BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2181
(490 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P47238|PAX6_COTJA Paired box protein Pax-6 OS=Coturnix coturnix japonica GN=PAX6 PE=2
SV=1
Length = 416
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 108/161 (67%), Gaps = 24/161 (14%)
Query: 3 VSSINRVLRNLAAQKEQQASAHNQTSETVYDKLRMFNGQPG-WA----WYPGSTPPPSPA 57
VSSINRVLRNLA++K+Q + + +YDKLRM NGQ G W WYPG++ P PA
Sbjct: 120 VSSINRVLRNLASEKQQMGA------DGMYDKLRMLNGQTGTWGTRPGWYPGTSVPGQPA 173
Query: 58 HLALPHNPGSVTPISRDDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNE 117
P G E+T+ I+S N +++QMRL+LKRKLQRNRTSFT E
Sbjct: 174 QDGCPQQEGG-----------GENTNSISS--NGEDSDEAQMRLQLKRKLQRNRTSFTQE 220
Query: 118 QIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
QI++LEKEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 221 QIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 261
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 92/187 (49%), Gaps = 50/187 (26%)
Query: 118 QIDSLEKEFERTHYPDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQKEQQASA 173
++ S +++R P +FA R+RL + I VSSINRVLRNLA++K+Q +
Sbjct: 82 EVVSKIAQYKR-ECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGA- 139
Query: 174 HNQTSETVYDKLRMFNGQPG-WA----WYPGSTPTPSPAHLALPHNPG------SVTPIS 222
+ +YDKLRM NGQ G W WYPG++ PA P G S++
Sbjct: 140 -----DGMYDKLRMLNGQTGTWGTRPGWYPGTSVPGQPAQDGCPQQEGGGENTNSISSNG 194
Query: 223 RDD----------------------------AKEFERTHYPDVFARERLADKIGLPEARI 254
D KEFERTHYPDVFARERLA KI LPEARI
Sbjct: 195 EDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARI 254
Query: 255 QVSSINR 261
QV NR
Sbjct: 255 QVWFSNR 261
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 69/208 (33%)
Query: 215 PGSVTPISRDDAKEFERTHYPDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQK 270
P TP +++R P +FA R+RL + I VSSINRVLRNLA++K
Sbjct: 76 PRVATPEVVSKIAQYKR-ECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEK 134
Query: 271 EQQASAHNQTSETVYDKLRMFNGQPG-WA----WYPGSTPTPSPAHLALPHNPG------ 319
+Q + + +YDKLRM NGQ G W WYPG++ PA P G
Sbjct: 135 QQMGA------DGMYDKLRMLNGQTGTWGTRPGWYPGTSVPGQPAQDGCPQQEGGGENTN 188
Query: 320 ------------------------SVTPISRDDAKGLVQQSAR----------------- 338
+ T +++ + L ++ R
Sbjct: 189 SISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKID 248
Query: 339 ------QVWFSNRRAKWRREEKLRNQRR 360
QVWFSNRRAKWRREEKLRNQRR
Sbjct: 249 LPEARIQVWFSNRRAKWRREEKLRNQRR 276
>sp|O73917|PAX6_ORYLA Paired box protein Pax-6 OS=Oryzias latipes GN=pax6 PE=2 SV=1
Length = 437
Score = 159 bits (401), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/161 (55%), Positives = 107/161 (66%), Gaps = 24/161 (14%)
Query: 3 VSSINRVLRNLAAQKEQQASAHNQTSETVYDKLRMFNGQPG-WA----WYPGSTPPPSPA 57
VSSINRVLRNLA++K+Q + + +YDKLRM NGQ G W WYPG++ P P
Sbjct: 139 VSSINRVLRNLASEKQQMGA------DGMYDKLRMLNGQTGTWGTRPGWYPGTSVPGQPN 192
Query: 58 HLALPHNPGSVTPISRDDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNE 117
G+ E+T+ I+S N E++QMRL+LKRKLQRNRTSFT E
Sbjct: 193 QDGCQQQDGA-----------GENTNSISS--NGEDSEETQMRLQLKRKLQRNRTSFTQE 239
Query: 118 QIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
QI++LEKEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 240 QIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 280
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 86/177 (48%), Gaps = 49/177 (27%)
Query: 128 RTHYPDVFA---RERL-ADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETVYD 183
+ P +FA R+RL ++ I + VSSINRVLRNLA++K+Q + + +YD
Sbjct: 110 KRECPSIFAWEIRDRLLSEGICTNDNIPSVSSINRVLRNLASEKQQMGA------DGMYD 163
Query: 184 KLRMFNGQPG-WA----WYPGSTPTPSPAHLALPHNPG------SVTPISRDDA------ 226
KLRM NGQ G W WYPG++ P G S++ D
Sbjct: 164 KLRMLNGQTGTWGTRPGWYPGTSVPGQPNQDGCQQQDGAGENTNSISSNGEDSEETQMRL 223
Query: 227 ----------------------KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
KEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 224 QLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 280
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 16/99 (16%)
Query: 215 PGSVTPISRDDAKEFERTHYPDVFA---RERL-ADKIGLPEARIQVSSINRVLRNLAAQK 270
P TP +++R P +FA R+RL ++ I + VSSINRVLRNLA++K
Sbjct: 95 PRVATPEVVAKIAQYKR-ECPSIFAWEIRDRLLSEGICTNDNIPSVSSINRVLRNLASEK 153
Query: 271 EQQASAHNQTSETVYDKLRMFNGQPG-W----AWYPGST 304
+Q ++ +YDKLRM NGQ G W WYPG++
Sbjct: 154 QQMG------ADGMYDKLRMLNGQTGTWGTRPGWYPGTS 186
>sp|P63016|PAX6_RAT Paired box protein Pax-6 OS=Rattus norvegicus GN=Pax6 PE=2 SV=1
Length = 422
Score = 158 bits (400), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 107/161 (66%), Gaps = 24/161 (14%)
Query: 3 VSSINRVLRNLAAQKEQQASAHNQTSETVYDKLRMFNGQPG-WA----WYPGSTPPPSPA 57
VSSINRVLRNLA++K+Q + + +YDKLRM NGQ G W WYPG++ P P
Sbjct: 120 VSSINRVLRNLASEKQQMGA------DGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPT 173
Query: 58 HLALPHNPGSVTPISRDDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNE 117
G + E+T+ I+S N +++QMRL+LKRKLQRNRTSFT E
Sbjct: 174 QDGCQQQEG-----------QGENTNSISS--NGEDSDEAQMRLQLKRKLQRNRTSFTQE 220
Query: 118 QIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
QI++LEKEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 221 QIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 261
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 84/177 (47%), Gaps = 49/177 (27%)
Query: 128 RTHYPDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQKEQQASAHNQTSETVYD 183
+ P +FA R+RL + I VSSINRVLRNLA++K+Q + + +YD
Sbjct: 91 KRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGA------DGMYD 144
Query: 184 KLRMFNGQPG-WA----WYPGSTPTPSPAHLALPHNPG------SVTPISRDD------- 225
KLRM NGQ G W WYPG++ P G S++ D
Sbjct: 145 KLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGQGENTNSISSNGEDSDEAQMRL 204
Query: 226 ---------------------AKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
KEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 205 QLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 261
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 16/99 (16%)
Query: 215 PGSVTPISRDDAKEFERTHYPDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQK 270
P TP +++R P +FA R+RL + I VSSINRVLRNLA++K
Sbjct: 76 PRVATPEVVSKIAQYKR-ECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEK 134
Query: 271 EQQASAHNQTSETVYDKLRMFNGQPG-W----AWYPGST 304
+Q ++ +YDKLRM NGQ G W WYPG++
Sbjct: 135 QQMG------ADGMYDKLRMLNGQTGSWGTRPGWYPGTS 167
>sp|Q1LZF1|PAX6_BOVIN Paired box protein Pax-6 OS=Bos taurus GN=PAX6 PE=2 SV=1
Length = 422
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 106/161 (65%), Gaps = 24/161 (14%)
Query: 3 VSSINRVLRNLAAQKEQQASAHNQTSETVYDKLRMFNGQPG-WA----WYPGSTPPPSPA 57
VSSINRVLRNLA++K+Q + + +YDKLRM NGQ G W WYPG++ P P
Sbjct: 120 VSSINRVLRNLASEKQQMGA------DGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPT 173
Query: 58 HLALPHNPGSVTPISRDDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNE 117
G E+T+ I+S N +++QMRL+LKRKLQRNRTSFT E
Sbjct: 174 QDGCQQQEGG-----------GENTNSISS--NGEDSDEAQMRLQLKRKLQRNRTSFTQE 220
Query: 118 QIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
QI++LEKEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 221 QIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 261
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 84/177 (47%), Gaps = 49/177 (27%)
Query: 128 RTHYPDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQKEQQASAHNQTSETVYD 183
+ P +FA R+RL + I VSSINRVLRNLA++K+Q + + +YD
Sbjct: 91 KRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGA------DGMYD 144
Query: 184 KLRMFNGQPG-WA----WYPGSTPTPSPAHLALPHNPG------SVTPISRDD------- 225
KLRM NGQ G W WYPG++ P G S++ D
Sbjct: 145 KLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRL 204
Query: 226 ---------------------AKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
KEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 205 QLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 261
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 16/99 (16%)
Query: 215 PGSVTPISRDDAKEFERTHYPDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQK 270
P TP +++R P +FA R+RL + I VSSINRVLRNLA++K
Sbjct: 76 PRVATPEVVSKIAQYKR-ECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEK 134
Query: 271 EQQASAHNQTSETVYDKLRMFNGQPG-W----AWYPGST 304
+Q ++ +YDKLRM NGQ G W WYPG++
Sbjct: 135 QQMG------ADGMYDKLRMLNGQTGSWGTRPGWYPGTS 167
>sp|P63015|PAX6_MOUSE Paired box protein Pax-6 OS=Mus musculus GN=Pax6 PE=1 SV=1
Length = 422
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 106/161 (65%), Gaps = 24/161 (14%)
Query: 3 VSSINRVLRNLAAQKEQQASAHNQTSETVYDKLRMFNGQPG-WA----WYPGSTPPPSPA 57
VSSINRVLRNLA++K+Q + + +YDKLRM NGQ G W WYPG++ P P
Sbjct: 120 VSSINRVLRNLASEKQQMGA------DGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPT 173
Query: 58 HLALPHNPGSVTPISRDDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNE 117
G E+T+ I+S N +++QMRL+LKRKLQRNRTSFT E
Sbjct: 174 QDGCQQQEGG-----------GENTNSISS--NGEDSDEAQMRLQLKRKLQRNRTSFTQE 220
Query: 118 QIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
QI++LEKEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 221 QIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 261
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 84/177 (47%), Gaps = 49/177 (27%)
Query: 128 RTHYPDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQKEQQASAHNQTSETVYD 183
+ P +FA R+RL + I VSSINRVLRNLA++K+Q + + +YD
Sbjct: 91 KRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGA------DGMYD 144
Query: 184 KLRMFNGQPG-WA----WYPGSTPTPSPAHLALPHNPG------SVTPISRDD------- 225
KLRM NGQ G W WYPG++ P G S++ D
Sbjct: 145 KLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRL 204
Query: 226 ---------------------AKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
KEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 205 QLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 261
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 16/99 (16%)
Query: 215 PGSVTPISRDDAKEFERTHYPDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQK 270
P TP +++R P +FA R+RL + I VSSINRVLRNLA++K
Sbjct: 76 PRVATPEVVSKIAQYKR-ECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEK 134
Query: 271 EQQASAHNQTSETVYDKLRMFNGQPG-W----AWYPGST 304
+Q ++ +YDKLRM NGQ G W WYPG++
Sbjct: 135 QQMG------ADGMYDKLRMLNGQTGSWGTRPGWYPGTS 167
>sp|P26367|PAX6_HUMAN Paired box protein Pax-6 OS=Homo sapiens GN=PAX6 PE=1 SV=2
Length = 422
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 106/161 (65%), Gaps = 24/161 (14%)
Query: 3 VSSINRVLRNLAAQKEQQASAHNQTSETVYDKLRMFNGQPG-WA----WYPGSTPPPSPA 57
VSSINRVLRNLA++K+Q + + +YDKLRM NGQ G W WYPG++ P P
Sbjct: 120 VSSINRVLRNLASEKQQMGA------DGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPT 173
Query: 58 HLALPHNPGSVTPISRDDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNE 117
G E+T+ I+S N +++QMRL+LKRKLQRNRTSFT E
Sbjct: 174 QDGCQQQEGG-----------GENTNSISS--NGEDSDEAQMRLQLKRKLQRNRTSFTQE 220
Query: 118 QIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
QI++LEKEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 221 QIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 261
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 84/177 (47%), Gaps = 49/177 (27%)
Query: 128 RTHYPDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQKEQQASAHNQTSETVYD 183
+ P +FA R+RL + I VSSINRVLRNLA++K+Q + + +YD
Sbjct: 91 KRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGA------DGMYD 144
Query: 184 KLRMFNGQPG-WA----WYPGSTPTPSPAHLALPHNPG------SVTPISRDD------- 225
KLRM NGQ G W WYPG++ P G S++ D
Sbjct: 145 KLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRL 204
Query: 226 ---------------------AKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
KEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 205 QLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 261
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 16/99 (16%)
Query: 215 PGSVTPISRDDAKEFERTHYPDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQK 270
P TP +++R P +FA R+RL + I VSSINRVLRNLA++K
Sbjct: 76 PRVATPEVVSKIAQYKR-ECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEK 134
Query: 271 EQQASAHNQTSETVYDKLRMFNGQPG-W----AWYPGST 304
+Q ++ +YDKLRM NGQ G W WYPG++
Sbjct: 135 QQMG------ADGMYDKLRMLNGQTGSWGTRPGWYPGTS 167
>sp|P55864|PAX6_XENLA Paired box protein Pax-6 OS=Xenopus laevis GN=pax6 PE=2 SV=1
Length = 422
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 105/161 (65%), Gaps = 24/161 (14%)
Query: 3 VSSINRVLRNLAAQKEQQASAHNQTSETVYDKLRMFNGQPG-WA----WYPGSTPPPSPA 57
VSSINRVLRNLA+ K+Q S E +YDKLRM NGQ W WYPG++ P PA
Sbjct: 120 VSSINRVLRNLASDKQQMGS------EGMYDKLRMLNGQTATWGSRPGWYPGTSVPGQPA 173
Query: 58 HLALPHNPGSVTPISRDDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNE 117
G E+T+ I+S N +++QMRL+LKRKLQRNRTSFT E
Sbjct: 174 QEGCQPQEGV-----------GENTNSISS--NGEDSDEAQMRLQLKRKLQRNRTSFTQE 220
Query: 118 QIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
QI++LEKEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 221 QIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 261
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 85/179 (47%), Gaps = 53/179 (29%)
Query: 130 HY----PDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQKEQQASAHNQTSETV 181
HY P +FA R+RL + I VSSINRVLRNLA+ K+Q S E +
Sbjct: 89 HYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASDKQQMGS------EGM 142
Query: 182 YDKLRMFNGQPG-WA----WYPGSTPTPSPAHLA------LPHNPGSVTPISRDD----- 225
YDKLRM NGQ W WYPG++ PA + N S++ D
Sbjct: 143 YDKLRMLNGQTATWGSRPGWYPGTSVPGQPAQEGCQPQEGVGENTNSISSNGEDSDEAQM 202
Query: 226 -----------------------AKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
KEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 203 RLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 261
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 89/208 (42%), Gaps = 69/208 (33%)
Query: 215 PGSVTPISRDDAKEFERTHYPDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQK 270
P TP + ++R P +FA R+RL + I VSSINRVLRNLA+ K
Sbjct: 76 PRVATPEVVNKIAHYKR-ECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASDK 134
Query: 271 EQQASAHNQTSETVYDKLRMFNGQPG-WA----WYPGSTPTPSPA------HLALPHNPG 319
+Q S E +YDKLRM NGQ W WYPG++ PA + N
Sbjct: 135 QQMGS------EGMYDKLRMLNGQTATWGSRPGWYPGTSVPGQPAQEGCQPQEGVGENTN 188
Query: 320 SV------------------------TPISRDDAKGLVQQSAR----------------- 338
S+ T +++ + L ++ R
Sbjct: 189 SISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKID 248
Query: 339 ------QVWFSNRRAKWRREEKLRNQRR 360
QVWFSNRRAKWRREEKLRNQRR
Sbjct: 249 LPEARIQVWFSNRRAKWRREEKLRNQRR 276
>sp|P26630|PAX6_DANRE Paired box protein Pax-6 OS=Danio rerio GN=pax6a PE=2 SV=1
Length = 437
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 107/161 (66%), Gaps = 24/161 (14%)
Query: 3 VSSINRVLRNLAAQKEQQASAHNQTSETVYDKLRMFNGQPG-WA----WYPGSTPPPSPA 57
VSSINRVLRNLA++K+Q + + +Y+KLRM NGQ G W WYPG++ P P
Sbjct: 139 VSSINRVLRNLASEKQQMGA------DGMYEKLRMLNGQTGTWGTRPGWYPGTSVPGQPN 192
Query: 58 HLALPHNPGSVTPISRDDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNE 117
+ G E+T+ I+S N +++QMRL+LKRKLQRNRTSFT E
Sbjct: 193 QDGCQQSDGG-----------GENTNSISS--NGEDSDETQMRLQLKRKLQRNRTSFTQE 239
Query: 118 QIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
QI++LEKEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 240 QIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 280
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 84/173 (48%), Gaps = 49/173 (28%)
Query: 132 PDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQKEQQASAHNQTSETVYDKLRM 187
P +FA R+RL + I VSSINRVLRNLA++K+Q + + +Y+KLRM
Sbjct: 114 PSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGA------DGMYEKLRM 167
Query: 188 FNGQPG-WA----WYPGSTPTPSPAHLALPHNPG------SVTPISRDD----------- 225
NGQ G W WYPG++ P + G S++ D
Sbjct: 168 LNGQTGTWGTRPGWYPGTSVPGQPNQDGCQQSDGGGENTNSISSNGEDSDETQMRLQLKR 227
Query: 226 -----------------AKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
KEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 228 KLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 280
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 16/99 (16%)
Query: 215 PGSVTPISRDDAKEFERTHYPDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQK 270
P TP +++R P +FA R+RL + I VSSINRVLRNLA++K
Sbjct: 95 PRVATPEVVGKIAQYKR-ECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEK 153
Query: 271 EQQASAHNQTSETVYDKLRMFNGQPG-W----AWYPGST 304
+Q ++ +Y+KLRM NGQ G W WYPG++
Sbjct: 154 QQMG------ADGMYEKLRMLNGQTGTWGTRPGWYPGTS 186
>sp|O18381|PAX6_DROME Paired box protein Pax-6 OS=Drosophila melanogaster GN=ey PE=2 SV=3
Length = 857
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 62/85 (72%)
Query: 74 DDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPD 133
D+ E + N ED Q RL LKRKLQRNRTSFTN+QIDSLEKEFERTHYPD
Sbjct: 397 DETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEKEFERTHYPD 456
Query: 134 VFARERLADKIGLPEARIQVSSINR 158
VFARERLA KIGLPEARIQV NR
Sbjct: 457 VFARERLAGKIGLPEARIQVWFSNR 481
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 31/35 (88%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
KEFERTHYPDVFARERLA KIGLPEARIQV NR
Sbjct: 447 KEFERTHYPDVFARERLAGKIGLPEARIQVWFSNR 481
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/22 (100%), Positives = 22/22 (100%)
Query: 339 QVWFSNRRAKWRREEKLRNQRR 360
QVWFSNRRAKWRREEKLRNQRR
Sbjct: 475 QVWFSNRRAKWRREEKLRNQRR 496
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFA---RERLADKIGLPEARI-QVSSINRVL 160
R + ++ ++ S +++R P +FA R+RL + I VSSINRVL
Sbjct: 121 RAIGGSKPRVATAEVVSKISQYKR-ECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVL 179
Query: 161 RNLAAQKE 168
RNLAAQKE
Sbjct: 180 RNLAAQKE 187
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 235 PDVFA---RERLADKIGLPEARI-QVSSINRVLRNLAAQKE 271
P +FA R+RL + I VSSINRVLRNLAAQKE
Sbjct: 147 PSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQKE 187
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Query: 3 VSSINRVLRNLAAQKE 18
VSSINRVLRNLAAQKE
Sbjct: 172 VSSINRVLRNLAAQKE 187
>sp|P47237|PAX6_CHICK Paired box protein Pax-6 (Fragment) OS=Gallus gallus GN=PAX6 PE=1
SV=1
Length = 216
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/61 (85%), Positives = 55/61 (90%)
Query: 98 QMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSIN 157
QMRL+LKRKLQRNRTSFT EQI++LEKEFERTHYPDVFARERLA KI LPEARIQV N
Sbjct: 1 QMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSN 60
Query: 158 R 158
R
Sbjct: 61 R 61
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 30/35 (85%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
KEFERTHYPDVFARERLA KI LPEARIQV NR
Sbjct: 27 KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 61
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 326 RDDAKGLVQQSARQVWFSNRRAKWRREEKLRNQRRGSTGS 365
R AK + ++ QVWFSNRRAKWRREEKLRNQRR ++ +
Sbjct: 42 RLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNT 81
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 81/165 (49%), Gaps = 26/165 (15%)
Query: 67 SVTPISRDDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEF 126
S+ I D + SD+ SEP+ L LKRK +R+RT+FT EQ++ LEK F
Sbjct: 187 SIDGILGDKGNRLDEGSDVESEPD----------LPLKRKQRRSRTTFTAEQLEELEKAF 236
Query: 127 ERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETVYDKLR 186
ERTHYPD++ RE LA + L EAR+QV NR A+ +QA A ++L
Sbjct: 237 ERTHYPDIYTREELAQRTKLTEARVQVWFSNR-----RARWRKQAGA---------NQLA 282
Query: 187 MFNGQPGWAWYPGSTPTPSPAHLALPHNPGSVTPISRDDAKEFER 231
FN + P PT P LP + T IS+D R
Sbjct: 283 AFNHLLPGGFPPTGMPTLPPYQ--LPDSTYPTTTISQDGGSTVHR 325
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 19/174 (10%)
Query: 122 LEKEFE--RTHYPDVFA---RERL-----ADKIGLPEARIQVSSINRVLR---NLAAQKE 168
+EK+ E + P +F+ R+RL D+ +P VSSI+RVLR +++
Sbjct: 114 VEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGL--VSSISRVLRIKFGKKEEED 171
Query: 169 QQASAHNQTSETVYDKLRMFNGQPGWAWYPGSTPTPSPAHLALPHNPGSVTPISRDDAKE 228
+ + + + G G GS P S T + + +E
Sbjct: 172 EADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEE 231
Query: 229 ----FERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHN 278
FERTHYPD++ RE LA + L EAR+QV NR R Q +A N
Sbjct: 232 LEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFN 285
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 339 QVWFSNRRAKWRRE 352
QVWFSNRRA+WR++
Sbjct: 262 QVWFSNRRARWRKQ 275
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 81/165 (49%), Gaps = 26/165 (15%)
Query: 67 SVTPISRDDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEF 126
S+ I D + SD+ SEP+ L LKRK +R+RT+FT EQ++ LEK F
Sbjct: 185 SIDGILGDKGNRLDEGSDVESEPD----------LPLKRKQRRSRTTFTAEQLEELEKAF 234
Query: 127 ERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETVYDKLR 186
ERTHYPD++ RE LA + L EAR+QV NR A+ +QA A ++L
Sbjct: 235 ERTHYPDIYTREELAQRTKLTEARVQVWFSNR-----RARWRKQAGA---------NQLA 280
Query: 187 MFNGQPGWAWYPGSTPTPSPAHLALPHNPGSVTPISRDDAKEFER 231
FN + P PT P LP + T IS+D R
Sbjct: 281 AFNHLLPGGFPPTGMPTLPPYQ--LPDSTYPTTTISQDGGSTVHR 323
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 339 QVWFSNRRAKWRRE 352
QVWFSNRRA+WR++
Sbjct: 260 QVWFSNRRARWRKQ 273
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 13/98 (13%)
Query: 67 SVTPISRDDAK---EHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLE 123
S+ I R+ A E E SDI+SEP+ L LKRK +R+RT+FT EQ++ LE
Sbjct: 163 SIDGILRERAPASPESEEGSDIDSEPD----------LPLKRKQRRSRTTFTAEQLEELE 212
Query: 124 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR 161
+ FERTHYPD++ RE LA + L EAR+QV NR R
Sbjct: 213 RAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 250
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR 264
+ FERTHYPD++ RE LA + L EAR+QV NR R
Sbjct: 213 RAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 250
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 339 QVWFSNRRAKWRRE 352
QVWFSNRRA+WR++
Sbjct: 241 QVWFSNRRARWRKQ 254
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 13/98 (13%)
Query: 67 SVTPISRDDAK---EHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLE 123
S+ I R+ A E E SDI+SEP+ L LKRK +R+RT+FT EQ++ LE
Sbjct: 187 SIDGILRERAPVSPESEEGSDIDSEPD----------LPLKRKQRRSRTTFTAEQLEELE 236
Query: 124 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR 161
+ FERTHYPD++ RE LA + L EAR+QV NR R
Sbjct: 237 RAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 274
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR 264
+ FERTHYPD++ RE LA + L EAR+QV NR R
Sbjct: 237 RAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 274
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 339 QVWFSNRRAKWRRE 352
QVWFSNRRA+WR++
Sbjct: 265 QVWFSNRRARWRKQ 278
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 55/84 (65%), Gaps = 10/84 (11%)
Query: 78 EHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFAR 137
E E SDI+SEP+ L LKRK +R+RT+FT EQ++ LE+ FERTHYPD++ R
Sbjct: 200 ESEEGSDIDSEPD----------LPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTR 249
Query: 138 ERLADKIGLPEARIQVSSINRVLR 161
E LA + L EAR+QV NR R
Sbjct: 250 EELAQRAKLTEARVQVWFSNRRAR 273
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR 264
+ FERTHYPD++ RE LA + L EAR+QV NR R
Sbjct: 236 RAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 273
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 339 QVWFSNRRAKWRRE 352
QVWFSNRRA+WR++
Sbjct: 264 QVWFSNRRARWRKQ 277
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 10/89 (11%)
Query: 73 RDDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYP 132
R A + + SDI+SEP+ L LKRK +R+RT+FT EQ++ LE+ FERTHYP
Sbjct: 195 RASAPQSDEGSDIDSEPD----------LPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
Query: 133 DVFARERLADKIGLPEARIQVSSINRVLR 161
D++ RE LA + L EAR+QV NR R
Sbjct: 245 DIYTREELAQRAKLTEARVQVWFSNRRAR 273
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR 264
+ FERTHYPD++ RE LA + L EAR+QV NR R
Sbjct: 236 RAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 273
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 32/90 (35%)
Query: 339 QVWFSNRRAKWRREEKLRNQRRGSTGSVNSANTTTSTTALDHVPPTSQSPPPSSRLPLNP 398
QVWFSNRRA+WR++ AN A +H L P
Sbjct: 264 QVWFSNRRARWRKQA--------------GAN---QLMAFNH---------------LIP 291
Query: 399 GGFNPSSMYSSIPQPAGMDSYNPSCLQQAA 428
GGF P++M + SY P+ + QA
Sbjct: 292 GGFPPTAMPTLPTYQLSETSYQPTSIPQAV 321
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 10/89 (11%)
Query: 73 RDDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYP 132
R A + + SDI+SEP+ L LKRK +R+RT+FT EQ++ LE+ FERTHYP
Sbjct: 195 RASAPQSDEGSDIDSEPD----------LPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
Query: 133 DVFARERLADKIGLPEARIQVSSINRVLR 161
D++ RE LA + L EAR+QV NR R
Sbjct: 245 DIYTREELAQRAKLTEARVQVWFSNRRAR 273
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR 264
+ FERTHYPD++ RE LA + L EAR+QV NR R
Sbjct: 236 RAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRAR 273
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 32/90 (35%)
Query: 339 QVWFSNRRAKWRREEKLRNQRRGSTGSVNSANTTTSTTALDHVPPTSQSPPPSSRLPLNP 398
QVWFSNRRA+WR++ AN A +H L P
Sbjct: 264 QVWFSNRRARWRKQA--------------GAN---QLMAFNH---------------LIP 291
Query: 399 GGFNPSSMYSSIPQPAGMDSYNPSCLQQAA 428
GGF P++M + SY P+ + QA
Sbjct: 292 GGFPPTAMPTLPTYQLSETSYQPTSIPQAV 321
>sp|P09082|GSB_DROME Protein gooseberry OS=Drosophila melanogaster GN=gsb PE=2 SV=1
Length = 427
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Query: 85 INSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKI 144
+ SE S ++D++ ++LKRK +R+RT+F+N+QID+LE+ F RT YPDV+ RE LA
Sbjct: 165 VGSEDES--EDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQST 222
Query: 145 GLPEARIQVSSINRVLR 161
GL EAR+QV NR R
Sbjct: 223 GLTEARVQVWFSNRRAR 239
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 217 SVTPISRD--DAKE--FERTHYPDVFARERLADKIGLPEARIQVSSINRVLR 264
S T S D DA E F RT YPDV+ RE LA GL EAR+QV NR R
Sbjct: 188 SRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRAR 239
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 51/77 (66%), Gaps = 7/77 (9%)
Query: 82 TSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLA 141
SD NS + ADE + KRK +R RT+FT+ Q++ LEK F RTHYPDVF RE LA
Sbjct: 67 VSDGNS--DCEADEYAP-----KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELA 119
Query: 142 DKIGLPEARIQVSSINR 158
KIGL EARIQV NR
Sbjct: 120 MKIGLTEARIQVWFQNR 136
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 26/35 (74%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
K F RTHYPDVF RE LA KIGL EARIQV NR
Sbjct: 102 KAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNR 136
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 339 QVWFSNRRAKWRREEKLRNQ 358
QVWF NRRAKWR++EK+ Q
Sbjct: 130 QVWFQNRRAKWRKQEKVGPQ 149
>sp|P09083|GSBN_DROME Protein gooseberry-neuro OS=Drosophila melanogaster GN=gsb-n PE=1
SV=2
Length = 449
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 72 SRDDAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHY 131
S D K++ + + +D +S+ + LKRK +R+RT+FT EQ+++LE+ F RT Y
Sbjct: 147 SEDGRKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERAFSRTQY 206
Query: 132 PDVFARERLADKIGLPEARIQVSSINRVLR 161
PDV+ RE LA L EARIQV NR R
Sbjct: 207 PDVYTREELAQTTALTEARIQVWFSNRRAR 236
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 23/38 (60%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR 264
+ F RT YPDV+ RE LA L EARIQV NR R
Sbjct: 199 RAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRAR 236
>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila melanogaster GN=prd PE=1
SV=1
Length = 613
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 10/82 (12%)
Query: 80 ESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARER 139
E SD SEP + LKRK +R RT+F+ Q+D LE+ FERT YPD++ RE
Sbjct: 196 EDISDCESEPG----------IALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREE 245
Query: 140 LADKIGLPEARIQVSSINRVLR 161
LA + L EARIQV NR R
Sbjct: 246 LAQRTNLTEARIQVWFSNRRAR 267
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR 264
+ FERT YPD++ RE LA + L EARIQV NR R
Sbjct: 230 RAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRAR 267
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 91 SSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEAR 150
S +D++ Q K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R
Sbjct: 512 SGSDDEGQDDNCAKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVR 571
Query: 151 IQVSSINR 158
+QV NR
Sbjct: 572 VQVWFQNR 579
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 545 RAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNR 579
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 68/181 (37%), Gaps = 34/181 (18%)
Query: 339 QVWFSNRRAKWRREEKLRNQRRGSTGSVNSANTTTSTTALDHVPPTSQSPPPSSRLPLNP 398
QVWF NRRAKWRR+EK + R G T + + V P SPP S LP
Sbjct: 573 QVWFQNRRAKWRRQEKSESLRLGLTHFTQLPHRLGCGASGLPVDPW-LSPPLLSALP--- 628
Query: 399 GGF--NPSSMY-SSIPQPAGMDSYNPSCLQQAAREHHH----------------HSSYSY 439
GF +P ++Y S + P + N + AA HHH
Sbjct: 629 -GFLSHPQTVYPSYLTPPLSLAPGNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPP 687
Query: 440 MFHDSLHSLQSAYQRAAPAAHSSPH-----PHPA-----HPGSSPYGTSNSVNGPPTSTG 489
P +H SPH PH H G +P GT + PP+ST
Sbjct: 688 PPPPHGVPHPHGSHHVVPLSHLSPHLSRMSPHATSLGSPHHGVTPLGTPLHSSLPPSSTA 747
Query: 490 T 490
T
Sbjct: 748 T 748
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 91 SSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEAR 150
SS D D L+RK +RNRT+FT +Q+++LE F +THYPDVF RE LA KI L EAR
Sbjct: 20 SSGDFDDGF---LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEAR 76
Query: 151 IQVSSINR 158
+QV NR
Sbjct: 77 VQVWFQNR 84
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 229 FERTHYPDVFARERLADKIGLPEARIQVSSINR 261
F +THYPDVF RE LA KI L EAR+QV NR
Sbjct: 52 FAQTHYPDVFTREELAMKINLTEARVQVWFQNR 84
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 339 QVWFSNRRAKWRREEK 354
QVWF NRRAKWR+ E+
Sbjct: 78 QVWFQNRRAKWRKTER 93
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 92 SADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARI 151
SA DS+ L LKRK +R RT+FT+ Q++ LE+ F++THYPDVF RE LA ++ L EAR+
Sbjct: 318 SAGSDSEEGL-LKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARV 376
Query: 152 QVSSINR 158
QV NR
Sbjct: 377 QVWFQNR 383
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ F++THYPDVF RE LA ++ L EAR+QV NR
Sbjct: 349 RAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNR 383
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 339 QVWFSNRRAKWRREEKLRNQ 358
QVWF NRRAKWR+ EK Q
Sbjct: 377 QVWFQNRRAKWRKREKAGAQ 396
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 92 SADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARI 151
SA DS+ L LKRK +R RT+FT+ Q++ LE+ F++THYPDVF RE LA ++ L EAR+
Sbjct: 314 SAGSDSEEGL-LKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARV 372
Query: 152 QVSSINR 158
QV NR
Sbjct: 373 QVWFQNR 379
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ F++THYPDVF RE LA ++ L EAR+QV NR
Sbjct: 345 RAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNR 379
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 339 QVWFSNRRAKWRREEKLRNQ 358
QVWF NRRAKWR+ EK Q
Sbjct: 373 QVWFQNRRAKWRKREKAGAQ 392
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 43/56 (76%)
Query: 103 LKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
L+RK +RNRT+FT +Q+++LE F +THYPDVF RE LA KI L EAR+QV NR
Sbjct: 29 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNR 84
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 229 FERTHYPDVFARERLADKIGLPEARIQVSSINR 261
F +THYPDVF RE LA KI L EAR+QV NR
Sbjct: 52 FAQTHYPDVFTREELAMKINLTEARVQVWFQNR 84
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 339 QVWFSNRRAKWRREEK 354
QVWF NRRAKWR+ E+
Sbjct: 78 QVWFQNRRAKWRKTER 93
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 92 SADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARI 151
SA DS+ L LKRK +R RT+FT+ Q++ LE+ F++THYPDVF RE LA ++ L EAR+
Sbjct: 316 SAGSDSEEGL-LKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARV 374
Query: 152 QVSSINR 158
QV NR
Sbjct: 375 QVWFQNR 381
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ F++THYPDVF RE LA ++ L EAR+QV NR
Sbjct: 347 RAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNR 381
Score = 36.2 bits (82), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 339 QVWFSNRRAKWRREEK 354
QVWF NRRAKWR+ EK
Sbjct: 375 QVWFQNRRAKWRKREK 390
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 75 DAKEHESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDV 134
D E D P ++A+E+ K+K +RNRT+FT Q+ LE+ FE++HYPDV
Sbjct: 9 DLGELRKPGDSEGTPPAAAEEEQP-----KKKHRRNRTTFTTYQLHELERAFEKSHYPDV 63
Query: 135 FARERLADKIGLPEARIQVSSINR 158
++RE LA K+ LPE R+QV NR
Sbjct: 64 YSREELAMKVNLPEVRVQVWFQNR 87
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 53 RAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNR 87
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 339 QVWFSNRRAKWRREEKLRNQRRGSTGSVNSANTTTSTTALDHVPPTSQSPPPSSRLPLNP 398
QVWF NRRAKWRR+EK+ S+ ++ T + + P T+ P S+ LPL+P
Sbjct: 81 QVWFQNRRAKWRRQEKM----EASSMKLHD----TPMLSFNRPPMTANVGPMSNSLPLDP 132
Query: 399 GGFNPSS 405
+P S
Sbjct: 133 WLTSPIS 139
>sp|Q94398|HM08_CAEEL Homeobox protein ceh-8 OS=Caenorhabditis elegans GN=ceh-8 PE=4 SV=3
Length = 276
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 9/92 (9%)
Query: 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164
+K +RNRT+FT Q+ +LE F++THYPDV+ARE LA K+ LPE R+QV NR +
Sbjct: 58 KKQRRNRTTFTTFQLHALEAAFDKTHYPDVYARETLAAKVQLPEVRVQVWFQNRRAK--- 114
Query: 165 AQKEQQASAHNQTSETVYDKLRMFNGQPGWAW 196
+++++ + ++ D + P W+W
Sbjct: 115 FRRQEKQDCQGEEKHSLKDTM------PSWSW 140
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 229 FERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETVYDKL 288
F++THYPDV+ARE LA K+ LPE R+QV NR + +++++ + ++ D +
Sbjct: 79 FDKTHYPDVYARETLAAKVQLPEVRVQVWFQNRRAK---FRRQEKQDCQGEEKHSLKDTM 135
Query: 289 RMFNGQPGWAW 299
P W+W
Sbjct: 136 ------PSWSW 140
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 329 AKGLVQQSARQVWFSNRRAKWRREEK 354
AK + + QVWF NRRAK+RR+EK
Sbjct: 95 AKVQLPEVRVQVWFQNRRAKFRRQEK 120
>sp|Q8NFW5|DMBX1_HUMAN Diencephalon/mesencephalon homeobox protein 1 OS=Homo sapiens
GN=DMBX1 PE=1 SV=1
Length = 382
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 65/118 (55%), Gaps = 14/118 (11%)
Query: 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR--- 161
RK +R+RT+FT +Q+++LEK F++THYPDV RERLA LPEAR+QV NR +
Sbjct: 69 RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRK 128
Query: 162 --------NLAAQKEQQASAHNQTSETVYDKLRMFNGQPGWAWYPGSTPTPSPAHLAL 211
L QKE + S +E ++ QP PGS P P+ HL+L
Sbjct: 129 KQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQP--PRLPGSDP-PAELHLSL 183
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR-----------NLAAQKEQQAS 275
K F++THYPDV RERLA LPEAR+QV NR + L QKE + S
Sbjct: 88 KTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGS 147
Query: 276 AHNQTSETVYDKLRMFNGQPGWAWYPGSTPTPSPAHLAL 314
+E ++ QP PGS P P+ HL+L
Sbjct: 148 HGEGKAEAPTPDTQLDTEQP--PRLPGSDP-PAELHLSL 183
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 20/88 (22%)
Query: 339 QVWFSNRRAKWRR------EEKLRNQR--RGSTGSVNSANTTTSTTALDHVPPTSQSPPP 390
QVWF NRRAK+R+ +E+L+ Q+ GS G A T T LD ++ PP
Sbjct: 116 QVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGSHGE-GKAEAPTPDTQLD-----TEQPP- 168
Query: 391 SSRLPLNPGGFNPSSMYSSIPQPAGMDS 418
RL PG P+ ++ S+ + + +S
Sbjct: 169 --RL---PGSDPPAELHLSLSEQSASES 191
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNL 163
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 132 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNR----- 186
Query: 164 AAQKEQQASAHNQTSETVYDKLRMFNGQPGWAWYPGSTPTPSPAHLALPHNPGSVTPIS 222
A+ +Q T + +R FN P P P +LP +P +P+S
Sbjct: 187 RAKWRRQEKMDTGTMKLHDSPIRSFN-------RPPMAPNVGPMSNSLPLDPWLSSPLS 238
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETVYD 286
+ FE++HYPDV++RE LA K+ LPE R+QV NR A+ +Q T +
Sbjct: 152 RAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNR-----RAKWRRQEKMDTGTMKLHDS 206
Query: 287 KLRMFNGQPGWAWYPGSTPTPSPAHLALPHNPGSVTPIS 325
+R FN P P P +LP +P +P+S
Sbjct: 207 PIRSFN-------RPPMAPNVGPMSNSLPLDPWLSSPLS 238
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 339 QVWFSNRRAKWRREEKLRNQRRGSTGSVNSANTTTSTTALDHVPPTSQSPPPSSRLPLNP 398
QVWF NRRAKWRR+EK+ TG++ ++ + + P P S+ LPL+P
Sbjct: 180 QVWFQNRRAKWRRQEKM------DTGTMKLHDSPIR--SFNRPPMAPNVGPMSNSLPLDP 231
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 42/55 (76%)
Query: 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELATKVNLPEVRVQVWFQNR 188
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 154 RAFEKSHYPDVYSREELATKVNLPEVRVQVWFQNR 188
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 16/17 (94%)
Query: 339 QVWFSNRRAKWRREEKL 355
QVWF NRRAKWRR+EK+
Sbjct: 182 QVWFQNRRAKWRRQEKM 198
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 42/55 (76%)
Query: 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNR 187
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 153 RAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNR 187
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 325 SRDDAKGLVQ--QSARQVWFSNRRAKWRREEKL 355
SR++ G V + QVWF NRRAKWRR+EKL
Sbjct: 165 SREELAGKVNLPEVRVQVWFQNRRAKWRRQEKL 197
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 12/119 (10%)
Query: 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNL 163
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNR----- 188
Query: 164 AAQKEQQASAHNQTSETVYDKLRMFNGQPGWAWYPGSTPTPSPAHLALPHNPGSVTPIS 222
A+ +Q T + + FN P PT P + +LP +P +P+S
Sbjct: 189 RAKWRRQEKIDASTMKLHDSPMLSFN-------RPSMHPTVGPMNNSLPLDPWLPSPLS 240
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETVYD 286
+ FE++HYPDV++RE LA K+ LPE R+QV NR A+ +Q T +
Sbjct: 154 RAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNR-----RAKWRRQEKIDASTMKLHDS 208
Query: 287 KLRMFNGQPGWAWYPGSTPTPSPAHLALPHNPGSVTPIS 325
+ FN P PT P + +LP +P +P+S
Sbjct: 209 PMLSFN-------RPSMHPTVGPMNNSLPLDPWLPSPLS 240
Score = 39.3 bits (90), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 16/17 (94%)
Query: 339 QVWFSNRRAKWRREEKL 355
QVWF NRRAKWRR+EK+
Sbjct: 182 QVWFQNRRAKWRRQEKI 198
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNL 163
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QV NR +
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWR 193
Query: 164 AAQKEQQASAHNQTSETV 181
+K + +S Q S +
Sbjct: 194 RQEKLEVSSMKLQDSPLL 211
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETV 284
+ FE++HYPDV++RE LA K+ LPE R+QV NR + +K + +S Q S +
Sbjct: 154 RAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLL 211
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 325 SRDDAKGLVQ--QSARQVWFSNRRAKWRREEKL 355
SR++ G V + QVWF NRRAKWRR+EKL
Sbjct: 166 SREELAGKVNLPEVRVQVWFQNRRAKWRRQEKL 198
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNL 163
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QV NR +
Sbjct: 119 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWR 178
Query: 164 AAQKEQQASAHNQTSETV 181
+K + +S Q S +
Sbjct: 179 RQEKLEVSSMKLQDSPIL 196
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETV 284
+ FE++HYPDV++RE LA K+ LPE R+QV NR + +K + +S Q S +
Sbjct: 139 RAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPIL 196
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 339 QVWFSNRRAKWRREEKL 355
QVWF NRRAKWRR+EKL
Sbjct: 167 QVWFQNRRAKWRRQEKL 183
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 92 SADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARI 151
SA DS+ + LKRK +R RT+FT+ Q++ LE+ F++THYPDVF RE LA ++ L EAR+
Sbjct: 201 SAGSDSEEGM-LKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARV 259
Query: 152 QVSSINR 158
QV NR
Sbjct: 260 QVWFQNR 266
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ F++THYPDVF RE LA ++ L EAR+QV NR
Sbjct: 232 RAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNR 266
Score = 36.2 bits (82), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 339 QVWFSNRRAKWRREEK 354
QVWF NRRAKWR+ EK
Sbjct: 260 QVWFQNRRAKWRKREK 275
>sp|O15266|SHOX_HUMAN Short stature homeobox protein OS=Homo sapiens GN=SHOX PE=1 SV=1
Length = 292
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 9/79 (11%)
Query: 80 ESTSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARER 139
E D+ SE DED Q +L K +R+RT+FT EQ++ LE+ F+ THYPD F RE
Sbjct: 99 EKREDVKSE-----DEDGQTKL----KQRRSRTNFTLEQLNELERLFDETHYPDAFMREE 149
Query: 140 LADKIGLPEARIQVSSINR 158
L+ ++GL EAR+QV NR
Sbjct: 150 LSQRLGLSEARVQVWFQNR 168
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 229 FERTHYPDVFARERLADKIGLPEARIQVSSINR 261
F+ THYPD F RE L+ ++GL EAR+QV NR
Sbjct: 136 FDETHYPDAFMREELSQRLGLSEARVQVWFQNR 168
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNL 163
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QV NR +
Sbjct: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWR 192
Query: 164 AAQKEQQASAHNQTS 178
+K + +S Q S
Sbjct: 193 RQEKLEVSSMKLQDS 207
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTS 281
+ FE++HYPDV++RE LA K+ LPE R+QV NR + +K + +S Q S
Sbjct: 153 RAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDS 207
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 325 SRDDAKGLVQ--QSARQVWFSNRRAKWRREEKL 355
SR++ G V + QVWF NRRAKWRR+EKL
Sbjct: 165 SREELAGKVNLPEVRVQVWFQNRRAKWRRQEKL 197
>sp|Q62798|DRGX_RAT Dorsal root ganglia homeobox protein OS=Rattus norvegicus GN=Drgx
PE=2 SV=1
Length = 263
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 103 LKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
L+RK +RNRT+F +Q+++LE F +THYPDVF RE LA KI L EAR+QV NR
Sbjct: 29 LRRKQRRNRTTFALQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNR 84
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 229 FERTHYPDVFARERLADKIGLPEARIQVSSINR 261
F +THYPDVF RE LA KI L EAR+QV NR
Sbjct: 52 FAQTHYPDVFTREELAMKINLTEARVQVWFQNR 84
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 339 QVWFSNRRAKWRREEK 354
QVWF NRRAKWR+ E+
Sbjct: 78 QVWFQNRRAKWRKTER 93
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 6/78 (7%)
Query: 81 STSDINSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERL 140
++SD+ S P AD +S K K +RNRT+FT+ Q++ LEK F++THYPDV+ARE+L
Sbjct: 194 ASSDLPS-PLEKADSESN-----KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQL 247
Query: 141 ADKIGLPEARIQVSSINR 158
A + L EAR+QV NR
Sbjct: 248 AMRTDLTEARVQVWFQNR 265
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
K F++THYPDV+ARE+LA + L EAR+QV NR
Sbjct: 231 KVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNR 265
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 339 QVWFSNRRAKWRREEKL 355
QVWF NRRAKWR+ E+
Sbjct: 259 QVWFQNRRAKWRKRERF 275
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 42/55 (76%)
Query: 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 127 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNR 181
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 147 RAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNR 181
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 339 QVWFSNRRAKWRREEKL 355
QVWF NRRAKWRR+EKL
Sbjct: 175 QVWFQNRRAKWRRQEKL 191
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 55/97 (56%)
Query: 87 SEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGL 146
S P S DS + K K +RNRT+F+ Q++ LEK F++THYPDV+ARE+LA + L
Sbjct: 133 SVPLSPGLPDSMELAKTKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDL 192
Query: 147 PEARIQVSSINRVLRNLAAQKEQQASAHNQTSETVYD 183
EAR+QV NR + ++ + T YD
Sbjct: 193 TEARVQVWFQNRRAKWRKRERYGKMQEGRNPFTTAYD 229
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETVYD 286
K F++THYPDV+ARE+LA + L EAR+QV NR + ++ + T YD
Sbjct: 170 KVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKMQEGRNPFTTAYD 229
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 339 QVWFSNRRAKWRREEKLRNQRRG 361
QVWF NRRAKWR+ E+ + G
Sbjct: 198 QVWFQNRRAKWRKRERYGKMQEG 220
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNL 163
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QV NR +
Sbjct: 103 KKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWR 162
Query: 164 AAQKEQQASAHNQTSETV----YDKLRMFNGQPGWAWYPGSTPT 203
+K + +S Q S + L + +G P W G T
Sbjct: 163 RQEKLEVSSIKLQESSMLSIPRSGPLSLGSGLPLEPWLTGPIST 206
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETV-- 284
+ FE++HYPDV++RE LA K+ LPE R+QV NR + +K + +S Q S +
Sbjct: 123 RAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSIKLQESSMLSI 182
Query: 285 --YDKLRMFNGQPGWAWYPGSTPT 306
L + +G P W G T
Sbjct: 183 PRSGPLSLGSGLPLEPWLTGPIST 206
Score = 39.7 bits (91), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 339 QVWFSNRRAKWRREEKL 355
QVWF NRRAKWRR+EKL
Sbjct: 151 QVWFQNRRAKWRRQEKL 167
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 42/55 (76%)
Query: 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 139 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNR 193
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 159 RAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNR 193
Score = 39.3 bits (90), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 16/17 (94%)
Query: 339 QVWFSNRRAKWRREEKL 355
QVWF NRRAKWRR+EK+
Sbjct: 187 QVWFQNRRAKWRRQEKM 203
>sp|Q91V10|VSX1_MOUSE Visual system homeobox 1 OS=Mus musculus GN=Vsx1 PE=2 SV=1
Length = 363
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 80 ESTSDINSEPNSSADEDSQMRLRL-KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARE 138
ES S + + S D +M L L KRK +R+RT FT Q++ LEK F HYPDV+ARE
Sbjct: 143 ESVSTSDGDSPSEEKNDPKMSLILGKRKKRRHRTVFTAHQLEELEKAFGEAHYPDVYARE 202
Query: 139 RLADKIGLPEARIQVSSINR 158
LA K LPE RIQV NR
Sbjct: 203 MLAAKTELPEDRIQVWFQNR 222
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 23/35 (65%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
K F HYPDV+ARE LA K LPE RIQV NR
Sbjct: 188 KAFGEAHYPDVYAREMLAAKTELPEDRIQVWFQNR 222
Score = 35.8 bits (81), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 339 QVWFSNRRAKWRREEK 354
QVWF NRRAKWR+ EK
Sbjct: 216 QVWFQNRRAKWRKREK 231
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 5/70 (7%)
Query: 89 PNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPE 148
P AD +S K K +RNRT+FT+ Q++ LEK F++THYPDV+ARE+LA + L E
Sbjct: 187 PMEKADSESN-----KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTE 241
Query: 149 ARIQVSSINR 158
AR+QV NR
Sbjct: 242 ARVQVWFQNR 251
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
K F++THYPDV+ARE+LA + L EAR+QV NR
Sbjct: 217 KVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNR 251
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 339 QVWFSNRRAKWRREEKL 355
QVWF NRRAKWR+ E+
Sbjct: 245 QVWFQNRRAKWRKRERF 261
>sp|Q91ZK4|DMBX1_MOUSE Diencephalon/mesencephalon homeobox protein 1 OS=Mus musculus
GN=Dmbx1 PE=1 SV=1
Length = 381
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
RK +R+RT+FT +Q+++LEK F++THYPDV RERLA LPEAR+QV NR
Sbjct: 69 RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNR 122
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 25/35 (71%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
K F++THYPDV RERLA LPEAR+QV NR
Sbjct: 88 KTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNR 122
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 42/55 (76%)
Query: 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 127 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNR 181
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ FE++HYPDV++RE LA K+ LPE R+QV NR
Sbjct: 147 RAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNR 181
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 339 QVWFSNRRAKWRREEKL 355
QVWF NRRAKWRR+EKL
Sbjct: 175 QVWFQNRRAKWRRQEKL 191
>sp|Q63410|OTX1_RAT Homeobox protein OTX1 OS=Rattus norvegicus GN=Otx1 PE=2 SV=1
Length = 355
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164
RK +R RT+FT Q+D LE F +T YPD+F RE +A KI LPE+R+QV NR A
Sbjct: 36 RKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNR----RA 91
Query: 165 AQKEQQASAHNQTSETVYDK 184
++QQ S + S V K
Sbjct: 92 KCRQQQQSGNGTKSRPVKKK 111
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 229 FERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETVYDK 287
F +T YPD+F RE +A KI LPE+R+QV NR A ++QQ S + S V K
Sbjct: 57 FAKTRYPDIFMREEVALKINLPESRVQVWFKNR----RAKCRQQQQSGNGTKSRPVKKK 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.125 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,042,158
Number of Sequences: 539616
Number of extensions: 8945554
Number of successful extensions: 39691
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 396
Number of HSP's that attempted gapping in prelim test: 36539
Number of HSP's gapped (non-prelim): 3364
length of query: 490
length of database: 191,569,459
effective HSP length: 122
effective length of query: 368
effective length of database: 125,736,307
effective search space: 46270960976
effective search space used: 46270960976
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)