RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2177
(677 letters)
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 167 bits (423), Expect = 3e-48
Identities = 79/236 (33%), Positives = 126/236 (53%), Gaps = 13/236 (5%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLW----DLGAFSLQVPQD 128
L+E+Q + L + KF E P + + E L W +LG + P
Sbjct: 8 LSEEQ----RQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQ 63
Query: 129 LGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGK 188
GG GL ++ ++E + AVG+ GAH ++ ++ GN QK KYLP++ +G+
Sbjct: 64 YGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGE 123
Query: 189 EFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKD 248
A ++EP +GSD S+K +A G HYILNG+K WI+NG A+++ V+A+T +
Sbjct: 124 YIGALAMSEPNAGSDVVSMKLKAE--KKGNHYILNGNKFWITNGPDADVLIVYAKTDLAA 181
Query: 249 EKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGG 304
+ +TAFIVE+ G ++ K+G++ SNT E+ +ED K+P N+LG
Sbjct: 182 VPASR---GITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGH 234
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 231
Score = 147 bits (371), Expect = 5e-41
Identities = 74/243 (30%), Positives = 126/243 (51%), Gaps = 14/243 (5%)
Query: 66 VFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSL 123
V+ E L E +ML F ++ P+ + D + ++ + +LG ++
Sbjct: 1 VYQSVE-LPETH----QMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAM 55
Query: 124 QVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPR 183
VP++L G GL Y+ +E + + G+++ + S+ IL G+ +QK +++
Sbjct: 56 DVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITP 115
Query: 184 VSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQ 243
+ G + F L+EP +GSDAG+ T A +G ++LNG+K WI+N A VFA
Sbjct: 116 FTNGDKIGCFALSEPGNGSDAGAASTTAR--EEGDSWVLNGTKAWITNSWEASATVVFAS 173
Query: 244 TPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLG 303
T + G ++AF+V G+T G E K+GI+AS+TA + +ED ++P EN+LG
Sbjct: 174 TDRSRQNKG-----ISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLG 228
Query: 304 GVG 306
G
Sbjct: 229 EPG 231
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM
domains {Pig (Sus scrofa) [TaxId: 9823]}
Length = 231
Score = 137 bits (344), Expect = 2e-37
Identities = 79/234 (33%), Positives = 111/234 (47%), Gaps = 11/234 (4%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
LTE Q K KF E P+ + D L+ W+LG + +P+ G
Sbjct: 6 LTEQQ----KEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFG 61
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
GLGL + E + V + A+ I+ GN +Q+ KYL R++
Sbjct: 62 GLGLGIIDSCLITEELAYGCTGVQTAIEANTLGQVPLII-GGNYQQQKKYLGRMTEEPLM 120
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEK 250
A+C+TEP +GSD IKT+A G YI+NG K+WI+NGG A + A++ +
Sbjct: 121 CAYCVTEPGAGSDVAGIKTKAE--KKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 178
Query: 251 TGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGG 304
T FIVE GV G E MG + S+T + +EDV+VP ENVL G
Sbjct: 179 PAS--KAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG 230
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 231
Score = 135 bits (339), Expect = 1e-36
Identities = 73/234 (31%), Positives = 109/234 (46%), Gaps = 15/234 (6%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
L E+Q K F P + D E + + LG + + D+G
Sbjct: 10 LNEEQ----KEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVG 65
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G GL+ + + E + + + H + I GN EQ+ K+ P + T ++F
Sbjct: 66 GSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAW-MIDSFGNEEQRHKFCPPLCTMEKF 124
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEK 250
A++CLTEP SGSDA S+ T A G HYILNGSK +IS G ++I V +T K
Sbjct: 125 ASYCLTEPGSGSDAASLLTSAK--KQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGPK 182
Query: 251 TGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGG 304
++ +VE+ G++ G EKK+G + T V +ED VPV N +G
Sbjct: 183 ------GISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGS 230
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 233
Score = 131 bits (330), Expect = 2e-35
Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 9/233 (3%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
++ + ++ P +F P + D + + L + G F VP+ G
Sbjct: 6 EGAEE----RQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYG 61
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G GL+ +ARMVE + D A+ + + +H S+ ILL G+ QK +LP++++G+
Sbjct: 62 GAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEAL 121
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEK 250
A+ LTEP SGSDA ++KT+A + LNG+K +I+ G A + V A+T
Sbjct: 122 GAWGLTEPGSGSDAAALKTKAE--KVEGGWRLNGTKQFITQGSVAGVYVVMARTD-PPPS 178
Query: 251 TGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLG 303
+ ++AF R G+ G E+K+G+ AS+TA++ ED+ VP E +LG
Sbjct: 179 PERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLG 231
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM
domains {Thermus thermophilus [TaxId: 274]}
Length = 227
Score = 129 bits (323), Expect = 2e-34
Identities = 85/233 (36%), Positives = 124/233 (53%), Gaps = 14/233 (6%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFSLQVPQDLG 130
LTE+Q + L +F EV P+ + D E V +E L ++G + +P++ G
Sbjct: 5 LTEEQ----RQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
Query: 131 GLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEF 190
G+GL + E + + + + +G +LL G EQK ++L ++
Sbjct: 61 GMGLKMLDEVIVGEELAYACMGIYTI-PMASDLGITPVLLAGTEEQKERFLRPLTEKPAL 119
Query: 191 AAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEK 250
AAF L+EP +GSDA ++KTRA+ G HY+LNG+K+WISNGG AE + VFA +
Sbjct: 120 AAFALSEPGNGSDAAALKTRAI--RQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRH 177
Query: 251 TGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLG 303
G A +VER G + KMG +AS T E+ +EDVKVPVEN LG
Sbjct: 178 KGV-----VALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLG 225
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 128 bits (323), Expect = 2e-34
Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 14/236 (5%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVE-PNTLEGLWDLGAFSLQVPQDLGG 131
LT D+ ++ D + E P + + + G
Sbjct: 14 LTTDE----ILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 69
Query: 132 LGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFA 191
G+++ Y + + D + S+ I G+ EQ+ KYLP+++ G+
Sbjct: 70 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 129
Query: 192 AFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKT 251
F LTEP SGSD S++TRA + K Y LNG+K WI+N A++ V+A+
Sbjct: 130 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCED----- 184
Query: 252 GKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGN 307
+ F++E+ G+++ + K ++AS T + + V+VP ENVL G +
Sbjct: 185 ----GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASS 236
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 267
Score = 115 bits (288), Expect = 3e-29
Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 24/235 (10%)
Query: 89 TKFFDEVNDPLKNDSLETVEPN---TLEGLWDLGAF-SLQVPQDLGGLGLTNTQYARMVE 144
T+ E+ + + ND E T +++ S + + + G+++ + ++
Sbjct: 30 TRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVKKSATMVKKMREYGISDPE--EIMW 87
Query: 145 IVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDA 204
L H + +L EQ+ ++ + + TE G+
Sbjct: 88 FKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHL 147
Query: 205 GSIKTRAVLSPDGKHYILN-----GSKIWISNG-GFAEIMTVFAQTPVKDEKTGKVVDKV 258
++T A P + +ILN K W + V AQ + E G +
Sbjct: 148 RGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYG-----L 202
Query: 259 TAFIV-------ERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVG 306
AF+V + G+T G K G + + + ++ ++P EN+L
Sbjct: 203 HAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYA 257
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
{Megasphaera elsdenii [TaxId: 907]}
Length = 232
Score = 113 bits (284), Expect = 3e-29
Identities = 83/236 (35%), Positives = 111/236 (47%), Gaps = 15/236 (6%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPL--KNDSLETVEPNTLEGLWDLGAFS---LQVPQ 127
LT+ Q + + F ++ P + D + ++ L LG +
Sbjct: 5 LTDIQ----QDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYG 60
Query: 128 DLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTG 187
G G Y VE + D V I L A S+ I G QK K+L + G
Sbjct: 61 GSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEG 120
Query: 188 KEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVK 247
+ AF LTEP +G+DA +T A + DG Y LNGSKI+I+NGG A+I VFA T
Sbjct: 121 TKLGAFGLTEPNAGTDASGQQTIATKNDDG-TYTLNGSKIFITNGGAADIYIVFAMTDKS 179
Query: 248 DEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLG 303
G +TAFI+E G T G E KMGI S T E+ ++DVKVP EN+LG
Sbjct: 180 KGNHG-----ITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLG 230
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 271
Score = 109 bits (272), Expect = 4e-27
Identities = 37/238 (15%), Positives = 81/238 (34%), Gaps = 30/238 (12%)
Query: 89 TKFFDEVNDPLKNDSLETVEPN---TLEGLWDLGAF-SLQVPQDLGGLGLTNTQYARMVE 144
+ D + + +D + + + L+ + + L L + R+
Sbjct: 31 FEVSDRIARLVASDPVFEKSNRARLSRKELFKSTLRKCAHAFKRIIELRLNEEEAGRLRH 90
Query: 145 IVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDA 204
+ + H + I G EQ+ K+L + + + TE GS+
Sbjct: 91 FID-----QPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNV 145
Query: 205 GSIKTRAVLSPDGKHYILNGSKI-----WISNGG-FAEIMTVFAQTPVKDEKTGKVVDKV 258
++T A L P ++++ W G + V+A+ + G +
Sbjct: 146 QGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYG-----I 200
Query: 259 TAFIVE-------RSFGGVTSGPPEKKMGIK---ASNTAEVYYEDVKVPVENVLGGVG 306
FIV+ +T G KMG + + + ++ V++P + +L +
Sbjct: 201 HGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLS 258
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM
domains {Clostridium aminobutyricum [TaxId: 33953]}
Length = 275
Score = 99.3 bits (247), Expect = 1e-23
Identities = 26/243 (10%), Positives = 61/243 (25%), Gaps = 33/243 (13%)
Query: 85 VDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVE 144
++ V ++ DP + L T + N + + A Q DL +
Sbjct: 39 INCVRMTYELAQDP-QYADLMTTKSNLIGKTINRFANLHQSTDDLRKKVKMQRLLGQKTA 97
Query: 145 IVGGNDLAVGIVLGAHQSIGFKGILLVGNP---EQKAKYLPRVSTGKEFAAFCLTEPASG 201
+ + I + +YL + +T+P
Sbjct: 98 SCFQRCVGMDAFNAVF--STTYEIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGD 155
Query: 202 SDAGS-------IKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKV 254
+ R V ++ G+K + + + + +
Sbjct: 156 RGLAPSAQKDPDLFLRIV-EKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMTEADK--- 211
Query: 255 VDKVTAFIVERSFGGVTSGPPEKKMGIKASNT---------------AEVYYEDVKVPVE 299
D +F G+ + + A V +++V +P +
Sbjct: 212 -DYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPND 270
Query: 300 NVL 302
+
Sbjct: 271 RIF 273
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum
[TaxId: 5507]}
Length = 259
Score = 86.8 bits (213), Expect = 1e-19
Identities = 38/259 (14%), Positives = 82/259 (31%), Gaps = 33/259 (12%)
Query: 73 LTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNT--------LEGLWDLGAFSLQ 124
L+ Q F + V + + + G Q
Sbjct: 5 LSPSQ----LEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQ 60
Query: 125 VPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRV 184
VP LGG + + ++E + + A I ++G ++L +P + K+L
Sbjct: 61 VPIPLGGTMESLVHESIILEELFAVEPATSIT-IVATALGLMPVILCDSPSLQEKFLKPF 119
Query: 185 STGKEFA--AFCLTEPASGSDAGSIKTRAVLSP---DGKHYILNGSKIWISNGGFAE--- 236
+G+ + +EP ++ + + G ++++G K+W SN G +
Sbjct: 120 ISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKG 179
Query: 237 --IMTVFAQT----PVKDEKTGKVVDKVTAFIVERSFGGVTSGP------PEKKMGIKAS 284
+ V + + ++ +V R + G +
Sbjct: 180 ADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITT 239
Query: 285 NTAEVYYEDVKVPVENVLG 303
+ + + VP EN+L
Sbjct: 240 SGPHTRFTEFHVPHENLLC 258
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase,
C-domain {Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 79.2 bits (194), Expect = 6e-18
Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 306 GNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARM 365
G GFK+AMQ LN R +AA G R +A +A +R FG I +F IQ KL M
Sbjct: 1 GEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDM 60
Query: 366 ALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ Y + D G H +AI+K +ASE A+ ++AIQI GG
Sbjct: 61 LIGIETARMYTYYAAWLADQGLPHAH-ASAIAKAYASEIAFEAANQAIQIHGG 112
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 73.5 bits (179), Expect = 5e-16
Identities = 30/113 (26%), Positives = 54/113 (47%)
Query: 306 GNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARM 365
G GF +A++ LN GR +A+ G + DH R QFG + S +Q LA M
Sbjct: 1 GQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADM 60
Query: 366 ALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
A + + + +D +++K+FA++ + + ++A+Q+ GG
Sbjct: 61 ATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGG 113
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus
[TaxId: 1912]}
Length = 210
Score = 74.8 bits (182), Expect = 7e-16
Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 13/205 (6%)
Query: 102 DSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQ 161
D+ + + L L G +V + GGLGL + + VG +
Sbjct: 18 DTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLC--SSLRSVMTS 75
Query: 162 SIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYI 221
+ + + T + AA +E +GSD +++TR DG +
Sbjct: 76 QGMAAWTVQRLGDAGQRATFLKELTSGKLAAVGFSERQAGSDLSAMRTRVR--LDGDTAV 133
Query: 222 LNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGI 281
++G K+W + +A+ + VF +V GV K G
Sbjct: 134 VDGHKVWTTAAAYADHLVVFGLQED---------GSGAVVVVPADTPGVRVERVPKPSGC 184
Query: 282 KASNTAEVYYEDVKVPVENVLGGVG 306
+A+ A+++ + V+VP VL G G
Sbjct: 185 RAAGHADLHLDQVRVPAGAVLAGSG 209
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain
{Megasphaera elsdenii [TaxId: 907]}
Length = 151
Score = 70.0 bits (170), Expect = 1e-14
Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 306 GNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARM 365
G GFK+AM L+ GR G+AA G + AV+++ QRVQFG+ + F +I KLA M
Sbjct: 1 GKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADM 60
Query: 366 ALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ +L Y + G + + ++AAI+K AS+ A VT EA+QI GG
Sbjct: 61 KMQIEAARNLVYKAACKKQEG-KPFTVDAAIAKRVASDVAMRVTTEAVQIFGG 112
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 153
Score = 68.8 bits (167), Expect = 2e-14
Identities = 45/113 (39%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 306 GNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARM 365
G GF +++L+ GR G+AA G ++ A+ +A R FGR I F + KLA
Sbjct: 1 GKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEA 60
Query: 366 ALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
A L + D G + + LEAA +K+FASEAA DEAIQILGG
Sbjct: 61 ATELEAARLLYLKAAELKDAG-RPFTLEAAQAKLFASEAAVKACDEAIQILGG 112
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3
and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 189
Score = 68.7 bits (167), Expect = 5e-14
Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 18/127 (14%)
Query: 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFG-------RRIDSFGTIQEKL 362
++ + R + A + + A ++ R QFG ++ + T Q +L
Sbjct: 3 QLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRL 62
Query: 363 ARMALLHYVTESLAYMISGNMDNGSQD-----------YHLEAAISKVFASEAAWYVTDE 411
+ Y + + + ++ H A K + A +E
Sbjct: 63 FPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEE 122
Query: 412 AIQILGG 418
++ GG
Sbjct: 123 CRKLCGG 129
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II,
domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 183
Score = 66.4 bits (161), Expect = 3e-13
Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 18/121 (14%)
Query: 316 LNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGR-------RIDSFGTIQEKLARMALL 368
+ R + A ++ A+ ++ R Q +I F T Q KL +
Sbjct: 1 MVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLAT 60
Query: 369 HYVTESLAYMISGNMDNG-----------SQDYHLEAAISKVFASEAAWYVTDEAIQILG 417
Y + + + H A K F + A +E G
Sbjct: 61 AYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACG 120
Query: 418 G 418
G
Sbjct: 121 G 121
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase,
C-domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 154
Score = 60.8 bits (146), Expect = 1e-11
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 306 GNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARM 365
G GFK+AM + R +AA G + +A +A +R FG+ + I LA M
Sbjct: 1 GAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADM 60
Query: 366 ALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLL 422
A+ + + +D+G + A+I+K +A++ A + +A+Q+ GG
Sbjct: 61 AMKVELARLSYQRAAWEIDSG-RRNTYYASIAKAYAADIANQLATDAVQVFGGNGFN 116
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 59.7 bits (143), Expect = 3e-11
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Query: 308 GFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMAL 367
G V M L+ R +A G M++V + + R FG++I F +Q K+A M
Sbjct: 2 GVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYT 61
Query: 368 LHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
Y ++ D G + A ++++E A V + IQ GG
Sbjct: 62 RLMACRQYVYNVAKACDEGHCTAK-DCAGVILYSAECATQVALDGIQCFGG 111
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 153
Score = 58.1 bits (139), Expect = 1e-10
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 308 GFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMAL 367
GFK+AMQ L+ GR G+A+ G ++ AV +A R FG + IQ KLA MAL
Sbjct: 2 GFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMAL 61
Query: 368 LHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
L + + DN + + E+A++K+ ASEAA ++ +AIQILGG
Sbjct: 62 ALESARLLTWRAAMLKDN-KKPFTKESAMAKLAASEAATAISHQAIQILGG 111
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces
hygroscopicus [TaxId: 1912]}
Length = 153
Score = 50.4 bits (119), Expect = 5e-08
Identities = 27/108 (25%), Positives = 43/108 (39%)
Query: 311 VAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHY 370
+ L GR +A G +R+ AV HA R QFGR + + +A +
Sbjct: 5 LVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQ 64
Query: 371 VTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGG 418
+ + S + D GS + ++K A+E A A Q+L
Sbjct: 65 IAARVCEYASDHWDEGSPEMVPATILAKHVAAERAAAGAATAAQVLAS 112
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 46.9 bits (110), Expect = 8e-07
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 1/108 (0%)
Query: 310 KVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLH 369
LNN R+G+A + G A +A R+QFG + IQ+KLA M
Sbjct: 2 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 61
Query: 370 YVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILG 417
+ + D + ++ K A + +A +LG
Sbjct: 62 TLGLHACLQLGRLKDQ-DKAAPEMVSLLKRNNCGKALDIARQARDMLG 108
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium
oxysporum [TaxId: 5507]}
Length = 170
Score = 43.4 bits (101), Expect = 2e-05
Identities = 17/119 (14%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Query: 303 GGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRR-IDSFGTIQEK 361
G G + A GT R+ ++A+ A + G + I ++ +K
Sbjct: 2 GLKAQGL--VETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADK 59
Query: 362 LARMALLHYVTESLAYMISGNMDNGSQDYHLEA---AISKVFASEAAWYVTDEAIQILG 417
L + + L + +++ + ++ ++ +K++ ++ A +A++ +G
Sbjct: 60 LIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVG 118
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 470
Score = 31.6 bits (70), Expect = 0.33
Identities = 19/171 (11%), Positives = 42/171 (24%), Gaps = 11/171 (6%)
Query: 62 NTNQVFPYPEVLTEDQSDTLKMLVDPVTK-----FFDEVNDPLKNDSLETVEPNTLEGLW 116
++ ++ S D + + + + P+
Sbjct: 269 TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328
Query: 117 DLGAFSLQVP--QDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNP 174
D +F + + + I G +GI + + G P
Sbjct: 329 DGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMP 388
Query: 175 EQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGS 225
+ L ++ CL+ + S + K+Y L S
Sbjct: 389 GGR--NLYKIQLSDYTKVTCLSCELNPERCQY--YSVSFSKEAKYYQLRCS 435
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 92
Score = 26.6 bits (59), Expect = 3.3
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 519 RELQKAFKNPTAHLGLIIGEVKKRGL 544
+QK F P + L +V RG
Sbjct: 62 AVVQKRFGFPEGSVELYAEKVATRGS 87
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp.,
UC5319 [TaxId: 1931]}
Length = 311
Score = 27.8 bits (61), Expect = 3.8
Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 7/87 (8%)
Query: 299 ENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRV-QFGRRIDSFGT 357
E G N + + + + + + + + G
Sbjct: 225 EEARGEQNNMVMILRR-EHGWSKSRSVSHMQNEVRARLEQYLLLESCLPKVGEIYQL--- 280
Query: 358 IQEKLARMALLHYVTESLAYMISGNMD 384
+ R AL Y T+++ +I G+ D
Sbjct: 281 --DTAEREALERYRTDAVRTVIRGSYD 305
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter
vinelandii [TaxId: 354]}
Length = 233
Score = 27.0 bits (59), Expect = 6.1
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 341 HATQRVQFGRRIDSFGTIQEKLARMALLH 369
A V+ GR+ID F LA L
Sbjct: 25 DACVAVESGRQIDRFFRNNPHLAVQYLAD 53
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 69
Score = 24.8 bits (54), Expect = 8.4
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 6 RVLERLEPATAKLFDVNVNTQFRRLASASAAVKAKEEQKAAKE 48
++ + ++F V V + +A+ K + E++AA+
Sbjct: 21 ILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARI 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.368
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,313,117
Number of extensions: 105919
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 33
Length of query: 677
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 586
Effective length of database: 1,158,166
Effective search space: 678685276
Effective search space used: 678685276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.1 bits)