BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2178
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 4/155 (2%)
Query: 120 KPLDESLQKWMDGAPE-GVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWEND 178
KPL + + ++ + E GV+ FSLG+ + + + R A A++PQ +VLW+++ +
Sbjct: 5 KPLPKEXEDFVQSSGENGVVVFSLGSXVSNXT--EERANVIASALAQIPQ-KVLWRFDGN 61
Query: 179 VMEGLGENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLN 238
+ LG N RL KW+PQ D+L HPK + FI GG + EA ++G+ + IP+FADQ N
Sbjct: 62 KPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
Query: 239 CQRVGKIKTGIVLEYEDLNEEIIFNALKLVLEDPQ 273
+ +++ + + NALK V+ DP
Sbjct: 122 IAHXKARGAAVRVDFNTXSSTDLLNALKRVINDPS 156
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 292 GVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGLGENIRLQKWMPQ 351
GV+ FSLG+ + + + R A A++PQ +VLW+++ + + LG N RL KW+PQ
Sbjct: 22 GVVVFSLGSXVSNXT--EERANVIASALAQIPQ-KVLWRFDGNKPDTLGLNTRLYKWIPQ 78
Query: 352 QDILG 356
D+LG
Sbjct: 79 NDLLG 83
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 23/217 (10%)
Query: 54 MRTLDKEQAILNQNLDEKYRKRSLREI--YFDSAKDSFMFSF---DSRITGYARPMQRKL 108
+R D ++ I+ NL+ + R L + A F+ SF D +T + +
Sbjct: 182 VRFRDLQEGIVFGNLNSLF-SRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTY 240
Query: 109 VEVGPLHLVDPKPL----DESLQKWMDGAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAFA 164
+ +GP +L+ P P+ LQ + P V+Y S GT L+A +
Sbjct: 241 LNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEA-S 299
Query: 165 RLPQYRVLWKWEN----DVMEGLGENIR----LQKWMPQQDILAHPKVKLFIMQGGLQSL 216
R+P +W + + EG E R + W PQ ++LAH V F+ G SL
Sbjct: 300 RVP---FIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSL 356
Query: 217 QEAFHYGVKLICIPMFADQDLNCQRVGKI-KTGIVLE 252
E+ GV LIC P F DQ LN + V + + G+ +E
Sbjct: 357 WESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIE 393
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 89/204 (43%), Gaps = 11/204 (5%)
Query: 77 LREIYFDSAKDSFMFSFDSRITGYARPMQRKLVEVGPLH-LVDPKPLDESLQKWMDGAPE 135
L E D+ F+ + + I R Q K VG + V P D S Q +G +
Sbjct: 194 LEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYTFVGPTYGDRSHQGTWEGPGD 253
Query: 136 G--VIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGLGE---NIRLQ 190
G V+ +LG+ T DF R L A L + VL LGE N+ +
Sbjct: 254 GRPVLLIALGSAF--TDHLDFYRTC-LSAVDGLDWHVVLSVGRFVDPADLGEVPPNVEVH 310
Query: 191 KWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQRVGKIKTGIV 250
+W+PQ DIL K FI G+ S EA V ++ +P A+Q +N +R+ ++ G
Sbjct: 311 QWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRH 368
Query: 251 LEYEDLNEEIIFNALKLVLEDPQV 274
+ + + E + A+ V DP V
Sbjct: 369 IPRDQVTAEKLREAVLAVASDPGV 392
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 17/177 (9%)
Query: 108 LVEVGPLHLVDP--KPLDE-SLQKWMD-GAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAF 163
L+ VGP +L P K DE +W+D V+Y S G+ + + A ++
Sbjct: 242 LLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVV---TPPPHELTALAESL 298
Query: 164 ARLPQYRVLWKWENDVMEGLGENI--------RLQKWMPQQDILAHPKVKLFIMQGGLQS 215
+ +W + D E L + ++ W PQ +IL H V +F+ G S
Sbjct: 299 EEC-GFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNS 357
Query: 216 LQEAFHYGVKLICIPMFADQDLNCQRVGKI-KTGIVLEYEDLNEEIIFNALKLVLED 271
+ E GV +I P F DQ LN + + G+ ++ L +E I AL+L +
Sbjct: 358 VLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSS 414
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 7/151 (4%)
Query: 126 LQKWMDGAPEGV-IYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGLG 184
+ +W+ PE + +LG + + S+G + L A + ++ ++ +EG+
Sbjct: 257 VPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDV-DAEIIATFDAQQLEGVA 315
Query: 185 ---ENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQR 241
+N+R ++P +L P + GG S A +GV + +P D + QR
Sbjct: 316 NIPDNVRTVGFVPMHALL--PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQR 373
Query: 242 VGKIKTGIVLEYEDLNEEIIFNALKLVLEDP 272
+ GI L +L + + ++K VL+DP
Sbjct: 374 TQEFGAGIALPVPELTPDQLRESVKRVLDDP 404
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 135 EGVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEG-LGE---NIRLQ 190
E V+ SLG+ T F R+ ++AF LP + ++ + V LGE N+ +
Sbjct: 232 EKVVLVSLGSAF--TKQPAFYREC-VRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVH 288
Query: 191 KWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQRVGKIKTGIV 250
W+PQ IL + LF+ G QE +I +P DQ N + +
Sbjct: 289 DWVPQLAILR--QADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARK 346
Query: 251 LEYEDLNEEIIFNALKLVLEDPQVFK 276
L E+ +++ +++DP+V +
Sbjct: 347 LATEEATADLLRETALALVDDPEVAR 372
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 189 LQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQRV 242
+ W PQ +L HP + F+ G S E+ GV ++C P FADQ +C+ +
Sbjct: 357 IASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFI 410
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 43/227 (18%)
Query: 47 MAYYWLHMRTLDKEQAILNQNLDEKYRKRSLREIYFDSAKDSFMFSFDSRITGYARPMQR 106
+AYY L R D + I+N D L + D+ ++ D +I
Sbjct: 200 IAYYKLAERFRDTKGIIVNTFSD-------LEQSSIDA-----LYDHDEKIP-------- 239
Query: 107 KLVEVGPLHLVDPKP---LDES----LQKWMDGAPE-GVIYFSLGTNMKGTSMGDFRRKA 158
+ VGPL + +P LD++ + KW+D P+ V++ G+ G S G + +
Sbjct: 240 PIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGS--MGVSFGPSQIRE 297
Query: 159 FLKAFARLPQYRVLWK--WENDVM-EGLGENIRLQK------WMPQQDILAHPKVKLFIM 209
+ R LW E V EG E + L+ W PQ ++LAH + F+
Sbjct: 298 IALGL-KHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVS 356
Query: 210 QGGLQSLQEAFHYGVKLICIPMFADQDLNCQRVGK---IKTGIVLEY 253
G S+ E+ +GV ++ P++A+Q LN R+ K + G+ ++Y
Sbjct: 357 HCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDY 403
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 43/227 (18%)
Query: 47 MAYYWLHMRTLDKEQAILNQNLDEKYRKRSLREIYFDSAKDSFMFSFDSRITGYARPMQR 106
+AYY L R D + I+N D L + D+ ++ D +I
Sbjct: 200 IAYYKLAERFRDTKGIIVNTFSD-------LEQSSIDA-----LYDHDEKIP-------- 239
Query: 107 KLVEVGPLHLVDPKP---LDES----LQKWMDGAPE-GVIYFSLGTNMKGTSMGDFRRKA 158
+ VGPL + +P LD++ + KW+D P+ V++ G+ G S G + +
Sbjct: 240 PIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGS--MGVSFGPSQIRE 297
Query: 159 FLKAFARLPQYRVLWK--WENDVM-EGLGENIRLQK------WMPQQDILAHPKVKLFIM 209
R LW E V EG E + L+ W PQ ++LAH + F+
Sbjct: 298 IALGLKH-SGVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVS 356
Query: 210 QGGLQSLQEAFHYGVKLICIPMFADQDLNCQRVGK---IKTGIVLEY 253
G S+ E+ +GV ++ P++A+Q LN R+ K + G+ ++Y
Sbjct: 357 HCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDY 403
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 157 KAFLKAFARLPQYRVLWK---WENDVMEGLGENIRLQKWMPQQDILAHPKVKLFIMQGGL 213
+A +AFA P + V + V+ L N+ +W+P +LAH + L G
Sbjct: 250 RACAQAFADTPWHVVXAIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAHARACL--THGTT 307
Query: 214 QSLQEAFHYGVKLICIPMFADQDL-NCQRVGKIKTGIVLEYEDLNEEIIFNALKLVLED 271
++ EAF GV L+ +P FA + + +RV ++ G VL + L I A++ + D
Sbjct: 308 GAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAAD 366
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 137 VIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGLGE---NIRLQKWM 193
++Y +LGT+ GT +A + A L ++ + + GLGE N+RL+ W+
Sbjct: 244 LVYLTLGTSSGGTVE---VLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWV 300
Query: 194 PQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQ 235
PQ +L H V L + GG + A GV + P D
Sbjct: 301 PQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDS 340
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 293 VIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGLGE---NIRLQKWM 349
++Y +LGT+ GT +A + A L ++ + + GLGE N+RL+ W+
Sbjct: 244 LVYLTLGTSSGGTVE---VLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWV 300
Query: 350 PQQDIL 355
PQ +L
Sbjct: 301 PQAALL 306
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 192 WMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNC 239
W PQ +LAHP F+ G S E+ G+ LI P++A+Q +N
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNA 393
>pdb|2CB9|A Chain A, Crystal Structure Of The Thioesterase Domain Of The
Fengycin Biosynthesis Cluster
pdb|2CBG|A Chain A, Crystal Structure Of The Pmsf-Inhibited Thioesterase
Domain Of The Fengycin Biosynthesis Cluster
Length = 244
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 256 LNEEIIFNALKLVLEDPQVFKSGWMSLQKWMDGAPEGVIYFSLGTNMKGTSMGDFRRK 313
+NE I + + + Q SG M LQKW D A EG ++ K G+F K
Sbjct: 156 INEGRIKSNIHFIEAGIQTETSGAMVLQKWQDAAEEGYAEYTGYGAHKDMLEGEFAEK 213
>pdb|2HPI|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-Ray Structure Of Dna Polymerase Iii
pdb|2HPM|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-ray Structure Of Dna Polymerase Iii
Length = 1220
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 58 DKEQAILNQNLDEKYRKRSLREI-YFDSAKDSFMFSFDSRITGYARPMQRKLVEVGPLHL 116
D+E+ + Q + E+Y + + +I F S +R+ G +L ++ P+
Sbjct: 470 DRERDRVIQYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQF 529
Query: 117 VDPKPLDESLQ 127
PKPL E++Q
Sbjct: 530 GKPKPLQEAIQ 540
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,447,977
Number of Sequences: 62578
Number of extensions: 492559
Number of successful extensions: 942
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 22
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)