RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2178
(357 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 215 bits (549), Expect = 8e-70
Identities = 54/155 (34%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
Query: 119 PKPLDESLQKWMDGAPE-GVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWEN 177
KPL + ++ ++ + E GV+ FSLG+ + +M + R A A++PQ +VLW+++
Sbjct: 4 AKPLPKEMEDFVQSSGENGVVVFSLGSMVS--NMTEERANVIASALAQIPQ-KVLWRFDG 60
Query: 178 DVMEGLGENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDL 237
+ + LG N RL KW+PQ D+L HPK + FI GG + EA ++G+ ++ IP+FADQ
Sbjct: 61 NKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPD 120
Query: 238 NCQRVGKIKTGIVLEYEDLNEEIIFNALKLVLEDP 272
N + + +++ ++ + NALK V+ DP
Sbjct: 121 NIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDP 155
Score = 111 bits (279), Expect = 1e-29
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 282 LQKWMDGAPE-GVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGLG 340
++ ++ + E GV+ FSLG+ + +M + R A A++PQ +VLW+++ + + LG
Sbjct: 11 MEDFVQSSGENGVVVFSLGSMVS--NMTEERANVIASALAQIPQ-KVLWRFDGNKPDTLG 67
Query: 341 ENIRLQKWMPQQDILG 356
N RL KW+PQ D+LG
Sbjct: 68 LNTRLYKWIPQNDLLG 83
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 142 bits (360), Expect = 6e-39
Identities = 48/294 (16%), Positives = 89/294 (30%), Gaps = 36/294 (12%)
Query: 4 AQYFSI--ISWPFNNPENPAYVPVIWTANTDSMTFWQRVTNTVQAMAYYWLHMRTLDKEQ 61
A+ + + +S N Y + +R WL + +
Sbjct: 121 ARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQTERGRAYYARFEA-WLKENGITE-- 177
Query: 62 AILNQNLDEKYRKRSLREIYFDSAKDSFMFSFDSRITGYARPMQRKLVEVGPLHLVDPKP 121
+ + R + + D R + VG +
Sbjct: 178 ------HPDTFASHPPRSLVLIPK--ALQPHAD-------RVDEDVYTFVGACQGDRAEE 222
Query: 122 LDESLQKWMDGAPE-GVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLW----KWE 176
W A V+ SLG+ T F R ++AF LP + ++ K
Sbjct: 223 GG-----WQRPAGAEKVVLVSLGSAF--TKQPAFYR-ECVRAFGNLPGWHLVLQIGRKVT 274
Query: 177 NDVMEGLGENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQD 236
+ L +N+ + W+PQ IL + F+ G QE +I +P DQ
Sbjct: 275 PAELGELPDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQF 332
Query: 237 LNCQRVGKIKTGIVLEYEDLNEEIIFNALKLVLEDPQVFKSGWMSLQKWMDGAP 290
N + + L E+ +++ +++DP+ +Q M
Sbjct: 333 GNADMLQGLGVARKLATEEATADLLRETALALVDDPE-VARRLRRIQAEMAQEG 385
Score = 62.9 bits (153), Expect = 4e-11
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 285 WMDGAPE-GVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLW----KWENDVMEGL 339
W A V+ SLG+ T F R ++AF LP + ++ K + L
Sbjct: 225 WQRPAGAEKVVLVSLGSAF--TKQPAFYR-ECVRAFGNLPGWHLVLQIGRKVTPAELGEL 281
Query: 340 GENIRLQKWMPQQDILGT 357
+N+ + W+PQ IL
Sbjct: 282 PDNVEVHDWVPQLAILRQ 299
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 124 bits (313), Expect = 3e-32
Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 14/223 (6%)
Query: 75 RSLREIYFDSAKDSFMFSFDSRITGYARPMQRKLVEVGP-LHLVDPKPLDESLQKWMDGA 133
L E D+ F+ + + I R Q K VG V P D S Q +G
Sbjct: 192 AFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYTFVGPTYGDRSHQGTWEGP 251
Query: 134 PEG--VIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKW----ENDVMEGLGENI 187
+G V+ +LG+ T DF R L A L V+ + + + N+
Sbjct: 252 GDGRPVLLIALGSAF--TDHLDFYRTC-LSAVDGLDW-HVVLSVGRFVDPADLGEVPPNV 307
Query: 188 RLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQRVGKIKT 247
+ +W+PQ DIL K FI G+ S EA V ++ +P A+Q +N +R+ ++
Sbjct: 308 EVHQWVPQLDIL--TKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGL 365
Query: 248 GIVLEYEDLNEEIIFNALKLVLEDPQVFKSGWMSLQKWMDGAP 290
G + + + E + A+ V DP ++++ + A
Sbjct: 366 GRHIPRDQVTAEKLREAVLAVASDPG-VAERLAAVRQEIREAG 407
Score = 52.8 bits (127), Expect = 8e-08
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 285 WMDGAPE-GVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKW----ENDVMEGL 339
W V+ +LG+ T DF R L A L V+ + + +
Sbjct: 248 WEGPGDGRPVLLIALGSAF--TDHLDFYRTC-LSAVDGLDW-HVVLSVGRFVDPADLGEV 303
Query: 340 GENIRLQKWMPQQDIL 355
N+ + +W+PQ DIL
Sbjct: 304 PPNVEVHQWVPQLDIL 319
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 113 bits (285), Expect = 2e-28
Identities = 51/274 (18%), Positives = 97/274 (35%), Gaps = 20/274 (7%)
Query: 23 VPVIWTANTDSMTFWQRVTNTVQAMAYYWLHMRTLDKEQAILNQNLDEKYRKRSLREIYF 82
P + + + + + + +L KY + + Y+
Sbjct: 125 RPAVRLTGG--FAANEHYSLFKELWKSNGQRHPADVEAVHSVLVDLLGKYGVDTPVKEYW 182
Query: 83 DSAKDSFMFSFDSRITGYARPMQRKLVEVGPLHLVDPKPLDESLQKWMDGAPE-GVIYFS 141
D + + +A + VGP + W P+ V+ S
Sbjct: 183 DEIEGLTIVFLPKSFQPFAETFDERFAFVGP-----TLTGRDGQPGWQPPRPDAPVLLVS 237
Query: 142 LGTNMKGTSMGDFRRKAFLKAFARLPQYRVLW----KWENDVMEGLGENIRLQKWMPQQD 197
LG +F R +AFA P V+ + V+ L N+ +W+P
Sbjct: 238 LGNQF--NEHPEFFRAC-AQAFADTPW-HVVMAIGGFLDPAVLGPLPPNVEAHQWIPFHS 293
Query: 198 ILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFA-DQDLNCQRVGKIKTGIVLEYEDL 256
+LAH + + G ++ EAF GV L+ +P FA + + +RV ++ G VL + L
Sbjct: 294 VLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQL 351
Query: 257 NEEIIFNALKLVLEDPQVFKSGWMSLQKWMDGAP 290
I A++ + D + +Q+ + +
Sbjct: 352 EPASIREAVERLAADSA-VRERVRRMQRDILSSG 384
Score = 49.3 bits (118), Expect = 1e-06
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 285 WMDGAPE-GVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLW----KWENDVMEGL 339
W P+ V+ SLG +F R +AFA P V+ + V+ L
Sbjct: 224 WQPPRPDAPVLLVSLGNQF--NEHPEFFRAC-AQAFADTPW-HVVMAIGGFLDPAVLGPL 279
Query: 340 GENIRLQKWMPQQDILGT 357
N+ +W+P +L
Sbjct: 280 PPNVEAHQWIPFHSVLAH 297
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 109 bits (275), Expect = 4e-27
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 14/166 (8%)
Query: 111 VGPLHLVDPKPLDESLQKWMDGAPEG-VIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQY 169
VGP D + L E W A + V+ SLGT F R +AF P +
Sbjct: 227 VGPCFD-DRRFLGE----WTRPADDLPVVLVSLGTTF--NDRPGFFRDC-ARAFDGQPWH 278
Query: 170 RVL---WKWENDVMEGLGENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKL 226
V+ + + + L N+ +W+P +L + + + GG+ +L EA ++G L
Sbjct: 279 VVMTLGGQVDPAALGDLPPNVEAHRWVPHVKVL--EQATVCVTHGGMGTLMEALYWGRPL 336
Query: 227 ICIPMFADQDLNCQRVGKIKTGIVLEYEDLNEEIIFNALKLVLEDP 272
+ +P D +RV ++ G VL E + + + A+ V DP
Sbjct: 337 VVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADP 382
Score = 46.2 bits (110), Expect = 9e-06
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 285 WMDGAPEG-VIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVL---WKWENDVMEGLG 340
W A + V+ SLGT F R +AF P + V+ + + + L
Sbjct: 240 WTRPADDLPVVLVSLGTTF--NDRPGFFRDC-ARAFDGQPWHVVMTLGGQVDPAALGDLP 296
Query: 341 ENIRLQKWMPQQDIL 355
N+ +W+P +L
Sbjct: 297 PNVEAHRWVPHVKVL 311
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 102 bits (257), Expect = 1e-24
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 14/167 (8%)
Query: 111 VGPLHLVDPKPLDESLQKWMDGAPEG--VIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQ 168
+ P+ + L W+ ++Y +LGT+ + R A + A L
Sbjct: 220 LRPVPFAEQGDLPA----WLSSRDTARPLVYLTLGTSS--GGTVEVLRAA-IDGLAGLDA 272
Query: 169 YRVLWKWENDVMEGLGE---NIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVK 225
++ + + GLGE N+RL+ W+PQ +L P V L + GG + A GV
Sbjct: 273 DVLVASGPSLDVSGLGEVPANVRLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVP 330
Query: 226 LICIPMFADQDLNCQRVGKIKTGIVLEYEDLNEEIIFNALKLVLEDP 272
+ P D N Q V + G L ++++ + + A K +L +
Sbjct: 331 QLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEE 377
Score = 41.6 bits (98), Expect = 2e-04
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 285 WMDGAPEG--VIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGLGE- 341
W+ ++Y +LGT+ + R A + A L ++ + + GLGE
Sbjct: 234 WLSSRDTARPLVYLTLGTSS--GGTVEVLRAA-IDGLAGLDADVLVASGPSLDVSGLGEV 290
Query: 342 --NIRLQKWMPQQDILGT 357
N+RL+ W+PQ +L
Sbjct: 291 PANVRLESWVPQAALLPH 308
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 101 bits (252), Expect = 6e-24
Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 11/169 (6%)
Query: 111 VGPLHL--VDPKPLDESLQKWMDGAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQ 168
VG ++ P + E L D + +LG + + S+G + L A +
Sbjct: 244 VGMRYVDYNGPSVVPEWLH---DEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDA 300
Query: 169 YRVLWKWENDVMEGLGE---NIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVK 225
+ + EG+ N+R ++P +L P + GG S A +GV
Sbjct: 301 EIIATFDAQQL-EGVANIPDNVRTVGFVPMHALL--PTCAATVHHGGPGSWHTAAIHGVP 357
Query: 226 LICIPMFADQDLNCQRVGKIKTGIVLEYEDLNEEIIFNALKLVLEDPQV 274
+ +P D + QR + GI L +L + + ++K VL+DP
Sbjct: 358 QVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAH 406
Score = 44.0 bits (104), Expect = 4e-05
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 285 WMDGAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGLGE--- 341
D + +LG + + S+G + L A + + + EG+
Sbjct: 261 LHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQL-EGVANIPD 319
Query: 342 NIRLQKWMPQQDILGT 357
N+R ++P +L T
Sbjct: 320 NVRTVGFVPMHALLPT 335
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 92.6 bits (230), Expect = 4e-21
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 10/173 (5%)
Query: 101 ARPMQRKLVEVGPLHLVDPKPLDESLQKWMD-GAPEGVIYFSLGTNMKGTSMGDFRRKAF 159
RP V+ G L D +PL L+ ++ G+P +Y G+ +
Sbjct: 188 LRPTDLGTVQTGAWILPDQRPLSAELEGFLRAGSP--PVYVGFGS----GPAPAEAARVA 241
Query: 160 LKAFARLPQY-RVLWKWENDVMEGLGENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQE 218
++A + + W G++ + + Q + +V + GG +
Sbjct: 242 IEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLF--GRVAAVVHHGGAGTTTA 299
Query: 219 AFHYGVKLICIPMFADQDLNCQRVGKIKTGIVLEYEDLNEEIIFNALKLVLED 271
G + +P ADQ RV + G+ + E + AL L
Sbjct: 300 VTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALTP 352
Score = 35.6 bits (82), Expect = 0.019
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 282 LQKWMD-GAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQY-RVLWKWENDVMEGL 339
L+ ++ G+P +Y G+ + ++A + + W
Sbjct: 213 LEGFLRAGSP--PVYVGFGS----GPAPAEAARVAIEAVRAQGRRVVLSSGWAGLGRIDE 266
Query: 340 GENIRLQKWMPQQDIL 355
G++ + + Q +
Sbjct: 267 GDDCLVVGEVNHQVLF 282
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 91.1 bits (226), Expect = 1e-20
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 12/167 (7%)
Query: 109 VEVGPLHLVDPKPLDESLQKWMDGAPEGVIYFSLGTNMKGTSMGDFRR--KAFLKAFARL 166
V+ G L D +PL L ++D P +Y G S+G + + A
Sbjct: 213 VQTGAWILPDERPLSPELAAFLDAGP-PPVYLGFG------SLGAPADAVRVAIDAIRAH 265
Query: 167 PQYRVLWK-WENDVMEGLGENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVK 225
+ +L + W + V+ G + + Q + +V I GG + A G
Sbjct: 266 GRRVILSRGWADLVLPDDGADCFAIGEVNHQVLF--GRVAAVIHHGGAGTTHVAARAGAP 323
Query: 226 LICIPMFADQDLNCQRVGKIKTGIVLEYEDLNEEIIFNALKLVLEDP 272
I +P ADQ RV ++ G+ + + + AL L
Sbjct: 324 QILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALTPE 370
Score = 35.6 bits (82), Expect = 0.021
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 282 LQKWMDGAPEGVIYFSLGTNMKGTSMGDFRR--KAFLKAFARLPQYRVLWK-WENDVMEG 338
L ++D P +Y G S+G + + A + +L + W + V+
Sbjct: 230 LAAFLDAGP-PPVYLGFG------SLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPD 282
Query: 339 LGENIRLQKWMPQQDIL 355
G + + Q +
Sbjct: 283 DGADCFAIGEVNHQVLF 299
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 89.4 bits (222), Expect = 4e-20
Identities = 22/175 (12%), Positives = 57/175 (32%), Gaps = 12/175 (6%)
Query: 109 VEVGPLHLVDPKPLDESLQKWMDGAPEG-VIYFSLGTNMKGTSMGDFRR-----KAFLKA 162
+ V ++ + W+ + + + GT + + +A +
Sbjct: 200 PGTTKMRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQE 259
Query: 163 FARLPQYRVLWKWENDVMEGLGE---NIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEA 219
+L V+ + + + L + P I+ P + + GG +
Sbjct: 260 LPKLGF-EVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIM--PACDVVVHHGGHGTTLTC 316
Query: 220 FHYGVKLICIPMFADQDLNCQRVGKIKTGIVLEYEDLNEEIIFNALKLVLEDPQV 274
GV + +P+ A+ + + + G+ + +E E + A + +D
Sbjct: 317 LSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSSY 371
Score = 33.9 bits (78), Expect = 0.068
Identities = 9/82 (10%), Positives = 24/82 (29%), Gaps = 10/82 (12%)
Query: 285 WMDGAPEG-VIYFSLGTNMKGTSMGDFRR-----KAFLKAFARLPQYRVLWKWENDVMEG 338
W+ + + + GT + + +A + +L V+ + + +
Sbjct: 220 WVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGF-EVVVAVSDKLAQT 278
Query: 339 LGE---NIRLQKWMPQQDILGT 357
L + P I+
Sbjct: 279 LQPLPEGVLAAGQFPLSAIMPA 300
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 86.0 bits (213), Expect = 7e-19
Identities = 29/187 (15%), Positives = 54/187 (28%), Gaps = 10/187 (5%)
Query: 94 DSRITGYARPMQRKLVEVGPLHLVDPKPLDESLQKWMDGAPEG-VIYFSLGTNMKGTSMG 152
D I ++ + L+ WM + + G+ + S
Sbjct: 168 DLFIDICPPSLRPANAAPARMMRHVATSRQCPLEPWMYTRDTRQRVLVTSGSRVAKESYD 227
Query: 153 DFRR--KAFLKAFARLPQYRVLWKWENDVMEGLGE---NIRLQKWMPQQDILAHPKVKLF 207
+ K R ++ + V E L R+ W P + P L
Sbjct: 228 RNFDFLRGLAKDLVRWDV-ELIVAAPDTVAEALRAEVPQARVG-WTPLDVVA--PTCDLL 283
Query: 208 IMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQRVGKIKTGIVLEYEDLNEEIIFNALKL 267
+ G S GV + IP + + +RV I L + + E I ++ +
Sbjct: 284 VHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQE 343
Query: 268 VLEDPQV 274
+
Sbjct: 344 LQAKDTY 350
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 85.7 bits (212), Expect = 1e-18
Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 6/165 (3%)
Query: 109 VEVGPLHLVDPKPLDESLQKWMDGAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQ 168
V+ G L D +PL L+ ++ A ++ G+ G + D + ++A +
Sbjct: 212 VQTGAWLLSDERPLPPELEAFLA-AGSPPVHIGFGS-SSGRGIADAAK-VAVEAIRAQGR 268
Query: 169 YRVL-WKWENDVMEGLGENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLI 227
+L W V+ ++ + Q + +V I G + A GV +
Sbjct: 269 RVILSRGWTELVLPDDRDDCFAIDEVNFQALF--RRVAAVIHHGSAGTEHVATRAGVPQL 326
Query: 228 CIPMFADQDLNCQRVGKIKTGIVLEYEDLNEEIIFNALKLVLEDP 272
IP DQ RV + G+ + E + AL VL
Sbjct: 327 VIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLAPE 371
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 84.5 bits (209), Expect = 3e-18
Identities = 29/181 (16%), Positives = 55/181 (30%), Gaps = 9/181 (4%)
Query: 100 YARPMQRKLVEVGPLHLVDPKPLDESLQKWMDGAPEG-VIYFSLGTNMKGTSMGDFRRKA 158
+Q G P + W + +G + + +A
Sbjct: 182 CPPSLQASDAPQGAPVQYVPYNGSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRA 241
Query: 159 FLKAFARLPQYRVLW---KWENDVMEGLGENIRLQKWMPQQDILAHPKVKLFIMQGGLQS 215
A + ++ L +N R+ + +P L +L I GG +
Sbjct: 242 VAAATELPGV-EAVIAVPPEHRALLTDLPDNARIAESVPLNLFL--RTCELVICAGGSGT 298
Query: 216 LQEAFHYGVKLICIPMFADQDLNCQRVGKIKTGIVLEYED--LNEEIIFNALKLVLEDPQ 273
A G+ + +P + DQ + + GI L E + E +++ VL D
Sbjct: 299 AFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTG 358
Query: 274 V 274
Sbjct: 359 F 359
Score = 38.2 bits (89), Expect = 0.003
Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 5/77 (6%)
Query: 285 WMDGAPEG-VIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLW---KWENDVMEGLG 340
W + +G + + +A A + ++ L
Sbjct: 211 WGAARTSARRVCICMGRMVLNATGPAPLLRAVAAATELPGV-EAVIAVPPEHRALLTDLP 269
Query: 341 ENIRLQKWMPQQDILGT 357
+N R+ + +P L T
Sbjct: 270 DNARIAESVPLNLFLRT 286
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 79.1 bits (195), Expect = 2e-16
Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 10/181 (5%)
Query: 96 RITGYARPMQRKLVEVGPLHLVDPKPLDESLQKWMDGAPEG-VIYFSLGTNMKGTSMGDF 154
I + + + G P L + P + ++GT
Sbjct: 192 TIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLPPVPARPEVAITMGTIELQAFGIGA 251
Query: 155 RRKAFLKAFARLPQYRVLWKWENDVMEGLGE---NIRLQKWMPQQDILAHPKVKLFIMQG 211
+ A + + + + LG N+R W P +L + G
Sbjct: 252 VE-PIIAAAGEVDA-DFVLALGDLDISPLGTLPRNVRAVGWTPLHTLL--RTCTAVVHHG 307
Query: 212 GLQSLQEAFHYGVKLICIPMFADQDLNCQRVGKIKTGIVLEYEDLNEEIIFNALKLVLED 271
G ++ A G+ + P DQ + R + GI L +++ + L+ ++ D
Sbjct: 308 GGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTS--DKVDADLLRRLIGD 365
Query: 272 P 272
Sbjct: 366 E 366
Score = 38.3 bits (89), Expect = 0.003
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 6/84 (7%)
Query: 278 GWMSLQKWMDGAPEG-VIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVM 336
G L + P + ++GT + A + + + +
Sbjct: 218 GGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVE-PIIAAAGEVDA-DFVLALGDLDI 275
Query: 337 EGLGE---NIRLQKWMPQQDILGT 357
LG N+R W P +L T
Sbjct: 276 SPLGTLPRNVRAVGWTPLHTLLRT 299
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 68.4 bits (168), Expect = 7e-13
Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 26/199 (13%)
Query: 92 SFD---SRITGYARPMQRKLVEVGPLHLVDPKPL---DESLQKWMDGAPEG-VIYFSLGT 144
SF+ +T + + + +GP +L+ P P+ +W+ V+Y S GT
Sbjct: 221 SFEELDDSLTNDLKSKLKTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGT 280
Query: 145 NMKGTSMGDFRRKAFLKAFAR---LPQYRVLW----KWENDVMEGLGENIRLQ----KWM 193
T+ A + A + + +W K + EG E R W
Sbjct: 281 ---VTTPP----PAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWA 333
Query: 194 PQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQRVGKI-KTGIVLE 252
PQ ++LAH V F+ G SL E+ GV LIC P F DQ LN + V + + G+ +E
Sbjct: 334 PQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIE 393
Query: 253 YEDLNEEIIFNALKLVLED 271
+ + + +L
Sbjct: 394 GGVFTKSGLMSCFDQILSQ 412
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 65.3 bits (160), Expect = 6e-12
Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 26/199 (13%)
Query: 92 SFD---SRITGYARPMQRKLVEVGPLHLVDPKPL---DESLQKWMDGAPEG-VIYFSLGT 144
SF I + L+ VGP +L P+ + +W+D V+Y S G
Sbjct: 223 SFATIHPLIENELNSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFG- 281
Query: 145 NMKGTSMGDFRRKAFLKAFAR---LPQYRVLW----KWENDVMEGLGENIRLQ----KWM 193
S+ L A A + +W + + +G E + + W
Sbjct: 282 -----SVVTPPPHE-LTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWA 335
Query: 194 PQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQRVGKI-KTGIVLE 252
PQ +IL H V +F+ G S+ E GV +I P F DQ LN + + G+ ++
Sbjct: 336 PQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD 395
Query: 253 YEDLNEEIIFNALKLVLED 271
L +E I AL+L +
Sbjct: 396 NGVLTKESIKKALELTMSS 414
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 60.7 bits (148), Expect = 2e-10
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 111 VGPLHLVDPKPLDESLQ-------KWMDGAPEG-VIYFSLGTNMKGTSMGDFRRKAFLKA 162
VGPL + +P + Q KW+D P+ V++ G SMG + ++
Sbjct: 244 VGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFG------SMGVSFGPSQIRE 297
Query: 163 FAR---LPQYRVLW--KWENDVM-EGLGENIRLQ------KWMPQQDILAHPKVKLFIMQ 210
A R LW E V EG E + L+ W PQ ++LAH + F+
Sbjct: 298 IALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSH 357
Query: 211 GGLQSLQEAFHYGVKLICIPMFADQDLNC 239
G S+ E+ +GV ++ P++A+Q LN
Sbjct: 358 CGWNSILESMWFGVPILTWPIYAEQQLNA 386
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 55.0 bits (133), Expect = 2e-08
Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 39/191 (20%)
Query: 102 RPMQRKLVEVGPLHLVDPKPLDESLQ---------------KWMDGAPEG-VIYFSLGTN 145
+ +GPL + + W++ G V+Y + G
Sbjct: 246 SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFG-- 303
Query: 146 MKGTSMGDFRRKAFLKAFAR---LPQYRVLW------------KWENDVMEGLGENIRLQ 190
S + L FA + LW + ++ + + +
Sbjct: 304 ----STTVMTPEQ-LLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIA 358
Query: 191 KWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQRVGKI-KTGI 249
W PQ +L HP + F+ G S E+ GV ++C P FADQ +C+ + + G+
Sbjct: 359 SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGM 418
Query: 250 VLEYEDLNEEI 260
++ EE+
Sbjct: 419 EIDTNVKREEL 429
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 52.2 bits (126), Expect = 1e-07
Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 44/164 (26%)
Query: 111 VGPLHLVDPKPLDESLQ----KWMDGAPEG-VIYFSLGTNMKGTSMGDFRRKAFLKAFAR 165
VGPL + + ++ + KW+D P G V+Y S G S G + L A
Sbjct: 239 VGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFG------SGGTLTCEQ-LNELAL 291
Query: 166 ---LPQYRVLW----------------KWENDVMEGLGEN-----------IRLQKWMPQ 195
+ R LW + D + L I W PQ
Sbjct: 292 GLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIP--FWAPQ 349
Query: 196 QDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNC 239
+LAHP F+ G S E+ G+ LI P++A+Q +N
Sbjct: 350 AQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNA 393
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 1e-07
Identities = 56/427 (13%), Positives = 127/427 (29%), Gaps = 131/427 (30%)
Query: 1 MATAQYFSIISWPFNNPENPAYVPVIWTANTDSMTFWQRVTNTVQAMAYYWLHMRTLDKE 60
++ + II + + + WT + Q+ V + Y +L
Sbjct: 46 LSKEEIDHIIMSK--DAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYKFLMSP----- 97
Query: 61 QAILNQNLDEKYRKRSLREIYFDSAKDSFMFSFDSRITGYARPMQRKLVEVGPLHLVDPK 120
+ + R+ S+ + +D + ++ +
Sbjct: 98 -------IKTEQRQPSMMTRMYIEQRD---------------RLYNDNQVFAKYNVSRLQ 135
Query: 121 PLDESLQKWMDGA-PEG--VIYFSLGTNMKGTSMGDFRRKAFL-------KAFARLPQYR 170
P + L++ + P +I G + G+ G K ++ ++
Sbjct: 136 PYLK-LRQALLELRPAKNVLID---G--VLGS--G----KTWVALDVCLSYKVQCKMDFK 183
Query: 171 VLW------KWENDVMEGLGENIRLQ---KWMPQQDILAHPKVKLFIMQGGLQSLQEAFH 221
+ W V+E L + + Q W + D ++ K+++ +Q L+ L ++
Sbjct: 184 IFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 222 YGVKLI---------CIPMFADQDLNCQ-----R--------VGKIKTGIVLE------Y 253
Y L+ F +L+C+ R T I L+
Sbjct: 243 YENCLLVLLNVQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 254 EDLNEEIIFNALKLVLED---------PQV----------FKSGWMSLQKWMDGAPEGVI 294
D + ++ L +D P+ + W + + +I
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 295 YFSLGTNMKGTSMGDFRRKAFLKAFARLPQ--------YRVLW--KWENDVMEGLGENIR 344
SL ++ RK F + P ++W ++DVM + + +
Sbjct: 360 ESSL-NVLEPAEY----RKMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 345 ---LQKW 348
++K
Sbjct: 414 YSLVEKQ 420
Score = 46.0 bits (108), Expect = 2e-05
Identities = 33/210 (15%), Positives = 67/210 (31%), Gaps = 36/210 (17%)
Query: 43 TVQAMAYYWLHMRTLDKEQAILNQNLDEKYRKRSLREIYFDSAKDSFMFSFDSRITGYAR 102
++ W + D ++N K K SL E K + I
Sbjct: 388 PTILLSLIWFDVIKSDVMV-VVN-----KLHKYSLVE------KQPKESTI--SIPSIYL 433
Query: 103 PMQRKLVEVGPLH--LVDPKPLDESLQKWMDGAP---EGVIYFSLGTNMKGTSMGD---- 153
++ KL LH +VD + ++ D P + Y +G ++K +
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 154 FRRK----AFLKAFARLPQYRVLWKWENDVMEGLGENIRLQKWMPQQDILAHPKVKL--- 206
FR FL+ ++ W ++ L + + ++ D V
Sbjct: 493 FRMVFLDFRFLE--QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 207 FIMQGGLQSLQEAFHYGVKLICIPMFADQD 236
F+ + + + L+ I + A+ +
Sbjct: 551 FLPKIEENLICSKY---TDLLRIALMAEDE 577
Score = 34.8 bits (79), Expect = 0.043
Identities = 49/414 (11%), Positives = 96/414 (23%), Gaps = 170/414 (41%)
Query: 50 YWLHMRTLDKEQAILN--QNL-----------------------DEKYRKRS-------- 76
+WL+++ + + +L Q L + R
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 77 -----LREIYFDSAKDSFMF-------SFDSRITGYARPMQRKLVEVGPLHLVDPKPLDE 124
L + A ++F + ++T + + + H DE
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD--HHSMTLTPDE 302
Query: 125 SLQKWMDGAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGLG 184
+ + D R + P+ + +
Sbjct: 303 VKS-----------LLLKYLDCR---PQDLPR----EVLTTNPR----------RLSIIA 334
Query: 185 ENI-----RLQKW-MPQQDILAHPKVKLFIMQGGLQSLQEA-----------FHYGVKLI 227
E+I W D L I++ L L+ A F
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTT------IIESSLNVLEPAEYRKMFDRLSVFPPSAH-- 386
Query: 228 CIPMFADQDLNCQRVGKIKTGIVLE-------YEDLNEEIIFNALK---LVLEDPQVFKS 277
IP I+L D ++ N L LV + P+
Sbjct: 387 -IPT-----------------ILLSLIWFDVIKSD--VMVVVNKLHKYSLVEKQPKESTI 426
Query: 278 GWMSLQ---------------------------KWMDGAP---EGVIYFSLGTNMKGTSM 307
S+ D P + Y +G ++K
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 308 GD----FRRK----AFLKAFARLPQYRVLWKWENDVMEGLGENIRLQKWMPQQD 353
+ FR FL+ ++ W ++ L + + ++ D
Sbjct: 487 PERMTLFRMVFLDFRFLE--QKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 7e-04
Identities = 46/274 (16%), Positives = 91/274 (33%), Gaps = 91/274 (33%)
Query: 47 MAYYWLHMRTLDKEQAILNQNLDEKYRKR---SLREIYFDSAKDSFMFSFDS----RIT- 98
M Y +T Q + N+ D ++ S+ +I ++ + F RI
Sbjct: 1633 MDLY----KTSKAAQDVWNR-ADNHFKDTYGFSILDIVINNPV-NLTIHFGGEKGKRIRE 1686
Query: 99 GYARPMQRKLVEVGPLHLVDPKPLDESLQKWMDGAPEGVIYFSLGTNMKGTS-----MGD 153
Y+ + +V+ K ++E + + +G++ T +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA--------TQFTQPAL-- 1736
Query: 154 FRRKAFLKAFARLPQYRVLWKW----ENDVMEG--LGE--------NIRLQKWMPQQDIL 199
L A + L + G LGE ++ M + +
Sbjct: 1737 -----TLMEKA---AFEDLKSKGLIPADATFAGHSLGEYAALASLADV-----MSIESL- 1782
Query: 200 AHPKVKLFIMQGGLQSLQEAF--------HYGVKLI----CIPMFADQDLN--CQRVGKI 245
V++ +G ++Q A +YG+ I F+ + L +RVGK
Sbjct: 1783 ----VEVVFYRG--MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK- 1835
Query: 246 KTGIVLEYEDLNEEII-FNALKLVLEDPQVFKSG 278
+TG ++ EI+ +N E+ Q +G
Sbjct: 1836 RTGWLV-------EIVNYNV-----ENQQYVAAG 1857
Score = 32.7 bits (74), Expect = 0.25
Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 85/230 (36%)
Query: 61 QAILNQNLDEKYRKRSLREIYFDSAKDSFMFSFDSRITGYARPMQRKLVEVGPLHLVDPK 120
Q + +E LR++Y + + R ++ + +
Sbjct: 163 QGNTDDYFEE------LRDLYQTYH--VLVGDLIKFSAETLSELIRTTLDAEKVF---TQ 211
Query: 121 PLDESLQKWMDG---APE--------------GVI---YFSLGTNMKGTSMGDFRR---- 156
L+ + +W++ P+ GVI ++ + + G + G+ R
Sbjct: 212 GLN--ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 157 --------------------KAFLKAFARLPQYRVL-WKWENDVMEGLGENIRLQKWMPQ 195
++F + + VL + +G +R + P
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKA--ITVLFF---------IG--VRCYEAYPN 316
Query: 196 QDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQRVGKI 245
+ P + L+++ + PM + +L ++V
Sbjct: 317 TSL--PPSI-----------LEDSLENNEGVPS-PMLSISNLTQEQVQDY 352
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.36
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 7/27 (25%)
Query: 120 KPLDESLQKWM-DGAPEGVIYFSLGTN 145
K L SL+ + D AP +L
Sbjct: 23 KKLQASLKLYADDSAP------ALAIK 43
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET:
VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A
3gd1_I 1c9i_A 1c9l_A
Length = 365
Score = 28.0 bits (62), Expect = 4.8
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 116 LVDPKPLDESLQKWM--DGA----PEGVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQY 169
++D +++ + D A VI G ++ + + K+ +KA +
Sbjct: 53 IIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQ---IFNIEMKSKMKAH-TMTDD 108
Query: 170 RVLWKWENDVMEGLGENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQ 217
WKW + L + + W + + + P VK+F L Q
Sbjct: 109 VTFWKWISLNTVALVTDNAVYHWSMEGE--SQP-VKMFDRHSSLAGCQ 153
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller
coated-PITS, membrane PR; 2.60A {Rattus norvegicus}
SCOP: a.118.1.4 b.69.6.1
Length = 494
Score = 28.0 bits (62), Expect = 6.0
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 137 VIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGLGENIRLQKWMPQQ 196
VI G ++ + + K+ +KA + WKW + L + + W +
Sbjct: 79 VIALKAGKTLQ---IFNIEMKSKMKAH-TMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134
Query: 197 DILAHPKVKLFIMQGGLQSLQ 217
+ + P VK+F L Q
Sbjct: 135 E--SQP-VKMFDRHSSLAGCQ 152
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 27.3 bits (60), Expect = 10.0
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 137 VIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGLGENIRLQKWMPQQ 196
VI G ++ + + K+ +KA + WKW + L + + W +
Sbjct: 79 VIALKAGKTLQ---IFNIEMKSKMKAH-TMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134
Query: 197 DILAHPKVKLFIMQGGLQSLQ 217
+ + P VK+F L Q
Sbjct: 135 E--SQP-VKMFDRHSSLAGCQ 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.435
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,759,288
Number of extensions: 349343
Number of successful extensions: 666
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 43
Length of query: 357
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 262
Effective length of database: 4,049,298
Effective search space: 1060916076
Effective search space used: 1060916076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)