|...|+|||+|++.+|.+|.||++|..++.+.-.+++++.
T Consensus 272 ~LPg~-~s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lgl~~clrl~ 350 (432)
T KOG0138|consen 272 LLPGA-SSLQGPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLGLQACLRLG 350 (432)
T ss_pred cCCCc-cccCCchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99654 34555788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCC
Q psy2177 381 GNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTN 460 (677)
Q Consensus 381 ~~~d~~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (677)
++-|.+... .-..++.|.+.+-.+.++++.+.+++||.|... +
T Consensus 351 rLkd~g~~t-p~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~d-------------e----------------------- 393 (432)
T KOG0138|consen 351 RLKDQGKAT-PEQISLLKRNNCGKALEIARQARDMLGGNGISD-------------E----------------------- 393 (432)
T ss_pred hhhhcccCC-hhhhHHHhhccchhHHHHHHHHHHHhcCCcchh-------------H-----------------------
Confidence 999987543 456889999999999999999999999999999 8
Q ss_pred CCCChhhhhhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 461 QVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 461 ~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
+.+-|.+.| .. ..-+||||-||+.+.
T Consensus 394 --yhv~rh~~n-----LE-----~vnTYEGThDihaLi 419 (432)
T KOG0138|consen 394 --YHVIRHAMN-----LE-----AVNTYEGTHDIHALI 419 (432)
T ss_pred --HHHHHHHcC-----cc-----ceecccccchHHHHh
Confidence 889999988 66 777899999999987
No 34
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=7.9e-52 Score=451.45 Aligned_cols=336 Identities=21% Similarity=0.256 Sum_probs=298.7
Q ss_pred ccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHhcCChhhhhc
Q psy2177 100 KNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAK 179 (677)
Q Consensus 100 ~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~ 179 (677)
+.|+.+.+|++.|+.|++.||+++.+|++|||.|++..+++.++|++++.|+++++.+.+|... ...+..+|+++||++
T Consensus 16 ~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~-~~~l~~~g~~~~~~~ 94 (377)
T cd01163 16 ERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGF-VEALLLAGPEQFRKR 94 (377)
T ss_pred hhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHHHhcCcHHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999888887654 467788999999999
Q ss_pred cccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeecCccccCEEEEEEEcCCCCCCCCcccCeEE
Q psy2177 180 YLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVT 259 (677)
Q Consensus 180 yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isna~~Ad~~lV~Art~~~d~~~g~~~~gis 259 (677)
|++++.+|++++ .++|||++|+ +..+.|++++ +|++|+|||+|.||||+..||+++|+|+++. .+++
T Consensus 95 ~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~--~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~---------~~~~ 161 (377)
T cd01163 95 WFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVR--DGGGYVLNGKKFYSTGALFSDWVTVSALDEE---------GKLV 161 (377)
T ss_pred HHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEe--cCCEEEEeceEEeecCCccceEEEEEEEcCC---------CcEE
Confidence 999999999665 5999999886 7777777776 4556999999999999999999999999641 2478
Q ss_pred EEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2177 260 AFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAV 339 (677)
Q Consensus 260 ~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~ 339 (677)
+|+||++.|||++.+.|+++|++++++++|+|+||+||.+++||.++.|+. ....+...|+..++.++|+++++++.++
T Consensus 162 ~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~al~~~~ 240 (377)
T cd01163 162 FAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAALDDAV 240 (377)
T ss_pred EEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988875 3334567899999999999999999999
Q ss_pred HHHhhhc-ccCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC---C--------chHHHHHHHHHHHHH
Q psy2177 340 DHATQRV-QFGR----RIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGS---Q--------DYHLEAAISKVFASE 403 (677)
Q Consensus 340 ~~a~~R~-qfg~----pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~---~--------~~~~~~a~aK~~ase 403 (677)
+|+++|+ +||+ ++.++|.+|++|++|.+++++++++++.++..+|.+. . +....++++|+++++
T Consensus 241 ~~~~~R~~~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~ 320 (377)
T cd01163 241 AYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAKVVVTR 320 (377)
T ss_pred HHHHhcCCCCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 7876 5789999999999999999999999999999887631 1 235678899999999
Q ss_pred HHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCC
Q psy2177 404 AAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDP 483 (677)
Q Consensus 404 ~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~p 483 (677)
.+.++++.++|++||.||+. + +|++|+||| ++
T Consensus 321 ~a~~~~~~a~q~~Gg~g~~~-------------~-------------------------~~l~r~~Rd-----~~----- 352 (377)
T cd01163 321 LALDATSRLFEVGGASATAR-------------E-------------------------HNLDRHWRN-----AR----- 352 (377)
T ss_pred HHHHHHHHHHHHhCchhhcc-------------c-------------------------cCCcchhhh-----hh-----
Confidence 99999999999999999999 8 999999999 99
Q ss_pred ccccccCchHHhhhc
Q psy2177 484 VTKFFDEVNDPLKND 498 (677)
Q Consensus 484 i~~i~eGtn~i~~~~ 498 (677)
+..++...+...++.
T Consensus 353 ~~~~h~~~~~~~~~~ 367 (377)
T cd01163 353 THTLHNPVIYKERAV 367 (377)
T ss_pred hhhccCHHHHHHHHh
Confidence 778777777666655
No 35
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=8.3e-49 Score=451.73 Aligned_cols=295 Identities=18% Similarity=0.226 Sum_probs=266.2
Q ss_pred chhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEE-----EE
Q psy2177 151 LAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILN-----GS 225 (677)
Q Consensus 151 ~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~Ln-----G~ 225 (677)
+.....+.+|.++....|..+||++||++|||++.+|+.++|||+|||++|||+.+++|+|+++++|++|+|| |+
T Consensus 89 ~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~ 168 (646)
T PTZ00460 89 PQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAV 168 (646)
T ss_pred cCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeE
Confidence 3333455677776667888999999999999999999999999999999999999999999998778889998 99
Q ss_pred EEeecC-ccccCEEEEEEEcCCCCCCCCcccCeEEEEEEec-------CCCCeeeCCCCCcCCCCCCCceEEEEcceecc
Q psy2177 226 KIWISN-GGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVER-------SFGGVTSGPPEKKMGIKASNTAEVYYEDVKVP 297 (677)
Q Consensus 226 K~~isn-a~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~-------~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP 297 (677)
|+||+| +..||+++|+||+... | +..|+++|+||. ..|||++++..+|||+++.+++.|.||||+||
T Consensus 169 K~wi~~~g~~A~~~vV~Arl~~~----~-~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP 243 (646)
T PTZ00460 169 KFWPGELGFLCNFALVYAKLIVN----G-KNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIP 243 (646)
T ss_pred EEccCCCCCCCCEEEEEEEECcC----C-CCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEEC
Confidence 999998 5789999999998531 2 236899999993 24999999999999999999999999999999
Q ss_pred cccccCC------Ccc----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC------CCCCcHHHHH
Q psy2177 298 VENVLGG------VGN----G-FKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGR------RIDSFGTIQE 360 (677)
Q Consensus 298 ~~~lLG~------~g~----G-~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~------pi~~~~~vq~ 360 (677)
.+|+||. +|. | ++..+..+..+|+.+++.++|++++++++|++|+.+|+|||+ ||++||.+|+
T Consensus 244 ~~nlLg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~ 323 (646)
T PTZ00460 244 LDSLLARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQ 323 (646)
T ss_pred HHHhCCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHH
Confidence 9999986 453 5 888899999999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCC-----CCc------hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhh
Q psy2177 361 KLARMALLHYVTESLAYMISGNMDNG-----SQD------YHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASA 429 (677)
Q Consensus 361 ~La~m~~~~~aa~al~~~~a~~~d~~-----~~~------~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~ 429 (677)
+|++|.+.+|+++.+.+.+++.++.. ..+ .+.+++++|.++++.+.+++++|+|+|||+||+.
T Consensus 324 rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~------ 397 (646)
T PTZ00460 324 KLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGHGYAH------ 397 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc------
Confidence 99999999999999999998887642 112 3678999999999999999999999999999999
Q ss_pred hHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 430 SAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
+ ++++++||| ++ +..|+||+|+|+++.
T Consensus 398 -------~-------------------------~~l~~~~rd-----a~-----~~~t~eG~n~vl~~~ 424 (646)
T PTZ00460 398 -------Y-------------------------SGLPAIYFD-----MS-----PNITLEGENQIMYLQ 424 (646)
T ss_pred -------c-------------------------CcHHHHHHH-----hc-----cceeecCcHHHHHHH
Confidence 8 999999999 99 999999999999988
No 36
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=5.2e-48 Score=444.74 Aligned_cols=311 Identities=24% Similarity=0.305 Sum_probs=278.9
Q ss_pred CHHHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEc
Q psy2177 135 TNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLS 214 (677)
Q Consensus 135 s~~~~~~v~e~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~ 214 (677)
++.++..+.|+++..|++++..+++|.++....|..+||++||++|||++.+|++++|||+|||++|||+..++|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 56778888999999998887777888887778899999999999999999999999999999999999999999999996
Q ss_pred CCCCEEEEE-----EEEEeecCccc-cCEEEEEEEcCCCCCCCCcccCeEEEEEEecC-------CCCeeeCCCCCcCCC
Q psy2177 215 PDGKHYILN-----GSKIWISNGGF-AEIMTVFAQTPVKDEKTGKVVDKVTAFIVERS-------FGGVTSGPPEKKMGI 281 (677)
Q Consensus 215 ~dG~~y~Ln-----G~K~~isna~~-Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~-------~~GV~v~~~~~~~G~ 281 (677)
++.++|+|| |+|+||+|++. |++++|+||+... | +..|+++|+||.+ .|||++++.++|+|+
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~----g-~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~ 234 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITP----G-KNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGL 234 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccC----C-CCCCeEEEEEeccccccCCCCCCeEEeecccccCC
Confidence 644679999 99999999864 9999999998532 2 1368999999952 399999999999999
Q ss_pred CCCCceEEEEcceecccccccCC----------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2177 282 KASNTAEVYYEDVKVPVENVLGG----------------VGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQR 345 (677)
Q Consensus 282 rg~~t~~v~fddV~VP~~~lLG~----------------~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R 345 (677)
++.+++.|.||||+||.+|+||. ++.|+..++..++.+|+.+++.++|.+++++.+|++|+..|
T Consensus 235 ~g~dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R 314 (610)
T cd01150 235 NGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVR 314 (610)
T ss_pred CCCCeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 99999999999999999999986 67899999999999999999999999999999999999999
Q ss_pred cccCCC-------CCCcHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhCCC----CchHHHHHHHHHHHHHHHHH
Q psy2177 346 VQFGRR-------IDSFGTIQEKLARMALLHYVTESLAYMI-------SGNMDNGS----QDYHLEAAISKVFASEAAWY 407 (677)
Q Consensus 346 ~qfg~p-------i~~~~~vq~~La~m~~~~~aa~al~~~~-------a~~~d~~~----~~~~~~~a~aK~~ase~a~~ 407 (677)
+|||.| |.+||.+|++|++|.+..|+++.....+ ...++.+. ++.+.+++++|.++++.+.+
T Consensus 315 ~qfg~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~ 394 (610)
T cd01150 315 RQFGPKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQ 394 (610)
T ss_pred eecCCCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999876443332 22334332 24577899999999999999
Q ss_pred HHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCcccc
Q psy2177 408 VTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKF 487 (677)
Q Consensus 408 v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i 487 (677)
++++|+|+|||+||+. + +++++++|| ++ +..|
T Consensus 395 ~~~~~rq~~GG~Gy~~-------------~-------------------------~~l~~l~~d-----~~-----~~~t 426 (610)
T cd01150 395 GIQECREACGGHGYLA-------------M-------------------------NRLPTLRDD-----ND-----PFCT 426 (610)
T ss_pred HHHHHHHHhcCccchh-------------h-------------------------cChHHHHhh-----cc-----ceee
Confidence 9999999999999999 8 999999999 99 9999
Q ss_pred ccCchHHhhhc
Q psy2177 488 FDEVNDPLKND 498 (677)
Q Consensus 488 ~eGtn~i~~~~ 498 (677)
|||+|+|+.+.
T Consensus 427 ~EG~n~vl~~~ 437 (610)
T cd01150 427 YEGDNTVLLQQ 437 (610)
T ss_pred eecchHhHHHH
Confidence 99999999998
No 37
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.4e-45 Score=422.50 Aligned_cols=436 Identities=17% Similarity=0.170 Sum_probs=315.9
Q ss_pred HHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEE-----EEEEeecC
Q psy2177 157 LGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILN-----GSKIWISN 231 (677)
Q Consensus 157 l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~Ln-----G~K~~isn 231 (677)
+.+|.++....|..+||++||++|||++.+|+.++|||+|||++|||+.+++|+|+++++|++|+|| |+|||++|
T Consensus 99 ~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~ 178 (664)
T PLN02443 99 TDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGG 178 (664)
T ss_pred eeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecC
Confidence 4566666667888999999999999999999999999999999999999999999998778889998 99999999
Q ss_pred c-cccCEEEEEEEcCCCCCCCCcccCeEEEEEEecC-------CCCeeeCCCCCcCC---CCCCCceEEEEcceeccccc
Q psy2177 232 G-GFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERS-------FGGVTSGPPEKKMG---IKASNTAEVYYEDVKVPVEN 300 (677)
Q Consensus 232 a-~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~-------~~GV~v~~~~~~~G---~rg~~t~~v~fddV~VP~~~ 300 (677)
+ ..||+++|+||+... | +..|+++|+||.+ .|||++++.++|+| .++.+++.|.|+||+||.+|
T Consensus 179 ~~~~A~~~vV~Arl~~~----~-~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~n 253 (664)
T PLN02443 179 LGKVSTHAVVYARLITN----G-KDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQ 253 (664)
T ss_pred CcccCCEEEEEEEECCC----C-CCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHH
Confidence 7 589999999998532 1 2368999999975 79999999999999 56688999999999999999
Q ss_pred ccCCC------cchH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC--CcHH-----HHHH
Q psy2177 301 VLGGV------GNGF------KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRID--SFGT-----IQEK 361 (677)
Q Consensus 301 lLG~~------g~G~------~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~--~~~~-----vq~~ 361 (677)
+||.. |.++ +..+..+..+|+.+++.++|++++++++|++|+.+|+|||.|++ ++|. +|++
T Consensus 254 lLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~r 333 (664)
T PLN02443 254 MLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSR 333 (664)
T ss_pred cCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHH
Confidence 99863 3333 35667889999999999999999999999999999999999987 5554 5999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhC-------CC----CchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhh
Q psy2177 362 LARMALLHYVTESLAYMISGNMDN-------GS----QDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASAS 430 (677)
Q Consensus 362 La~m~~~~~aa~al~~~~a~~~d~-------~~----~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~ 430 (677)
|++|.+.+++++.+.+.++...+. +. .+.+..++++|.++++.+.+++++|+|+|||+||+.
T Consensus 334 L~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~------- 406 (664)
T PLN02443 334 LFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLC------- 406 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc-------
Confidence 999999999999999988876653 11 124556899999999999999999999999999999
Q ss_pred HHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCccccccCchHHhhhccCCCcchhHHHH
Q psy2177 431 AAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEG 510 (677)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~~~~~~~~ia~~~ 510 (677)
+ +++++++|| ++ +..|+||+|+|+++. ++..-
T Consensus 407 ------~-------------------------~~l~~l~~d-----~~-----~~~t~EGdn~Vl~~~-------iar~l 438 (664)
T PLN02443 407 ------S-------------------------SGLPELFAV-----YV-----PACTYEGDNVVLLLQ-------VARFL 438 (664)
T ss_pred ------c-------------------------CcHHHHHhh-----hh-----cceeecCcHHHHHHH-------HHHHH
Confidence 8 999999999 99 999999999999988 77543
Q ss_pred HHHHhhhHHHHHHHh--cCCCCchhHHHHHHHHHHHHHhcCCCC-CCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2177 511 IQYAGGHLRELQKAF--KNPTAHLGLIIGEVKKRGLKSIGLSTP-PSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLK 587 (677)
Q Consensus 511 l~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 587 (677)
+. .+.+.. ++|.+..+++ ... ...+..... ..-.+... .+.....++....++...+..-+.+
T Consensus 439 l~-------~~~~~~~~~~~~~~~~yl-~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~ 504 (664)
T PLN02443 439 MK-------TVSQLGSGKKPVGTTAYM-GRV----QHLLQCRCGVQTAEDWLN--PSVVLEAFEARAARMAVTCAQNLSK 504 (664)
T ss_pred HH-------HHHHhhcCCCCcchHHHH-hhh----hhhhcccccccccccccC--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32 222221 1222222221 111 111110000 00001111 1222233333333332221111111
Q ss_pred hccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy2177 588 YGKG----VVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDS 663 (677)
Q Consensus 588 ~g~~----~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~ 663 (677)
+.+ .-.-+..+.+++.+-++.|....-+.+..+ ..+..+....|-.+...-+...+++.+..+..+.+++.
T Consensus 505 -~~~~~~a~n~~~~~~~~~a~ah~~~~~~~~f~~~~~~----~~~~~~~~~~L~~l~~L~~l~~i~~~~~~fl~~~~ls~ 579 (664)
T PLN02443 505 -FENQEAGFQELSADLVEAAVAHCQLIVVSKFIEKLQQ----DIPGKGVKKQLQNLCYIYALYLLHKHLGDFLSTGCITP 579 (664)
T ss_pred -cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCH
Confidence 111 112234556777777777766665554332 12233334455555656678888888888887767765
Q ss_pred chHHHHHHH
Q psy2177 664 YTKLGDIAK 672 (677)
Q Consensus 664 ~~~~~~~~~ 672 (677)
+.. +.|-+
T Consensus 580 ~~~-~~i~~ 587 (664)
T PLN02443 580 KQA-SLAND 587 (664)
T ss_pred HHH-HHHHH
Confidence 433 44433
No 38
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=7.1e-47 Score=411.67 Aligned_cols=328 Identities=16% Similarity=0.157 Sum_probs=280.8
Q ss_pred ccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHhcCChhhhhc
Q psy2177 100 KNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAK 179 (677)
Q Consensus 100 ~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~ 179 (677)
+.|+++.+|.+.|+.|++.||+++.+|++|||.|++..+.+.+.|++++.|+++++.+..+.. ....+..+++++|++.
T Consensus 16 ~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~~-~~~~~~~~~~~~~~~~ 94 (370)
T cd01159 16 EAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVAT-HSRMLAAFPPEAQEEV 94 (370)
T ss_pred HHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHH-HHHHHHhCCHHHHHHH
Confidence 367778999999999999999999999999999999999999999999999998877655432 3355667899999998
Q ss_pred cccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeecCccccCEEEEEEEcCCCCCCCCcccCeEE
Q psy2177 180 YLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVT 259 (677)
Q Consensus 180 yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isna~~Ad~~lV~Art~~~d~~~g~~~~gis 259 (677)
|++.. .+. + .|+ ..+.|+|+++ |++|+|||+|.|||++..||+++|+|+++.. ++ ..+++
T Consensus 95 ~~~~~-~~~-~---------~g~--~~~~t~A~~~--~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~---~~--~~~~~ 154 (370)
T cd01159 95 WGDGP-DTL-L---------AGS--YAPGGRAERV--DGGYRVSGTWPFASGCDHADWILVGAIVEDD---DG--GPLPR 154 (370)
T ss_pred hCCCC-Cce-E---------Eee--ecCCceeEEe--CCeEEEeccccCccCCCcCceeEeeeECCCC---CC--CCcce
Confidence 88742 111 1 111 3457888884 4569999999999999999999999998521 12 25799
Q ss_pred EEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCc------chHH---HHHHHHHHHHHHHHHHHHHH
Q psy2177 260 AFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVG------NGFK---VAMQILNNGRFGMAAALAGT 330 (677)
Q Consensus 260 ~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g------~G~~---~~~~~l~~~Rl~~aa~~~G~ 330 (677)
+|+||++ ||++.+.|+++|++++++++|.|+||+||.+++||.++ .|++ ..+......|+.+++.++|+
T Consensus 155 ~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~lG~ 232 (370)
T cd01159 155 AFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAVSLGA 232 (370)
T ss_pred EEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHHHHHHHHH
Confidence 9999997 99999999999999999999999999999999998542 3422 23345667899999999999
Q ss_pred HHHHHHHHHHHHhhhccc---CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-------CchHHHHHHHHHH
Q psy2177 331 MRSVTKKAVDHATQRVQF---GRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGS-------QDYHLEAAISKVF 400 (677)
Q Consensus 331 a~~al~~a~~~a~~R~qf---g~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~-------~~~~~~~a~aK~~ 400 (677)
++++++.+++|+++|.+| |+||+++|.+|++|++|.+.+++++++++.+++.+|.+. .+.....+++|.+
T Consensus 233 a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~aK~~ 312 (370)
T cd01159 233 AEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERARIRRDAAY 312 (370)
T ss_pred HHHHHHHHHHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999997 788999999999999999999999999999999887631 1224567899999
Q ss_pred HHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhh
Q psy2177 401 ASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKML 480 (677)
Q Consensus 401 ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~ 480 (677)
+++.+.++++.++|++||.||.+ + ++++|+||| ++
T Consensus 313 ~~e~~~~~~~~a~~~~Gg~g~~~-------------~-------------------------~~l~r~~Rd-----~~-- 347 (370)
T cd01159 313 AAKLSAEAVDRLFHAAGGSALYT-------------A-------------------------SPLQRIWRD-----IH-- 347 (370)
T ss_pred HHHHHHHHHHHHHHhcCchhccc-------------C-------------------------CcHHHHHHH-----HH--
Confidence 99999999999999999999999 8 999999999 99
Q ss_pred cCCccccccCch-HHhhhc
Q psy2177 481 VDPVTKFFDEVN-DPLKND 498 (677)
Q Consensus 481 ~~pi~~i~eGtn-~i~~~~ 498 (677)
...+++|++ ++++..
T Consensus 348 ---~~~~~~~~~~~~~~~~ 363 (370)
T cd01159 348 ---AAAQHAALNPETAAEA 363 (370)
T ss_pred ---HHhhhhccCcchHHHH
Confidence 999999999 999988
No 39
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1.4e-46 Score=400.75 Aligned_cols=321 Identities=37% Similarity=0.536 Sum_probs=287.3
Q ss_pred HHHHHHHHHHHHhhCCCcccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHHhh
Q psy2177 82 KMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQ 161 (677)
Q Consensus 82 ~~l~~~~~~f~~~~~~p~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~h~ 161 (677)
+++.+.+++|+.+...+... .....+...|+.+.++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~---------------------------------------- 42 (327)
T cd00567 4 RELRDSAREFAAEELEPYAR-ERRETPEEPWELLAELGLL---------------------------------------- 42 (327)
T ss_pred HHHHHHHHHHHHHhccccHH-hHHhhCCCCHHHHHHHHHH----------------------------------------
Confidence 57888999999987766433 1222344556666777777
Q ss_pred hhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeecCccccCEEEEE
Q psy2177 162 SIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVF 241 (677)
Q Consensus 162 ~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isna~~Ad~~lV~ 241 (677)
++..+|..+|+++||++||+.+.+|++++++++|||.+|||+..+.|++++++ ++|+|||+|+|+|+++.||+++|+
T Consensus 43 -~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~--~g~~l~G~k~~~s~~~~ad~~lv~ 119 (327)
T cd00567 43 -LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDG--DGYVLNGRKIFISNGGDADLFIVL 119 (327)
T ss_pred -hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeC--CEEEEEEEEEEecCCccCCEEEEE
Confidence 23467788999999999999999999999999999999999999999999854 459999999999999999999999
Q ss_pred EEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHHHHHHHHHHHHH
Q psy2177 242 AQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRF 321 (677)
Q Consensus 242 Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~Rl 321 (677)
|+++..+ ....++.+|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.++.|+......+...|+
T Consensus 120 a~~~~~~----~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~ 195 (327)
T cd00567 120 ARTDEEG----PGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRL 195 (327)
T ss_pred EEeCCCC----CCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHH
Confidence 9986321 112468999999999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHH
Q psy2177 322 GMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFA 401 (677)
Q Consensus 322 ~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~~~~~a~aK~~a 401 (677)
..++.++|+++++++.+++|+++|.|||+|+.++|.+|++|++|.+.+++++++++.++..++.+..+.....+++|.++
T Consensus 196 ~~aa~~~G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~ 275 (327)
T cd00567 196 LLAAVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFA 275 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886544578889999999
Q ss_pred HHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhc
Q psy2177 402 SEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLV 481 (677)
Q Consensus 402 se~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~ 481 (677)
++.+.++++.+++++||.||.. + +|++|+||| ++
T Consensus 276 ~~~a~~~~~~~~~~~Gg~g~~~-------------~-------------------------~~l~r~~rd-----~~--- 309 (327)
T cd00567 276 TEAAREVADLAMQIHGGRGYSR-------------E-------------------------YPVERYLRD-----AR--- 309 (327)
T ss_pred HHHHHHHHHHHHHHccCccccC-------------C-------------------------CHHHHHHHh-----hh---
Confidence 9999999999999999999999 8 999999999 99
Q ss_pred CCccccccCchHHhhhc
Q psy2177 482 DPVTKFFDEVNDPLKND 498 (677)
Q Consensus 482 ~pi~~i~eGtn~i~~~~ 498 (677)
...+++|++++++..
T Consensus 310 --~~~~~~G~~~~~~~~ 324 (327)
T cd00567 310 --AARIAEGTAEIQRLI 324 (327)
T ss_pred --cceeecCHHHHHHHH
Confidence 999999999998875
No 40
>KOG1469|consensus
Probab=100.00 E-value=3.7e-43 Score=350.28 Aligned_cols=332 Identities=26% Similarity=0.378 Sum_probs=291.3
Q ss_pred HHHHcCCCCCCCcccC--CCCCCCHHHHHHHHHHHhccCchhHHH-HHHhhhhHHHHHHhcCChhhhhccccccccCCcc
Q psy2177 114 GLWDLGAFSLQVPQDL--GGLGLTNTQYARMVEIVGGNDLAVGIV-LGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190 (677)
Q Consensus 114 ~l~~~Gl~~l~vP~ey--GG~Gls~~~~~~v~e~la~~d~s~~~~-l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~ 190 (677)
..+..|++.+.+|..- -|.|+++.+|+.+.|.+++.-.+.-++ ..++..-....|..||++|||.+||-+|..|++.
T Consensus 35 ~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~ir 114 (392)
T KOG1469|consen 35 MAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIR 114 (392)
T ss_pred HHHhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCce
Confidence 3456799999999753 368999999999999998753322111 1223332345678899999999999999999999
Q ss_pred ccccccCCC-CCCCCCCCceEEEEcCCCCEEEEEEEEEeecCccc--cCEEEEEEEcCCCCCCCCcccCeEEEEEEecCC
Q psy2177 191 AAFCLTEPA-SGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGF--AEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSF 267 (677)
Q Consensus 191 ~a~alTEp~-~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isna~~--Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~ 267 (677)
+|||||||+ +.||+.++++..++ +|+.|+|||+|||+||+.+ +.+.+++.+|+.. .-+.+..-|+.+||+++
T Consensus 115 ScFaMTEP~VASSDATNIe~SI~r--~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~---~~~rhkQqSmiLVpM~T 189 (392)
T KOG1469|consen 115 SCFAMTEPDVASSDATNIECSIRR--DGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNT---SASRHKQQSMILVPMNT 189 (392)
T ss_pred eeEeecCCcccccccccceEEEEE--cCCEEEEecceeeecCCCCCceEEEEEecccCCC---ccchhhcccEEEEecCC
Confidence 999999999 78999999999988 7778999999999999874 7789999998643 23345678999999999
Q ss_pred CCeeeCCCCCcCCCCCCC--ceEEEEcceecccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2177 268 GGVTSGPPEKKMGIKASN--TAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQR 345 (677)
Q Consensus 268 ~GV~v~~~~~~~G~rg~~--t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R 345 (677)
|||++.++-...|....+ ..+|+|+||+||..|+|-++|+||.++...|..||++.++-.+|.+.++++...+.+..|
T Consensus 190 pGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sR 269 (392)
T KOG1469|consen 190 PGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERALSR 269 (392)
T ss_pred CCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999998888886543 479999999999999998899999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc
Q psy2177 346 VQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDN-GSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLG 424 (677)
Q Consensus 346 ~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~-~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g 424 (677)
..||++|..+..+.+.||....+++-+|.++..++..+|. +......+.+|.|+.+..++.++.+.++|.+||.|...
T Consensus 270 iaFgk~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~- 348 (392)
T KOG1469|consen 270 IAFGKKLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSS- 348 (392)
T ss_pred HHhcchhhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCC-
Confidence 9999999999999999999999999999999999999997 55566788999999999999999999999999999999
Q ss_pred hhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 425 RLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
+ +|+.++|-- +| +.+|.+|..++.-.-
T Consensus 349 ------------~-------------------------~~la~l~~~-----~r-----~lriadgPd~vhL~a 375 (392)
T KOG1469|consen 349 ------------D-------------------------TPLANLYAI-----AR-----VLRIADGPDEVHLSA 375 (392)
T ss_pred ------------C-------------------------ceeeEEEEE-----ee-----eEEeccCCCccchhh
Confidence 7 999999998 99 999999999887655
No 41
>KOG0135|consensus
Probab=100.00 E-value=2.4e-34 Score=310.36 Aligned_cols=450 Identities=20% Similarity=0.230 Sum_probs=334.3
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcC
Q psy2177 136 NTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSP 215 (677)
Q Consensus 136 ~~~~~~v~e~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~ 215 (677)
...+..+.|.++.+|.|++.-+++|..+....+..+||+..++ |+.+.-.-+.++||||||-++||+...++|+|+.+|
T Consensus 104 ~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP 182 (661)
T KOG0135|consen 104 ELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDP 182 (661)
T ss_pred HHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeecC
Confidence 3467888999999999999999999888778899999999998 999999999999999999999999999999999998
Q ss_pred CCCEEEEEE-----EEEeecCcc-ccCEEEEEEEcCCCCCCCCcccCeEEEEEEecC-------CCCeeeCCCCCcCCCC
Q psy2177 216 DGKHYILNG-----SKIWISNGG-FAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERS-------FGGVTSGPPEKKMGIK 282 (677)
Q Consensus 216 dG~~y~LnG-----~K~~isna~-~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~-------~~GV~v~~~~~~~G~r 282 (677)
..++|+||- .|+||.|++ .|.+.+|+|+.... |. ..|+..||||-. .|||+|++..+|.|++
T Consensus 183 ~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~----g~-n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~Gln 257 (661)
T KOG0135|consen 183 TTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVP----GQ-NHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLN 257 (661)
T ss_pred CCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeec----Cc-cCceeeEEEEeecccccCCCCCceecccccccccc
Confidence 888899997 899999988 69999999998653 22 268999999842 3899999999999999
Q ss_pred CCCceEEEEcceecccccccCCC----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2177 283 ASNTAEVYYEDVKVPVENVLGGV----------------GNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRV 346 (677)
Q Consensus 283 g~~t~~v~fddV~VP~~~lLG~~----------------g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~ 346 (677)
|.+++.+.|+||+||.+|+|... ++-+-..+..|..||++++..++|.++-++.+|++|+..|+
T Consensus 258 GVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRR 337 (661)
T KOG0135|consen 258 GVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRR 337 (661)
T ss_pred cccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHh
Confidence 99999999999999999998542 23455677889999999999999999999999999999999
Q ss_pred ccCC-------CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC---------CCCchHHHHHHHHHHHHHHHHHHHH
Q psy2177 347 QFGR-------RIDSFGTIQEKLARMALLHYVTESLAYMISGNMDN---------GSQDYHLEAAISKVFASEAAWYVTD 410 (677)
Q Consensus 347 qfg~-------pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~---------~~~~~~~~~a~aK~~ase~a~~v~~ 410 (677)
|||. ||.++|..|.+|-.+.+.+|+.......+....++ ...+++..++-.|.++|....++.+
T Consensus 338 QFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n~keiHALsSg~K~~~TW~~~~~Lq 417 (661)
T KOG0135|consen 338 QFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVNSKEIHALSSGLKPVATWHNMRALQ 417 (661)
T ss_pred hhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHhccchhhhHhhHHHHH
Confidence 9984 58899999999999999999988776665544432 1356788899999999999999999
Q ss_pred HHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCccccccC
Q psy2177 411 EAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDE 490 (677)
Q Consensus 411 ~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eG 490 (677)
+|.+.+||+||+. + +.+..+--| -- ++.+|||
T Consensus 418 ecREAcGGhGYl~-------------~-------------------------nRlg~Lr~D-----~D-----~~~TfEG 449 (661)
T KOG0135|consen 418 ECREACGGHGYLQ-------------E-------------------------NRLGQLRDD-----HD-----PFQTFEG 449 (661)
T ss_pred HHHHHhccchHHH-------------H-------------------------HHhcccccC-----CC-----ccceeec
Confidence 9999999999999 7 667777666 44 8999999
Q ss_pred chHHhhhccCCCcchhHHHHHHHHhhhHHHHHHHhc-CCCCchhHHHHHHHHHHHHHhcCCCCCCCccc-cCcchHHHHH
Q psy2177 491 VNDPLKNDSLETVEPNTLEGIQYAGGHLRELQKAFK-NPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHV-VHANLAESGV 568 (677)
Q Consensus 491 tn~i~~~~~~~~~~~ia~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~l~~~~~ 568 (677)
.|.|+-.. ++.. .|.++.+..+ +|.. +.....+... .. .+.+... ....|. ..+
T Consensus 450 DNnVLlQq-------vsn~-------LL~~y~~~~~e~p~~-----~~~~ln~~~s---~~-~~~~~s~~~~d~l~-~~~ 505 (661)
T KOG0135|consen 450 DNNVLLQQ-------VSNA-------LLAQYVSQKKETPLS-----FVGFLNEYPS---SP-DPVLASQLVSDTLR-SSQ 505 (661)
T ss_pred CceeHHHH-------HHHH-------HHHHHHHhhccCCch-----HHHHHhhccc---cC-Cccccccccccchh-HHH
Confidence 99998776 4432 2334433322 2221 1111111111 11 1111101 111111 111
Q ss_pred HH--H-HHH-HHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q psy2177 569 LC--S-KSV-VLFGEAVESLLLKYG---KGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWC 641 (677)
Q Consensus 569 ~~--~-~~~-~~~~~~~~~~l~~~g---~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~ 641 (677)
.. . +.. .++..++......+. ..-..+-.++...++-...-|+--.++.|--....+ .+.....-.|-.++-
T Consensus 506 f~~~~~~l~~~lLl~t~a~~~~~l~~g~~~fea~n~~q~h~~~~La~a~~E~~il~~~l~h~~k-~~~~s~k~vL~l~~d 584 (661)
T KOG0135|consen 506 FQLCYFWLRCHLLLETVASRERQLQSGLSSFEARNKCQVHQLRELALAFTEHTILQRFLDHVHK-LPDPSVKAVLGLVRD 584 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHH
Confidence 11 1 111 123333333333333 233345555555555566677777777776666555 666666666666666
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcc
Q psy2177 642 YEAAERVSQNLGALNSGKKLDSY 664 (677)
Q Consensus 642 ~~~~~~~~~~~~~l~~~~~~~~~ 664 (677)
..|...++....-+..+.+...+
T Consensus 585 lyal~lLek~~~ll~~~gy~s~~ 607 (661)
T KOG0135|consen 585 LYALWLLEKHPALLYITGYVSGE 607 (661)
T ss_pred HHHHHHHHHhHHHHhhccccccc
Confidence 77777777777777655555544
No 42
>KOG0136|consensus
Probab=99.95 E-value=8e-26 Score=249.93 Aligned_cols=299 Identities=21% Similarity=0.204 Sum_probs=244.6
Q ss_pred HHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEE-----EEEEe
Q psy2177 154 GIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILN-----GSKIW 228 (677)
Q Consensus 154 ~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~Ln-----G~K~~ 228 (677)
+..+..|..+....|...||+||.++||++....++++|+|.||-++||.+..++|+|+.++..+.|+|| ..|||
T Consensus 108 ~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWW 187 (670)
T KOG0136|consen 108 GHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWW 187 (670)
T ss_pred CchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceeccc
Confidence 4466778877778899999999999999999999999999999999999999999999999988899987 59999
Q ss_pred ecCcc-ccCEEEEEEEcCCCCCCCCcccCeEEEEEEecC-------CCCeeeCCCCCcCCCCCCCceEEEEcceeccccc
Q psy2177 229 ISNGG-FAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERS-------FGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVEN 300 (677)
Q Consensus 229 isna~-~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~-------~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~ 300 (677)
..+.+ .|++.+|.|++-.+ | +..|+..|+||.. .|||++++...|||..|.+++-+-||||+||.+|
T Consensus 188 PGgLG~ssnhAvV~AqL~~~----g-k~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~n 262 (670)
T KOG0136|consen 188 PGGLGKSSNHAVVVAQLITK----G-KCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTN 262 (670)
T ss_pred CCccccccchheeeeeeeec----c-cccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHh
Confidence 98776 58899999998653 2 2368999999953 2899999999999999999999999999999999
Q ss_pred ccCC------CcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-------CCCCcHHHHHHH
Q psy2177 301 VLGG------VGNGF-----KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGR-------RIDSFGTIQEKL 362 (677)
Q Consensus 301 lLG~------~g~G~-----~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~-------pi~~~~~vq~~L 362 (677)
+|-. .|... +.....+-..|..+..-..=....|..+|++|+..|+|+.. .|.+|+..|.+|
T Consensus 263 mLmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rl 342 (670)
T KOG0136|consen 263 MLMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRL 342 (670)
T ss_pred hhhhhheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHH
Confidence 8843 12111 11112222345444444444555678899999999999852 389999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-------hhhCC----CCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhH
Q psy2177 363 ARMALLHYVTESLAYMISG-------NMDNG----SQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASA 431 (677)
Q Consensus 363 a~m~~~~~aa~al~~~~a~-------~~d~~----~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~ 431 (677)
=...+..||-+.....+.. .++.+ -++.+.+++-.|+++|..+-.-+++|.+.|||+||+.
T Consensus 343 FP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~-------- 414 (670)
T KOG0136|consen 343 FPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQ-------- 414 (670)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchh--------
Confidence 9988888887665544433 33333 3567899999999999999999999999999999999
Q ss_pred HHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCccccccCchHHhhhccCCCcchhHHHHH
Q psy2177 432 AVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGI 511 (677)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~~~~~~~~ia~~~l 511 (677)
. +.+..+|-+ +- ...+|||.|.||-+. +|+--+
T Consensus 415 -----~-------------------------Sglp~iY~~-----~v-----~~CTYEGEN~VmlLQ-------~ARfLm 447 (670)
T KOG0136|consen 415 -----A-------------------------SGLPEIYGV-----AV-----GACTYEGENTVLLLQ-------VARFLV 447 (670)
T ss_pred -----h-------------------------cCCccceee-----ee-----eeeeeeccceeehHH-------HHHHHH
Confidence 7 889999998 77 899999999999988 776544
Q ss_pred H
Q psy2177 512 Q 512 (677)
Q Consensus 512 ~ 512 (677)
+
T Consensus 448 K 448 (670)
T KOG0136|consen 448 K 448 (670)
T ss_pred H
Confidence 3
No 43
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.92 E-value=2.3e-24 Score=241.33 Aligned_cols=235 Identities=19% Similarity=0.186 Sum_probs=196.6
Q ss_pred hhccccccccCCccccccccCCCCCCCC-----CCCce--EEEEcCCCCEEEEEEEEEeecCccccCEEEEEEEcCCCCC
Q psy2177 177 KAKYLPRVSTGKEFAAFCLTEPASGSDA-----GSIKT--RAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDE 249 (677)
Q Consensus 177 k~~yLp~l~~Ge~~~a~alTEp~~GSD~-----~~~~T--~A~~~~dG~~y~LnG~K~~isna~~Ad~~lV~Art~~~d~ 249 (677)
-.+|+..+...++..+.++|.|..--.. ..... ..+ ..+|+||+|||.|.|+|++ .||.++|++++...
T Consensus 129 ~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vv-e~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~-- 204 (477)
T TIGR02309 129 VRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVV-EQTDKGVIVRGARMTATFP-IADEILIFPSTVLK-- 204 (477)
T ss_pred HHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEE-EEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCC--
Confidence 4578899999999999999999753221 11112 222 2356669999999999996 99999999998642
Q ss_pred CCCccc-CeEEEEEEecCCCCeeeCCCCCcCCCCCC-----------CceEEEEcceecccccc--cCCC---cchHHHH
Q psy2177 250 KTGKVV-DKVTAFIVERSFGGVTSGPPEKKMGIKAS-----------NTAEVYYEDVKVPVENV--LGGV---GNGFKVA 312 (677)
Q Consensus 250 ~~g~~~-~gis~FlVp~~~~GV~v~~~~~~~G~rg~-----------~t~~v~fddV~VP~~~l--LG~~---g~G~~~~ 312 (677)
.+.++ +-.++|+||.++|||++.....++|.++. .++.|.||||+||.+++ +|++ ++||...
T Consensus 205 -~~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~ 283 (477)
T TIGR02309 205 -AGAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAAT 283 (477)
T ss_pred -CccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHH
Confidence 12111 13799999999999999999999999887 77999999999999999 8998 8888666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC----C
Q psy2177 313 MQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGS----Q 388 (677)
Q Consensus 313 ~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~----~ 388 (677)
+. +...+..++|....+++.++.|+.. .+||.++.++|.||++|++|.+.+++++++++.++...+.+. .
T Consensus 284 ~~-----~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~~~G~~~ 357 (477)
T TIGR02309 284 GA-----VNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKENAYGLMT 357 (477)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCccc
Confidence 43 2556888999999999999999999 999999999999999999999999999999999999888742 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Q psy2177 389 DYHLEAAISKVFASEAAWYVTDEAIQILGGINLLL 423 (677)
Q Consensus 389 ~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~ 423 (677)
+...+++++|+++++...++. +++|++||.|++.
T Consensus 358 P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~~ 391 (477)
T TIGR02309 358 PDRGALDAARNLYPRLYPRLR-EILEQLGASGLIT 391 (477)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe
Confidence 346889999999999999995 9999999999998
No 44
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.88 E-value=8e-22 Score=186.51 Aligned_cols=144 Identities=31% Similarity=0.500 Sum_probs=140.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy2177 306 GNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDN 385 (677)
Q Consensus 306 g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~ 385 (677)
|+||++++..++.+|+.+++.++|.++.+++.+.+|+++|.+||+|+.++|.++++|+++.++++++++++++++..+|.
T Consensus 1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~ 80 (150)
T PF00441_consen 1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDA 80 (150)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhcccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCCh
Q psy2177 386 GSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPY 465 (677)
Q Consensus 386 ~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 465 (677)
+..+ ..+++++|+++++.++.+++++++++||.||.. + +|+
T Consensus 81 ~~~~-~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~-------------~-------------------------~~l 121 (150)
T PF00441_consen 81 GQND-PVEAAIAKYFATELAQDIAEEAMQLLGGRGLTE-------------D-------------------------NPL 121 (150)
T ss_dssp TSST-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBT-------------T-------------------------SSH
T ss_pred cccc-ccccchhhhhcccccccchhhhhhhhhhhhhcc-------------c-------------------------CHH
Confidence 8665 789999999999999999999999999999999 8 999
Q ss_pred hhhhhhhhhhhhhhhcCCccccccCchHHhhhc
Q psy2177 466 PEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKND 498 (677)
Q Consensus 466 er~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~ 498 (677)
++++|| ++ +..|+||+++|++..
T Consensus 122 ~~~~rd-----a~-----~~~i~~G~~ev~~~~ 144 (150)
T PF00441_consen 122 ERLYRD-----AR-----AFTIYGGTNEVQRNQ 144 (150)
T ss_dssp HHHHHH-----HH-----HGGTSTSTHHHHHHH
T ss_pred HHHHhh-----cc-----eeeeccCCHHHHHHH
Confidence 999999 99 999999999999999
No 45
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.67 E-value=4.8e-17 Score=146.99 Aligned_cols=107 Identities=32% Similarity=0.518 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhhCCC--cccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHH
Q psy2177 82 KMLVDPVTKFFDEVNDP--LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGA 159 (677)
Q Consensus 82 ~~l~~~~~~f~~~~~~p--~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~ 159 (677)
+++++.+++|+++.+.| .+.|..+.+|+++|+.+++.||+++.+|++|||.|+++.+++.+++++++.|.++++.+++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~ 84 (113)
T PF02771_consen 5 QALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAFALGV 84 (113)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccchhhh
Confidence 68999999999988766 4556666999999999999999999999999999999999999999999999999998999
Q ss_pred hhhhHHHHHHhcCChhhhhccccccccCC
Q psy2177 160 HQSIGFKGILLVGNPEQKAKYLPRVSTGK 188 (677)
Q Consensus 160 h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge 188 (677)
|++++..+|..+|+++||++|||++++||
T Consensus 85 ~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 85 HQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 98888789999999999999999999996
No 46
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.44 E-value=1.3e-13 Score=108.51 Aligned_cols=51 Identities=47% Similarity=0.679 Sum_probs=44.8
Q ss_pred cccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeecCccccCEEEEEEEc
Q psy2177 192 AFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQT 244 (677)
Q Consensus 192 a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isna~~Ad~~lV~Art 244 (677)
|||+|||++|+|+.+++|+|+++++ +|+|||+|+||+|++.||+++|+||+
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~--~~~L~G~K~~v~~~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGD--GYVLNGEKRFVSNAPDADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETT--EEEEEEEEEEEETTTTESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeecccc--eEEEeeEEEEECCcCccCEEEEEEEE
Confidence 6899999999999999999999544 49999999999999999999999997
No 47
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.33 E-value=1.5e-10 Score=126.59 Aligned_cols=268 Identities=21% Similarity=0.214 Sum_probs=178.1
Q ss_pred hhccccccccCCccccccccCCCCCCCCCC-------CceEEE-EcCCCCEEEEEEEEEeecCccccCEEEEE-EEcCCC
Q psy2177 177 KAKYLPRVSTGKEFAAFCLTEPASGSDAGS-------IKTRAV-LSPDGKHYILNGSKIWISNGGFAEIMTVF-AQTPVK 247 (677)
Q Consensus 177 k~~yLp~l~~Ge~~~a~alTEp~~GSD~~~-------~~T~A~-~~~dG~~y~LnG~K~~isna~~Ad~~lV~-Art~~~ 247 (677)
-.+|+..++..++..+-|+|.|..--.-.. +-.+.+ ..+|| .+|+|.|..+||++.+|.++|+ .+.-.
T Consensus 133 ~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dG--IVVrGAK~~aT~~a~tdei~V~Pt~~~~- 209 (493)
T COG2368 133 AREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDG--IVVRGAKALATGSALTDEIFVLPTRSMQ- 209 (493)
T ss_pred HHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCc--eEEEChHHHhccccccceEEEeeccccC-
Confidence 457888899999988999999975332211 112222 23455 9999999999999999998888 44321
Q ss_pred CCCCCcccCeEEEEEEecCCCCeeeCCCC---CcCCC-----------CC-CCceEEEEcceeccccccc--CCCc--ch
Q psy2177 248 DEKTGKVVDKVTAFIVERSFGGVTSGPPE---KKMGI-----------KA-SNTAEVYYEDVKVPVENVL--GGVG--NG 308 (677)
Q Consensus 248 d~~~g~~~~gis~FlVp~~~~GV~v~~~~---~~~G~-----------rg-~~t~~v~fddV~VP~~~lL--G~~g--~G 308 (677)
++ ..+--.+|.+|.++|||++.-.. ..-|+ +. .+.+-|.||||+||.++++ ++.. ..
T Consensus 210 -~~---d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~~ 285 (493)
T COG2368 210 -ED---DKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAYA 285 (493)
T ss_pred -CC---CCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeeccHHHHHH
Confidence 11 12456789999999999864221 11111 11 1235599999999999986 5544 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC---
Q psy2177 309 FKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDN--- 385 (677)
Q Consensus 309 ~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~--- 385 (677)
+..........|...+.+-.+.+.-.+-.+..-++. .-+.+++.||++|++|.+-.+.+.++...++.....
T Consensus 286 ~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~-----~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~~ 360 (493)
T COG2368 286 WYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIAET-----NGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNPN 360 (493)
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHh-----hCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 444444555666666666666555555444433332 336789999999999999999999998887754433
Q ss_pred C-CCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCC
Q psy2177 386 G-SQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFP 464 (677)
Q Consensus 386 ~-~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (677)
| .-+....+...|.++...-.++.....++.||.-.+.+ + +.+ -.-+|.+.+--+|.+|..+ .+
T Consensus 361 G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~lP-----S-~~D-----~~n~e~~~~l~kYlrg~~~----~~ 425 (493)
T COG2368 361 GAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGIITLP-----S-AED-----LFNPEIRPYLDKYLRGSAN----VD 425 (493)
T ss_pred CceecCHHHHhhHHHhcccchHHHHHHHHHHhcCceeecC-----c-hhh-----hcCchhhHHHHHHHhccCC----CC
Confidence 1 12346778889999999999999988888887665551 1 111 1235667777778888433 55
Q ss_pred hhhhhhh
Q psy2177 465 YPEVLTE 471 (677)
Q Consensus 465 ler~~RD 471 (677)
.+..+|=
T Consensus 426 aeeR~k~ 432 (493)
T COG2368 426 AEERLKI 432 (493)
T ss_pred HHHHHHH
Confidence 5555443
No 48
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.29 E-value=2.2e-11 Score=114.11 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc--cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----CCC---CchH
Q psy2177 321 FGMAAALAGTMRSVTKKAVDHATQRVQ--FGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMD----NGS---QDYH 391 (677)
Q Consensus 321 l~~aa~~~G~a~~al~~a~~~a~~R~q--fg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d----~~~---~~~~ 391 (677)
+++++.++|+++.+++.++++++.|.. .+.++.+.|.+|.+|+++...+++++++++.++..++ .+. .+..
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 467899999999999999999999987 7889999999999999999999999999999998844 332 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Q psy2177 392 LEAAISKVFASEAAWYVTDEAIQILGGINLLL 423 (677)
Q Consensus 392 ~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~ 423 (677)
......|.++.+.+.++++.++++.||.++..
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~ 112 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALYR 112 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhhc
Confidence 66778899999999999999999999999999
No 49
>PF09317 DUF1974: Domain of unknown function (DUF1974); InterPro: IPR015396 This C-terminal domain is functionally uncharacterised and is predominantly found in various prokaryotic acyl-coenzyme a dehydrogenases. ; GO: 0003995 acyl-CoA dehydrogenase activity, 0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase, 0055114 oxidation-reduction process
Probab=99.26 E-value=3.1e-10 Score=118.62 Aligned_cols=147 Identities=17% Similarity=0.200 Sum_probs=127.1
Q ss_pred CcchhHHHHHHHHhh-----hHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCCCccccCcchHHHHHHHHHHHHH
Q psy2177 502 TVEPNTLEGIQYAGG-----HLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVL 576 (677)
Q Consensus 502 ~~~~ia~~~l~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 576 (677)
+|||..+..|+.+.. .+.++.+.+. +|.++.+.+..+.+...++.+...+ ....+.++.+.+++.+..+.
T Consensus 2 RCHPyvl~Em~A~~~~D~~~~l~~FD~al~---~Hig~~~~N~~Rs~~~glt~g~~~~--~P~~~~~~~Yyr~l~R~Sa~ 76 (284)
T PF09317_consen 2 RCHPYVLKEMEAAQNPDEEEALKAFDKALF---GHIGFVVSNAARSLWLGLTGGRFAS--APVDGETARYYRQLTRLSAA 76 (284)
T ss_pred CCChHHHHHHHHhhCCChhHHHHHHHHHHH---HHHHHHHHhHHHHHHHHhcccccCC--CCCCchhHHHHHHHHHHHHH
Confidence 799999999997653 3889999987 9999999999998877664442211 12467899999999999999
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2177 577 FGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALN 656 (677)
Q Consensus 577 ~~~~~~~~l~~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~ 656 (677)
|+..++..|...|++++.++++..||||+.++||.++|||.|.... | ..+.+..++++-|..+..++++.++++.
T Consensus 77 fAl~aD~am~~LGG~LKrkE~lSaRLgDvLS~LYl~sAvLKr~ed~---G--r~~~Dlplv~wa~~~~l~~~q~Al~~~~ 151 (284)
T PF09317_consen 77 FALLADVAMLVLGGKLKRKERLSARLGDVLSQLYLASAVLKRFEDE---G--RPEEDLPLVHWAMQDALYRIQEALDGIL 151 (284)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997732 4 4456789999999999999999999999
Q ss_pred cC
Q psy2177 657 SG 658 (677)
Q Consensus 657 ~~ 658 (677)
.|
T Consensus 152 ~N 153 (284)
T PF09317_consen 152 RN 153 (284)
T ss_pred Hh
Confidence 87
No 50
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.16 E-value=2.3e-09 Score=120.84 Aligned_cols=256 Identities=14% Similarity=0.134 Sum_probs=159.2
Q ss_pred hhccccccccCCccccccccCCCCCCCCC-----CCceEE-EEcCCCCEEEEEEEEEeecCccccCEEEE-EEEcCCCCC
Q psy2177 177 KAKYLPRVSTGKEFAAFCLTEPASGSDAG-----SIKTRA-VLSPDGKHYILNGSKIWISNGGFAEIMTV-FAQTPVKDE 249 (677)
Q Consensus 177 k~~yLp~l~~Ge~~~a~alTEp~~GSD~~-----~~~T~A-~~~~dG~~y~LnG~K~~isna~~Ad~~lV-~Art~~~d~ 249 (677)
-.+|+..+.+.++..+.++|.|..--... ..-... +.+++| .+|+|.|...|+++.+|.++| ..+.+..
T Consensus 138 ~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dG--IVVrGAK~~aT~a~~a~ei~V~~~~~~~~-- 213 (519)
T TIGR02310 138 ARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDG--IVVSGAKVVATNSALTHYNFIGFGSAQII-- 213 (519)
T ss_pred HHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCc--EEEeCHHHHhcccchhcceeeccCccccc--
Confidence 45788999999999999999997532211 111222 233444 999999999999999998887 4443211
Q ss_pred CCCcccCeEEEEEEecCCCCeeeCCCCC--------------cCCCC-CCCceEEEEcceeccccccc--CCCcch--HH
Q psy2177 250 KTGKVVDKVTAFIVERSFGGVTSGPPEK--------------KMGIK-ASNTAEVYYEDVKVPVENVL--GGVGNG--FK 310 (677)
Q Consensus 250 ~~g~~~~gis~FlVp~~~~GV~v~~~~~--------------~~G~r-g~~t~~v~fddV~VP~~~lL--G~~g~G--~~ 310 (677)
+..++--.+|.||.++|||++.-... ++.-+ +-..+-|.||||+||.|+|+ |.+... +.
T Consensus 214 --~~d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~ 291 (519)
T TIGR02310 214 --GDNDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWA 291 (519)
T ss_pred --CCCCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHH
Confidence 11123456899999999999752211 11111 12346899999999999987 542211 11
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC---
Q psy2177 311 VAMQILN-NGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNG--- 386 (677)
Q Consensus 311 ~~~~~l~-~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~--- 386 (677)
....... ..|-+. .+.++-+.-.+-.+..-+.. .-+.+++.||++|++|....+.++++...+...-...
T Consensus 292 ~~~~~~~~~~~q~~-~r~~~k~dfl~G~a~~~ae~-----~G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~~G 365 (519)
T TIGR02310 292 QYGGFARLFPMQAC-TRLAVKLDFITGLLHKALQC-----TGVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWKNG 365 (519)
T ss_pred HhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-----hCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCC
Confidence 1111111 112222 23444444444444333332 3367899999999999999999999888776544331
Q ss_pred -CCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHH--HHhhhhhHHHhhhhhcc
Q psy2177 387 -SQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQ--KAAKESQSFTMNMFRGQ 456 (677)
Q Consensus 387 -~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 456 (677)
-.+.......+|.+.++.-.++.+.+.++.||-=.... ++. -..++.+.+-.+|.+|.
T Consensus 366 ~~~P~~~~~~a~r~~~~~~y~r~~eil~~~~agGli~~p------------ss~~Df~npe~~~~l~kyl~g~ 426 (519)
T TIGR02310 366 AQLPSAQALQTYRVMAPMAYHTIKKIIEQTVTSGLIYLP------------SHIRDLNNPQIDQYLEKYVRGS 426 (519)
T ss_pred eEeeCHHHHHHHHHHhhhhhHHHHHHHHHHccCCeeecC------------CcHHHccCchhHHHHHHHhcCC
Confidence 11235667889999999999998887755554333330 111 12456777777888875
No 51
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.13 E-value=1.7e-05 Score=82.85 Aligned_cols=120 Identities=23% Similarity=0.334 Sum_probs=73.5
Q ss_pred hccccccccCCccccccccCCCCCCCCCC------CceEEEEcCCCCEEEEEEEEEeecCccccCEEEEEEEcCCCCCCC
Q psy2177 178 AKYLPRVSTGKEFAAFCLTEPASGSDAGS------IKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKT 251 (677)
Q Consensus 178 ~~yLp~l~~Ge~~~a~alTEp~~GSD~~~------~~T~A~~~~dG~~y~LnG~K~~isna~~Ad~~lV~Art~~~d~~~ 251 (677)
.+|+..+.+.++..+.++|.|...-.... +-.+.+. +..+|.+|+|.|...|+++.+|.++|+-......
T Consensus 126 ~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVe-e~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~--- 201 (264)
T PF11794_consen 126 RRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVE-ETDDGIVVRGAKMLATGAPYADEILVFPTRAMRP--- 201 (264)
T ss_dssp HHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEE-E-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTT---
T ss_pred HHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEE-EcCCCEEEeChhhhhcCCcccccEEEeeccCCCC---
Confidence 46888888999999999999984221111 1222222 1233499999999999999999999986543211
Q ss_pred CcccCeEEEEEEecCCCCeeeCCCCC-----------cCCCCCC-CceEEEEcceeccccccc
Q psy2177 252 GKVVDKVTAFIVERSFGGVTSGPPEK-----------KMGIKAS-NTAEVYYEDVKVPVENVL 302 (677)
Q Consensus 252 g~~~~gis~FlVp~~~~GV~v~~~~~-----------~~G~rg~-~t~~v~fddV~VP~~~lL 302 (677)
+ ..+--.+|.||.++||+++.-... .+.-+.- ..+-|.||||+||.++|+
T Consensus 202 ~-d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 202 G-DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp C-CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred C-CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 1 124567899999999998742211 2333322 236899999999999875
No 52
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=95.54 E-value=0.52 Score=47.80 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=68.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC---C-CCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccch
Q psy2177 350 RRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDN---G-SQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGR 425 (677)
Q Consensus 350 ~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~---~-~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~ 425 (677)
.-+.++|.||++|++|....+.+++++..+...... | -.+.......+|.+.++.-.++++...++.||.=.+.+
T Consensus 42 ~G~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~~P- 120 (205)
T PF03241_consen 42 NGIDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLITLP- 120 (205)
T ss_dssp TTGTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC---
T ss_pred hCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-
Confidence 346789999999999999999999999877654433 1 12336678899999999999999998888888777761
Q ss_pred hhhhhHHHHhHHHHHHhhhhhHHHhhhhhcc
Q psy2177 426 LASASAAVKAKEEQKAAKESQSFTMNMFRGQ 456 (677)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (677)
.+..-..|+.+.+...|++|+
T Consensus 121 ----------s~~Df~npe~~~~l~kYl~g~ 141 (205)
T PF03241_consen 121 ----------SEADFDNPEIGPYLDKYLQGA 141 (205)
T ss_dssp -----------HHHHH-TTTHHHHHHHT-BT
T ss_pred ----------CHHHhCCcchhHHHHHHhccc
Confidence 121122467777777888876
No 53
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=93.90 E-value=0.3 Score=45.67 Aligned_cols=83 Identities=24% Similarity=0.310 Sum_probs=70.4
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKL 667 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 667 (677)
+|+.+.+.+.+..+|+++..++++|-+.+.|+.+.+..+... ..+..++..||.+...++-+.+.++..+.....|...
T Consensus 43 ~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l 121 (150)
T PF00441_consen 43 FGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDAGQND-PVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPL 121 (150)
T ss_dssp TTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSST-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSH
T ss_pred ccCcccchhhhHHHHHhhccchhhhhcccccccccccccccc-ccccchhhhhcccccccchhhhhhhhhhhhhcccCHH
Confidence 467789999999999999999999999999999988877544 8899999999999999999999999887655555544
Q ss_pred HHHH
Q psy2177 668 GDIA 671 (677)
Q Consensus 668 ~~~~ 671 (677)
.++-
T Consensus 122 ~~~~ 125 (150)
T PF00441_consen 122 ERLY 125 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 54
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=91.98 E-value=3.9 Score=44.74 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=68.7
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKL 667 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 667 (677)
+|..+.+.|.+..+|+++.++++++.+.+.++.+.+..|.+.......++..||.+...++-..+-++..+.....|.-+
T Consensus 265 fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l 344 (375)
T cd01162 265 FGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLKDYPV 344 (375)
T ss_pred cCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChH
Confidence 58889999999999999999999999999999998887755555557789999999999999999999988655555433
Q ss_pred HH
Q psy2177 668 GD 669 (677)
Q Consensus 668 ~~ 669 (677)
.+
T Consensus 345 ~r 346 (375)
T cd01162 345 EQ 346 (375)
T ss_pred HH
Confidence 33
No 55
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=89.41 E-value=6.7 Score=43.62 Aligned_cols=86 Identities=16% Similarity=0.227 Sum_probs=70.4
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q psy2177 587 KYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLP-SASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYT 665 (677)
Q Consensus 587 ~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~-~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 665 (677)
.+|+.+.+.|.+..||+++.+.++++-+.+.++.+.+..+.. ....+..++..||.+...++-..+-++..+.....+.
T Consensus 295 ~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~ 374 (409)
T cd01161 295 QFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKAEYQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMREY 374 (409)
T ss_pred eCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCC
Confidence 357889999999999999999999999999999988877653 4566789999999999999999999998876665554
Q ss_pred HHHHHHH
Q psy2177 666 KLGDIAK 672 (677)
Q Consensus 666 ~~~~~~~ 672 (677)
.+.++-+
T Consensus 375 ~l~r~~R 381 (409)
T cd01161 375 GVERVLR 381 (409)
T ss_pred cHHHHHH
Confidence 4444433
No 56
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=88.97 E-value=9.2 Score=41.80 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=67.8
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q psy2177 587 KYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTK 666 (677)
Q Consensus 587 ~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 666 (677)
.+|+.+.+.|.+..+|+++.+.+.++.+.+.++.+.+..+. ....+..++..+|.++..++-..+-++..+...+.+..
T Consensus 268 ~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~-~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~ 346 (378)
T cd01157 268 TFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGR-RNTYYASIAKAFAADIANQLATDAVQIFGGNGFNSEYP 346 (378)
T ss_pred ccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCH
Confidence 36788999999999999999999999999999988776663 34566788999999999999999999988866555444
Q ss_pred HHHH
Q psy2177 667 LGDI 670 (677)
Q Consensus 667 ~~~~ 670 (677)
+.+.
T Consensus 347 l~r~ 350 (378)
T cd01157 347 VEKL 350 (378)
T ss_pred HHHH
Confidence 4333
No 57
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=88.16 E-value=11 Score=41.56 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=66.9
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q psy2177 587 KYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTK 666 (677)
Q Consensus 587 ~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 666 (677)
++|+.+.+.|.+..+|+++.+.+-++.+.+.+|.+.+..+.+ ...+..++..||.++..++-..+-++..+.....+.-
T Consensus 268 ~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~-~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 346 (380)
T PRK03354 268 QFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTI-TSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHR 346 (380)
T ss_pred ccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCh
Confidence 368899999999999999999999999999999887766543 4577899999999999999998888887755554433
Q ss_pred HH
Q psy2177 667 LG 668 (677)
Q Consensus 667 ~~ 668 (677)
+.
T Consensus 347 l~ 348 (380)
T PRK03354 347 IS 348 (380)
T ss_pred HH
Confidence 33
No 58
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=88.11 E-value=4.2 Score=47.02 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=65.1
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Q psy2177 348 FGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLL 423 (677)
Q Consensus 348 fg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~ 423 (677)
+|+.|.+.|.+..+|+++++.+|++-+.+-++...+..+.+....+..+++.||.+...++-..+-++... ++..
T Consensus 429 ~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~-~~~~ 503 (520)
T PTZ00457 429 SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV-GKTA 503 (520)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence 46889999999999999999999999999999888888766666777899999999999998888888887 5555
No 59
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=87.87 E-value=11 Score=40.06 Aligned_cols=86 Identities=23% Similarity=0.261 Sum_probs=71.3
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKL 667 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 667 (677)
+|..+...|.+..+|+++...++++-+.+.++.+.+..+.+....+..++..+|.+...++-..+-++..+.....+.-+
T Consensus 222 ~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l 301 (327)
T cd00567 222 FGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPV 301 (327)
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCHH
Confidence 56788899999999999999999999999999998887755466788899999999999999999999887666555555
Q ss_pred HHHHHH
Q psy2177 668 GDIAKN 673 (677)
Q Consensus 668 ~~~~~~ 673 (677)
.+.-+.
T Consensus 302 ~r~~rd 307 (327)
T cd00567 302 ERYLRD 307 (327)
T ss_pred HHHHHh
Confidence 544443
No 60
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=87.72 E-value=12 Score=40.96 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=68.7
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKL 667 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 667 (677)
+|+.+.+.|.+..+|+++.+.+.++-+.+.++.+.+..|.+. ..+..++..||.++..++-..+-++..+.....+ -+
T Consensus 266 fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~-~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~-~l 343 (372)
T TIGR03207 266 FGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPH-TSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG-DM 343 (372)
T ss_pred cCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-hH
Confidence 588899999999999999999999999999998887766543 4678899999999999999999999988666665 44
Q ss_pred HHHH
Q psy2177 668 GDIA 671 (677)
Q Consensus 668 ~~~~ 671 (677)
.++-
T Consensus 344 ~r~~ 347 (372)
T TIGR03207 344 EQRL 347 (372)
T ss_pred HHHH
Confidence 4443
No 61
>KOG0139|consensus
Probab=87.58 E-value=4.6 Score=43.81 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=70.5
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy2177 586 LKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSY 664 (677)
Q Consensus 586 ~~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~ 664 (677)
..+|+.+.+-|.+..+||++..++=+.-..+.||.|..+.|+|-- .|-.+|.+|..|...++..-+-++..|...+.|
T Consensus 300 ~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~-keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d 377 (398)
T KOG0139|consen 300 LQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFV-KEAAMAKLYASEVATKTTHQCIQWLGGVGYTKD 377 (398)
T ss_pred HHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHhhhhhhhHHHHHHHHHHhccccccc
Confidence 457999999999999999999999999999999999999999975 578999999999999999999998888655554
No 62
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=87.58 E-value=10 Score=41.65 Aligned_cols=82 Identities=11% Similarity=0.083 Sum_probs=67.9
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKL 667 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 667 (677)
+|+.+.+.|.+..+|+++.+.+.++-+.+.++.+.+..+.+ ...+..++..+|.++..++-..+-++..+.....+..+
T Consensus 274 ~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~-~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l 352 (386)
T cd01151 274 FGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKA-TPEQISLLKRNNCGKALEIARTAREMLGGNGISDEYHI 352 (386)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHH
Confidence 58889999999999999999999999999999988776643 45678999999999999999999998887555554444
Q ss_pred HHH
Q psy2177 668 GDI 670 (677)
Q Consensus 668 ~~~ 670 (677)
.+.
T Consensus 353 ~r~ 355 (386)
T cd01151 353 IRH 355 (386)
T ss_pred HHH
Confidence 443
No 63
>PLN02526 acyl-coenzyme A oxidase
Probab=87.40 E-value=9.8 Score=42.43 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=68.0
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKL 667 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 667 (677)
+|+.+...|.+..+|+++.+.+.++-+.+.++.+.+..+.+ ...+..++..||.+...++-..+-++..+.....+..+
T Consensus 290 fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~-~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l 368 (412)
T PLN02526 290 FGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESGKM-TPGHASLGKAWITKKARETVALGRELLGGNGILADFLV 368 (412)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcCHH
Confidence 68899999999999999999999999999999888776653 45678899999999999999999999888655555443
Q ss_pred HH
Q psy2177 668 GD 669 (677)
Q Consensus 668 ~~ 669 (677)
.+
T Consensus 369 ~r 370 (412)
T PLN02526 369 AK 370 (412)
T ss_pred HH
Confidence 33
No 64
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=87.09 E-value=15 Score=40.43 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=66.6
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKL 667 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 667 (677)
+|+.+.+.|.+..+|+++.+.++++.+.+.+|...+..|.+ ...+..++..||.+...++-..+-++..+.....|.-+
T Consensus 270 ~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~-~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~~l 348 (381)
T PRK12341 270 FGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQS-LRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARV 348 (381)
T ss_pred CCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHH
Confidence 58889999999999999999999999999999887777754 34678899999999999999888888877555444333
Q ss_pred HH
Q psy2177 668 GD 669 (677)
Q Consensus 668 ~~ 669 (677)
.+
T Consensus 349 ~r 350 (381)
T PRK12341 349 SR 350 (381)
T ss_pred HH
Confidence 33
No 65
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=86.94 E-value=0.24 Score=45.82 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=28.4
Q ss_pred HHHHhhhhHHHHHHhcCChhhhhccccccccCCcc
Q psy2177 156 VLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190 (677)
Q Consensus 156 ~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~ 190 (677)
.+.+|.++..+.|...||+||+++|||+..+.++|
T Consensus 91 p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 91 PLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred hhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 44588888889999999999999999998877653
No 66
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=86.80 E-value=10 Score=41.85 Aligned_cols=85 Identities=16% Similarity=0.053 Sum_probs=68.1
Q ss_pred HHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2177 580 AVESLLLK--YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNL-PSASHEQLLAELWCYEAAERVSQNLGALN 656 (677)
Q Consensus 580 ~~~~~l~~--~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~-~~~~~e~~la~~~~~~~~~~~~~~~~~l~ 656 (677)
+++.+-.| +|+.|..-|.+..+|+|+.+.+.++-+.+.+|......+. .....+..+|..+|.++..++-...-++.
T Consensus 258 a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a~aK~~a~e~a~~va~~aiqi~ 337 (378)
T TIGR03203 258 TVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIAAAKVQIGKSLKFVGQQSIQLH 337 (378)
T ss_pred HHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444433 5889999999999999999999999999999987665432 23456889999999999999999999999
Q ss_pred cCCCCCcc
Q psy2177 657 SGKKLDSY 664 (677)
Q Consensus 657 ~~~~~~~~ 664 (677)
.+...+.+
T Consensus 338 Gg~G~t~e 345 (378)
T TIGR03203 338 GGIGMTME 345 (378)
T ss_pred cceeeccc
Confidence 88655544
No 67
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=84.81 E-value=19 Score=39.80 Aligned_cols=85 Identities=11% Similarity=0.158 Sum_probs=69.0
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q psy2177 587 KYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLP-SASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYT 665 (677)
Q Consensus 587 ~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~-~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 665 (677)
.+|+.+.+.|.+..+|+++.+.+.++-+.+.++.+.+..+.+ ....+..++..||.+...++-..+-++..+.....+.
T Consensus 283 ~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~ 362 (394)
T cd01155 283 AFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTVGNKAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDT 362 (394)
T ss_pred cCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCC
Confidence 357889999999999999999999999999999988776433 3457889999999999999999999998875555544
Q ss_pred HHHHHH
Q psy2177 666 KLGDIA 671 (677)
Q Consensus 666 ~~~~~~ 671 (677)
-+.++-
T Consensus 363 ~l~r~~ 368 (394)
T cd01155 363 PLANMY 368 (394)
T ss_pred HHHHHH
Confidence 444433
No 68
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=84.72 E-value=20 Score=39.90 Aligned_cols=82 Identities=12% Similarity=0.121 Sum_probs=66.8
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKL 667 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 667 (677)
+|+.+.+.|.+..+|+++.+.++++-+.+.++.+.+..+. ....+..++..||.++..++-..+-++..+.....+..+
T Consensus 299 fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~-~~~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~G~~~~~~l 377 (410)
T PTZ00461 299 FGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGN-KNRLGSDAAKLFATPIAKKVADSAIQVMGGMGYSRDMPV 377 (410)
T ss_pred cCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHH
Confidence 5788999999999999999999999999999988776553 234567789999999999999999999888665555444
Q ss_pred HHH
Q psy2177 668 GDI 670 (677)
Q Consensus 668 ~~~ 670 (677)
.+.
T Consensus 378 ~r~ 380 (410)
T PTZ00461 378 ERL 380 (410)
T ss_pred HHH
Confidence 333
No 69
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=84.65 E-value=19 Score=39.91 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=65.8
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKL 667 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 667 (677)
+|+.+.+.|.+..+|+++.+.+.++-+.+.++.+.+..|.. ...+...+..+|.+...++-..+-++..+.....+.-+
T Consensus 294 ~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~-~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~~~l 372 (404)
T PLN02519 294 FGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKV-DRKDCAGVILCAAERATQVALQAIQCLGGNGYINEYPT 372 (404)
T ss_pred CCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCChH
Confidence 57789999999999999999999999999999988776643 45677888899999998888888888877555444333
Q ss_pred HHH
Q psy2177 668 GDI 670 (677)
Q Consensus 668 ~~~ 670 (677)
.++
T Consensus 373 ~r~ 375 (404)
T PLN02519 373 GRL 375 (404)
T ss_pred HHH
Confidence 333
No 70
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=84.45 E-value=22 Score=38.63 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=67.1
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKL 667 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 667 (677)
+|..+...|.+..+|+++...++++.+.+.++.+.+..+.. ...+..++..||.+...++-..+-++..+.....+.-.
T Consensus 265 ~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~-~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l 343 (372)
T cd01160 265 FGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRL-DVAEASMAKYWATELQNRVAYECVQLHGGWGYMREYPI 343 (372)
T ss_pred cCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHH
Confidence 47788999999999999999999999999999887766643 35678899999999999999999999887555544444
Q ss_pred HHH
Q psy2177 668 GDI 670 (677)
Q Consensus 668 ~~~ 670 (677)
.+.
T Consensus 344 ~r~ 346 (372)
T cd01160 344 ARA 346 (372)
T ss_pred HHH
Confidence 433
No 71
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=83.83 E-value=14 Score=44.84 Aligned_cols=76 Identities=16% Similarity=0.112 Sum_probs=66.3
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy2177 587 KYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDS 663 (677)
Q Consensus 587 ~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~ 663 (677)
.+|+.|.+-|.+..+|+++++++|++.++...+.+.+..|.+ ...+..+|..||.++..++-...-++..+.....
T Consensus 361 QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~G~~-~~~~aA~AK~~atE~a~~va~~AmQIhGG~G~~~ 436 (777)
T PRK09463 361 QFKLPIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLGEK-PSVLSAIAKYHLTERGRQVINDAMDIHGGKGICL 436 (777)
T ss_pred HcCCChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHhchhheeC
Confidence 478899999999999999999999999999998888877743 3578889999999999999999999988865554
No 72
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=83.26 E-value=31 Score=37.54 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=66.2
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKL 667 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 667 (677)
+|+.+.+.|.+..+|+++.+.+.++-+.+.++.+.+..|.. ...+...+..+|.+...++-..+-++..+.....+..+
T Consensus 268 ~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~-~~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l 346 (376)
T cd01156 268 FGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNM-DPKDAAGVILYAAEKATQVALDAIQILGGNGYINDYPT 346 (376)
T ss_pred cCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCHH
Confidence 57889999999999999999999999999999988877643 45677778889999998888888888877555444444
Q ss_pred HHHH
Q psy2177 668 GDIA 671 (677)
Q Consensus 668 ~~~~ 671 (677)
.++-
T Consensus 347 ~r~~ 350 (376)
T cd01156 347 GRLL 350 (376)
T ss_pred HHHH
Confidence 4433
No 73
>KOG0137|consensus
Probab=83.07 E-value=13 Score=42.88 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=65.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy2177 348 FGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418 (677)
Q Consensus 348 fg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG 418 (677)
+|+.|.+.+.+-++||+.+.++|++-+.+-++.+....+.+....|.+.++.||+|....+...+-++-++
T Consensus 533 ~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 533 HGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 58899999999999999999999999999999998888877778999999999999999999888888777
No 74
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=82.98 E-value=4.9 Score=44.15 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=66.7
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy2177 587 KYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSY 664 (677)
Q Consensus 587 ~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~ 664 (677)
++|+.+.+.|.+..+|+++.++++++.+.+.++.+.+..+. ....+..++..||.+...++-..+-++..+.....+
T Consensus 263 ~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~-~~~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~ 339 (380)
T cd01152 263 RDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGK-PPGAEASIAKLFGSELAQELAELALELLGTAALLRD 339 (380)
T ss_pred hcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 56888999999999999999999999999999998886664 355778999999999999999999999887655544
No 75
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=79.87 E-value=42 Score=36.43 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=65.7
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKL 667 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 667 (677)
+|..+.+.|.+..|++++...++++-+.+.++...+..+. ....+...+..++.+...++-..+-++..+.....+..+
T Consensus 265 ~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~-~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~l 343 (373)
T cd01158 265 FGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGE-PFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPV 343 (373)
T ss_pred cCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCChH
Confidence 4778899999999999999999999999999887776553 335678889999999999999888888877555444444
Q ss_pred HHHH
Q psy2177 668 GDIA 671 (677)
Q Consensus 668 ~~~~ 671 (677)
.++-
T Consensus 344 ~r~~ 347 (373)
T cd01158 344 ERYY 347 (373)
T ss_pred HHHH
Confidence 4433
No 76
>PLN02876 acyl-CoA dehydrogenase
Probab=79.62 E-value=30 Score=42.43 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=66.4
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNK-NLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTK 666 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~-~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 666 (677)
+|+.+.+.|.+..+|+++.+.+.++-+.+.+|.+.+.. +.+....+..+|..+|.++..++-..+-++..+...+.+.-
T Consensus 708 fg~~i~~~q~vq~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~ 787 (822)
T PLN02876 708 FGKLIAQHGSFLSDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTV 787 (822)
T ss_pred cCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcch
Confidence 58889999999999999999999999999999988766 32334567899999999999999998888887765555433
Q ss_pred H
Q psy2177 667 L 667 (677)
Q Consensus 667 ~ 667 (677)
+
T Consensus 788 l 788 (822)
T PLN02876 788 L 788 (822)
T ss_pred H
Confidence 3
No 77
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=77.25 E-value=30 Score=38.48 Aligned_cols=81 Identities=6% Similarity=-0.063 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-c------------hHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy2177 592 VVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPS-A------------SHEQLLAELWCYEAAERVSQNLGALNSG 658 (677)
Q Consensus 592 ~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~-~------------~~e~~la~~~~~~~~~~~~~~~~~l~~~ 658 (677)
+.+.|.+..+|+++.++++++.+.+.++.+.+..+... . ..+..++..||.+.+.++-..+-++..+
T Consensus 289 ~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg 368 (407)
T cd01153 289 IIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGG 368 (407)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67889999999999999999999999988877554211 1 1223478999999999999999999988
Q ss_pred CCCCcchHHHHHHH
Q psy2177 659 KKLDSYTKLGDIAK 672 (677)
Q Consensus 659 ~~~~~~~~~~~~~~ 672 (677)
.....+..+.++-+
T Consensus 369 ~g~~~~~~l~r~~R 382 (407)
T cd01153 369 SGYTREYPIEQYYR 382 (407)
T ss_pred ceecCCCcHHHHHH
Confidence 66665544444433
No 78
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=74.45 E-value=20 Score=39.10 Aligned_cols=82 Identities=21% Similarity=0.142 Sum_probs=64.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy2177 589 GKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPS-------ASHEQLLAELWCYEAAERVSQNLGALNSGKKL 661 (677)
Q Consensus 589 g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~-------~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~ 661 (677)
|+.+...|.+..+|+++.+.+.++.+.+.++.+.+..+.+. ...+..++..+|.+...++-..+-++..+...
T Consensus 254 g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~ 333 (370)
T cd01159 254 AVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERARIRRDAAYAAKLSAEAVDRLFHAAGGSAL 333 (370)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhc
Confidence 45588899999999999999999999999999988665321 12346778899999999999998888877655
Q ss_pred CcchHHHHH
Q psy2177 662 DSYTKLGDI 670 (677)
Q Consensus 662 ~~~~~~~~~ 670 (677)
..|.-+.++
T Consensus 334 ~~~~~l~r~ 342 (370)
T cd01159 334 YTASPLQRI 342 (370)
T ss_pred ccCCcHHHH
Confidence 555444443
No 79
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=71.06 E-value=84 Score=34.46 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=66.2
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q psy2177 587 KYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTK 666 (677)
Q Consensus 587 ~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 666 (677)
.+|+.+.+.|.+..+|+++.+++.++-+.+.|+...+..+... ..+..++..|..+....+-...-++..+.....|..
T Consensus 279 ~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~-~~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~e~~ 357 (393)
T COG1960 279 QFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDA-GAEAAMAKLFATEAALEVADEAVQVHGGYGYTEEYP 357 (393)
T ss_pred hcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCch
Confidence 4788899999999999999999999999999988887776522 268899999999999999999999988755555543
No 80
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=68.82 E-value=74 Score=35.56 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=60.4
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-c------hHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPS-A------SHEQLLAELWCYEAAERVSQNLGALNSGKK 660 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~-~------~~e~~la~~~~~~~~~~~~~~~~~l~~~~~ 660 (677)
+|+.+.+.|.+..+|+++..++.++-+.+.++.+.+..+... . ..+..++..||.+...++-..+-++..+..
T Consensus 302 fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~~~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G 381 (418)
T cd01154 302 FGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNG 381 (418)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcE
Confidence 578899999999999999999999999999998877653211 1 123455899999999999999999887754
Q ss_pred CCcc
Q psy2177 661 LDSY 664 (677)
Q Consensus 661 ~~~~ 664 (677)
...+
T Consensus 382 ~~~~ 385 (418)
T cd01154 382 YLEE 385 (418)
T ss_pred EcCC
Confidence 4333
No 81
>PF12806 Acyl-CoA_dh_C: Acetyl-CoA dehydrogenase C-terminal like
Probab=68.67 E-value=99 Score=28.62 Aligned_cols=99 Identities=12% Similarity=-0.012 Sum_probs=67.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c--CCCCchHHH
Q psy2177 560 HANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLN---K--NLPSASHEQ 634 (677)
Q Consensus 560 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~---~--~~~~~~~e~ 634 (677)
++.+...+..|.+.+..+..++..++.....+...-.-...++=++..++.....-+..|..+.. . +.+...-.+
T Consensus 18 ~~~l~~~~~~L~~a~~~l~~~t~~l~~~~~~~~~~~~a~A~~yL~~~G~v~~aw~wl~~A~~A~~~l~~~~d~~fy~~Ki 97 (130)
T PF12806_consen 18 DPELAALAAALQQALEALREATAWLLAQAAADPELAGAAAVDYLMLFGYVVGAWLWLRQALAAQKALAEGGDDAFYQGKI 97 (130)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Confidence 46788899999999999999999988887766433333344444444444433333333333322 2 122345567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q psy2177 635 LLAELWCYEAAERVSQNLGALNSG 658 (677)
Q Consensus 635 ~la~~~~~~~~~~~~~~~~~l~~~ 658 (677)
..|+.||..-.-++......+.++
T Consensus 98 ~~A~fy~~~~LP~~~~~~~~i~~g 121 (130)
T PF12806_consen 98 ATARFYFQRILPRADALAAAIEAG 121 (130)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHcc
Confidence 899999999999999999999997
No 82
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=68.51 E-value=68 Score=39.09 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=63.9
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy2177 587 KYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDS 663 (677)
Q Consensus 587 ~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~ 663 (677)
.+|+.|..-|.+..+|+++++++|.+.++-.-+.+++..|. ....+..+|..||.++..++-...-+|..+.....
T Consensus 360 QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a~D~G~-~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~ 435 (774)
T PRK13026 360 QFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTTGLDLGV-KPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQL 435 (774)
T ss_pred hcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeC
Confidence 46889999999999999999999988888777666666664 34688899999999999999999999998865544
No 83
>KOG0140|consensus
Probab=68.44 E-value=98 Score=33.47 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=70.4
Q ss_pred HHHHHHHH--HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2177 579 EAVESLLL--KYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALN 656 (677)
Q Consensus 579 ~~~~~~l~--~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~ 656 (677)
.+.+.++. .+|..|.+.|.+.--|||+++.++..--...+|.-.+..+-++ ..=-.+|.+|....+..+-.+.-++.
T Consensus 285 ~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~-sy~aSiAK~fA~D~an~~at~AvQif 363 (408)
T KOG0140|consen 285 EATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRN-SYYASIAKLFATDTANQAATNAVQIF 363 (408)
T ss_pred HHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-hHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 34445554 4689999999999999999999999999999988888888777 55568999999999999999988998
Q ss_pred cCCCCCcc
Q psy2177 657 SGKKLDSY 664 (677)
Q Consensus 657 ~~~~~~~~ 664 (677)
.|...|.|
T Consensus 364 GG~Gfn~e 371 (408)
T KOG0140|consen 364 GGNGFNKE 371 (408)
T ss_pred ccCCcccc
Confidence 88666554
No 84
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=66.51 E-value=82 Score=36.76 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=64.1
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy2177 588 YGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSA-----SHEQLLAELWCYEAAERVSQNLGALNSGKKLD 662 (677)
Q Consensus 588 ~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~-----~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~ 662 (677)
+|+.|.+.|.+..+|+|+.+++-++-+.+.|+.+.+..+.+.. .....++..||.+...++-...-++..+....
T Consensus 327 FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~ 406 (538)
T PRK11561 327 FGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYC 406 (538)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCC
Confidence 5899999999999999999999999999999999887764211 12233678888888888888888888876555
Q ss_pred cchHHHHH
Q psy2177 663 SYTKLGDI 670 (677)
Q Consensus 663 ~~~~~~~~ 670 (677)
.+..+.++
T Consensus 407 ee~~lerl 414 (538)
T PRK11561 407 EESELPRL 414 (538)
T ss_pred CCcHHHHH
Confidence 55444433
No 85
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=60.59 E-value=63 Score=35.79 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=55.5
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2177 587 KYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSL-NKNLPSASHEQLLAELWCYEAAERVSQNLGAL 655 (677)
Q Consensus 587 ~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~-~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l 655 (677)
.+|+.|...|.+..+|+|+.+++.++-+.+.++.... ..|......+..+|..+|.++..++-...-++
T Consensus 269 ~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~aa~aK~~~~~~~~~~~~~a~q~ 338 (395)
T TIGR03204 269 SGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKPNPASSVLKIKGSEIQQATTELLMEV 338 (395)
T ss_pred hcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999998886432 22222223578999999999998888888775
No 86
>PLN02312 acyl-CoA oxidase
Probab=59.82 E-value=1.3e+02 Score=36.17 Aligned_cols=77 Identities=16% Similarity=0.076 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q psy2177 592 VVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLP----SASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKL 667 (677)
Q Consensus 592 ~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~----~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 667 (677)
|.+-|.+..||+++...+|++.....++...+..+.+ ....+...+..||.+...++-+.+.+++.|.....+..+
T Consensus 378 I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~~~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l 457 (680)
T PLN02312 378 LLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKRTPESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRV 457 (680)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcH
Confidence 8899999999999999999998877777766655433 233466788999999999999999999988665554433
Q ss_pred H
Q psy2177 668 G 668 (677)
Q Consensus 668 ~ 668 (677)
.
T Consensus 458 ~ 458 (680)
T PLN02312 458 G 458 (680)
T ss_pred H
Confidence 3
No 87
>KOG0138|consensus
Probab=59.41 E-value=50 Score=35.44 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=59.4
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy2177 586 LKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSG 658 (677)
Q Consensus 586 ~~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~ 658 (677)
.++|..+...|.+...|+|+..++-.|.-...|-.|-+..|.-..++--.+-..-|..|.+-.++.=+-|-.|
T Consensus 316 kQFG~PLAanQL~Q~Kladmltei~lgl~~clrl~rLkd~g~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgN 388 (432)
T KOG0138|consen 316 KQFGRPLAANQLIQKKLADMLTEITLGLQACLRLGRLKDQGKATPEQISLLKRNNCGKALEIARQARDMLGGN 388 (432)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhHHHhhccchhHHHHHHHHHHHhcCC
Confidence 5678999999999999999999999999999999999999988887766666666777776665554444333
No 88
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=57.94 E-value=1.3e+02 Score=36.00 Aligned_cols=74 Identities=12% Similarity=0.004 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------C-----CchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy2177 591 GVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNL------P-----SASHEQLLAELWCYEAAERVSQNLGALNSGK 659 (677)
Q Consensus 591 ~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~------~-----~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~ 659 (677)
.|.+-|.+..||+++...+|++.....++...+..+. + ....+...+..||.+...++-+.+.+++.|.
T Consensus 314 pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~ 393 (646)
T PTZ00460 314 SVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGH 393 (646)
T ss_pred cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 7999999999999999999999988888877665321 1 1134567789999999999999999998886
Q ss_pred CCCcc
Q psy2177 660 KLDSY 664 (677)
Q Consensus 660 ~~~~~ 664 (677)
....+
T Consensus 394 Gy~~~ 398 (646)
T PTZ00460 394 GYAHY 398 (646)
T ss_pred ccccc
Confidence 55544
No 89
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=55.85 E-value=59 Score=35.51 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----------chHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy2177 591 GVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPS-----------ASHEQLLAELWCYEAAERVSQNLGALNSGK 659 (677)
Q Consensus 591 ~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~-----------~~~e~~la~~~~~~~~~~~~~~~~~l~~~~ 659 (677)
.+.+.|.+..+|+++.+.+.++-+.+.+|...+..+... ...+..++..||.+...++-..+-++..+.
T Consensus 257 ~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~ 336 (377)
T cd01163 257 SARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAKVVVTRLALDATSRLFEVGGAS 336 (377)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 356778899999999999999999999998877654211 134556788999999999999888888764
Q ss_pred CCCc
Q psy2177 660 KLDS 663 (677)
Q Consensus 660 ~~~~ 663 (677)
....
T Consensus 337 g~~~ 340 (377)
T cd01163 337 ATAR 340 (377)
T ss_pred hhcc
Confidence 4443
No 90
>PLN02636 acyl-coenzyme A oxidase
Probab=48.29 E-value=2e+02 Score=34.70 Aligned_cols=74 Identities=8% Similarity=0.050 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCC----CchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy2177 592 VVEEQFLLNRLAAAAFDTYTMA----VVLSRATRSLNKNLP----SASHEQLLAELWCYEAAERVSQNLGALNSGKKLDS 663 (677)
Q Consensus 592 ~~~~q~~l~rla~~~~~ly~~~----a~l~ra~~~~~~~~~----~~~~e~~la~~~~~~~~~~~~~~~~~l~~~~~~~~ 663 (677)
|.+.|.+..||+++...+|++- ..+.++.+....|.. ....+...+..||.+...++-+.+.+++.|.....
T Consensus 372 I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~ 451 (686)
T PLN02636 372 ILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAA 451 (686)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 8999999999999999999964 455555544433332 23446778999999999999999999998865554
Q ss_pred ch
Q psy2177 664 YT 665 (677)
Q Consensus 664 ~~ 665 (677)
+.
T Consensus 452 ~~ 453 (686)
T PLN02636 452 VN 453 (686)
T ss_pred cC
Confidence 43
No 91
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=47.02 E-value=1.7e+02 Score=33.66 Aligned_cols=72 Identities=17% Similarity=0.086 Sum_probs=59.9
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---C-CchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2177 586 LKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNL---P-SASHEQLLAELWCYEAAERVSQNLGALNS 657 (677)
Q Consensus 586 ~~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~---~-~~~~e~~la~~~~~~~~~~~~~~~~~l~~ 657 (677)
...+..+...|.+..+|+++.+++-++-+.+.+|......+. . ....+..++..|+.+...++...+..+-.
T Consensus 311 ~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~~~G~~~P~~~~as~aKl~~~e~~~rv~~alq~lGG 386 (477)
T TIGR02309 311 MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKENAYGLMTPDRGALDAARNLYPRLYPRLREILEQLGA 386 (477)
T ss_pred HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566788889999999999999999999999999998877743 1 23577899999999999999766666554
No 92
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=43.32 E-value=3.6e+02 Score=32.11 Aligned_cols=82 Identities=10% Similarity=-0.035 Sum_probs=62.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc------------hHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2177 589 GKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSA------------SHEQLLAELWCYEAAERVSQNLGALN 656 (677)
Q Consensus 589 g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~------------~~e~~la~~~~~~~~~~~~~~~~~l~ 656 (677)
+..|++.|-+..+|+++.+.+.++-+.+.+|.+.+..+.... +....++..||.+...++-...-++.
T Consensus 359 ~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~ 438 (622)
T PTZ00456 359 ADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVW 438 (622)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566888899999999999999999999999988776653211 12345899999999999999999998
Q ss_pred cCCCCCcchHHHHH
Q psy2177 657 SGKKLDSYTKLGDI 670 (677)
Q Consensus 657 ~~~~~~~~~~~~~~ 670 (677)
.+.....+.-..++
T Consensus 439 GG~Gy~~e~~ler~ 452 (622)
T PTZ00456 439 GGHGYIKGNGMEQI 452 (622)
T ss_pred cCCCccCCchHHHH
Confidence 88655554444433
No 93
>PLN02443 acyl-coenzyme A oxidase
Probab=27.74 E-value=7e+02 Score=30.02 Aligned_cols=69 Identities=14% Similarity=-0.035 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCchHH----HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy2177 596 QFLLNRLAAAAFDTYTMAVVLSRATRSLNK-------NLPSASHE----QLLAELWCYEAAERVSQNLGALNSGKKLDSY 664 (677)
Q Consensus 596 q~~l~rla~~~~~ly~~~a~l~ra~~~~~~-------~~~~~~~e----~~la~~~~~~~~~~~~~~~~~l~~~~~~~~~ 664 (677)
+....||++++..+|++-....++...+.. +......| ...+..||.+...++-+.+.+++.|.....+
T Consensus 328 ~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~ 407 (664)
T PLN02443 328 KTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCS 407 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 334899999999999999988887766642 22221223 4688899999999999999999888544433
No 94
>PF12186 AcylCoA_dehyd_C: Acyl-CoA dehydrogenase C terminal; InterPro: IPR020964 This entry represents the C-terminal alpha helical domain of some bacterial Acyl-CoA dehydrogenases. It is found in association with PF02770 from PFAM, PF00441 from PFAM, PF02771 from PFAM. There is a conserved ARRL sequence motif. ; PDB: 2OKU_A.
Probab=24.25 E-value=5.8e+02 Score=23.64 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=62.4
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q psy2177 559 VHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAE 638 (677)
Q Consensus 559 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~ 638 (677)
..|.+++....+.+...++..++..+- -.++-.-.-|+.+||-+++.+++..--.|--|+++ | +.=..-|+
T Consensus 17 ~~~el~~l~~rl~~m~~~yeeav~~Vk--e~~nqe~~Df~ARRLvEMa~~iims~LLl~dA~k~-----p--elf~kSA~ 87 (114)
T PF12186_consen 17 VSPELQPLKERLKKMTEKYEEAVAKVK--EAKNQELQDFHARRLVEMAAHIIMSYLLLRDASKA-----P--ELFAKSAN 87 (114)
T ss_dssp --GGGHHHHHHHHHHHHHHHHHHHHHH--TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------GGGHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH--hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----H--HHHHHHHH
Confidence 356788778888888888877755433 23344456789999999999999888888888865 2 22246788
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy2177 639 LWCYEAAERVSQNLGALNS 657 (677)
Q Consensus 639 ~~~~~~~~~~~~~~~~l~~ 657 (677)
.||.-+-..|...-.-|.+
T Consensus 88 Vyvr~ae~ev~~~~~~I~~ 106 (114)
T PF12186_consen 88 VYVRYAEAEVAKHAAFIMN 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 8998888887776665554
Done!