Query psy2180
Match_columns 129
No_of_seqs 98 out of 138
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 18:20:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k78_A Paired box protein PAX5 99.1 1.1E-11 3.9E-16 87.8 2.5 116 8-126 10-149 (149)
2 1pdn_C Protein (PRD paired); p 99.1 4.6E-11 1.6E-15 80.2 2.3 89 14-105 1-109 (128)
3 2k27_A Paired box protein PAX- 98.6 6E-08 2E-12 69.6 5.9 93 12-107 7-119 (159)
4 1tc3_C Protein (TC3 transposas 96.5 0.0021 7.2E-08 36.0 2.8 38 30-67 5-50 (51)
5 1u78_A TC3 transposase, transp 93.9 0.042 1.4E-06 37.1 3.1 79 28-113 4-98 (141)
6 1ic8_A Hepatocyte nuclear fact 92.6 0.019 6.6E-07 44.6 -0.3 30 75-107 18-47 (194)
7 1jko_C HIN recombinase, DNA-in 84.5 0.34 1.2E-05 27.1 1.1 27 31-57 6-32 (52)
8 1uxc_A FRUR (1-57), fructose r 76.6 1.3 4.5E-05 28.2 2.0 28 30-57 29-57 (65)
9 2l8n_A Transcriptional repress 73.2 3.5 0.00012 26.3 3.4 32 26-57 30-63 (67)
10 2h8r_A Hepatocyte nuclear fact 69.4 0.83 2.8E-05 36.5 -0.4 31 75-108 19-49 (221)
11 2x48_A CAG38821; archeal virus 68.2 1.9 6.3E-05 25.2 1.1 27 31-57 14-42 (55)
12 3j20_Q 30S ribosomal protein S 62.3 6.5 0.00022 30.2 3.4 26 32-57 30-55 (158)
13 3u5c_N S27A, YS15, 40S ribosom 49.9 9 0.00031 29.2 2.3 26 32-57 30-55 (151)
14 2hsg_A Glucose-resistance amyl 43.9 19 0.00065 26.9 3.3 28 30-57 28-56 (332)
15 3hot_A Transposable element ma 43.1 5.7 0.0002 30.4 0.3 67 30-99 6-96 (345)
16 2elh_A CG11849-PA, LD40883P; s 42.7 34 0.0012 21.9 4.0 28 30-57 22-49 (87)
17 2pjp_A Selenocysteine-specific 40.5 1 3.4E-05 31.2 -4.0 63 34-99 7-90 (121)
18 2y6x_A PSB27, photosystem II 1 39.7 5.3 0.00018 29.0 -0.4 26 16-41 71-98 (113)
19 1qpz_A PURA, protein (purine n 38.4 22 0.00076 26.8 2.9 28 30-57 26-54 (340)
20 1hlv_A CENP-B, major centromer 37.8 26 0.0009 23.2 3.0 29 29-57 6-36 (131)
21 2kmf_A Photosystem II 11 kDa p 37.4 6.1 0.00021 28.7 -0.3 26 16-41 75-102 (115)
22 2jpc_A SSRB; DNA binding prote 31.7 26 0.00088 20.3 1.9 22 36-57 3-24 (61)
23 2xzm_O RPS13E; ribosome, trans 31.5 17 0.00057 27.8 1.3 26 32-57 32-57 (153)
24 2jn6_A Protein CGL2762, transp 26.7 21 0.00073 22.8 1.0 39 29-67 4-52 (97)
25 2prg_C Nuclear receptor coacti 24.4 23 0.00079 24.9 0.8 24 31-55 59-83 (88)
26 4g6q_A Putative uncharacterize 23.8 12 0.00042 27.4 -0.7 28 29-56 18-46 (182)
27 1p4w_A RCSB; solution structur 21.1 35 0.0012 22.9 1.2 28 29-57 33-60 (99)
28 3h5o_A Transcriptional regulat 20.5 21 0.00073 26.9 0.0 40 18-57 18-58 (339)
No 1
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=99.15 E-value=1.1e-11 Score=87.85 Aligned_cols=116 Identities=40% Similarity=0.682 Sum_probs=76.7
Q ss_pred eeeecCCCCCCcccCCcCcCCCCCChHHHHHHHHHHhcCCCCCchhhhhh--------cccCCCccCCccccc-------
Q psy2180 8 FGCSAAGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRTCS--------AVRRPATRGSTSWAA------- 72 (129)
Q Consensus 8 ~~~~~~~~~~vNqLGg~f~nGrPLp~~~R~kIVELa~~GvRPcdISR~L~--------IL~Ry~~tGS~~p~a------- 72 (129)
-+.+++|++++|+|||+|..++.++.+.|.+||+|+..|....+||+.++ .+++|.++|...+..
T Consensus 10 ~~~~~~~~~~~~~~gg~~~~~~~~s~e~r~~iv~~~~~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~ 89 (149)
T 1k78_A 10 PRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPK 89 (149)
T ss_dssp ---------CBCTTSCBCCTTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCS
T ss_pred CccccCCCCCccCCCceecCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCC
Confidence 35788999999999999999999999999999999999999999999998 467777666543321
Q ss_pred --cc---ccccccccccCCcchhhhhhhhhhhhhcccCCCC----chhhhhhhhhHhCCCCCC
Q psy2180 73 --FT---STGAPYRTQRDRRSWNWRTLARDPVISRASCRSP----TDVCRKFSAEQTGKRPNQ 126 (129)
Q Consensus 73 --~~---s~Ia~y~K~~np~~faWE~~IRd~Li~e~~C~~~----~~v~~~~~~~~~~~~~~~ 126 (129)
+. ..|.++ .+++|....|| |.+.|..+.+|... ....+++.....+..|||
T Consensus 90 ~~~~~~~~~I~~~-~~~~~~~s~~~--i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~~~~~~ 149 (149)
T 1k78_A 90 VATPKVVEKIAEY-KRQNPTMFAWE--IRDRLLAERVCDNDTVPSVSSINRIIRTKVQQPPNQ 149 (149)
T ss_dssp SSCHHHHHHHHHH-HHHCTTCCHHH--HHHHHHHTTSSCTTTSCCHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHH-HHhCcchhHHH--HHHHHHHhcccccCCCcCHHHHHHHHHHHhcCCCCC
Confidence 11 235556 45679999999 99999988766432 233345666677777876
No 2
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=99.06 E-value=4.6e-11 Score=80.16 Aligned_cols=89 Identities=38% Similarity=0.706 Sum_probs=70.9
Q ss_pred CCCCCcccCCcCcCCCCCChHHHHHHHHHHhcCCCCCchhhhhh--------cccCCCccCCccccc--------c-c--
Q psy2180 14 GHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRTCS--------AVRRPATRGSTSWAA--------F-T-- 74 (129)
Q Consensus 14 ~~~~vNqLGg~f~nGrPLp~~~R~kIVELa~~GvRPcdISR~L~--------IL~Ry~~tGS~~p~a--------~-~-- 74 (129)
|++.+|++||+|..++.++.+.|.+|++|+..|....+||+.+. .+++|..+|...+.. . +
T Consensus 1 ~~~~~~~~gg~~~m~~~~s~~~r~~i~~~~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~ 80 (128)
T 1pdn_C 1 GQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEI 80 (128)
T ss_dssp -CEEECTTSCEEETTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTH
T ss_pred CCchHhhhcccccCCCcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHH
Confidence 67899999999999999999999999999999999999999998 467776666543211 1 1
Q ss_pred -ccccccccccCCcchhhhhhhhhhhhhcccC
Q psy2180 75 -STGAPYRTQRDRRSWNWRTLARDPVISRASC 105 (129)
Q Consensus 75 -s~Ia~y~K~~np~~faWE~~IRd~Li~e~~C 105 (129)
..|.++ .+++|....|| |.+.|..+|++
T Consensus 81 ~~~i~~~-~~~~~~~s~~~--i~~~l~~~g~~ 109 (128)
T 1pdn_C 81 ENRIEEY-KRSSPGMFSWE--IREKLIREGVC 109 (128)
T ss_dssp HHHHHHT-TTTCTTCCHHH--HHHHHHHTSSS
T ss_pred HHHHHHH-HHhCcchHHHH--HHHHHHHcCCc
Confidence 125555 56689999999 99999888875
No 3
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=98.61 E-value=6e-08 Score=69.61 Aligned_cols=93 Identities=41% Similarity=0.794 Sum_probs=75.7
Q ss_pred cCCCCCCcccCCcCcCCCCCChHHHHHHHHHHhcCCCCCchhhhhh--------cccCCCccCCcccccc----c-----
Q psy2180 12 AAGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRTCS--------AVRRPATRGSTSWAAF----T----- 74 (129)
Q Consensus 12 ~~~~~~vNqLGg~f~nGrPLp~~~R~kIVELa~~GvRPcdISR~L~--------IL~Ry~~tGS~~p~a~----~----- 74 (129)
++|..+++++|+.|..++.++.+.|.+||+|...|....+||+.|. .+++|.++|...+..- +
T Consensus 7 ~~~~~~~~~~g~~~~~~~~~s~e~r~~ii~l~~~G~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~ 86 (159)
T 2k27_A 7 RSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATP 86 (159)
T ss_dssp CCSCSSCCCCCCTTSSSCSSCHHHHHHHHHHHHHTCCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCT
T ss_pred hhcchhhhhcCCcCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCH
Confidence 5788999999999999999999999999999999999999999998 5889988886544221 1
Q ss_pred ---ccccccccccCCcchhhhhhhhhhhhhcccCCC
Q psy2180 75 ---STGAPYRTQRDRRSWNWRTLARDPVISRASCRS 107 (129)
Q Consensus 75 ---s~Ia~y~K~~np~~faWE~~IRd~Li~e~~C~~ 107 (129)
..|.++ .+++|....|| |.+.|..+++|..
T Consensus 87 ~~~~~I~~~-~~~~~~~s~~~--i~~~l~~~~~~~~ 119 (159)
T 2k27_A 87 KVVEKIGDY-KRQNPTMFAWE--IRDRLLAEGVCDN 119 (159)
T ss_dssp THHHHHHHH-HHHCSSSCHHH--HHHHHHHHTCSCT
T ss_pred HHHHHHHHH-HHHCccchHHH--HHHHHHHhccccc
Confidence 124455 45579999999 9999998886643
No 4
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.47 E-value=0.0021 Score=35.95 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHHhcCCCCCchhhhhh--------cccCCCccCC
Q psy2180 30 PLPDSTRQKIVELAHSGARPCDISRTCS--------AVRRPATRGS 67 (129)
Q Consensus 30 PLp~~~R~kIVELa~~GvRPcdISR~L~--------IL~Ry~~tGS 67 (129)
.|++..+..|+.|...|+...+||+.|. .+.+|...|.
T Consensus 5 ~l~~~~~~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~~~~g~ 50 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGT 50 (51)
T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCSTTTTC
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhHHhcCC
Confidence 3788999999999999999999999998 4677776664
No 5
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=93.90 E-value=0.042 Score=37.12 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=51.4
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCchhhhhh--------cccCCCccCCccccccccc--------ccccccccCCcchhh
Q psy2180 28 GRPLPDSTRQKIVELAHSGARPCDISRTCS--------AVRRPATRGSTSWAAFTST--------GAPYRTQRDRRSWNW 91 (129)
Q Consensus 28 GrPLp~~~R~kIVELa~~GvRPcdISR~L~--------IL~Ry~~tGS~~p~a~~s~--------Ia~y~K~~np~~faW 91 (129)
+..+..+.|.+|++|...|....+||+.|+ .+.+|...|...+..-+.+ |..+ .++|..-.-
T Consensus 4 ~~~~s~~~r~~i~~~~~~G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~--~~~~~~s~~ 81 (141)
T 1u78_A 4 GSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA--ASNSCKTAR 81 (141)
T ss_dssp SCCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH--HHHCCCCHH
T ss_pred cccCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH--HhCCCCCHH
Confidence 356889999999999999999999999998 5788877775432111111 3333 334655455
Q ss_pred hhhhhhhhhhcccCCCCchhhh
Q psy2180 92 RTLARDPVISRASCRSPTDVCR 113 (129)
Q Consensus 92 E~~IRd~Li~e~~C~~~~~v~~ 113 (129)
| |.+.| ++.-+...|.+
T Consensus 82 ~--i~~~l---g~~~s~~tV~r 98 (141)
T 1u78_A 82 D--IRNEL---QLSASKRTILN 98 (141)
T ss_dssp H--HHHHT---TCCSCHHHHHH
T ss_pred H--HHHHH---CCCccHHHHHH
Confidence 5 66666 44334444544
No 6
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=92.61 E-value=0.019 Score=44.56 Aligned_cols=30 Identities=7% Similarity=-0.101 Sum_probs=27.4
Q ss_pred ccccccccccCCcchhhhhhhhhhhhhcccCCC
Q psy2180 75 STGAPYRTQRDRRSWNWRTLARDPVISRASCRS 107 (129)
Q Consensus 75 s~Ia~y~K~~np~~faWE~~IRd~Li~e~~C~~ 107 (129)
.+|++| +++||.+|+|| |++.|+..|+|..
T Consensus 18 ~~ie~~-~~e~p~~l~~~--Ik~~l~~~gitQ~ 47 (194)
T 1ic8_A 18 AVVETL-LQEDPWRVAKM--VKSYLQQHNIPQR 47 (194)
T ss_dssp HHHHHH-TTSCHHHHHHH--HHHHHHHTTCCHH
T ss_pred HHHHHH-HccCHHHHHHH--HHHHHHHcCCCHH
Confidence 679999 99999999999 9999999998754
No 7
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=84.51 E-value=0.34 Score=27.14 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHhcCCCCCchhhhhh
Q psy2180 31 LPDSTRQKIVELAHSGARPCDISRTCS 57 (129)
Q Consensus 31 Lp~~~R~kIVELa~~GvRPcdISR~L~ 57 (129)
+.++.+..|++|...|....+||+.+.
T Consensus 6 ~~~~~~~~i~~l~~~g~s~~~ia~~lg 32 (52)
T 1jko_C 6 INKHEQEQISRLLEKGHPRQQLAIIFG 32 (52)
T ss_dssp SCTTHHHHHHHHHHTTCCHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 456677899999999998999999987
No 8
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=76.57 E-value=1.3 Score=28.22 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=18.8
Q ss_pred CCChHHHHHHHHHHhc-CCCCCchhhhhh
Q psy2180 30 PLPDSTRQKIVELAHS-GARPCDISRTCS 57 (129)
Q Consensus 30 PLp~~~R~kIVELa~~-GvRPcdISR~L~ 57 (129)
.++.++|.+|.+.+.. |.+|...++.|.
T Consensus 29 ~vs~et~~rI~~aa~~lgY~pn~~a~~l~ 57 (65)
T 1uxc_A 29 RVSDKTVEKVMAVVREHNYHPNAVAAGLR 57 (65)
T ss_dssp TCTTHHHHHHHHHHHHHTCCCC-------
T ss_pred CCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 4899999999998875 999999998775
No 9
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=73.21 E-value=3.5 Score=26.32 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=19.6
Q ss_pred cCCC-CCChHHHHHHHHHHhc-CCCCCchhhhhh
Q psy2180 26 VNGR-PLPDSTRQKIVELAHS-GARPCDISRTCS 57 (129)
Q Consensus 26 ~nGr-PLp~~~R~kIVELa~~-GvRPcdISR~L~ 57 (129)
.||. .++++.|++|.+.+.+ |.+|...++.|.
T Consensus 30 ln~~~~vs~~t~~rV~~~a~~lgY~pn~~a~~l~ 63 (67)
T 2l8n_A 30 LMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVK 63 (67)
T ss_dssp TTCCCCSCHHHHHHHHHHHHHHCCCC--------
T ss_pred HcCCCCCCHHHHHHHHHHHHHhCCCccHHHHHhh
Confidence 4454 5799999999998876 999999888764
No 10
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=69.44 E-value=0.83 Score=36.48 Aligned_cols=31 Identities=3% Similarity=-0.174 Sum_probs=27.2
Q ss_pred ccccccccccCCcchhhhhhhhhhhhhcccCCCC
Q psy2180 75 STGAPYRTQRDRRSWNWRTLARDPVISRASCRSP 108 (129)
Q Consensus 75 s~Ia~y~K~~np~~faWE~~IRd~Li~e~~C~~~ 108 (129)
.+|+.| .++||..|+|+ |++.++..|+|..+
T Consensus 19 ~~Ve~l-~~~~~~~~~~~--Ik~~r~~~gltQ~e 49 (221)
T 2h8r_A 19 AEVDRM-LSEDPWRAAKM--IKGYMQQHNIPQRE 49 (221)
T ss_dssp HHHHHH-TTSCHHHHHHH--HHHHHHHHTCCHHH
T ss_pred HHHHHH-HhcCcHHHHHH--HHHHHHHcCCCHHH
Confidence 568999 78889999999 99999999998654
No 11
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=68.25 E-value=1.9 Score=25.17 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.8
Q ss_pred CC--hHHHHHHHHHHhcCCCCCchhhhhh
Q psy2180 31 LP--DSTRQKIVELAHSGARPCDISRTCS 57 (129)
Q Consensus 31 Lp--~~~R~kIVELa~~GvRPcdISR~L~ 57 (129)
|. +.....|++|...|....+||+.|.
T Consensus 14 l~~~~~~~~~i~~l~~~g~s~~eIA~~lg 42 (55)
T 2x48_A 14 VESEDDLVSVAHELAKMGYTVQQIANALG 42 (55)
T ss_dssp ECSHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred HhcCHHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 56 7778899999999999999999987
No 12
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.32 E-value=6.5 Score=30.16 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHhcCCCCCchhhhhh
Q psy2180 32 PDSTRQKIVELAHSGARPCDISRTCS 57 (129)
Q Consensus 32 p~~~R~kIVELa~~GvRPcdISR~L~ 57 (129)
+++.-..|++||+.|..|+.|--.|+
T Consensus 30 ~eev~~~i~klakkG~~pSqIG~~LR 55 (158)
T 3j20_Q 30 VEEIENLVVKLRKEGYSTAMIGTILR 55 (158)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHhhHHHh
Confidence 77899999999999999999999998
No 13
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=49.88 E-value=9 Score=29.24 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHhcCCCCCchhhhhh
Q psy2180 32 PDSTRQKIVELAHSGARPCDISRTCS 57 (129)
Q Consensus 32 p~~~R~kIVELa~~GvRPcdISR~L~ 57 (129)
+++.-..|++||+.|..|++|--.|+
T Consensus 30 ~eeVe~~I~klakkG~tpSqIG~iLR 55 (151)
T 3u5c_N 30 SESVIEQIVKYARKGLTPSQIGVLLR 55 (151)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHhhhHHh
Confidence 67899999999999999999999888
No 14
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=43.88 E-value=19 Score=26.95 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.1
Q ss_pred CCChHHHHHHHHHHhc-CCCCCchhhhhh
Q psy2180 30 PLPDSTRQKIVELAHS-GARPCDISRTCS 57 (129)
Q Consensus 30 PLp~~~R~kIVELa~~-GvRPcdISR~L~ 57 (129)
.+++++|+||.+.+++ |-+|...+|.|+
T Consensus 28 ~vs~~tr~rV~~aa~~lgY~pn~~ar~l~ 56 (332)
T 2hsg_A 28 NVKPSTRKKVLETIERLGYRPNAVARGLA 56 (332)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSCHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 4799999999998877 999999999886
No 15
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=43.08 E-value=5.7 Score=30.41 Aligned_cols=67 Identities=10% Similarity=0.023 Sum_probs=44.2
Q ss_pred CCChHHHHHHHHHHhcCCCCCchhhhhh---------------cccCCCccC-Ccc--------cccccccccccccccC
Q psy2180 30 PLPDSTRQKIVELAHSGARPCDISRTCS---------------AVRRPATRG-STS--------WAAFTSTGAPYRTQRD 85 (129)
Q Consensus 30 PLp~~~R~kIVELa~~GvRPcdISR~L~---------------IL~Ry~~tG-S~~--------p~a~~s~Ia~y~K~~n 85 (129)
|...+.|..||.+.+.|....+|++.|+ .+.||.+++ ++. +......|..+ -+++
T Consensus 6 ~~~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~~~i~~~-v~~~ 84 (345)
T 3hot_A 6 PNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQAL-LDED 84 (345)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCHHHHHHH-HHHC
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhCCCccccCCCCCCCCCcccHHHHHHH-HHhC
Confidence 4456799999999999999999999975 467776632 221 11112234444 3456
Q ss_pred Ccchhhhhhhhhhh
Q psy2180 86 RRSWNWRTLARDPV 99 (129)
Q Consensus 86 p~~faWE~~IRd~L 99 (129)
|..-.-| |.+.|
T Consensus 85 ~~~t~~~--ia~~l 96 (345)
T 3hot_A 85 DAQTQKQ--LAEQL 96 (345)
T ss_dssp SCCCHHH--HHHHT
T ss_pred ccchHHH--HHHHH
Confidence 8777777 66666
No 16
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=42.69 E-value=34 Score=21.86 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=24.7
Q ss_pred CCChHHHHHHHHHHhcCCCCCchhhhhh
Q psy2180 30 PLPDSTRQKIVELAHSGARPCDISRTCS 57 (129)
Q Consensus 30 PLp~~~R~kIVELa~~GvRPcdISR~L~ 57 (129)
-.+.+.+..+|+++..|....+||+.+.
T Consensus 22 ~ys~e~k~~~v~~~~~g~s~~~iA~~~g 49 (87)
T 2elh_A 22 SLTPRDKIHAIQRIHDGESKASVARDIG 49 (87)
T ss_dssp SCCHHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHC
Confidence 5678899999999988988889999988
No 17
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=40.53 E-value=1 Score=31.20 Aligned_cols=63 Identities=16% Similarity=0.060 Sum_probs=45.8
Q ss_pred HHHHHHHHHHh-cCCCCCchhhhhh--------cccCCCccCCccccccc------------ccccccccccCCcchhhh
Q psy2180 34 STRQKIVELAH-SGARPCDISRTCS--------AVRRPATRGSTSWAAFT------------STGAPYRTQRDRRSWNWR 92 (129)
Q Consensus 34 ~~R~kIVELa~-~GvRPcdISR~L~--------IL~Ry~~tGS~~p~a~~------------s~Ia~y~K~~np~~faWE 92 (129)
..+++|++... .+..+.|++..+. +|+....+|.+-+.+-. ..|.+| -++++.+-..|
T Consensus 7 ~l~~~i~~~~~~~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~it~ae 85 (121)
T 2pjp_A 7 AIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDL-DQECGSTCAAD 85 (121)
T ss_dssp HHHHHHGGGCSSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHH-HHHHSSEEHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHH-HHHCCCccHHH
Confidence 36778888775 4556677877666 56777788988887553 246666 45579999999
Q ss_pred hhhhhhh
Q psy2180 93 TLARDPV 99 (129)
Q Consensus 93 ~~IRd~L 99 (129)
.||.|
T Consensus 86 --~Rd~l 90 (121)
T 2pjp_A 86 --FRDRL 90 (121)
T ss_dssp --HHHHH
T ss_pred --HHHHH
Confidence 99998
No 18
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=39.73 E-value=5.3 Score=28.99 Aligned_cols=26 Identities=31% Similarity=0.736 Sum_probs=21.7
Q ss_pred CCCcccCCcCc--CCCCCChHHHHHHHH
Q psy2180 16 SGINQLGGVYV--NGRPLPDSTRQKIVE 41 (129)
Q Consensus 16 ~~vNqLGg~f~--nGrPLp~~~R~kIVE 41 (129)
..+|+|+|-|. +-+|||...+.+|.+
T Consensus 71 tAlNaLAGHY~s~g~~PlPek~k~Rl~~ 98 (113)
T 2y6x_A 71 TALNSLAGHYSSYPNRPLPEKLKARLEQ 98 (113)
T ss_dssp HHHHHHHHHHHHCTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 45789988777 689999999999875
No 19
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=38.39 E-value=22 Score=26.78 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHHhc-CCCCCchhhhhh
Q psy2180 30 PLPDSTRQKIVELAHS-GARPCDISRTCS 57 (129)
Q Consensus 30 PLp~~~R~kIVELa~~-GvRPcdISR~L~ 57 (129)
.+++++|+||.+.+++ |-+|...+|.|+
T Consensus 26 ~vs~~tr~rV~~~a~~lgY~pn~~ar~l~ 54 (340)
T 1qpz_A 26 FVAEETRNAVWAAIKELHYSPSAVARSLK 54 (340)
T ss_dssp CCCHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCHHHHhhc
Confidence 4799999999998876 999999999886
No 20
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=37.77 E-value=26 Score=23.23 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=24.3
Q ss_pred CCCChHHHHHHHHHH-hcCCCCC-chhhhhh
Q psy2180 29 RPLPDSTRQKIVELA-HSGARPC-DISRTCS 57 (129)
Q Consensus 29 rPLp~~~R~kIVELa-~~GvRPc-dISR~L~ 57 (129)
+.++.+.+.+||+++ ..|.... +||+.++
T Consensus 6 ~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~g 36 (131)
T 1hlv_A 6 RQLTFREKSRIIQEVEENPDLRKGEIARRFN 36 (131)
T ss_dssp CCCCHHHHHHHHHHHHHCTTSCHHHHHHHHT
T ss_pred eeCCHHHHHHHHHHHHHCCCCcHHHHHHHhC
Confidence 568999999999998 6676655 8999988
No 21
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=37.40 E-value=6.1 Score=28.67 Aligned_cols=26 Identities=27% Similarity=0.732 Sum_probs=22.0
Q ss_pred CCCcccCCcCc--CCCCCChHHHHHHHH
Q psy2180 16 SGINQLGGVYV--NGRPLPDSTRQKIVE 41 (129)
Q Consensus 16 ~~vNqLGg~f~--nGrPLp~~~R~kIVE 41 (129)
..+|+|+|-|. +-+|||...+.+|.+
T Consensus 75 tAlNaLAGHY~s~g~~PlPek~k~Rl~~ 102 (115)
T 2kmf_A 75 TALNSLAGYYTSYGARPIPEKLKKRLQL 102 (115)
T ss_dssp HHHHHHHHHHHHHSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 45789988877 689999999999975
No 22
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.73 E-value=26 Score=20.25 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCCCCchhhhhh
Q psy2180 36 RQKIVELAHSGARPCDISRTCS 57 (129)
Q Consensus 36 R~kIVELa~~GvRPcdISR~L~ 57 (129)
.++|+.|...|...-+||+.|.
T Consensus 3 e~~vl~l~~~g~s~~eIA~~l~ 24 (61)
T 2jpc_A 3 ERQVLKLIDEGYTNHGISEKLH 24 (61)
T ss_dssp HHHHHHHHHTSCCSHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHhC
Confidence 4688999999999999999997
No 23
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=31.53 E-value=17 Score=27.81 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHhcCCCCCchhhhhh
Q psy2180 32 PDSTRQKIVELAHSGARPCDISRTCS 57 (129)
Q Consensus 32 p~~~R~kIVELa~~GvRPcdISR~L~ 57 (129)
+++.-..|++||+.|..|++|--.|+
T Consensus 32 ~eeVe~~I~klakkG~tpSqIG~iLR 57 (153)
T 2xzm_O 32 PSTVVDLSVKLAKKGLTPSQIGVILR 57 (153)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHhhhHHh
Confidence 67899999999999999999988887
No 24
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=26.67 E-value=21 Score=22.81 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=29.8
Q ss_pred CCCChHHHHHHHHHHh-c-CCCCCchhhhhhc--------ccCCCccCC
Q psy2180 29 RPLPDSTRQKIVELAH-S-GARPCDISRTCSA--------VRRPATRGS 67 (129)
Q Consensus 29 rPLp~~~R~kIVELa~-~-GvRPcdISR~L~I--------L~Ry~~tGS 67 (129)
+..+.+.+.++|+++. . |....+||+.++| +++|..+|.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 3467889999999985 4 8888999999883 556666553
No 25
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=24.37 E-value=23 Score=24.91 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=16.0
Q ss_pred CChHHHHHHH-HHHhcCCCCCchhhh
Q psy2180 31 LPDSTRQKIV-ELAHSGARPCDISRT 55 (129)
Q Consensus 31 Lp~~~R~kIV-ELa~~GvRPcdISR~ 55 (129)
-...+||||+ .|.+.| .|.||++.
T Consensus 59 sSL~EKHKILHrLLQ~g-SP~dvakl 83 (88)
T 2prg_C 59 SSLTERHKILHRLLQEG-SPSDITTL 83 (88)
T ss_dssp ----CTTHHHHHHHHSS-CCCCCC--
T ss_pred chHHHHHHHHHHHHhcC-ChHhhhhc
Confidence 3567899998 578888 99999985
No 26
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=23.83 E-value=12 Score=27.37 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=19.6
Q ss_pred CCCChHHHHHHHHHHhcCC-CCCchhhhh
Q psy2180 29 RPLPDSTRQKIVELAHSGA-RPCDISRTC 56 (129)
Q Consensus 29 rPLp~~~R~kIVELa~~Gv-RPcdISR~L 56 (129)
..|++..|.+||++...|= -.|+|+..|
T Consensus 18 ~~La~P~Rl~il~~L~~~~~~~~~l~~~l 46 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIGRSLTTRELAELL 46 (182)
T ss_dssp HHTTSHHHHHHHHHTTTSCEEHHHHHHHC
T ss_pred HHhCCHHHHHHHHHHHhCCCCHHHHHHHh
Confidence 3578899999999887632 355555544
No 27
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=21.09 E-value=35 Score=22.85 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=23.1
Q ss_pred CCCChHHHHHHHHHHhcCCCCCchhhhhh
Q psy2180 29 RPLPDSTRQKIVELAHSGARPCDISRTCS 57 (129)
Q Consensus 29 rPLp~~~R~kIVELa~~GvRPcdISR~L~ 57 (129)
..|++..| .|+.|...|...-+||..|.
T Consensus 33 ~~Lt~re~-~Vl~l~~~G~s~~EIA~~L~ 60 (99)
T 1p4w_A 33 KRLSPKES-EVLRLFAEGFLVTEIAKKLN 60 (99)
T ss_dssp SSCCHHHH-HHHHHHHHTCCHHHHHHHHT
T ss_pred CCCCHHHH-HHHHHHHcCCCHHHHHHHHC
Confidence 45665555 78899999999999999997
No 28
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=20.45 E-value=21 Score=26.85 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=0.0
Q ss_pred CcccCCcCcCCCCCChHHHHHHHHHHhc-CCCCCchhhhhh
Q psy2180 18 INQLGGVYVNGRPLPDSTRQKIVELAHS-GARPCDISRTCS 57 (129)
Q Consensus 18 vNqLGg~f~nGrPLp~~~R~kIVELa~~-GvRPcdISR~L~ 57 (129)
+-....++.+...+++++|+||.+.+.+ |-+|...++.|.
T Consensus 18 ~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~ 58 (339)
T 3h5o_A 18 AITVSRVLNQPQQVSEQLREKVMQAVDALAYVPSRSASTLA 58 (339)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcCHHHHhhh
Confidence 3344455554445689999999999876 999999998875
Done!