RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2178
(357 letters)
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 104 bits (258), Expect = 2e-25
Identities = 45/276 (16%), Positives = 87/276 (31%), Gaps = 16/276 (5%)
Query: 6 YFSIISWPFNNPENPAYVPVIWTANTDSMTFWQRVTNTVQAMAYYWLHMRTLDKEQAILN 65
+ V I + + F ++ + L+ + +
Sbjct: 139 NSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRML 198
Query: 66 QNLDEKYRKRSLREIYFDSAKDSFMFSFDSRITGYARPMQRKLVEVGPLHLVDPKPLDES 125
+ + K + I D +T + + + +GP +L+ P P+ +
Sbjct: 199 HRMGQVLPKATAVFINS-------FEELDDSLTNDLKSKLKTYLNIGPFNLITPPPVVPN 251
Query: 126 LQKWMDGAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGLGE 185
+ E + + + L + +W + L E
Sbjct: 252 TTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPE 311
Query: 186 --------NIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDL 237
+ W PQ ++LAH V F+ G SL E+ GV LIC P F DQ L
Sbjct: 312 GFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRL 371
Query: 238 NCQRV-GKIKTGIVLEYEDLNEEIIFNALKLVLEDP 272
N + V ++ G+ +E + + + +L
Sbjct: 372 NGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQE 407
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 401
Score = 102 bits (254), Expect = 5e-25
Identities = 41/289 (14%), Positives = 80/289 (27%), Gaps = 19/289 (6%)
Query: 5 QYFSIISWPFNNPENPAYVPVIWTANTDSMTFWQRVTNTVQAMAYYWLHMRTLDKEQAIL 64
+ + PAY TD W+ L+ R
Sbjct: 123 YSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLWEERAARFADRYGPTLNRRR-------- 174
Query: 65 NQNLDEKYRKRSLREIYFDSAKDSFMFSFDSRITGYARPMQRKLVEVGPLHLVDPKPLDE 124
+ + +++ + + + D V+ G L D +PL
Sbjct: 175 -----AEIGLPPVEDVFGYGHGERPLLAAD--PVLAPLQPDVDAVQTGAWLLSDERPLPP 227
Query: 125 SLQKWMDGAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGLG 184
L+ ++ ++ G++ + + + W V+
Sbjct: 228 ELEAFLAAGSP-PVHIGFGSSSGRGIADAAKVAVEAIRAQG-RRVILSRGWTELVLPDDR 285
Query: 185 ENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQRVGK 244
++ + Q + V I G + A GV + IP DQ RV
Sbjct: 286 DDCFAIDEVNFQALFRR--VAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAA 343
Query: 245 IKTGIVLEYEDLNEEIIFNALKLVLEDPQVFKSGWMSLQKWMDGAPEGV 293
+ G+ + E + AL VL ++ ++ DGA
Sbjct: 344 LGIGVAHDGPTPTFESLSAALTTVLAPETRARAEAVAGMVLTDGAAAAA 392
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 99.8 bits (247), Expect = 8e-24
Identities = 44/271 (16%), Positives = 94/271 (34%), Gaps = 17/271 (6%)
Query: 12 WPFNNPENPAYVPVIWTANTDSMTFWQRVTNTVQAMAYYWLHM-RTLDKEQAILNQNLDE 70
++P + + + R TN M +++ + ++K+ IL +E
Sbjct: 170 TNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNE 229
Query: 71 KYRKRSLREIYFDSAKDSFMFSFDSRITGYARPMQRKLVEVGPLHLVDPKPLDESLQKWM 130
L ++ + + ++ ++ L K E L
Sbjct: 230 ------LESDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLE 283
Query: 131 DGAPEGVIYFSLGTNMKGT--------SMGDFRRKAFLKAFARLPQYRVLWKWENDVMEG 182
P V+Y + G+ T +K+FL + ++
Sbjct: 284 SKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNE 343
Query: 183 LGENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQRV 242
+ + + W PQ +L HP + F+ G S E+ GV ++C P FADQ +C+ +
Sbjct: 344 IADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFI 403
Query: 243 GK-IKTGIVLEYEDLNEEIIFNALKLVLEDP 272
+ G+ ++ ++ E + + V+
Sbjct: 404 CNEWEIGMEID-TNVKREELAKLINEVIAGD 433
Score = 28.2 bits (61), Expect = 1.6
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 271 DPQVFKSGWMSLQKWMDGAPEGVIYFSLGTNMKGT--------SMGDFRRKAFLKAFARL 322
D ++K L P V+Y + G+ T +K+FL
Sbjct: 268 DSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPD 327
Query: 323 PQYRVLWKWENDVMEGLGENIRLQKWMPQQDIL 355
+ ++ + + + W PQ +L
Sbjct: 328 LVIGGSVIFSSEFTNEIADRGLIASWCPQDKVL 360
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 401
Score = 97.5 bits (241), Expect = 3e-23
Identities = 42/290 (14%), Positives = 80/290 (27%), Gaps = 13/290 (4%)
Query: 5 QYFSIISWPFNNPENPAYVPVIWTANTDSMTFWQRVTNTVQAMAYYWLHMRTLDKEQAIL 64
+ I + + + P + + Q +
Sbjct: 114 EKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQWERNNQSAYQRYGGLLNSH 173
Query: 65 NQNLDEKYRKRSLREIYFDSAKDSFMFSFDSRITGYARPMQRKLVEVGPLHLVDPKPLDE 124
+ + Y D + +P V+ G L D +PL
Sbjct: 174 RDAIGLPPVEDIFTFGYTDHPWVAADPVLA-----PLQPTDLDAVQTGAWILPDERPLSP 228
Query: 125 SLQKWMDGAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQY-RVLWKWENDVMEGL 183
L ++D P +Y G+ + + A + + W + V+
Sbjct: 229 ELAAFLDAGPP-PVYLGFGSLG----APADAVRVAIDAIRAHGRRVILSRGWADLVLPDD 283
Query: 184 GENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQRVG 243
G + + Q + V I GG + A G I +P ADQ RV
Sbjct: 284 GADCFAIGEVNHQVLFGR--VAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVA 341
Query: 244 KIKTGIVLEYEDLNEEIIFNALKLVLEDPQVFKSGWMSLQKWMDGAPEGV 293
++ G+ + + + AL L ++ ++ DGA
Sbjct: 342 ELGVGVAHDGPIPTFDSLSAALATALTPETHARATAVAGTIRTDGAAVAA 391
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 91.0 bits (224), Expect = 7e-21
Identities = 39/296 (13%), Positives = 87/296 (29%), Gaps = 17/296 (5%)
Query: 5 QYFSIISWPFNNPENPAYVPVIWTANTDSMTFWQRVTNTVQAMAYYWLHMRTLDKEQAIL 64
+S + + + ++N V + A
Sbjct: 142 SNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYY 201
Query: 65 NQ-NLDEKYRKRSLREIYFDSAKDSFMFSFDSRITGYARPMQRKLVEVGPLHLVDPKPLD 123
+ + + L G + +
Sbjct: 202 KLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQH 261
Query: 124 ESLQKWMDGAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWENDVMEGL 183
+ + KW+D P+ + F G S G + + + +
Sbjct: 262 DLILKWLDEQPDKSVVFL-CFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPE 320
Query: 184 G--------ENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQ 235
G + W PQ ++LAH + F+ G S+ E+ +GV ++ P++A+Q
Sbjct: 321 GFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQ 380
Query: 236 DLNCQRV---GKIKTGIVLEYEDLNE----EIIFNALKLVLEDPQVFKSGWMSLQK 284
LN R+ + G+ ++Y ++ E I LK +++ + +++
Sbjct: 381 QLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKE 436
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 391
Score = 89.0 bits (219), Expect = 3e-20
Identities = 38/278 (13%), Positives = 83/278 (29%), Gaps = 11/278 (3%)
Query: 21 AYVPVIWTANTDSMTFWQRVTNTVQAMAYYWLHMRTLDKEQAILNQNLDEKYRKRSLREI 80
+ + Q+ A ++ + D+ + + +
Sbjct: 109 RSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRASIGLPPVEHL 168
Query: 81 YFDSAKDSFMFSFDSRITGYARPMQRKLVEVGPLHLVDPKPLDESLQKWMDGAPEGVIYF 140
+D + + RP V+ G L D +PL L+ ++ V
Sbjct: 169 -YDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDERPLSAELEAFLAAGSTPVYVG 227
Query: 141 SLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWK-WENDVMEGLGENIRLQKWMPQQDIL 199
++ K +KA + VL + W + V+ G + + + Q++
Sbjct: 228 FGSSS---RPATADAAKMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQELF 284
Query: 200 AHPKVKLFIMQGGLQSLQEAFHYGVKLICIPMFAD----QDLNCQRVGKIKTGIVLEYED 255
V I + A G+ I + D Q + RV ++ G+ ++
Sbjct: 285 GR--VAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVDGPV 342
Query: 256 LNEEIIFNALKLVLEDPQVFKSGWMSLQKWMDGAPEGV 293
+ + AL L ++ ++ DG
Sbjct: 343 PTIDSLSAALDTALAPEIRARATTVADTIRADGTTVAA 380
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 84.0 bits (206), Expect = 2e-18
Identities = 48/292 (16%), Positives = 92/292 (31%), Gaps = 35/292 (11%)
Query: 10 ISWPFNNPENPAYVPVIWTANTDSMTFWQRVTNTVQAMAYYWLHMRTLDKEQAILNQNLD 69
+S+ + P+ V + T+ + V + R D + +L+
Sbjct: 140 LSFFLHLPKLDETVSCEFRELTEPLMLPGCVPVAGKDFLDPA-QDRKDDAYKWLLHNTKR 198
Query: 70 EKYRKRSLREIYFDSAKDSFMFSFDSRITGYARPMQRKLVEVGPLHLVDPKPLDESLQKW 129
K + L +F+ ++ + + LV +G E L+
Sbjct: 199 YKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQE-AKQTEESECLKWL 257
Query: 130 MDGAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKW-------------- 175
+ V+Y S G+ ++ + A Q R LW
Sbjct: 258 DNQPLGSVLYVSFGSGG---TLTCEQLNELALGLADSEQ-RFLWVIRSPSGIANSSYFDS 313
Query: 176 -----------ENDVMEGLGENIRLQKWMPQQDILAHPKVKLFIMQGGLQSLQEAFHYGV 224
+ + W PQ +LAHP F+ G S E+ G+
Sbjct: 314 HSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGI 373
Query: 225 KLICIPMFADQDLNCQRVG-KIKTGIVLEYED---LNEEIIFNALKLVLEDP 272
LI P++A+Q +N + I+ + D + E + +K ++E
Sbjct: 374 PLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGE 425
>d1rrea_ d.14.1.10 (A:) ATP-dependent protease Lon (La), catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 182
Score = 30.1 bits (67), Expect = 0.26
Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 189 LQKWMPQQDILAH---PKVKLFIMQGGLQSLQEAFHYGVKLICIPMFADQDLNCQRVGKI 245
+ + + ++ + G + L A G+K + IP +DL + +
Sbjct: 100 TGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLE-EIPDNV 158
Query: 246 KTGI-VLEYEDLNEEIIFNALKLVLEDP 272
+ + + + E L L L++
Sbjct: 159 IADLDIHPVKRIEE-----VLTLALQNE 181
>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
[TaxId: 303]}
Length = 554
Score = 28.6 bits (64), Expect = 1.2
Identities = 34/173 (19%), Positives = 51/173 (29%), Gaps = 50/173 (28%)
Query: 21 AYVPVIWT-------ANTDSMTFWQRVTNT----VQAMAYYW-LHMRTLDKEQAILNQNL 68
Y+P WT A T+ + + VQAM + + T D I
Sbjct: 270 GYLPAGWTWEQYRDRAQTEPAAVVKAAKQSMAVHVQAMLDFQKQGVPTFDYGNNIRQMAK 329
Query: 69 DEKYRKRSLREIYFDSAKDSFMFSFDSRITGYARPMQRKLVE-VGPLHLV----DPK--- 120
+E F F + Y RP+ VGP + +
Sbjct: 330 EEGVAD---------------AFDFPGFVPAYIRPL---FCRGVGPFRWAALSGEAEDIY 371
Query: 121 ----------PLDESLQKWMDGAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAF 163
P D L +W+D A E + + G + +G R AF
Sbjct: 372 KTDAKVKELIPDDAHLHRWLDMARERISF--QGLPARICWVGLGLRAKLGLAF 422
Score = 27.5 bits (61), Expect = 3.0
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 135 EGVIYFSLGTN-----MKGTSMGDFRRKAFLKAFARLPQY----------------RVLW 173
+GV F G N + F F+ A+ R P + ++
Sbjct: 313 QGVPTFDYGNNIRQMAKEEGVADAFDFPGFVPAYIR-PLFCRGVGPFRWAALSGEAEDIY 371
Query: 174 KWENDVMEGLGENIRLQKWM 193
K + V E + ++ L +W+
Sbjct: 372 KTDAKVKELIPDDAHLHRWL 391
Score = 27.5 bits (61), Expect = 3.0
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 291 EGVIYFSLGTN-----MKGTSMGDFRRKAFLKAFARLPQY----------------RVLW 329
+GV F G N + F F+ A+ R P + ++
Sbjct: 313 QGVPTFDYGNNIRQMAKEEGVADAFDFPGFVPAYIR-PLFCRGVGPFRWAALSGEAEDIY 371
Query: 330 KWENDVMEGLGENIRLQKWM 349
K + V E + ++ L +W+
Sbjct: 372 KTDAKVKELIPDDAHLHRWL 391
>d1usra_ b.68.1.1 (A:) Paramyxovirus hemagglutinin-neuraminidase
head domain {Newcastle disease virus [TaxId: 11176]}
Length = 448
Score = 28.3 bits (63), Expect = 1.5
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 6 YFSIISWPFNNPENPAYVPVIWTANTDSMTFWQRVTNTVQAMAY 49
F + NP ++ S + RV+++ AY
Sbjct: 364 VFGTMLDSEQARLNP----ASAVFDSTSRSRITRVSSSSTKAAY 403
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase
{Agrobacterium sp. [TaxId: 361]}
Length = 303
Score = 27.7 bits (60), Expect = 2.2
Identities = 19/137 (13%), Positives = 32/137 (23%), Gaps = 2/137 (1%)
Query: 213 LQSLQEAFHYGVKLICIPMFADQDLNCQRVGKIKTGIVLEYEDLNEEIIFNALKLVLEDP 272
L L +A G I P A + + + YE + L +
Sbjct: 28 LDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAEL 87
Query: 273 QVFKSGWMSLQKWMDGAPEGVIYFSLGTNMKGTSMGDFRRKAFLKAFARLPQYRVLWKWE 332
+ + + G + + K + RK L YR E
Sbjct: 88 GIGFNLGYAELVVEGG--VKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLE 145
Query: 333 NDVMEGLGENIRLQKWM 349
E +
Sbjct: 146 KRYFEPGDLGFPVYDVD 162
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 26.2 bits (58), Expect = 6.7
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 153 DFRRKAFLKAFARLPQYRVLWKWENDVMEGL 183
+ K+ +KA + WKW + L
Sbjct: 89 NIEMKSKMKAH-TMTDDVTFWKWISLNTVAL 118
Score = 26.2 bits (58), Expect = 6.7
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 309 DFRRKAFLKAFARLPQYRVLWKWENDVMEGL 339
+ K+ +KA + WKW + L
Sbjct: 89 NIEMKSKMKAH-TMTDDVTFWKWISLNTVAL 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.435
Gapped
Lambda K H
0.267 0.0389 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,442,317
Number of extensions: 69533
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 21
Length of query: 357
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,226,816
Effective search space: 332467136
Effective search space used: 332467136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.1 bits)