RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2177
(677 letters)
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 565 bits (1459), Expect = 0.0
Identities = 260/380 (68%), Positives = 309/380 (81%)
Query: 39 AKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDP 98
+ +S SF + MF+GQL T+QVFPYP VL E+Q+ LK LV+PV++FF+EVNDP
Sbjct: 12 DLGTENLYFQSMSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDP 71
Query: 99 LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLG 158
KND+LE VE T +GL +LGAF LQVP +LGG+GL NTQYAR+VEIVG +DL VGI LG
Sbjct: 72 AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLG 131
Query: 159 AHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGK 218
AHQSIGFKGILL G QK KYLP++++G+ AAFCLTEP+SGSDA SI+T AV SP GK
Sbjct: 132 AHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGK 191
Query: 219 HYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKK 278
+Y LNGSK+WISNGG A+I TVFA+TPV D TG V +K+TAF+VER FGG+T GPPEKK
Sbjct: 192 YYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKK 251
Query: 279 MGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKA 338
MGIKASNTAEV+++ V+VP ENVLG VG+GFKVAM ILNNGRFGMAAALAGTMR + KA
Sbjct: 252 MGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKA 311
Query: 339 VDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISK 398
VDHAT R QFG +I +FG IQEKLARM +L YVTES+AYM+S NMD G+ D+ +EAAISK
Sbjct: 312 VDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISK 371
Query: 399 VFASEAAWYVTDEAIQILGG 418
+F SEAAW VTDE IQI+GG
Sbjct: 372 IFGSEAAWKVTDECIQIMGG 391
Score = 144 bits (364), Expect = 2e-36
Identities = 70/167 (41%), Positives = 99/167 (59%), Gaps = 1/167 (0%)
Query: 508 LEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESG 567
L+G G L L A KNP + GL++GE K+ + GL + SL +VH L+ SG
Sbjct: 426 LQGCMDKGKELSGLGSALKNPFGNAGLLLGEAGKQLRRRAGLGSGLSLSGLVHPELSRSG 485
Query: 568 VLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNL 627
L +++ F VE+ L+K+ KG+V EQFLL RLA A D Y M VVLSRA+RSL++
Sbjct: 486 ELAVRALEQFATVVEAKLIKHKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGH 545
Query: 628 PSASHEQLLAELWCYEAAERVSQNLGALNSG-KKLDSYTKLGDIAKN 673
P+A HE++L + WC EAA R+ + + AL S + + Y I+K
Sbjct: 546 PTAQHEKMLCDTWCIEAAARIREGMAALQSDPWQQELYRNFKSISKA 592
Score = 78.6 bits (194), Expect = 2e-15
Identities = 41/76 (53%), Positives = 54/76 (71%)
Query: 435 AKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDP 494
+ +S SF + MF+GQL T+QVFPYP VL E+Q+ LK LV+PV++FF+EVNDP
Sbjct: 12 DLGTENLYFQSMSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDP 71
Query: 495 LKNDSLETVEPNTLEG 510
KND+LE VE T +G
Sbjct: 72 AKNDALEMVEETTWQG 87
Score = 28.9 bits (65), Expect = 6.5
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 2/100 (2%)
Query: 319 GRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYM 378
+ LA V+ + + I + + ++LA A+ Y +
Sbjct: 479 PELSRSGELAVRALEQFATVVEAKLIK--HKKGIVNEQFLLQRLADGAIDLYAMVVVLSR 536
Query: 379 ISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
S ++ G E + + EAA + + +
Sbjct: 537 ASRSLSEGHPTAQHEKMLCDTWCIEAAARIREGMAALQSD 576
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 489 bits (1262), Expect = e-167
Identities = 159/395 (40%), Positives = 212/395 (53%), Gaps = 37/395 (9%)
Query: 40 KEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPL 99
EE+K ++ + + +V+ PE E K + F + PL
Sbjct: 2 TEEKKLWQKGGGWLLE------VPERVYT-PEDFDESV----KEIARTTRTFVEREVLPL 50
Query: 100 --KNDSLETVEP-NTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIV 156
+ + E + +LG ++ VP++ GGL L + E + G +
Sbjct: 51 LERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEELSG-SGGFSVT 109
Query: 157 LGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPD 216
GAH SIG ++ G EQK KYLP++++G+ AA+CLTEP SGSDA + KTRA LS D
Sbjct: 110 YGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSED 169
Query: 217 GKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPE 276
GKHYILNG K WISN GFA + TVFA+ D + TAF+VER G++ GP E
Sbjct: 170 GKHYILNGVKQWISNAGFAHLFTVFAKV---DGE------HFTAFLVERDTPGLSFGPEE 220
Query: 277 KKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTK 336
KKMGIKAS+T +V EDVKVPVENVLG +G G K+A +LN GR+ + A G + +
Sbjct: 221 KKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALE 280
Query: 337 KAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNG---------- 386
+ +ATQRVQFGR I FG IQ+KL MA Y ES Y G +D
Sbjct: 281 LSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAV 340
Query: 387 ---SQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
++Y +EA+I KV SE YV DE +QI GG
Sbjct: 341 MAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGG 375
Score = 80.8 bits (200), Expect = 4e-16
Identities = 33/158 (20%), Positives = 52/158 (32%), Gaps = 20/158 (12%)
Query: 521 LQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVLFGEA 580
L++A K + + ++ L P L NL + L
Sbjct: 413 LRRALKGQLPLMQAA--QRLQKELLEPSFEEPEDLELHQVQNLKK----------LALMV 460
Query: 581 VESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELW 640
+ KYG+GV EEQ +L +A D Y L RA R +LA ++
Sbjct: 461 AGLAVQKYGQGVEEEQEVLGAVADILIDAYAAESALLRARR-------LGGLAPVLARIY 513
Query: 641 CYEAAERVSQNLG-ALNSGKKLDSYTKLGDIAKNELKF 677
+A +R L + D + A+ K
Sbjct: 514 LAQALDRAQAGALSVLPRLVEGDEARVVYSAARRLTKR 551
Score = 35.8 bits (83), Expect = 0.049
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 11/63 (17%)
Query: 436 KEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPL 495
EE+K ++ + + +V+ PE E K + F + PL
Sbjct: 2 TEEKKLWQKGGGWLLE------VPERVYT-PEDFDESV----KEIARTTRTFVEREVLPL 50
Query: 496 KND 498
Sbjct: 51 LER 53
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 488 bits (1258), Expect = e-166
Identities = 139/400 (34%), Positives = 196/400 (49%), Gaps = 42/400 (10%)
Query: 46 AKESQSFTMNMFRG------QLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPL 99
+ + N +G ++ +QVF PE + + KM+ F P
Sbjct: 1 SNAMEKTVGNAVKGGSFLVDEITIDQVFT-PEDFSSEH----KMIAKTTEDFIVNEVLPE 55
Query: 100 KN--DSLETVEPN-TLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIV 156
+ E L+ +LG VP++ GG+GL A + E I
Sbjct: 56 LEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GFAIT 114
Query: 157 LGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPD 216
GAH IG I+L GN EQK KYLP ++TG++ AA+ LTEP SGSDA KT A L+ +
Sbjct: 115 HGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAE 174
Query: 217 GKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPE 276
G HY+LNG K WI+N FA++ V+A+ + +AFIVE+ + GV++ P E
Sbjct: 175 GTHYVLNGEKQWITNSAFADVFIVYAKIDGE---------HFSAFIVEKDYAGVSTSPEE 225
Query: 277 KKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTK 336
KKMGIK S+T + ED VP EN+LG +G G +A ILN GR+ + G+ + +
Sbjct: 226 KKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVE 285
Query: 337 KAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNG---------- 386
+ +A QR QF + I F IQEKLA MA Y ES Y G ++
Sbjct: 286 ISAQYANQRQQFKQPIARFPLIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVK 345
Query: 387 --------SQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+Y +E +++KVF SE Y DE +QI GG
Sbjct: 346 DGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGG 385
Score = 99.0 bits (247), Expect = 8e-22
Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 25/159 (15%)
Query: 509 EGIQYAG-GHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESG 567
++ A G L LQKA K + ++ EV L A
Sbjct: 421 TFLRKAMKGELPLLQKAQKLQEELMMMMPEEVGDEPL-------------------ALQK 461
Query: 568 VLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKN- 626
L + + + KYGK + +EQ +L +A + Y M + R +++
Sbjct: 462 YLVNNAKKIGLMVAGLAAQKYGKALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTTG 521
Query: 627 LPSASHEQLLAELWCYEAAERVSQN----LGALNSGKKL 661
L + L E++C EA + + L A+ +G L
Sbjct: 522 LEKNKQKVLYTEVFCQEAFNEIEAHAKETLIAVENGDML 560
Score = 36.9 bits (86), Expect = 0.019
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 11/80 (13%)
Query: 442 AKESQSFTMNMFRG------QLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPL 495
+ + N +G ++ +QVF PE + + KM+ F P
Sbjct: 1 SNAMEKTVGNAVKGGSFLVDEITIDQVFT-PEDFSSEH----KMIAKTTEDFIVNEVLPE 55
Query: 496 KNDSLETVEPNTLEGIQYAG 515
+ ++ ++ AG
Sbjct: 56 LEYLEQHEFDRSVRLLKEAG 75
Score = 34.2 bits (79), Expect = 0.15
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 3/105 (2%)
Query: 316 LNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESL 375
+ + + L + + A Q+ +G+ +D I +A + Y ES
Sbjct: 452 VGDEPLALQKYLVNNAKKIGLMVAGLAAQK--YGKALDKEQEILVNIADIVSNLYAMESA 509
Query: 376 AYMISGNMD-NGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGI 419
+ G + + ++VF EA + A + L +
Sbjct: 510 VLRTEKAIKTTGLEKNKQKVLYTEVFCQEAFNEIEAHAKETLIAV 554
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 347 bits (893), Expect = e-114
Identities = 117/348 (33%), Positives = 186/348 (53%), Gaps = 14/348 (4%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
L E +ML+ F ++ P+ + D ++ + LG ++ VP++LG
Sbjct: 6 LPETH----QMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELG 61
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G GL YA +E + + G+++ + S+ IL G+ EQK ++ ++G +
Sbjct: 62 GAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKI 121
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEK 250
F L+EP +GSDAG+ T A +G ++LNG+K WI+N A VFA T D
Sbjct: 122 GCFALSEPGNGSDAGAASTTARA--EGDSWVLNGTKAWITNAWEASAAVVFAST---DRA 176
Query: 251 TGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310
++AF+V G+T G E K+GI+ S+TA + +ED ++P +++LG G GFK
Sbjct: 177 LQN--KSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFK 234
Query: 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHY 370
+AMQ L+ GR G+A+ G ++ AV++A R+ FG + IQ KLA MAL
Sbjct: 235 IAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALE 294
Query: 371 VTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
L + + DN + + EAA++K+ ASEAA ++ +AIQILGG
Sbjct: 295 SARLLTWRAAMLKDNK-KPFIKEAAMAKLAASEAATAISHQAIQILGG 341
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 345 bits (888), Expect = e-113
Identities = 119/349 (34%), Positives = 182/349 (52%), Gaps = 12/349 (3%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
++ + ++ P +F P + D + + L + G F VP+ G
Sbjct: 7 EGAEE----RQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYG 62
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G GL+ +ARMVE + D A+ + + +H S+ ILL G+ QK +LP++++G+
Sbjct: 63 GAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEAL 122
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQT-PVKDE 249
A+ LTEP SGSDA ++KT+A + LNG+K +I+ G A + V A+T P
Sbjct: 123 GAWGLTEPGSGSDAAALKTKAEK--VEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSP 180
Query: 250 KTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGF 309
+ ++AF R G+ G E+K+G+ AS+TA++ ED+ VP E +LG G GF
Sbjct: 181 ERKH--QGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGF 238
Query: 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLH 369
+++L+ GR G+AA G ++ A+ +A R FGR I F + KLA A
Sbjct: 239 YDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATEL 298
Query: 370 YVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
L + D G + + LEAA +K+FASEAA DEAIQILGG
Sbjct: 299 EAARLLYLKAAELKDAG-RPFTLEAAQAKLFASEAAVKACDEAIQILGG 346
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 345 bits (887), Expect = e-113
Identities = 114/349 (32%), Positives = 191/349 (54%), Gaps = 17/349 (4%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
T+++ M+ V KF E PL D +E + ++GL+ G ++V + G
Sbjct: 29 FTDEE----MMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYG 84
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G G + ++E + D +V + ++ I G EQKA YLP+++T K
Sbjct: 85 GTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-V 143
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQT-PVKDE 249
+FCL+E +GSD+ ++KTRA +G +Y+LNGSK+WIS+ A + V A P
Sbjct: 144 GSFCLSEAGAGSDSFALKTRADK--EGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGY 201
Query: 250 KTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGF 309
K G +T+F+V+R G+ G PE K+G++AS+T + +E+VKVP N+LG +G+G+
Sbjct: 202 K-G-----ITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGY 255
Query: 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLH 369
K A+ LN GR G+AA + G + + + +R+QFG+R+ F +Q ++A +A
Sbjct: 256 KYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQL 315
Query: 370 YVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
L Y + ++ G + + EA+++K +ASE A T + I+ +GG
Sbjct: 316 EAARLLTYNAARLLEAG-KPFIKEASMAKYYASEIAGQTTSKCIEWMGG 363
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 342 bits (880), Expect = e-112
Identities = 120/349 (34%), Positives = 192/349 (55%), Gaps = 21/349 (6%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
LT++Q ++++D V + EV PL + D L+ L +LG + P++ G
Sbjct: 3 LTQEQ----RLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWG 58
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G+GL + +A +E + D +V +++ + +L G+ QK +YL ++ G+
Sbjct: 59 GVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWI 118
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEK 250
AFCLTEP +GSDA S++ A ++LNG K WI++ G A + V A+T
Sbjct: 119 GAFCLTEPQAGSDAKSLRAEARR--VKGGFVLNGVKSWITSAGHAHLYVVMART------ 170
Query: 251 TGKVVDK-VTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGF 309
+K ++AF+VE+ G++ G PE+KMG+ A++TAEV E+V VP EN+LG G G
Sbjct: 171 -----EKGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGL 225
Query: 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLH 369
A+ L++GR G+AA G R + A +A +R QFG+++ I K+A M +
Sbjct: 226 AYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKI 285
Query: 370 YVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+L + D G + + LEA+ +K+FAS AA VT EA+Q+LGG
Sbjct: 286 AAARALVLEAARKKDRG-ERFTLEASAAKLFASAAAVEVTREAVQVLGG 333
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 342 bits (881), Expect = e-112
Identities = 112/348 (32%), Positives = 180/348 (51%), Gaps = 14/348 (4%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
L E+ L + + ++ P + D L L G ++ VP++ G
Sbjct: 19 LPEEH----IALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYG 74
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G G + ++E V D + ++ + +G G++L G+ E K + LP V++G+
Sbjct: 75 GQGADSVATCIVIEEVARVDCSASLIPAVN-KLGTMGLILRGSEELKKQVLPAVASGEAM 133
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEK 250
A++ L+E +GSDA S++TRAV DG +ILNGSK WI+NGG + TV A T D
Sbjct: 134 ASYALSEREAGSDAASMRTRAVA--DGDDWILNGSKCWITNGGKSTWYTVMAVT---DPD 188
Query: 251 TGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310
G + ++AF+V + G T GP E+K+GIK S T E+Y+E+ ++P + ++G G GFK
Sbjct: 189 KGA--NGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFK 246
Query: 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHY 370
A+ L++ R + A G + A+ + +R QFGR + +Q LA MA+
Sbjct: 247 TALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIE 306
Query: 371 VTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ Y + + G D +A SK FAS+ A VT +A+Q+ GG
Sbjct: 307 AARLMVYSAAARAERGEGDLGFISAASKCFASDVAMEVTTDAVQLFGG 354
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 342 bits (879), Expect = e-112
Identities = 130/351 (37%), Positives = 179/351 (50%), Gaps = 16/351 (4%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
LT+ Q + + F ++ P + D + ++ L LG + G
Sbjct: 5 LTDIQ----QDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYG 60
Query: 131 GLGLTNT---QYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTG 187
G G Y VE + D V I L A S+ I G QK K+L + G
Sbjct: 61 GSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEG 120
Query: 188 KEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVK 247
+ AF LTEP +G+DA +T A + DG Y LNGSKI+I+NGG A+I VFA T
Sbjct: 121 TKLGAFGLTEPNAGTDASGQQTIATKNDDG-TYTLNGSKIFITNGGAADIYIVFAMT--- 176
Query: 248 DEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGN 307
D+ G +TAFI+E G T G E KMGI S T E+ ++DVKVP EN+LG G
Sbjct: 177 DKSKGN--HGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGK 234
Query: 308 GFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMAL 367
GFK+AM L+ GR G+AA G + AV+++ QRVQFG+ + F +I KLA M +
Sbjct: 235 GFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKM 294
Query: 368 LHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+L Y + G + + ++AAI+K AS+ A VT EA+QI GG
Sbjct: 295 QIEAARNLVYKAACKKQEG-KPFTVDAAIAKRVASDVAMRVTTEAVQIFGG 344
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 339 bits (872), Expect = e-111
Identities = 127/348 (36%), Positives = 182/348 (52%), Gaps = 15/348 (4%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
LTE+Q + L +F EV P+ + D E V +E L ++G + +P++ G
Sbjct: 5 LTEEQ----RQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G+GL + E + + + + +G +LL G EQK ++L ++
Sbjct: 61 GMGLKMLDEVIVGEELAYACMGIYTIP-MASDLGITPVLLAGTEEQKERFLRPLTEKPAL 119
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEK 250
AAF L+EP +GSDA ++KTRA+ G HY+LNG+K+WISNGG AE + VFA + +
Sbjct: 120 AAFALSEPGNGSDAAALKTRAIR--QGDHYVLNGTKMWISNGGEAEWVVVFATV---NPE 174
Query: 251 TGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310
V A +VER G + KMG +AS T E+ +EDVKVPVEN LG G GFK
Sbjct: 175 LRH--KGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFK 232
Query: 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHY 370
+AMQ LN R +AA G R +A +A +R FG I +F IQ KL M +
Sbjct: 233 IAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIE 292
Query: 371 VTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
Y + D G + +AI+K +ASE A+ ++AIQI GG
Sbjct: 293 TARMYTYYAAWLADQG-LPHAHASAIAKAYASEIAFEAANQAIQIHGG 339
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 338 bits (869), Expect = e-110
Identities = 116/349 (33%), Positives = 169/349 (48%), Gaps = 14/349 (4%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
TE Q K KF E P+ + D + W+LG + +P++ G
Sbjct: 16 FTEQQ----KEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 71
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
GLGL + E + V + + S+G I++ GN +QK KYL R++
Sbjct: 72 GLGLGTFDACLISEELAYGCTGVQTAIEGN-SLGQMPIIIAGNDQQKKKYLGRMTEEPLM 130
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQT-PVKDE 249
A+C+TEP +GSD IKT+A G YI+NG K+WI+NGG A + A++ P
Sbjct: 131 CAYCVTEPGAGSDVAGIKTKAEK--KGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 188
Query: 250 KTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGF 309
K T FIVE G+ G E MG + S+T + +EDVKVP ENVL G G GF
Sbjct: 189 PANK---AFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGF 245
Query: 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLH 369
KVAM + R +AA G + +A +A +R FG+ + I LA MA+
Sbjct: 246 KVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKV 305
Query: 370 YVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ + +D+G + A+I+K FA + A + +A+QILGG
Sbjct: 306 ELARMSYQRAAWEVDSG-RRNTYYASIAKAFAGDIANQLATDAVQILGG 353
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 334 bits (859), Expect = e-109
Identities = 104/348 (29%), Positives = 184/348 (52%), Gaps = 17/348 (4%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
+++ L++ + D+V DP+ +++ ET E L G SL P++ G
Sbjct: 16 PSQEA----AELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWG 71
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G G Y +++E + +V + + H S+ +L+ G EQK ++LP + +G++
Sbjct: 72 GGGQPYEVYLQVLEEIAARWASVAVAVSVH-SLSSHPLLVFGTEEQKKRWLPGMLSGEQI 130
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEK 250
A+ L+EP +GSDA +++ A Y++NGSK WI++GG A+ T+FA +
Sbjct: 131 GAYSLSEPQAGSDAAALRCAATP--TDGGYVINGSKSWITHGGKADFYTLFA-------R 181
Query: 251 TGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310
TG+ V+ F+V G++ G PE+KMG+ A T +Y++ ++ + +G G G +
Sbjct: 182 TGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQ 241
Query: 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHY 370
+A L++GR G+AA G ++ +AV +A +R FGR+I + LA MA
Sbjct: 242 IAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVA 301
Query: 371 VTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ + D G + Y +A+I+K+ A++AA VT +A+Q+ GG
Sbjct: 302 TARATYLDAARRRDQG-RPYSQQASIAKLTATDAAMKVTTDAVQVFGG 348
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 332 bits (854), Expect = e-108
Identities = 110/351 (31%), Positives = 173/351 (49%), Gaps = 16/351 (4%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVE-PNTLEGLW----DLGAFSLQVPQ 127
L+E+Q + L + KF E P + + E N E W +LG + P
Sbjct: 13 LSEEQ----RQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLRE-FWKQLGNLGVLGITAPV 67
Query: 128 DLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTG 187
GG GL ++ ++E + AVG+ GAH ++ ++ GN QK KYLP++ +G
Sbjct: 68 QYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISG 127
Query: 188 KEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVK 247
+ A ++EP +GSD S+K +A G HYILNG+K WI+NG A+++ V+A+T
Sbjct: 128 EYIGALAMSEPNAGSDVVSMKLKAEK--KGNHYILNGNKFWITNGPDADVLIVYAKT--- 182
Query: 248 DEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGN 307
D +TAFIVE+ G ++ K+G++ SNT E+ +ED K+P N+LG
Sbjct: 183 DLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENK 242
Query: 308 GFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMAL 367
G V M L+ R +A G M++V + + R FG++I F +Q K+A M
Sbjct: 243 GVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYT 302
Query: 368 LHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
Y ++ D G + A ++++E A V + IQ GG
Sbjct: 303 RLMACRQYVYNVAKACDEG-HCTAKDCAGVILYSAECATQVALDGIQCFGG 352
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 331 bits (852), Expect = e-108
Identities = 103/348 (29%), Positives = 164/348 (47%), Gaps = 15/348 (4%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
L E+Q K F P + D E + + LG + + D+G
Sbjct: 19 LNEEQ----KEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVG 74
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G GL+ + + E + + + H ++ I GN EQ+ K+ P + T ++F
Sbjct: 75 GSGLSRLDTSVIFEALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEKF 133
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEK 250
A++CLTEP SGSDA S+ T A G HYILNGSK +IS G ++I V +T
Sbjct: 134 ASYCLTEPGSGSDAASLLTSAKK--QGDHYILNGSKAFISGAGESDIYVVMCRT---GGP 188
Query: 251 TGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310
K ++ +VE+ G++ G EKK+G + T V +ED VPV N +G G GF
Sbjct: 189 GPK---GISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFL 245
Query: 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHY 370
+A++ LN GR +A+ G + DH R QFG + S +Q LA MA
Sbjct: 246 IAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLV 305
Query: 371 VTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ + + +D +++K+FA++ + + ++A+Q+ GG
Sbjct: 306 AARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGG 353
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 327 bits (840), Expect = e-106
Identities = 75/309 (24%), Positives = 131/309 (42%), Gaps = 14/309 (4%)
Query: 111 TLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILL 170
L L G +V + GGLGL + + VG ++ V+ + + +
Sbjct: 29 LLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQ-GMAAWTVQR 87
Query: 171 VGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS 230
+G+ Q+A +L +++G + AA +E +GSD +++TR L DG +++G K+W +
Sbjct: 88 LGDAGQRATFLKELTSG-KLAAVGFSERQAGSDLSAMRTRVRL--DGDTAVVDGHKVWTT 144
Query: 231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVY 290
+A+ + VF +V GV K G +A+ A+++
Sbjct: 145 AAAYADHLVVFG-------LQED--GSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLH 195
Query: 291 YEDVKVPVENVLGGVGNGFKVAMQ-ILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFG 349
+ V+VP VL G G + + L GR +A G +R+ AV HA R QFG
Sbjct: 196 LDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFG 255
Query: 350 RRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVT 409
R + + +A + + + S + D GS + ++K A+E A
Sbjct: 256 RPLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAKHVAAERAAAGA 315
Query: 410 DEAIQILGG 418
A Q+L
Sbjct: 316 ATAAQVLAS 324
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 325 bits (836), Expect = e-105
Identities = 102/353 (28%), Positives = 173/353 (49%), Gaps = 20/353 (5%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVE---PNTLEGLWDLGAFSLQVPQDL 129
L+++ +ML V F ++ P + + + +LG F +P++
Sbjct: 5 LSKEL----QMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEY 60
Query: 130 GGLGLTNTQ--YARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTG 187
GG G+ + E + A+ + L IL G+ K KY+P++S+
Sbjct: 61 GGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSA 120
Query: 188 KEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQT-PV 246
+ F +TEP +GSD ++ + A G H++LNGSK WISN A+++ +A T
Sbjct: 121 EFLGGFGITEPDAGSDVMAMSSTAED--KGDHWLLNGSKTWISNAAQADVLIYYAYTDKA 178
Query: 247 KDEKTGKVVDKVTAFIVE-RSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGV 305
+ G ++AF++E R+F G+ + EK +G AS T E++ ++VKVP EN+LG
Sbjct: 179 AGSR-G-----LSAFVIEPRNFPGIKTSNLEK-LGSHASPTGELFLDNVKVPKENILGKP 231
Query: 306 GNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARM 365
G+G ++ LN+ R AA G ++ A+ + +R QFG+ I F Q+ +A+M
Sbjct: 232 GDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQM 291
Query: 366 ALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
A+ LAY + D G + L+ A++K A EA + A++ILG
Sbjct: 292 AVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGA 344
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 307 bits (788), Expect = 2e-98
Identities = 88/349 (25%), Positives = 142/349 (40%), Gaps = 15/349 (4%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLKN--DSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
T ++ + L V F + P + + + +LG P+D G
Sbjct: 26 TTAER----EALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAG 81
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQS-IGFKGILLVGNPEQKAKYLPRVSTGKE 189
G G + E + G+ I ++ G+ Y+ G++
Sbjct: 82 GSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEK 141
Query: 190 FAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDE 249
A +TEP GSD G ++TRA L DG HY++NG+K +I++G A+ + A+T
Sbjct: 142 IGALAITEPGGGSDVGHLRTRADL--DGDHYVINGAKTYITSGVRADYVVTAARTGGPGA 199
Query: 250 KTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGF 309
V+ +V++ G KMG ++S+TAE+ Y DV+VPV N++G GF
Sbjct: 200 G------GVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGF 253
Query: 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLH 369
R G+A + V+ R FGR + S +Q LA MA
Sbjct: 254 AQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRI 313
Query: 370 YVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
V + G + E +K A EA +V ++A+Q+ GG
Sbjct: 314 DVARVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGG 362
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 302 bits (776), Expect = 1e-96
Identities = 89/350 (25%), Positives = 153/350 (43%), Gaps = 16/350 (4%)
Query: 72 VLTEDQSDTLKMLVDPVTKFFDEVNDPLKN--DSLETVEPNTLEGLWDLGAFSLQVPQDL 129
T ++ + L F + P + + + + ++G + P+++
Sbjct: 28 WTTPER----RALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEV 83
Query: 130 GGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQS-IGFKGILLVGNPEQKAKYLPRVSTGK 188
GG G A + E + + G+ I I G+ +Y+ GK
Sbjct: 84 GGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGK 143
Query: 189 EFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKD 248
+ +TEP +GSD +++TRAV +G Y++NG+K +I++G A+ +T +T
Sbjct: 144 MIGSLGVTEPGAGSDVANLRTRAVR--EGDTYVVNGAKTFITSGVRADFVTTAVRTGGPG 201
Query: 249 EKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNG 308
G V+ +++++ G KMG + S+TAE+ + DV+VP +N++G +G
Sbjct: 202 YG-G-----VSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSG 255
Query: 309 FKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALL 368
F MQ R G+A T A A +R FGR + I+ KLA MA
Sbjct: 256 FLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQ 315
Query: 369 HYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
V + + G +D E +++K A A YV +EA+QI GG
Sbjct: 316 VDVACTYTRAVMQRWLAG-EDVVAEVSMAKNTAVYACDYVVNEAVQIFGG 364
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 298 bits (766), Expect = 2e-95
Identities = 94/302 (31%), Positives = 147/302 (48%), Gaps = 7/302 (2%)
Query: 117 DLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQ 176
+ G V + GGL + E + + + +G H I I G EQ
Sbjct: 52 ENGFLCPWVDEKYGGLNADFAYSVVINEELEKVG-SSLVGIGLHNDIVTPYIASYGTEEQ 110
Query: 177 KAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAE 236
K K+LP+ TG+ A +TEP +GSD +I T AV DG +YI+NG K +I+NG A+
Sbjct: 111 KQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVK--DGDYYIVNGQKTFITNGIHAD 168
Query: 237 IMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKV 296
++ V +T D + ++ +VER G T G +K+G+ A +TAE++++D KV
Sbjct: 169 LIVVACKT---DPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKV 225
Query: 297 PVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFG 356
P N+LG G GF M+ L R +A A + + QR FG+R+ F
Sbjct: 226 PAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQ 285
Query: 357 TIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQIL 416
T+Q +LA MA + + + G + E +++K + +E A V EA+Q+
Sbjct: 286 TVQFRLAEMATEIALGRTFVDRVIEEHMAG-KQIVTEVSMAKWWITEMAKRVAAEAMQLH 344
Query: 417 GG 418
GG
Sbjct: 345 GG 346
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 299 bits (768), Expect = 5e-95
Identities = 81/378 (21%), Positives = 139/378 (36%), Gaps = 40/378 (10%)
Query: 73 LTEDQSDTLKML-------VDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQV 125
L+ Q T + + P + + + T T G Q+
Sbjct: 7 LSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQP--TYAAAVSAGILKGQI 64
Query: 126 PQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVS 185
GG G T + A +VE + + + + A +G I L Q A++L
Sbjct: 65 SPAHGGTGGTLIESAILVEECYSVEPSAALTIFAT-GLGLTPINLAAG-PQHAEFLAPFL 122
Query: 186 TGKE--FAAFCLTEPASGSDA-----GSIKTRAVLSPDGKHYILNGSKIWISNGGFAE-- 236
+G+ A+ +EP ++A +T A L +G +++NG K+W +N +
Sbjct: 123 SGEGSPLASLVFSEPGGVANALEKGAPGFQTTARL--EGDEWVINGEKMWATNCAGWDFK 180
Query: 237 ------IMTVFAQTPVKDEKTGKVVDKVTAFIV------ERSFGGVTSGPPEKKMGIKAS 284
++ A TP E+ +KV +V G G +
Sbjct: 181 GCDLACVVCRDATTP--LEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSV 238
Query: 285 NTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQ 344
+ V Y +V+VP +NVL G G KVA + + A G MR+ A+ A +
Sbjct: 239 SGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKE 298
Query: 345 RVQFGRR-IDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQD---YHLEAAISKVF 400
+ G + + L+ + + +L + + M+NG D A +KVF
Sbjct: 299 DNRGGAVPLLERQAFADLLSGVKIQTEAARALTWKAAHAMENGPGDYDARRELALAAKVF 358
Query: 401 ASEAAWYVTDEAIQILGG 418
SEAA + I +G
Sbjct: 359 CSEAAVKACTDVINAVGI 376
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 298 bits (766), Expect = 1e-94
Identities = 59/362 (16%), Positives = 125/362 (34%), Gaps = 33/362 (9%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
+T ++L+D + + ++D T +T + L G VP +LG
Sbjct: 20 VTPAG----RVLLDRLAAHLPRI-RSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELG 74
Query: 131 GLGLTN-TQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKE 189
GLG+ A + V D + + L S G + +++A+ L
Sbjct: 75 GLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGM 134
Query: 190 FAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDE 249
A + ++ T ++L+G K +S + A+T D
Sbjct: 135 VAGDAVVCSGIKDHHTAVTTLRPD--GAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDG 192
Query: 250 KTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGF 309
+ + +V R G T +G++AS T ++ ++D +P ++VL G
Sbjct: 193 PPR-----LASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGA 247
Query: 310 K--VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMA- 366
+ + + G ++ AV +R + + +A +
Sbjct: 248 RNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAA-----ALTLVAEIDS 302
Query: 367 ------LLHY----VTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQIL 416
++L+ +SG+MD + +K+ + A + + + ++
Sbjct: 303 RLYALRATAGSALTAADALSADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLV 362
Query: 417 GG 418
GG
Sbjct: 363 GG 364
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 298 bits (764), Expect = 2e-94
Identities = 63/381 (16%), Positives = 134/381 (35%), Gaps = 42/381 (11%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL------KNDSLET--VEPNTLEGLWDLGAFSLQ 124
L+ Q F + V + D L G Q
Sbjct: 6 LSPSQ----LEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQ 61
Query: 125 VPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRV 184
VP LGG + + ++E + + A I + A ++G ++L +P + K+L
Sbjct: 62 VPIPLGGTMESLVHESIILEELFAVEPATSITIVAT-ALGLMPVILCDSPSLQEKFLKPF 120
Query: 185 STGKE--FAAFCLTEPASGSD-----AGSIKTRAVLSPDGKHYILNGSKIWISNGGF--- 234
+G+ A+ +EP ++ ++T A G ++++G K+W SN G
Sbjct: 121 ISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARK--VGNEWVISGEKLWPSNSGGWDY 178
Query: 235 --AEIMTVFAQTPVKDEKTGKVVDK----VTAFIVERSFGGVTSGP------PEKKMGIK 282
A++ V + K + +V R + G
Sbjct: 179 KGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHI 238
Query: 283 ASNTAEVYYEDVKVPVENVLGGVGNGFK-VAMQILNNGRFGMAAALAGTMRSVTKKAVDH 341
++ + + VP EN+L G + + + A GT R+ ++A+
Sbjct: 239 TTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVF 298
Query: 342 ATQRVQFGRR-IDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYH---LEAAIS 397
A + G + I ++ +KL + + L + +++ + ++ A +
Sbjct: 299 AKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQT 358
Query: 398 KVFASEAAWYVTDEAIQILGG 418
K++ ++ A +A++ +G
Sbjct: 359 KIYTTDVAVECVIDAMKAVGM 379
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 283 bits (726), Expect = 2e-89
Identities = 98/348 (28%), Positives = 155/348 (44%), Gaps = 16/348 (4%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDP--LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
L +D+ +M+ D + P + ET + + ++G +P+ G
Sbjct: 19 LADDE----RMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYG 74
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G GL Y + V D ++ S+ I G+ QK KYLP+++TG+
Sbjct: 75 GPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWI 134
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEK 250
F LTEP GSD GS+ TRA Y L+GSK+WI+N A++ V+A+ DE
Sbjct: 135 GCFGLTEPNHGSDPGSMVTRAR--KVPGGYSLSGSKMWITNSPIADVFVVWAKL---DED 189
Query: 251 TGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310
++ FI+E+ G+++ K+G++AS T E+ ++ VP EN+L V G +
Sbjct: 190 GRD---EIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHV-KGLR 245
Query: 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHY 370
LN+ R+G+A G S A + R QFGR + + IQ+KLA M
Sbjct: 246 GPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEIT 305
Query: 371 VTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ + D G +I K + A + A +LGG
Sbjct: 306 LGLQGVLRLGRMKDEG-TAAVEITSIMKRNSCGKALDIARLARDMLGG 352
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 277 bits (710), Expect = 2e-86
Identities = 92/399 (23%), Positives = 166/399 (41%), Gaps = 27/399 (6%)
Query: 30 LASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYP--------EVLTEDQSDTL 81
L+SA A K+ + + + M++ Q FP ++LT ++
Sbjct: 4 LSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEE---- 59
Query: 82 KMLVDPVTKFFDEVNDP--LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQY 139
+ + V + ++ P + + L +G + G GL+ T
Sbjct: 60 QAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKG-YGCPGLSITAN 118
Query: 140 ARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPA 199
A + D + + H S+G I L G+ QK KYLP ++ A + LTEP
Sbjct: 119 AIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPD 178
Query: 200 SGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVT 259
+GSDA + T A + +NG K WI N FA+++ +FA ++ T ++
Sbjct: 179 NGSDASGLGTTATK--VEGGWKINGQKRWIGNSTFADLLIIFA----RNTTTN----QIN 228
Query: 260 AFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNG 319
FIV++ G+ + K+G++ ++ ++V VP E+ L GV N F+ ++L
Sbjct: 229 GFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV-NSFQDTSKVLAVS 287
Query: 320 RFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMI 379
R +A G + + +R QFG + +F Q+KL +M + + +
Sbjct: 288 RVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRL 347
Query: 380 SGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ G Q +A++ K + S A ++LGG
Sbjct: 348 CKLYETG-QMTPGQASLGKAWISSKARETASLGRELLGG 385
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 274 bits (703), Expect = 5e-86
Identities = 70/373 (18%), Positives = 119/373 (31%), Gaps = 43/373 (11%)
Query: 67 FPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQ 124
LT + +VD + + D T E LG
Sbjct: 3 ADLRAPLTPAG----RTVVDLLAGVIPRI-SAEAADRDRTGTFPVEAFEQFAKLGLMGAT 57
Query: 125 VPQDLGGLGLTN-TQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGN-----PEQKA 178
VP +LGGLGLT A + + D + + S G +
Sbjct: 58 VPAELGGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAE 117
Query: 179 KYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIM 238
+ L ++ G+ DA + T G ++L+G K+ +S A
Sbjct: 118 RLLRAMAEGEAAVCGA------LKDAPGVVTELHSDGAG-GWLLSGRKVLVSMAPIATHF 170
Query: 239 TVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPV 298
V AQ D + +V R G+T +G++AS T EV ++ V
Sbjct: 171 FVHAQRRDDDGSVF-----LAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRA 225
Query: 299 ENVL--GGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFG 356
+ +L G VG + M AG ++ AV R R
Sbjct: 226 DELLERGPVGARRDAVLAGQTVSSITMLGIYAGIAQAARDIAVGFCAGRGGEPR-----A 280
Query: 357 TIQEKLARMA-------LLHY----VTESLAYMISGNMDNGSQDYHLEAAISKVFASEAA 405
+ +A + ++ + +SG+ D + +K+ +E A
Sbjct: 281 GARALVAGLDTRLYALRTTVGAALTNADAASVDLSGDPDERGRRMMTPFQYAKMTVNELA 340
Query: 406 WYVTDEAIQILGG 418
V D+ + ++GG
Sbjct: 341 PAVVDDCLSLVGG 353
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 271 bits (695), Expect = 6e-85
Identities = 96/349 (27%), Positives = 160/349 (45%), Gaps = 20/349 (5%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDP--LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
LT ++ K + +F ++ P + + +LG +P + G
Sbjct: 11 LTPEE----KEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYG 66
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G G+++ Y + + D + + S+ I G+ EQK ++LP+++ G+
Sbjct: 67 GAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMV 126
Query: 191 AAFCLTEPASGSDA-GSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDE 249
F LTEP GSD G++KTRA +G ++LNG+K+WI+NG A + ++A KDE
Sbjct: 127 GCFGLTEPDGGSDPYGNMKTRARR--EGDTWVLNGTKMWITNGNLAHLAVIWA----KDE 180
Query: 250 KTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGF 309
+V F+V G + ++KM ++AS T+E+ E+V+VP L G
Sbjct: 181 G-----GEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKA-LGL 234
Query: 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLH 369
K + L RFG+A G + +V ++AV A R FG + +Q KLA M H
Sbjct: 235 KAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWH 294
Query: 370 YVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
LA+ ++ D G + + +++K A A ILGG
Sbjct: 295 TEGLLLAWRLARLKDEG-KLTPAQVSLAKRQNVWKALQAARMARDILGG 342
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 271 bits (695), Expect = 9e-85
Identities = 88/348 (25%), Positives = 146/348 (41%), Gaps = 21/348 (6%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDP--LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
L +D+ + + V +F D P T+ + +LG + + G
Sbjct: 26 LDQDE----RDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHLQG-YG 80
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G Y + D + S+ I G+ EQK ++LPR++ G
Sbjct: 81 CAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAI 140
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEK 250
F LTEP GS+ ++TRA DG +ILNG+K+WI+NG A++ TV+AQT
Sbjct: 141 GCFGLTEPDFGSNPAGMRTRAR--RDGSDWILNGTKMWITNGNLADVATVWAQTD----- 193
Query: 251 TGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFK 310
D + F+V G T+ +K+ ++AS T+E+ ++V++P L G
Sbjct: 194 -----DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLA-EGLS 247
Query: 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHY 370
+ LN RFG+ G R + + + R F + + ++ QEKLA M +
Sbjct: 248 APLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELG 307
Query: 371 VTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
LA + D + ++ K+ A + E +LGG
Sbjct: 308 KGMLLAIHLGRIKDAE-GVRPEQISLGKLNNVREAIAIARECRTLLGG 354
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 268 bits (688), Expect = 1e-83
Identities = 90/349 (25%), Positives = 149/349 (42%), Gaps = 22/349 (6%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVE---PNTLEGLWDLGAFSLQVPQDL 129
L+ ++ + + D V P E E L +LG + +
Sbjct: 30 LSAEE----REIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHLKGY- 84
Query: 130 GGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKE 189
G G++ Y + D + ++ S+ I G+ EQK ++LP +++G
Sbjct: 85 GCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHR 144
Query: 190 FAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDE 249
F LTEP GSD ++TRA G +IL G+K+WI+NG A++ V+A+T
Sbjct: 145 IGCFGLTEPDHGSDPAGMRTRAT--RSGDDWILTGTKMWITNGSVADVAVVWARTD---- 198
Query: 250 KTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGF 309
+ + F+V G T+ + KM ++AS T+E+ + V++P L G
Sbjct: 199 ------EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGA-TSL 251
Query: 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLH 369
++ LN RFG+ G R + A+ +A R QF R I F Q+KLA M L +
Sbjct: 252 GAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTLEY 311
Query: 370 YVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
LA + D G + + ++ K+ A + A +LG
Sbjct: 312 GKGFLLALHLGRQKDAG-ELAPEQVSLGKLNNVREAIEIARTARTVLGA 359
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 265 bits (681), Expect = 9e-83
Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 18/350 (5%)
Query: 71 EVLTEDQSDTLKMLVDPVTKFFDEVNDP--LKNDSLETVEPNTLEGLWDLGAFSLQVPQD 128
E LT D+ ++ D + E P L + E + + +LG +
Sbjct: 12 EQLTTDE----ILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGY 67
Query: 129 LGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGK 188
G G+++ Y + + D + S+ I G+ EQ+ KYLP+++ G+
Sbjct: 68 -GCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGE 126
Query: 189 EFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKD 248
F LTEP SGSD S++TRA + K Y LNG+K WI+N A++ V+A+ +
Sbjct: 127 LLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARC---E 183
Query: 249 EKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNG 308
+ + F++E+ G+++ + K ++AS T + + V+VP ENVL G +
Sbjct: 184 DG------CIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGA-SS 236
Query: 309 FKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALL 368
LNN R+G+A + G A +A R+QFG + IQ+KLA M
Sbjct: 237 LGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTE 296
Query: 369 HYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ + D + ++ K A + +A +LGG
Sbjct: 297 ITLGLHACLQLGRLKDQD-KAAPEMVSLLKRNNCGKALDIARQARDMLGG 345
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 198 bits (506), Expect = 4e-55
Identities = 72/462 (15%), Positives = 142/462 (30%), Gaps = 67/462 (14%)
Query: 89 TKFFDEVNDPLKNDSLETVEPN---TLEGLWDLGAF-SLQVPQDLGGLGLTNTQYARMVE 144
T+ E+ + + ND E T +++ S + + + G+++ ++
Sbjct: 30 TRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVKKSATMVKKMREYGISD--PEEIMW 87
Query: 145 IVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDA 204
L H + +L EQ+ ++ + + TE G+
Sbjct: 88 FKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHL 147
Query: 205 GSIKTRAVLSPDGKHYILNG-----SKIWISN-GGFAEIMTVFAQTPVKDEKTGKVVDKV 258
++T A P + +ILN K W G + V AQ + E G +
Sbjct: 148 RGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYG-----L 202
Query: 259 TAFIV-------ERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGN---- 307
AF+V + G+T G K G + + + ++ ++P EN+L
Sbjct: 203 HAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPD 262
Query: 308 -------GFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRR-------ID 353
K+ + R + A ++ A+ ++ R Q + I
Sbjct: 263 GTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQIL 322
Query: 354 SFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQ-----------DYHLEAAISKVFAS 402
F T Q KL + Y + + ++ + H A K F +
Sbjct: 323 DFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTT 382
Query: 403 EAAWYVTDEAIQILGGINLL----LGRLASASAAVKAKE------EQKAAKESQSFTMNM 452
A +E GG + + E + A+ F M +
Sbjct: 383 WTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTAR----FLMKI 438
Query: 453 FRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDP 494
+ + V L + S ++ V ++N
Sbjct: 439 YDQVRSGKLVGGMVSYLNDLPSQRIQPQQVAVWPTMVDINSL 480
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 182 bits (463), Expect = 2e-49
Identities = 54/333 (16%), Positives = 109/333 (32%), Gaps = 56/333 (16%)
Query: 132 LGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFA 191
L L + R+ + + H + I G EQ+ K+L + +
Sbjct: 79 LRLNEEEAGRLRHFIDQ-----PAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIG 133
Query: 192 AFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN------GGFAEIMTVFAQTP 245
+ TE GS+ ++T A L P ++++ S G + V+A+
Sbjct: 134 CYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLI 193
Query: 246 VKDEKTGKVVDKVTAFIVE-------RSFGGVTSGPPEKKMGIKASN---TAEVYYEDVK 295
+ G + FIV+ +T G KMG A N + ++ V+
Sbjct: 194 TNGKDYG-----IHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVR 248
Query: 296 VPVENVLGGVG------------NGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHAT 343
+P + +L + ++ + R + A + + A ++
Sbjct: 249 IPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAVCIATRYSA 308
Query: 344 QRVQFG-------RRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQ-------- 388
R QFG ++ + T Q +L + Y + + + ++
Sbjct: 309 VRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFA 368
Query: 389 ---DYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ H A K + A +E ++ GG
Sbjct: 369 TLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 176 bits (449), Expect = 5e-49
Identities = 91/379 (24%), Positives = 148/379 (39%), Gaps = 57/379 (15%)
Query: 76 DQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVE-----------PNTLEGLW----DLGA 120
Q+ + ++ V F + P + + E P ++ L G
Sbjct: 22 VQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGL 81
Query: 121 FSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAH------QSIGFKGILLVGNP 174
++L +P GL++ YA + E G A V + + L G+
Sbjct: 82 WNLFLP---AVSGLSHVDYALIAEETGKCFFA-PDVFNCQAPDTGNMEV----LHLYGSE 133
Query: 175 EQKAKYLPRVSTGKEFAAFCLTEPA-SGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGG 233
EQK ++L + G + FC+TEP + SDA +I+ D Y++NG K W S G
Sbjct: 134 EQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQR--DEDSYVINGKKWWSSGAG 191
Query: 234 F--AEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNT---AE 288
+I V +T K + + +V + GV P G + E
Sbjct: 192 NPKCKIAIVLGRTQNTSLSRHK---QHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFE 248
Query: 289 VYYEDVKVPVENVLGGVGNGFKVAMQI-LNNGRFGMAAALAGTMRSVTKKAVDHATQRVQ 347
+++ V+VP N++ G G GF+++ Q L GR G + + ATQR+
Sbjct: 249 IHFNQVRVPATNLILGEGRGFEIS-QGRLGPGRIHHCMRTVGLAERALQIMCERATQRIA 307
Query: 348 FGRRIDSFGTIQEKLARMA-------LLHYVTESLAYMISGNMDN-GSQDYHLEAAISKV 399
F +++ + + +A LL T A+ MD GS E A+ KV
Sbjct: 308 FKKKLYAHEVVAHWIAESRIAIEKIRLL---TLKAAHS----MDTLGSAGAKKEIAMIKV 360
Query: 400 FASEAAWYVTDEAIQILGG 418
A A + D AIQ+ GG
Sbjct: 361 AAPRAVSKIVDWAIQVCGG 379
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 143 bits (363), Expect = 2e-37
Identities = 43/330 (13%), Positives = 92/330 (27%), Gaps = 45/330 (13%)
Query: 111 TLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILL 170
++ L ++G P+ GGL ++ +A + + G + + I +
Sbjct: 68 NIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSLLCTHSHQ-IAM 126
Query: 171 VGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS 230
Q +L A+ S + + + G ILNG W S
Sbjct: 127 FSKQLQDEIWLK-------------DPDATASSSIAPFGKVEEVEGG--IILNGDYGWSS 171
Query: 231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVY 290
AE V D + ++ RS IK+S + +
Sbjct: 172 GCDHAEYAIVGFNRFDADGNKI-----YSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLK 224
Query: 291 YEDVKVPVENVLG--GVGNGFKVAMQILNNGRF-----------GMAAALAGTMRSVTKK 337
+V +P + + G + + + G +A G + +
Sbjct: 225 LVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFASGFSAVSLGIAERMIEA 284
Query: 338 AVDHATQRVQ--FGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNG-------SQ 388
+ RV+ G + ++A +L + ++
Sbjct: 285 FKEKQRNRVRAYTGANVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLNHQYPNK 344
Query: 389 DYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ ++ +A + D + G
Sbjct: 345 ETLAFWRTNQAYAVKMCIEAVDRLMAAAGA 374
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
3u33_A*
Length = 541
Score = 139 bits (351), Expect = 4e-35
Identities = 60/261 (22%), Positives = 102/261 (39%), Gaps = 29/261 (11%)
Query: 172 GNPEQKAKYLPRVSTGKEFAAF----CLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKI 227
P +Y + G + +TE GSD S TRA DG Y L G K
Sbjct: 157 TTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDG-SYRLVGHKW 215
Query: 228 WISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVER-----SFGGVTSGPPEKKMGIK 282
+ S ++ V AQT ++ F V R + + K+G +
Sbjct: 216 FFSVPQ-SDAHLVLAQTA----------GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNR 264
Query: 283 ASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHA 342
++ + EV ++D + +LG G G ++ +++ RF A MR A+ HA
Sbjct: 265 SNASCEVEFQDA---IGWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHA 321
Query: 343 TQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNG--SQDYHLEA---AIS 397
QR FG + ++ L+RMAL +L + ++ D +++ +
Sbjct: 322 HQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAA 381
Query: 398 KVFASEAAWYVTDEAIQILGG 418
K + EA+++LGG
Sbjct: 382 KFVICKRGMPFVAEAMEVLGG 402
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix
bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Length = 515
Score = 128 bits (322), Expect = 1e-31
Identities = 33/296 (11%), Positives = 79/296 (26%), Gaps = 35/296 (11%)
Query: 152 AVGIVLGAHQSIGFKGILLVGNP---EQKAKYLPRVSTGKEFAAFCLTEPA-----SGSD 203
+ K + + +L + +P +
Sbjct: 107 YTFTTYADDPEVWEKQSIGAEGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQ 166
Query: 204 AGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIV 263
A S R V I+NG K + F + M + ++V +
Sbjct: 167 ARSPNLRIV-EKTDDGIIVNGVKAVGTGIAFGDYMHIGCLYRPGIPG-----EQVIFAAI 220
Query: 264 ERSFGGVT---------SGPPEKKMGIK-ASNTAEVYYEDVKVPVENVL--GGVGNGFKV 311
+ GVT + P E + + + +++V +P E V G +
Sbjct: 221 PTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLY 280
Query: 312 AMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYV 371
+I + + + + + T+ ++A++ H
Sbjct: 281 PQRIFDWVHYHILIRQVLRAE-----LIVGLAILITEHIGTSKLPTVSARVAKLVAFHLA 335
Query: 372 TESLAYMISGNMDNGSQDYH----LEAAISKVFASEAAWYVTDEAIQILGGINLLL 423
++ + + L + + V E + + G +L++
Sbjct: 336 MQAHLIASEETGFHTKGGRYKPNPLIYDFGRAHFLQNQMSVMYELLDLAGRSSLMI 391
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8
center, oxygnase component, 4- hydroxyphenylacetate
3-monooxygenase; 1.60A {Thermus thermophilus} PDB:
2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Length = 481
Score = 111 bits (277), Expect = 6e-26
Identities = 51/359 (14%), Positives = 98/359 (27%), Gaps = 34/359 (9%)
Query: 81 LKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYA 140
+ +V + +D +DP + L E G+ + +DL G +A
Sbjct: 35 FRGIVRTMAALYDLQHDPRYREVLTYEEEGKRHGMS---FLIPKTKEDLKRRGQAYKLWA 91
Query: 141 RMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEP-- 198
+ G + + E Y + LT P
Sbjct: 92 DQNLGMMGRSPDYLNAVVMAYAASAD--YFGEFAENVRNYYRYLRDQDLATTHALTNPQV 149
Query: 199 -----ASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGK 253
SG I V+ K ++ G+++ + E++ + +
Sbjct: 150 NRARPPSGQPDPYIPVG-VVKQTEKGIVVRGARMTATFPLADEVLIFPSILLQAGSE--- 205
Query: 254 VVDKVTAFIVERSFGGVTSGPPEKKMGIKAS-----------NTAEVYYEDVKVPVENVL 302
AF + S G+ E +G + V ++DV VP E V
Sbjct: 206 --KYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVF 263
Query: 303 GGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKL 362
GN G A +++ +A + G D +G +QEK+
Sbjct: 264 IL-GNVELCNNAYGATGALNHMAHQVVALKTAKTEAFLGVAALMAEGIGADVYGHVQEKI 322
Query: 363 ARMALLHYVTESLAYMISGNMDNGSQDYH----LEAAISKVFASEAAWYVTDEAIQILG 417
A + + + + ++ + + QI
Sbjct: 323 AEIIVYLEAMRAFWTRAEEEAKENAYGLLVPDRGALDGARNLYPRLYPRIREILEQIGA 381
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 102 bits (255), Expect = 2e-23
Identities = 48/330 (14%), Positives = 92/330 (27%), Gaps = 45/330 (13%)
Query: 111 TLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILL 170
+++ L + G F L P+ GG + V + + G V + + L
Sbjct: 40 SMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIGVHNW-HLAL 98
Query: 171 VGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS 230
Q+ + S + + + G Y +NG+ W S
Sbjct: 99 FSQQAQEDVWGNDTDVR-------------ISSSYAPMGAGQVVDGG--YTVNGAWAWSS 143
Query: 231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVY 290
A + +F++ R +G++ + + V
Sbjct: 144 GCDHASWAVLGGPVIKDGRPVD-----FVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVV 196
Query: 291 YEDVKVPVENVLGGVGNGFKVAMQILNNGR------------FGMAAALAGTMRSVTKKA 338
EDV VP VL A + N ++A + G
Sbjct: 197 VEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTISAPIVGMAYGAYDAH 256
Query: 339 VDHATQRVQ---FGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDN-------GSQ 388
V+H +RV+ G + + ++A + +
Sbjct: 257 VEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGEEVPF 316
Query: 389 DYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ L A +V A+ A D+ + G
Sbjct: 317 ELRLRARRDQVRATGRAISSIDKLFESSGA 346
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes,
beta-strands, lyase; HET: FAD; 1.60A {Clostridium
aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Length = 490
Score = 101 bits (252), Expect = 9e-23
Identities = 29/267 (10%), Positives = 66/267 (24%), Gaps = 36/267 (13%)
Query: 179 KYLPRVSTGKEFAAFCLTEPASGSDAGSIKTR------AVLSPDGKHYILNGSKIWISNG 232
+YL + +T+P + ++ ++ G+K +
Sbjct: 133 EYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGS 192
Query: 233 GFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKAS-------- 284
+ + + + D +F G+ + +
Sbjct: 193 INSHEHIIMPTIAMTEADK----DYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDL 248
Query: 285 -------NTAEVYYEDVKVPVENVL--GGVGNGFKVAMQILNNGRFGMAAALAGTMRSVT 335
A V +++V +P + + + + R G V
Sbjct: 249 GNKQFGGQEALVVFDNVFIPNDRIFLCQEYDFAGMMVERFAGYHRQSYGGCKVGVGDVVI 308
Query: 336 KKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYH---- 391
A +++KL M L+ S + +
Sbjct: 309 GAA-----ALAADYNGAQKASHVKDKLIEMTHLNETLYCCGIACSAEGYPTAAGNYQIDL 363
Query: 392 LEAAISKVFASEAAWYVTDEAIQILGG 418
L A + K + + + A I GG
Sbjct: 364 LLANVCKQNITRFPYEIVRLAEDIAGG 390
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 85.6 bits (212), Expect = 7e-18
Identities = 51/332 (15%), Positives = 94/332 (28%), Gaps = 47/332 (14%)
Query: 111 TLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILL 170
L D GA L P+ GG + ++A V V D A G V G
Sbjct: 53 AAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDGASGWVTGIV---------- 102
Query: 171 VGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS 230
G + + +E + + A G Y+L G + S
Sbjct: 103 -GVHPWELAFADPQ-VQEEIWGEDNDTWMASP--YAPMGVATPVDGG--YVLKGRWSFSS 156
Query: 231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVT----SGPPEKKMGIKASNT 286
+ + A V D + G I+ R+ + +G++ + +
Sbjct: 157 GTDHCQWAFLGA--MVGDGEGGIATPSSLHVILPRTDYQIVEDTWDV-----IGLRGTGS 209
Query: 287 AEVYYEDVKVPVENVL------GGVGNGFKVAMQILNNGRFG------MAAALAGTMRSV 334
++ + VP L G + L N + + AA+ G
Sbjct: 210 KDLIVDGAFVPGYRTLNAAKVMDGRAQKEAGRPEPLFNMPYSCMFPLGITAAVIGITEGA 269
Query: 335 TKKAVDHATQRVQF-GRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNG------- 386
+ RV G++I + + A + + +
Sbjct: 270 LACHIAVQKDRVAITGQKIKEDPYVLSAIGESAAEINASRVSLIETADRFYDKVDAGKEI 329
Query: 387 SQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ + +++ A+ A DE GG
Sbjct: 330 TFEERAIGRRTQIAAAWRAVRAADEIFARAGG 361
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 4e-10
Identities = 98/667 (14%), Positives = 173/667 (25%), Gaps = 224/667 (33%)
Query: 2 LKFLRVLERLEPATAKLFDVNVNTQFRRLASASAAVK----AKEEQKAA-------KESQ 50
++ +L E A FD + + + +K+ Q
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 51 SFTMNMFRGQ-LNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDS------ 103
+ F + L N F + TE + ++ T+ + E D L ND+
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQVFAKY 129
Query: 104 --------------LETVEPN---TLEGLWDLGA----FSLQVPQDLG------------ 130
L + P ++G+ LG+ +L V
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGV--LGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 131 GLG-----------LTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAK 179
L L Y +D + I L H LL K+K
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL------KSK 241
Query: 180 YLPR-------VSTGKEFAAF---C----LTEPASGSDAGSIKTRAVLSPDGKHYILNGS 225
V K + AF C T +D S T H L+
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT-------THISLDH- 293
Query: 226 KIWISNGGF--AEIMTVFAQ---TPVKD--EKTGKVVDKVTAFIVERSFGGVTSGP---- 274
+ E+ ++ + +D + + + I E + G
Sbjct: 294 ----HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES----IRDGLATWD 345
Query: 275 -------PEKKMGIKAS----NTAEV--YY-------EDVKVPVENVLGGV-GNG-FKVA 312
+ I++S AE + +P +L + +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDV 404
Query: 313 MQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRI-DSFGTIQEKLARMALLHYV 371
M ++N L S+ +K Q + I + ++ KL LH
Sbjct: 405 MVVVNK--------LHK--YSLVEK------QPKESTISIPSIYLELKVKLENEYALH-- 446
Query: 372 TESL--AYMISGNMDNGS-----QD--------YHLEAA-ISKVFASEAAWYVTDEAIQI 415
S+ Y I D+ D +HL+ + ++ ++
Sbjct: 447 -RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE- 504
Query: 416 LGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFP-YPEVLTEDQS 474
QK +S ++ N LNT Q Y + D
Sbjct: 505 -----------------------QKIRHDSTAW--NASGSILNTLQQLKFYKPYIC-DND 538
Query: 475 DTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGL 534
+ LV+ + F L +E N + + L+ A
Sbjct: 539 PKYERLVNAILDF------------LPKIEENLIC-----SKYTDLLRIALMAED---EA 578
Query: 535 IIGEVKK 541
I E K
Sbjct: 579 IFEEAHK 585
Score = 43.3 bits (101), Expect = 3e-04
Identities = 46/289 (15%), Positives = 79/289 (27%), Gaps = 83/289 (28%)
Query: 378 MISGNMDNGSQD---YHLEAAISKVFASEAAWYVTDEAIQI---LGGINLLLGRLASASA 431
++S D + ++ + + E D I + G L L
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKE----EIDHIIMSKDAVSGTLRLFWTL----- 71
Query: 432 AVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEV 491
K + Q F L N F + TE + ++ T+ + E
Sbjct: 72 ------LSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPSMM------TRMYIEQ 115
Query: 492 NDPLKNDSLETVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLST 551
D L ND+ + + +Q +L++A +
Sbjct: 116 RDRLYNDN-QVFAKYNVSRLQ----PYLKLRQALLELRPAKNV----------------- 153
Query: 552 PPSLHHVVHANLAESGVL-CSKSV----VLFGEAVESLL------LKYGKGVVEEQFL-- 598
++ GVL K+ V V+ + L E L
Sbjct: 154 ------LID------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 599 LNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAER 647
L +L +T SR+ S N L S + L L + E
Sbjct: 202 LQKLLYQIDPNWT-----SRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 8e-09
Identities = 76/373 (20%), Positives = 113/373 (30%), Gaps = 145/373 (38%)
Query: 14 ATAKLFDVNVNTQFRRLASAS--------AAVKAKEEQKAAKESQSFTMN-------MF- 57
TAKL L A+ A A +SF ++ +F
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA-----ETDSWESFFVSVRKAITVLFF 305
Query: 58 ---RGQLNTNQVFPYPEVLTEDQSDTLK--------MLV------DPVTKFFDEVNDPLK 100
R + +P + D+L+ ML + V + ++ N L
Sbjct: 306 IGVRCY----EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 101 ND-----SLETVEPNTLEGLWDLGAFSLQV---PQDLGGLGLTNTQYARMVEIVGGNDLA 152
SL N GA +L V PQ L GL LT R + G D
Sbjct: 362 AGKQVEISLV----N--------GAKNLVVSGPPQSLYGLNLT----LRKAKAPSGLD-- 403
Query: 153 VGIVLGAHQS-IGFKGILLVGNPEQKAK----YLPRVSTGKEFAAF--CLTEPASGSDAG 205
QS I F E+K K +LP V+ + F L PAS
Sbjct: 404 --------QSRIPFS--------ERKLKFSNRFLP-VA-----SPFHSHLLVPAS----- 436
Query: 206 SIKTRAVLSPD--GKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIV 263
+++ D + N I I PV D G + ++ I
Sbjct: 437 -----DLINKDLVKNNVSFNAKDIQI---------------PVYDTFDGSDLRVLSGSIS 476
Query: 264 ERSFGGVTSGPPEKKMGIKASNTAEVYYED-VKVPVENVL----GGVGNGFKVAMQILNN 318
ER + P V +E + ++L GG +G V +
Sbjct: 477 ERIVDCIIRLP--------------VKWETTTQFKATHILDFGPGGA-SGLGVLTHRNKD 521
Query: 319 GRFGMAAALAGTM 331
G G+ +AGT+
Sbjct: 522 GT-GVRVIVAGTL 533
Score = 53.1 bits (127), Expect = 3e-07
Identities = 60/395 (15%), Positives = 107/395 (27%), Gaps = 161/395 (40%)
Query: 341 HATQ-RVQFGRRI----------DSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQD 389
A+Q + QF + + D T E + + L YV+ + G D
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK--FLGYVSSLVE-----PSKVGQFD 81
Query: 390 YHLEAAISKVFASEAAWYVTDEAIQILGG--INLLLGRLAS------------------A 429
L +++ F + L G I+ L +L A
Sbjct: 82 QVLNLCLTE-FEN-----------CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 430 SAAVKAKEEQ-------KAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVD 482
K ++ +A E + + +F GQ NT+
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD---------------------- 167
Query: 483 PVTKFFDEVNDPLKNDSL-ETVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKK 541
+F+E L+ L +T + I+++ L EL + +
Sbjct: 168 ---DYFEE----LR--DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-------- 210
Query: 542 RGLKSIG-LSTP---PSLHHVVHA----------NLAESGVLCSKSVVLFGEAVESL--L 585
+GL + L P P +++ LA V GE L
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 586 LKYGKGVV----------EEQFLLNRLAA--AAF-------DTY---------------- 610
+ +G+V E F ++ A F + Y
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 611 ------TMAVV--LSRAT-----RSLNKNLPSASH 632
M + L++ N +LP+
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Score = 51.6 bits (123), Expect = 8e-07
Identities = 55/345 (15%), Positives = 108/345 (31%), Gaps = 104/345 (30%)
Query: 44 KAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQS--DTLKMLVDPVTKFFDEVNDPLKN 101
+A E + + +F GQ NT+ F E + T +LV + L
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFE------ELRDLYQTYHVLVGD---LIKFSAETLSE 197
Query: 102 DSLETVEPNTL--EGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGA 159
T++ + +GL ++ + L+ P + + Y L
Sbjct: 198 LIRTTLDAEKVFTQGL-NILEW-LENPSNTP-----DKDY-----------L-------L 232
Query: 160 HQSIGFKGILLVGNPEQKAKYL--PRVS--TGKEFAAFCLTEPASGSDAGSIKTRAV-LS 214
I I ++ Q A Y+ ++ T E + + A+G G + A+ +
Sbjct: 233 SIPISCPLIGVI----QLAHYVVTAKLLGFTPGELRS--YLKGATGHSQGLVTAVAIAET 286
Query: 215 PDGKHYILNGSKI-----WISNGGFAEIMTVFAQ--TPVKDEKTGKVVDKVTAFIVERSF 267
+ + ++ K +I G P + + +E +
Sbjct: 287 DSWESFFVSVRKAITVLFFI---GVR------CYEAYPNTS-----LPPSILEDSLENNE 332
Query: 268 GGVT-----SGPPEKKMG--IKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQI-LNNG 319
G + S ++++ + +N+ +P + +I L NG
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNS--------HLPAGKQV-----------EISLVNG 373
Query: 320 R--F---GMAAALAGTMRSVTK-KAVDHATQ-RVQFGRRIDSFGT 357
G +L G ++ K KA Q R+ F R F
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Score = 37.3 bits (86), Expect = 0.019
Identities = 59/312 (18%), Positives = 104/312 (33%), Gaps = 112/312 (35%)
Query: 127 QDLG-GLGL-TNTQYARMVEIVGGNDLAVGIVLGAH--QSIGFKGILLV-GNPEQKAKYL 181
Q+ G G+ L ++ A+ V + A H + GF + +V NP +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVW-----NRA-----DNHFKDTYGFSILDIVINNPVNLTIHF 1676
Query: 182 PRVSTGKE----FAAFCLTEPASGSDAGSIKTRAV---LSPDGKHYILNGSKIWISNGGF 234
GK ++A + D G +KT + ++ Y K
Sbjct: 1677 GGEK-GKRIRENYSAMIF---ETIVD-GKLKTEKIFKEINEHSTSYTFRSEK-------- 1723
Query: 235 AEIM--TVFAQTPVKDEKTGKVVDKVTA-FIVE-------RSFGGVTSGPPEKKMGIKA- 283
++ T F Q P A ++E +S G + P + A
Sbjct: 1724 -GLLSATQFTQ-P--------------ALTLMEKAAFEDLKSKGLI---PADATF---AG 1761
Query: 284 -S---NTAEVYYEDVKVPVENVLGGV---GNGFKVAMQILNNGR--FGMAAALAGTMR-S 333
S A DV + +E+++ V G +VA+ GR +GM A G + S
Sbjct: 1762 HSLGEYAALASLADV-MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 334 VTKKAVDHATQRVQFGRRIDSFGTI--------QEKLARMALLHYVTESLAYMISGNMDN 385
+++A+ + +RV G+R I Q YV +G++
Sbjct: 1821 FSQEALQYVVERV--GKRTGWLVEIVNYNVENQQ----------YV-------AAGDLRA 1861
Query: 386 GSQDYHLEAAIS 397
L+ +
Sbjct: 1862 ------LDTVTN 1867
Score = 32.3 bits (73), Expect = 0.68
Identities = 46/283 (16%), Positives = 81/283 (28%), Gaps = 103/283 (36%)
Query: 223 NGSKIWISNGGFA--EI------MTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGP 274
N + I GG I M F KT K+ ++ +F
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMI-FETIVDGKLKTEKIFKEINEHSTSYTFRS----- 1721
Query: 275 PEKKMGIKASNT------AEV-YYEDVK----VPVENVLGG--VG--NGFKVAMQILNNG 319
+ + T E +ED+K +P + G +G A+
Sbjct: 1722 EKGLLS-ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA----AL------ 1770
Query: 320 RFGMAAALAGTM------RSVTK--KAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYV 371
A+LA M V + A R + GR ++G
Sbjct: 1771 -----ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR--SNYG--------------- 1808
Query: 372 TESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGI----NL-LLGR- 425
MI+ N ++ F+ EA YV + + G + N + +
Sbjct: 1809 ------MIAINP----------GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
Query: 426 ---------LASASAAVKAKEEQK--AAKESQSFTMNMFRGQL 457
L + + + + QK + +S ++ G L
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 28.5 bits (63), Expect = 9.6
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 578 GEAVESLLLKYGKGVVEEQFLL-NRLAAAAF---DTYTMAVVLSRATRSLNKNLPSASHE 633
+ L L +G +E L+ A + + L T + +
Sbjct: 3 AYSTRPLTLSHGS--LEHVLLVPTASFFIASQLQEQFNKI--LPEPTEGFAADDEPTTPA 58
Query: 634 QLLAELWCYEAAERVSQNLGALNSGKKL------DSYTKLGDI 670
+L+ + Y ++ +G + L + Y + DI
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil,
protein transpor; 2.10A {Salmonella typhimurium}
Length = 150
Score = 30.6 bits (69), Expect = 0.81
Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 30/145 (20%)
Query: 330 TMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGS-- 387
T++ + +K VD A + G +E+L L+ Y E + + + + +
Sbjct: 12 TLKDLAEKEVDDAAR--LLGEMRRGCQQAEEQLKM--LIDYQNEYRSNLNTDMGNGIASN 67
Query: 388 --QDYH-----LEAAIS-----------KVFASEAAWYVTDEAIQILGGINLLLGRLASA 429
+Y LE AI KV + +W E Q L L R +A
Sbjct: 68 RWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWR---EKKQRLQAWQTLQDRQTAA 124
Query: 430 SAAVKAKEEQKAAKESQSFTMNMFR 454
+ + + +QK E F
Sbjct: 125 ALLAENRMDQKKMDE---FAQRAAM 146
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant,
membrane binding, calcium binding, hydrolase; 2.5A
{Clostridium absonum} SCOP: a.124.1.1 b.12.1.3
Length = 370
Score = 31.1 bits (69), Expect = 1.3
Identities = 15/150 (10%), Positives = 38/150 (25%), Gaps = 1/150 (0%)
Query: 366 ALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGR 425
+HY + + N+ H++ + + + + +
Sbjct: 123 QGMHYFGDLNTPYHAANVTAVDSPGHVKFE-TYAEERKDTYRLDTTGYNTDDAFYKDTLK 181
Query: 426 LASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVT 485
+ + K + A K + + + + + Q L +
Sbjct: 182 NDNFNEWSKGYCKYWAKKAKNLYYSHATMSNSWDDWEYAASHGVGNAQKGVAGYLYRFLN 241
Query: 486 KFFDEVNDPLKNDSLETVEPNTLEGIQYAG 515
++ D E V +Q AG
Sbjct: 242 DVSNKDAVDKDYDLNEIVVMIKTADVQDAG 271
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 30.0 bits (68), Expect = 2.5
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 24/54 (44%)
Query: 199 ASGSDAGSIK---------------TRAVL----SPDGKHYILNGS-----KIW 228
+G + G++ + V +P ++ S KIW
Sbjct: 225 VTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW 278
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 29.0 bits (64), Expect = 5.1
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 17/88 (19%)
Query: 202 SDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTA- 260
+DAG +++P G+ + + ++ + D TG+ + ++
Sbjct: 30 ADAGPTPMVPMVAPGGR-------IAYATVNKSESLVKI-------DLVTGETLGRIDLS 75
Query: 261 --FIVERSFGGVTSGPPEKKMGIKASNT 286
+S G P K + I S
Sbjct: 76 TPEERVKSLFGAALSPDGKTLAIYESPV 103
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 29.0 bits (65), Expect = 6.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 322 GMAAALAGTMRSVT 335
G AA AG R+++
Sbjct: 380 GAAAFTAGVTRALS 393
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene
regulation, NUCL protein, gene regulation,nuclear
protein; NMR {Homo sapiens}
Length = 85
Score = 26.9 bits (60), Expect = 6.9
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 6 RVLERLEPATAKLFDVNVNTQFRRLASASAAVKAKEEQKAAKE 48
+ L+ + P+ A+ + V V + R+ + E AA +
Sbjct: 27 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMD 69
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 2.00A {Thermotoga maritima} SCOP:
a.149.1.1 d.50.1.1
Length = 252
Score = 28.3 bits (64), Expect = 7.5
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 6 RVLERLEPATAKLFDVNVNTQFRRLASASAAVKAKEEQKAAKE 48
++ + ++F V V + +A+ K + E++AA+
Sbjct: 200 ILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARI 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.368
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,014,682
Number of extensions: 627751
Number of successful extensions: 1495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1321
Number of HSP's successfully gapped: 73
Length of query: 677
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 577
Effective length of database: 3,909,693
Effective search space: 2255892861
Effective search space used: 2255892861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)