RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2180
         (129 letters)



>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 63

 Score = 65.4 bits (160), Expect = 3e-16
 Identities = 31/38 (81%), Positives = 34/38 (89%)

Query: 17 GINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISR 54
          G+NQLGGV+VNGRPLPD  RQ+IVELAH G RPCDISR
Sbjct: 1  GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISR 38


>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 123

 Score = 64.2 bits (156), Expect = 6e-15
 Identities = 25/43 (58%), Positives = 31/43 (72%)

Query: 15 HSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRTCS 57
             +NQLGGV++NGRPLP++ R KIVE+A  G RPC ISR   
Sbjct: 1  QGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLR 43


>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain
          {Human (Homo sapiens), isoform V [TaxId: 9606]}
          Length = 438

 Score = 26.1 bits (56), Expect = 1.5
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 3  QSGALFGCSAAGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARP-CDIS--RTCSAV 59
            G+ FG +              + G P  ++T+  IVE    G    CD S  R C  +
Sbjct: 14 PEGSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVE---GGQVLKCDWSSTRRCQPI 70

Query: 60 RRPATRGSTS 69
             AT     
Sbjct: 71 EFDATGNRDY 80


>d3bwud1 b.167.1.1 (D:2-122) Outer membrane usher protein FimD
          {Escherichia coli [TaxId: 562]}
          Length = 121

 Score = 25.6 bits (56), Expect = 1.5
 Identities = 5/27 (18%), Positives = 9/27 (33%)

Query: 24 VYVNGRPLPDSTRQKIVELAHSGARPC 50
          +Y+N   +           +  G  PC
Sbjct: 36 IYLNNGYMATRDVTFNTGDSEQGIVPC 62


>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 272

 Score = 24.8 bits (54), Expect = 3.5
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 9   GCSAAGHSGINQLGGVYVNGRPLPDSTRQKI 39
             +     GI     V  + RP+P+  R+K+
Sbjct: 195 SVATLRGVGIQPDILVLRSARPVPEEVRRKV 225


>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 273

 Score = 24.8 bits (54), Expect = 3.8
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 9   GCSAAGHSGINQLGGVYVNGRPLPDSTRQKI 39
                   G++    V     PL  S ++KI
Sbjct: 200 SVRELRGLGLSPDLVVCRCSNPLDTSVKEKI 230


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.129    0.408 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 469,449
Number of extensions: 19219
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 8
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)