Query psy2181
Match_columns 490
No_of_seqs 484 out of 2269
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 18:20:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0490|consensus 99.7 2.6E-18 5.6E-23 166.7 7.6 154 103-270 56-213 (235)
2 KOG0484|consensus 99.7 3.8E-18 8.2E-23 145.1 1.1 71 100-170 10-80 (125)
3 KOG0488|consensus 99.6 4.9E-16 1.1E-20 158.5 6.8 68 103-170 168-235 (309)
4 KOG0484|consensus 99.6 6.4E-16 1.4E-20 131.6 5.6 45 212-256 15-63 (125)
5 KOG0842|consensus 99.6 8.7E-16 1.9E-20 155.0 6.5 70 103-172 149-218 (307)
6 KOG0494|consensus 99.6 6.6E-16 1.4E-20 150.1 5.0 65 106-170 140-204 (332)
7 KOG2251|consensus 99.6 6.7E-16 1.4E-20 147.7 4.7 67 103-169 33-99 (228)
8 KOG0489|consensus 99.6 2.7E-16 5.7E-21 157.3 1.5 67 105-171 157-223 (261)
9 KOG0489|consensus 99.5 1.7E-15 3.7E-20 151.5 1.8 62 212-273 157-222 (261)
10 KOG0848|consensus 99.5 3E-15 6.4E-20 146.3 2.3 64 216-279 201-268 (317)
11 KOG0843|consensus 99.5 1.3E-14 2.9E-19 134.8 4.7 64 106-169 101-164 (197)
12 KOG0487|consensus 99.5 1.5E-14 3.1E-19 146.2 5.1 66 105-170 233-298 (308)
13 KOG0487|consensus 99.5 1.4E-14 3.1E-19 146.3 4.7 63 212-274 233-299 (308)
14 KOG0850|consensus 99.5 2.1E-14 4.6E-19 138.0 4.5 66 104-169 119-184 (245)
15 KOG0485|consensus 99.4 6.2E-14 1.3E-18 133.5 5.2 66 106-171 103-168 (268)
16 KOG2251|consensus 99.4 6.9E-13 1.5E-17 127.2 12.1 62 209-270 32-97 (228)
17 KOG0850|consensus 99.4 1.1E-13 2.3E-18 133.3 5.7 61 212-272 120-184 (245)
18 KOG0842|consensus 99.4 8.3E-14 1.8E-18 140.7 5.1 64 210-273 149-216 (307)
19 KOG0492|consensus 99.4 1.3E-13 2.9E-18 130.6 5.9 67 105-171 142-208 (246)
20 KOG0494|consensus 99.4 8.1E-14 1.8E-18 135.7 4.0 41 216-256 143-187 (332)
21 KOG0843|consensus 99.4 9.3E-14 2E-18 129.2 4.2 60 213-272 101-164 (197)
22 KOG0849|consensus 99.4 9.3E-14 2E-18 144.5 3.5 72 96-167 165-236 (354)
23 KOG0848|consensus 99.4 9.3E-14 2E-18 135.9 2.2 67 105-171 197-263 (317)
24 PF00046 Homeobox: Homeobox do 99.4 1.6E-13 3.5E-18 105.6 2.9 57 108-164 1-57 (57)
25 KOG0488|consensus 99.4 2.4E-13 5.1E-18 138.9 4.2 61 212-272 170-234 (309)
26 TIGR01565 homeo_ZF_HD homeobox 99.4 9.3E-13 2E-17 102.5 5.3 52 108-159 2-57 (58)
27 KOG0493|consensus 99.3 1.5E-12 3.2E-17 127.1 6.9 60 108-167 247-306 (342)
28 KOG0486|consensus 99.3 7.9E-13 1.7E-17 132.1 4.6 68 105-172 110-177 (351)
29 KOG0844|consensus 99.3 1.6E-12 3.4E-17 129.2 5.2 60 107-166 181-240 (408)
30 KOG0492|consensus 99.3 1.8E-12 3.9E-17 123.0 5.3 62 212-273 142-207 (246)
31 KOG0490|consensus 99.3 1.4E-12 3E-17 126.6 4.5 59 212-270 58-120 (235)
32 KOG0491|consensus 99.2 8.7E-13 1.9E-17 121.0 -0.2 65 106-170 99-163 (194)
33 KOG0485|consensus 99.2 2.6E-12 5.7E-17 122.6 3.0 62 210-271 100-165 (268)
34 smart00389 HOX Homeodomain. DN 99.2 4.8E-12 1E-16 96.6 2.6 54 109-162 2-55 (56)
35 KOG0486|consensus 99.2 5.8E-12 1.3E-16 125.9 2.1 47 210-256 108-158 (351)
36 cd00086 homeodomain Homeodomai 99.2 1.3E-11 2.9E-16 94.8 3.2 56 109-164 2-57 (59)
37 KOG0493|consensus 99.2 1E-11 2.2E-16 121.2 2.6 58 213-270 245-306 (342)
38 PF00046 Homeobox: Homeobox do 99.2 1.8E-11 3.8E-16 94.2 3.1 53 215-267 1-57 (57)
39 COG5576 Homeodomain-containing 99.1 3.5E-11 7.7E-16 111.6 4.4 68 105-172 49-116 (156)
40 KOG4577|consensus 99.1 3.6E-11 7.9E-16 118.9 3.7 66 105-170 165-230 (383)
41 KOG4577|consensus 99.1 4.8E-10 1.1E-14 111.0 11.3 58 213-270 166-227 (383)
42 TIGR01565 homeo_ZF_HD homeobox 99.1 8E-11 1.7E-15 91.7 4.6 48 215-262 2-57 (58)
43 KOG0844|consensus 99.1 2.3E-11 4.9E-16 121.0 1.5 58 213-270 180-241 (408)
44 KOG0483|consensus 99.0 7E-11 1.5E-15 113.4 2.5 59 113-171 56-114 (198)
45 KOG3802|consensus 99.0 2.9E-10 6.2E-15 117.6 4.7 63 105-167 292-354 (398)
46 KOG0491|consensus 99.0 9.1E-11 2E-15 107.9 0.9 60 214-273 100-163 (194)
47 KOG3802|consensus 99.0 5.1E-09 1.1E-13 108.5 13.0 57 213-269 293-353 (398)
48 KOG0847|consensus 99.0 1.8E-10 3.8E-15 110.3 1.5 68 103-170 163-230 (288)
49 smart00389 HOX Homeodomain. DN 98.9 6.4E-10 1.4E-14 84.8 2.6 50 216-265 2-55 (56)
50 cd00086 homeodomain Homeodomai 98.9 1.1E-09 2.4E-14 84.0 3.4 52 216-267 2-57 (59)
51 KOG0483|consensus 98.8 2.8E-09 6E-14 102.4 3.9 55 219-273 55-113 (198)
52 COG5576 Homeodomain-containing 98.8 3.5E-09 7.6E-14 98.4 4.3 60 214-273 51-114 (156)
53 KOG0849|consensus 98.7 4.6E-09 1E-13 109.6 3.6 139 128-270 87-236 (354)
54 KOG0847|consensus 98.6 1.4E-08 3E-13 97.5 3.2 54 216-269 169-226 (288)
55 KOG1168|consensus 98.4 1.5E-07 3.2E-12 93.7 3.5 63 106-168 308-370 (385)
56 KOG3862|consensus 98.2 5.9E-07 1.3E-11 88.8 2.6 126 2-138 124-250 (327)
57 KOG0775|consensus 98.1 1.4E-06 3.1E-11 86.3 3.6 54 114-167 183-236 (304)
58 KOG1168|consensus 98.1 3E-06 6.4E-11 84.6 4.3 59 213-271 308-370 (385)
59 PF05920 Homeobox_KN: Homeobox 97.9 3.5E-06 7.6E-11 61.0 0.7 33 232-264 8-40 (40)
60 KOG0774|consensus 97.8 1.6E-05 3.5E-10 78.5 3.2 63 108-170 189-254 (334)
61 KOG0775|consensus 97.7 0.00012 2.6E-09 73.0 7.5 40 225-264 191-230 (304)
62 PF05920 Homeobox_KN: Homeobox 97.6 1.1E-05 2.4E-10 58.4 -0.4 34 128-161 7-40 (40)
63 KOG0774|consensus 97.5 0.0001 2.2E-09 73.0 4.9 60 214-273 188-254 (334)
64 KOG2252|consensus 97.3 0.00014 3.1E-09 78.5 2.8 57 106-162 419-475 (558)
65 KOG1146|consensus 96.8 0.0014 3.1E-08 76.9 4.9 61 106-166 704-764 (1406)
66 KOG2252|consensus 96.6 0.0015 3.3E-08 70.8 3.3 58 208-265 414-475 (558)
67 KOG1146|consensus 96.3 0.002 4.3E-08 75.8 2.7 63 107-169 903-965 (1406)
68 KOG3623|consensus 95.7 0.0067 1.5E-07 67.6 2.7 51 114-165 564-614 (1007)
69 KOG0773|consensus 95.1 0.014 3.1E-07 60.6 3.0 41 232-272 264-304 (342)
70 KOG3623|consensus 94.2 0.033 7.2E-07 62.3 3.0 44 224-267 570-613 (1007)
71 KOG0773|consensus 93.9 0.041 8.9E-07 57.2 2.9 61 107-167 239-302 (342)
72 KOG3755|consensus 91.8 0.18 4E-06 55.5 4.3 56 214-269 647-710 (769)
73 KOG3517|consensus 91.3 0.16 3.5E-06 50.5 3.0 16 2-17 119-134 (334)
74 PF11569 Homez: Homeodomain le 90.8 0.06 1.3E-06 41.9 -0.4 41 119-159 10-50 (56)
75 PF11569 Homez: Homeodomain le 85.3 0.26 5.6E-06 38.4 -0.0 38 225-262 13-50 (56)
76 PF04218 CENP-B_N: CENP-B N-te 76.3 2.3 5E-05 32.5 2.4 45 109-158 2-46 (53)
77 PF04218 CENP-B_N: CENP-B N-te 53.5 8.8 0.00019 29.2 1.7 43 215-262 1-47 (53)
78 PF04967 HTH_10: HTH DNA bindi 43.3 29 0.00064 26.7 3.1 38 114-151 1-40 (53)
79 KOG3755|consensus 39.8 9.7 0.00021 42.6 0.0 57 107-163 647-707 (769)
80 KOG1103|consensus 30.1 2.4E+02 0.0052 30.1 8.2 14 466-479 530-543 (561)
81 KOG1924|consensus 27.7 3.7E+02 0.0081 31.8 9.7 13 342-354 490-502 (1102)
82 PF04545 Sigma70_r4: Sigma-70, 22.3 46 0.001 24.4 1.1 38 113-155 4-41 (50)
83 PF10668 Phage_terminase: Phag 21.9 29 0.00063 27.5 -0.1 21 239-259 24-44 (60)
84 PF01527 HTH_Tnp_1: Transposas 20.0 25 0.00053 27.8 -0.9 42 110-155 3-44 (76)
No 1
>KOG0490|consensus
Probab=99.74 E-value=2.6e-18 Score=166.70 Aligned_cols=154 Identities=26% Similarity=0.259 Sum_probs=115.5
Q ss_pred hhcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHHHhhccCcchhhh
Q psy2181 103 LKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETVY 182 (490)
Q Consensus 103 ~~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~~~~~~~~~~~~~ 182 (490)
.+.+++|.|+.|+..|+++||+.|+..+|||.+.|+.||..+++++..|+|||||||+++++..+.-.. ..+.
T Consensus 56 ~~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~~~~~-------~~~~ 128 (235)
T KOG0490|consen 56 FKFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEERPLPE-------GENL 128 (235)
T ss_pred hhccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhccccc-------cccC
Confidence 357788999999999999999999999999999999999999999999999999999999987641000 0000
Q ss_pred hhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhh----HHHHHhhCCCCHHHHHHHHHHcCCCcceeeeee
Q psy2181 183 DKLRMFNGQPGWAWYPGSTPTPSPAHLALPHNPGSVTPISRDD----AKEFERTHYPDVFARERLADKIGLPEARIQVSS 258 (490)
Q Consensus 183 ~k~~~~~g~pgwpwyp~s~~~~~p~~~~~~~~rr~rT~ft~eq----e~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWF 258 (490)
.. ..... ... ...............++.|+.|...+ +..|..++||+...+++|+..+++++..|++||
T Consensus 129 ~~---~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~ 201 (235)
T KOG0490|consen 129 PD---LSGTA-PPS---ASRDKLDKGPSNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWF 201 (235)
T ss_pred CC---CCCCC-Ccc---ccccccccCCCccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhc
Confidence 00 00000 000 00001111122345667788888754 667999999999999999999999999999999
Q ss_pred hhhHHHHHHHHH
Q psy2181 259 INRVLRNLAAQK 270 (490)
Q Consensus 259 qNRR~k~kk~~k 270 (490)
+|+|.+.++...
T Consensus 202 ~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 202 QNRRAKLRKHKR 213 (235)
T ss_pred ccHHHHHHhhcc
Confidence 999999987554
No 2
>KOG0484|consensus
Probab=99.69 E-value=3.8e-18 Score=145.11 Aligned_cols=71 Identities=44% Similarity=0.606 Sum_probs=66.0
Q ss_pred HhhhhcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHH
Q psy2181 100 RLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 170 (490)
Q Consensus 100 ~~~~~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~ 170 (490)
+...++|+||.||.||..||.+||+.|...+|||++.||+||.+|.|++.+|||||||||+|.+++++-..
T Consensus 10 ~l~ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr~a~ 80 (125)
T KOG0484|consen 10 GLTEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQERAAI 80 (125)
T ss_pred ChhHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999998876554
No 3
>KOG0488|consensus
Probab=99.62 E-value=4.9e-16 Score=158.51 Aligned_cols=68 Identities=31% Similarity=0.429 Sum_probs=63.8
Q ss_pred hhcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHH
Q psy2181 103 LKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 170 (490)
Q Consensus 103 ~~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~ 170 (490)
.++|+|+.||+||..||.+||+.|+++.|.+..+|++||..|||++.||++||||||+||||......
T Consensus 168 ~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~g~ 235 (309)
T KOG0488|consen 168 TPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAEGG 235 (309)
T ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHhhh
Confidence 34888889999999999999999999999999999999999999999999999999999999887743
No 4
>KOG0484|consensus
Probab=99.61 E-value=6.4e-16 Score=131.59 Aligned_cols=45 Identities=40% Similarity=0.631 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCh----hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeee
Q psy2181 212 PHNPGSVTPISR----DDAKEFERTHYPDVFARERLADKIGLPEARIQV 256 (490)
Q Consensus 212 ~~~rr~rT~ft~----eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqv 256 (490)
.++||-||.||. |||+.|..+||||+..||+||.+|+|+|++|||
T Consensus 15 rKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQV 63 (125)
T KOG0484|consen 15 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQV 63 (125)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHH
Confidence 357789999997 569999999999999999999999999999966
No 5
>KOG0842|consensus
Probab=99.60 E-value=8.7e-16 Score=154.96 Aligned_cols=70 Identities=27% Similarity=0.408 Sum_probs=65.0
Q ss_pred hhcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHHHh
Q psy2181 103 LKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQAS 172 (490)
Q Consensus 103 ~~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~~~ 172 (490)
.++++||.|..|+..|+-+||+.|+.++|++..+||.||..|.|++.||||||||||.|.||.++++...
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~~~ 218 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKALE 218 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhhhh
Confidence 3567777889999999999999999999999999999999999999999999999999999998887654
No 6
>KOG0494|consensus
Probab=99.59 E-value=6.6e-16 Score=150.09 Aligned_cols=65 Identities=49% Similarity=0.635 Sum_probs=60.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHH
Q psy2181 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 170 (490)
Q Consensus 106 K~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~ 170 (490)
|+|+.||.||..|+++||+.|+..+|||+.+|+-||.++.|.|.+|+|||||||+||+|.++.-.
T Consensus 140 kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg 204 (332)
T KOG0494|consen 140 KRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWG 204 (332)
T ss_pred ccccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcC
Confidence 44444999999999999999999999999999999999999999999999999999999887653
No 7
>KOG2251|consensus
Probab=99.59 E-value=6.7e-16 Score=147.69 Aligned_cols=67 Identities=48% Similarity=0.668 Sum_probs=63.8
Q ss_pred hhcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHH
Q psy2181 103 LKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 169 (490)
Q Consensus 103 ~~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~ 169 (490)
..||.||.||+|+..|+++||..|.+..|||++.||+||.+|+|.+.+|+|||.|||+|++++++.+
T Consensus 33 ~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 33 GPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred cchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 4688999999999999999999999999999999999999999999999999999999999987765
No 8
>KOG0489|consensus
Probab=99.59 E-value=2.7e-16 Score=157.32 Aligned_cols=67 Identities=31% Similarity=0.380 Sum_probs=62.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQA 171 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~~ 171 (490)
.+.||.||.||..||.+||++|..|.|.++..|.|||..|+|+|+|||||||||||||||..+....
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~~~ 223 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAKSS 223 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccccc
Confidence 4568899999999999999999999999999999999999999999999999999999998777653
No 9
>KOG0489|consensus
Probab=99.53 E-value=1.7e-15 Score=151.54 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCh----hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHHH
Q psy2181 212 PHNPGSVTPISR----DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 273 (490)
Q Consensus 212 ~~~rr~rT~ft~----eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~~ 273 (490)
...||.||.||. |||++|+.|+|++..+|-|||..|+|+|+||||||||||+|+||..|...
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~~ 222 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAKS 222 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccc
Confidence 347889999997 56999999999999999999999999999999999999999999888654
No 10
>KOG0848|consensus
Probab=99.52 E-value=3e-15 Score=146.28 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=57.2
Q ss_pred CCCCCCCh----hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHHHhhhccc
Q psy2181 216 GSVTPISR----DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQ 279 (490)
Q Consensus 216 r~rT~ft~----eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~~~~~~~~ 279 (490)
+.|..+|+ |||++|+.++|+++.++.|||..|+|+|+||||||||||+|+||..|+++++|+++
T Consensus 201 KYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~~~q~q~ 268 (317)
T KOG0848|consen 201 KYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKRLQQQQQ 268 (317)
T ss_pred ceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHHHHHhhc
Confidence 45778886 67999999999999999999999999999999999999999999999986554444
No 11
>KOG0843|consensus
Probab=99.50 E-value=1.3e-14 Score=134.79 Aligned_cols=64 Identities=34% Similarity=0.446 Sum_probs=61.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHH
Q psy2181 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 169 (490)
Q Consensus 106 K~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~ 169 (490)
|.+|.||.|+.+||..||..|+.++|-.-.+|++||+.|+|++.||+|||||||.|.||.+.++
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 7788999999999999999999999999999999999999999999999999999999987775
No 12
>KOG0487|consensus
Probab=99.50 E-value=1.5e-14 Score=146.23 Aligned_cols=66 Identities=26% Similarity=0.364 Sum_probs=59.9
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 170 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~ 170 (490)
+.-|++|.-+|..||.+||++|-.|.|.....|.||++.|+|+|+||+|||||||||+||..++..
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~r 298 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRENR 298 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhhh
Confidence 444556677999999999999999999999999999999999999999999999999999886554
No 13
>KOG0487|consensus
Probab=99.49 E-value=1.4e-14 Score=146.26 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCh----hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHHHh
Q psy2181 212 PHNPGSVTPISR----DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQA 274 (490)
Q Consensus 212 ~~~rr~rT~ft~----eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~~~ 274 (490)
.+.|++|..+|. |||++|..|.|++.+.|.||++.|+|+|+||||||||||+|+||..+++..
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~r~ 299 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRENRL 299 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhhhc
Confidence 567888999997 679999999999999999999999999999999999999999998876653
No 14
>KOG0850|consensus
Probab=99.48 E-value=2.1e-14 Score=138.04 Aligned_cols=66 Identities=24% Similarity=0.438 Sum_probs=62.0
Q ss_pred hcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHH
Q psy2181 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 169 (490)
Q Consensus 104 ~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~ 169 (490)
.+|.|+.||.|+..||..|.+.|++++|+-..+|.+||..|||+..||||||||||.|.||..+..
T Consensus 119 ~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g 184 (245)
T KOG0850|consen 119 GKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQG 184 (245)
T ss_pred cccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcC
Confidence 366777899999999999999999999999999999999999999999999999999999998844
No 15
>KOG0485|consensus
Probab=99.45 E-value=6.2e-14 Score=133.53 Aligned_cols=66 Identities=24% Similarity=0.301 Sum_probs=61.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHHH
Q psy2181 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQA 171 (490)
Q Consensus 106 K~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~~ 171 (490)
++|+.||+|+..|+..||..|+...|.+..+|..||..|.|+|.||+|||||||.||||+-..+..
T Consensus 103 RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aad~e 168 (268)
T KOG0485|consen 103 RKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAADLE 168 (268)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhhhhh
Confidence 456789999999999999999999999999999999999999999999999999999998766554
No 16
>KOG2251|consensus
Probab=99.44 E-value=6.9e-13 Score=127.18 Aligned_cols=62 Identities=37% Similarity=0.463 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 209 LALPHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 209 ~~~~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
....+.||.||.|+.+ ||..|.++.|||++.||+||.+|+|+|.+|||||+|||+|.|++++
T Consensus 32 ~~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~ 97 (228)
T KOG2251|consen 32 SGPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQ 97 (228)
T ss_pred ccchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhh
Confidence 3456788999999985 4888999999999999999999999999998866555555555444
No 17
>KOG0850|consensus
Probab=99.43 E-value=1.1e-13 Score=133.26 Aligned_cols=61 Identities=21% Similarity=0.227 Sum_probs=56.1
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 272 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~ 272 (490)
++-|+.||.|+.- |.+.|+++.|+-..+|.+||..|||+..||||||||||.|+||.+|..
T Consensus 120 KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g 184 (245)
T KOG0850|consen 120 KKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQG 184 (245)
T ss_pred ccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcC
Confidence 5677899999985 478899999999999999999999999999999999999999999943
No 18
>KOG0842|consensus
Probab=99.43 E-value=8.3e-14 Score=140.71 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCh----hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHHH
Q psy2181 210 ALPHNPGSVTPISR----DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 273 (490)
Q Consensus 210 ~~~~~rr~rT~ft~----eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~~ 273 (490)
...++||.|..||. |||+.|...+|++..+||+||..|.||+.||||||||||-|.||+++.+.
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 35567888999998 67999999999999999999999999999999999999999999988764
No 19
>KOG0492|consensus
Probab=99.43 E-value=1.3e-13 Score=130.55 Aligned_cols=67 Identities=22% Similarity=0.398 Sum_probs=61.9
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQA 171 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~~ 171 (490)
+..|+.||-||.+||..||+.|+..+|.++.+|.+++..|.|++.||+|||||||+|.||.++.+..
T Consensus 142 k~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQeae~E 208 (246)
T KOG0492|consen 142 KPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEAELE 208 (246)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHHHHH
Confidence 4456679999999999999999999999999999999999999999999999999999998877654
No 20
>KOG0494|consensus
Probab=99.42 E-value=8.1e-14 Score=135.69 Aligned_cols=41 Identities=54% Similarity=0.759 Sum_probs=37.7
Q ss_pred CCCCCCCh----hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeee
Q psy2181 216 GSVTPISR----DDAKEFERTHYPDVFARERLADKIGLPEARIQV 256 (490)
Q Consensus 216 r~rT~ft~----eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqv 256 (490)
+.||.||. +||++|...||||+.+||-||.++.|+|++|+|
T Consensus 143 h~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqV 187 (332)
T KOG0494|consen 143 HFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQV 187 (332)
T ss_pred cccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhH
Confidence 34999997 569999999999999999999999999999976
No 21
>KOG0843|consensus
Probab=99.42 E-value=9.3e-14 Score=129.22 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=56.0
Q ss_pred CCCCCCCCCChhh----HHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHH
Q psy2181 213 HNPGSVTPISRDD----AKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 272 (490)
Q Consensus 213 ~~rr~rT~ft~eq----e~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~ 272 (490)
+.||.||.||.+| |.+|+.++|....+|++||..|+|+|.||||||||||.|.||.+.+.
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 6789999999975 89999999999999999999999999999999999999999887664
No 22
>KOG0849|consensus
Probab=99.41 E-value=9.3e-14 Score=144.53 Aligned_cols=72 Identities=42% Similarity=0.617 Sum_probs=64.4
Q ss_pred chHHHhhhhcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 96 DSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 96 ds~~~~~~~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
+...+...+++.+|.||+|+..|++.||+.|++++||++..|++||.+++|++.+|+|||+|||++++|...
T Consensus 165 ~~~p~~~~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 165 EEPPGYALQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred cccccccccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccc
Confidence 333444566788889999999999999999999999999999999999999999999999999999988653
No 23
>KOG0848|consensus
Probab=99.39 E-value=9.3e-14 Score=135.90 Aligned_cols=67 Identities=27% Similarity=0.419 Sum_probs=61.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQA 171 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~~ 171 (490)
|.+-+-|.+||..|+-+||++|...+|..+..+.|||..|+|+|+||||||||||+|+||..|++..
T Consensus 197 RTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~~ 263 (317)
T KOG0848|consen 197 RTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKRL 263 (317)
T ss_pred ecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHHH
Confidence 3444567899999999999999999999999999999999999999999999999999999888853
No 24
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.39 E-value=1.6e-13 Score=105.63 Aligned_cols=57 Identities=37% Similarity=0.541 Sum_probs=54.3
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHH
Q psy2181 108 QRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164 (490)
Q Consensus 108 rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr 164 (490)
+|.|+.||.+|+.+|+..|+.++||+..++++||..+||+..+|++||+|+|.++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 467889999999999999999999999999999999999999999999999999875
No 25
>KOG0488|consensus
Probab=99.38 E-value=2.4e-13 Score=138.93 Aligned_cols=61 Identities=28% Similarity=0.308 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCh----hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHH
Q psy2181 212 PHNPGSVTPISR----DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 272 (490)
Q Consensus 212 ~~~rr~rT~ft~----eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~ 272 (490)
++.|+.||.||+ +||+.|++-+|+...+|.+||..|||+.+|||+||||||+||||+.-..
T Consensus 170 kK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~g 234 (309)
T KOG0488|consen 170 KKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAEG 234 (309)
T ss_pred cccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHhh
Confidence 778889999998 4699999999999999999999999999999999999999999977653
No 26
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.35 E-value=9.3e-13 Score=102.55 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=50.1
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCC----CCHHHHHHHHHHcCCCCCceeEechhhh
Q psy2181 108 QRNRTSFTNEQIDSLEKEFERTHY----PDVFARERLADKIGLPEARIQVSSINRV 159 (490)
Q Consensus 108 rR~RT~FT~~Ql~~LE~~Fer~~y----P~~~~ReeLA~~lgLs~~qVqvWFqNRR 159 (490)
+|.||.||.+|++.||..|++++| |+...+++||..|||++.+|+|||+|.+
T Consensus 2 kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 2 KRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 678999999999999999999999 9999999999999999999999999964
No 27
>KOG0493|consensus
Probab=99.34 E-value=1.5e-12 Score=127.08 Aligned_cols=60 Identities=32% Similarity=0.484 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 108 QRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 108 rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
||.||.||.+||..|+.+|+.+.|.....|.+||.+|+|+|.||+|||||+|+|.|+...
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsTg 306 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKSTG 306 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhccC
Confidence 578999999999999999999999999999999999999999999999999999988643
No 28
>KOG0486|consensus
Probab=99.33 E-value=7.9e-13 Score=132.10 Aligned_cols=68 Identities=40% Similarity=0.547 Sum_probs=64.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHHHh
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQAS 172 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~~~ 172 (490)
.|+||.||-||.+||.+||..|+++.|||...||+||--++|+|.+|+|||.|||+||++++......
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN~~ae 177 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAE 177 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhhHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999998887643
No 29
>KOG0844|consensus
Probab=99.31 E-value=1.6e-12 Score=129.18 Aligned_cols=60 Identities=42% Similarity=0.558 Sum_probs=57.0
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 107 LQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 107 ~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
-||-||.||.+||..||++|-+..|-++..|+|||..|+|.|..|||||||||||.||+.
T Consensus 181 mRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQR 240 (408)
T KOG0844|consen 181 MRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 240 (408)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhh
Confidence 367899999999999999999999999999999999999999999999999999999865
No 30
>KOG0492|consensus
Probab=99.31 E-value=1.8e-12 Score=122.95 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=56.3
Q ss_pred CCCCCCCCCCChhh----HHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHHH
Q psy2181 212 PHNPGSVTPISRDD----AKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 273 (490)
Q Consensus 212 ~~~rr~rT~ft~eq----e~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~~ 273 (490)
+..|+.||.||..| |+.|...+|..+.+|.+++..|.|+|.||||||||||+|.||.+..+.
T Consensus 142 k~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQeae~ 207 (246)
T KOG0492|consen 142 KPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEAEL 207 (246)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHHHH
Confidence 34678899999864 999999999999999999999999999999999999999999877654
No 31
>KOG0490|consensus
Probab=99.30 E-value=1.4e-12 Score=126.57 Aligned_cols=59 Identities=24% Similarity=0.214 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCh----hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 212 PHNPGSVTPISR----DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 212 ~~~rr~rT~ft~----eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
...|+.||.|+. ++|++|+++||||+..|+.||..++++|.+|+|||||||+|++++.+
T Consensus 58 ~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 58 FSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred ccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 356788999995 56999999999999999999999999999999999999999998775
No 32
>KOG0491|consensus
Probab=99.25 E-value=8.7e-13 Score=121.03 Aligned_cols=65 Identities=31% Similarity=0.522 Sum_probs=60.6
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHH
Q psy2181 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 170 (490)
Q Consensus 106 K~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~ 170 (490)
++++.||+|+..|+..||+.|+++.|.+..+|.|||..|+|++.||+.||||||||.||+.++..
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 44567999999999999999999999999999999999999999999999999999999887754
No 33
>KOG0485|consensus
Probab=99.25 E-value=2.6e-12 Score=122.56 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHH
Q psy2181 210 ALPHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 271 (490)
Q Consensus 210 ~~~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~ 271 (490)
+.-++|+.||.|+.. ||..|+..+|+...+|..||.+|.|+|.||||||||||.|+|++-.-
T Consensus 100 g~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aa 165 (268)
T KOG0485|consen 100 GDDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAA 165 (268)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence 445788999999985 59999999999999999999999999999999999999999997654
No 34
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.22 E-value=4.8e-12 Score=96.63 Aligned_cols=54 Identities=48% Similarity=0.688 Sum_probs=51.1
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhH
Q psy2181 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRN 162 (490)
Q Consensus 109 R~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~ 162 (490)
+.|+.|+.+|+.+|+..|+.++||+..++++||..+||+..+|++||+|||.+.
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~ 55 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKW 55 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhcc
Confidence 457789999999999999999999999999999999999999999999999875
No 35
>KOG0486|consensus
Probab=99.19 E-value=5.8e-12 Score=125.94 Aligned_cols=47 Identities=30% Similarity=0.472 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCCh----hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeee
Q psy2181 210 ALPHNPGSVTPISR----DDAKEFERTHYPDVFARERLADKIGLPEARIQV 256 (490)
Q Consensus 210 ~~~~~rr~rT~ft~----eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqv 256 (490)
.+.++||.||.||. |||..|.+|+|||...|||||..++|+|.+|+|
T Consensus 108 ki~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrv 158 (351)
T KOG0486|consen 108 KISKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRV 158 (351)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhh
Confidence 34588999999997 458889999999999999999999999999988
No 36
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.18 E-value=1.3e-11 Score=94.76 Aligned_cols=56 Identities=43% Similarity=0.637 Sum_probs=52.6
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHH
Q psy2181 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164 (490)
Q Consensus 109 R~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr 164 (490)
+.|+.|+..|+.+|+..|..++||+..+++.||..+||++.+|++||+|||.+.++
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 35668999999999999999999999999999999999999999999999998765
No 37
>KOG0493|consensus
Probab=99.16 E-value=1e-11 Score=121.20 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=53.2
Q ss_pred CCCCCCCCCChhh----HHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 213 HNPGSVTPISRDD----AKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 213 ~~rr~rT~ft~eq----e~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
..||.||.||.|| ..+|..|+|++...|.+||.+|+|.|.||||||||+|+|.||...
T Consensus 245 eeKRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsTg 306 (342)
T KOG0493|consen 245 EEKRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKSTG 306 (342)
T ss_pred hhcCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhccC
Confidence 3568899999986 678999999999999999999999999999999999999998654
No 38
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.16 E-value=1.8e-11 Score=94.21 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=49.3
Q ss_pred CCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 215 PGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 215 rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
|+.|+.||.+ |+..|..++||+..++++||..+||+..+|++||+|+|.+.||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 5678999986 4889999999999999999999999999999999999999886
No 39
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.13 E-value=3.5e-11 Score=111.63 Aligned_cols=68 Identities=24% Similarity=0.349 Sum_probs=59.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHHHh
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQAS 172 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~~~ 172 (490)
+..++.|++.|.+|+.+|++.|+.++||+...|.+|+..|+|+++-|+|||||||++.|+........
T Consensus 49 ~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~~~ 116 (156)
T COG5576 49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVEQ 116 (156)
T ss_pred CcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccchhc
Confidence 33455566789999999999999999999999999999999999999999999999999877665443
No 40
>KOG4577|consensus
Probab=99.11 E-value=3.6e-11 Score=118.86 Aligned_cols=66 Identities=26% Similarity=0.377 Sum_probs=61.9
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 170 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~ 170 (490)
...+|.||++|..||+.|+..|...+.|.+..||+|+.++||..++|||||||||+|+||.+|...
T Consensus 165 ~~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAG 230 (383)
T KOG4577|consen 165 ASNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAG 230 (383)
T ss_pred cccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcc
Confidence 345789999999999999999999999999999999999999999999999999999999988764
No 41
>KOG4577|consensus
Probab=99.11 E-value=4.8e-10 Score=111.00 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=53.1
Q ss_pred CCCCCCCCCChhh----HHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 213 HNPGSVTPISRDD----AKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 213 ~~rr~rT~ft~eq----e~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
..||+||.+|..| ..+|...+.|...+||+|+.++||..+.|||||||||+|+|+-+|
T Consensus 166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKK 227 (383)
T KOG4577|consen 166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK 227 (383)
T ss_pred ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhh
Confidence 3678999999864 677888999999999999999999999999999999999999888
No 42
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.10 E-value=8e-11 Score=91.75 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=45.0
Q ss_pred CCCCCCCChhh----HHHHHhhCC----CCHHHHHHHHHHcCCCcceeeeeehhhH
Q psy2181 215 PGSVTPISRDD----AKEFERTHY----PDVFARERLADKIGLPEARIQVSSINRV 262 (490)
Q Consensus 215 rr~rT~ft~eq----e~~F~~n~y----p~~~~re~LA~~l~L~e~qVqvWFqNRR 262 (490)
||.||.||.+| +..|++++| |+...|++||..|||++.+|||||||-+
T Consensus 2 kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 2 KRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 78899999975 888999999 9999999999999999999999999963
No 43
>KOG0844|consensus
Probab=99.10 E-value=2.3e-11 Score=121.05 Aligned_cols=58 Identities=29% Similarity=0.358 Sum_probs=53.7
Q ss_pred CCCCCCCCCChhh----HHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 213 HNPGSVTPISRDD----AKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 213 ~~rr~rT~ft~eq----e~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
.-||.||.||.|| |++|.+..|-...+|=|||..|||+|..|||||||||+|-|+++-
T Consensus 180 qmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 180 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 241 (408)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhh
Confidence 3578899999986 999999999999999999999999999999999999999988654
No 44
>KOG0483|consensus
Probab=99.05 E-value=7e-11 Score=113.39 Aligned_cols=59 Identities=31% Similarity=0.350 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHHH
Q psy2181 113 SFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQA 171 (490)
Q Consensus 113 ~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~~ 171 (490)
+|+.+|+..||..|+.+.+.....+..||..|||.++||.|||||||+|||..+.....
T Consensus 56 Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~ 114 (198)
T KOG0483|consen 56 RLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDY 114 (198)
T ss_pred cccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhH
Confidence 49999999999999999999999999999999999999999999999999987766543
No 45
>KOG3802|consensus
Probab=98.99 E-value=2.9e-10 Score=117.60 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=59.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
.|+||+||.|....+..||+.|..|+.|+..+...||++|+|...+|+|||.|||.|+||...
T Consensus 292 ~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 292 SRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRITP 354 (398)
T ss_pred ccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCCC
Confidence 466778999999999999999999999999999999999999999999999999999998765
No 46
>KOG0491|consensus
Probab=98.99 E-value=9.1e-11 Score=107.88 Aligned_cols=60 Identities=27% Similarity=0.352 Sum_probs=54.3
Q ss_pred CCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 273 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~~ 273 (490)
.++.||.|+.- +|+.|++.+|....+|.|||..|+|++.|||.||||||+|-||.+++.+
T Consensus 100 r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 100 RRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred hhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 45678999975 4999999999999999999999999999999999999999999887653
No 47
>KOG3802|consensus
Probab=98.98 E-value=5.1e-09 Score=108.48 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=53.1
Q ss_pred CCCCCCCCCCh----hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 213 HNPGSVTPISR----DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 213 ~~rr~rT~ft~----eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
++|++||.|.. -||+.|.+|+.|+..+.-.||.+|+|...+|+|||.|||.|+||..
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRIT 353 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCC
Confidence 78899999996 4799999999999999999999999999999999999999998743
No 48
>KOG0847|consensus
Probab=98.96 E-value=1.8e-10 Score=110.27 Aligned_cols=68 Identities=28% Similarity=0.410 Sum_probs=60.9
Q ss_pred hhcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHH
Q psy2181 103 LKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 170 (490)
Q Consensus 103 ~~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~ 170 (490)
...+++..|.+|+.+||..||+.|+...|+--.+|.+||..+|+++.+|+|||||||.||++...-+.
T Consensus 163 kdG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhAaEm 230 (288)
T KOG0847|consen 163 LNGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHAAEM 230 (288)
T ss_pred cCccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhccch
Confidence 34556667888999999999999999999999999999999999999999999999999998765444
No 49
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=98.91 E-value=6.4e-10 Score=84.82 Aligned_cols=50 Identities=34% Similarity=0.458 Sum_probs=45.3
Q ss_pred CCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHH
Q psy2181 216 GSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRN 265 (490)
Q Consensus 216 r~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~ 265 (490)
+.|+.|+.+ |+..|+.++||+..++++||..+||+..+|++||+|||.+.
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~ 55 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKW 55 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhcc
Confidence 456778875 58899999999999999999999999999999999999875
No 50
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=98.89 E-value=1.1e-09 Score=84.04 Aligned_cols=52 Identities=31% Similarity=0.420 Sum_probs=46.9
Q ss_pred CCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 216 GSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 216 r~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
+.++.|+.+ |+..|+.++||+..++++||..+||++.+|++||+|||.+.++
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 456677775 5899999999999999999999999999999999999999875
No 51
>KOG0483|consensus
Probab=98.81 E-value=2.8e-09 Score=102.43 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=49.2
Q ss_pred CCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHHH
Q psy2181 219 TPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 273 (490)
Q Consensus 219 T~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~~ 273 (490)
..|+.+ ||+.|+.+.|.....+..||..|||.++||.|||||||+|+|.++.+..
T Consensus 55 ~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d 113 (198)
T KOG0483|consen 55 RRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKD 113 (198)
T ss_pred ccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhh
Confidence 346665 4999999999999999999999999999999999999999998877654
No 52
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=98.80 E-value=3.5e-09 Score=98.37 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=51.9
Q ss_pred CCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 273 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~~ 273 (490)
.++.|+.-|.+ |++.|+.++||+...|.+|+..|+|+++-|||||||||++.|+....+.
T Consensus 51 ~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 51 PKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred CcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 34555666665 4899999999999999999999999999999999999999999877643
No 53
>KOG0849|consensus
Probab=98.75 E-value=4.6e-09 Score=109.58 Aligned_cols=139 Identities=32% Similarity=0.386 Sum_probs=85.6
Q ss_pred hcCCCCHHHHH---HH-HHHcCCCCCceeEechhhhhhHHHHHHHHHHhhccCcchhhhhhhhhccCCCCC---CCCCCC
Q psy2181 128 RTHYPDVFARE---RL-ADKIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETVYDKLRMFNGQPGW---AWYPGS 200 (490)
Q Consensus 128 r~~yP~~~~Re---eL-A~~lgLs~~qVqvWFqNRR~k~kr~~k~~~~~~~~~~~~~~~~k~~~~~g~pgw---pwyp~s 200 (490)
+.-+|+++.++ .| -+-++-......+--.||-.+.+...+.+.. ........+..+.+++.+- ..+...
T Consensus 87 k~~~P~~~~~~ir~~l~~~~~~~~~t~Ps~ssi~r~~r~~~~~~d~~~----~~~~~~~~~~~~~~~~~gs~~~~s~~~~ 162 (354)
T KOG0849|consen 87 KRENPAMFAWEIRDQLLHEGLCTQATLPSVSSINRVLRNGALGKDQGL----PSQQVTKEKSPSISGALGSQAGASLLSA 162 (354)
T ss_pred HhcCCcccchhhhhcccCcccccCCCCCChhhhhHHhhcccccccccc----ccccccccccCCcccccCCccccccccC
Confidence 34466666664 33 3334444434446556665554433332210 0000012222333333322 122333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChhh----HHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 201 TPTPSPAHLALPHNPGSVTPISRDD----AKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 201 ~~~~~p~~~~~~~~rr~rT~ft~eq----e~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
.....+....-.+.+|.||.|+.+| ++.|++++||++..|++||.+++|+|.+|+|||+|||.|++|...
T Consensus 163 ~~~~~p~~~~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 163 DDEEPPGYALQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred CccccccccccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccc
Confidence 3334444444556778889999865 889999999999999999999999999999999999999998764
No 54
>KOG0847|consensus
Probab=98.65 E-value=1.4e-08 Score=97.47 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=47.9
Q ss_pred CCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 216 GSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 216 r~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
..|-.|+-. +|+.|+..+|+--.+|.+||..+|+++.+|+|||||||.|++|+-
T Consensus 169 ~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkh 226 (288)
T KOG0847|consen 169 QSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKH 226 (288)
T ss_pred ccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhh
Confidence 455667754 489999999999999999999999999999999999999999854
No 55
>KOG1168|consensus
Probab=98.42 E-value=1.5e-07 Score=93.67 Aligned_cols=63 Identities=22% Similarity=0.240 Sum_probs=57.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHH
Q psy2181 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 168 (490)
Q Consensus 106 K~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~ 168 (490)
.+||+||.+..-....||..|..++.|+-.....||++|.|..++|+|||.|.|.|.||....
T Consensus 308 ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~~S 370 (385)
T KOG1168|consen 308 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKRS 370 (385)
T ss_pred ccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhhhh
Confidence 356789999999999999999999999999889999999999999999999999999885433
No 56
>KOG3862|consensus
Probab=98.22 E-value=5.9e-07 Score=88.83 Aligned_cols=126 Identities=27% Similarity=0.349 Sum_probs=65.6
Q ss_pred CccchhHHHHhhhhhhhhhhhhccCCchhhhhhhcccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCC
Q psy2181 2 KVSSINRVLRNLAAQKEQQASAHNQTSETVYDKLRMFNGQPGWAWYPGSTPPPSPAHLALPHNPGSVTPISRDDAKEHES 81 (490)
Q Consensus 2 SVSSINRIlR~k~~q~~~~~~~~~~~~~~~ydklrm~ngq~g~~w~P~~~~~~~~~~~~~p~s~~s~s~~s~~~~~~~es 81 (490)
||||||||||||+++++.... +++..|..- .++...+....+++......+..++++..+......+...
T Consensus 124 sVssinri~r~~~~~~~~~~~------~s~vsk~l~----~~h~a~~s~~~~P~~~~~~~s~~~~Si~~~~~~a~pss~~ 193 (327)
T KOG3862|consen 124 SVSSINRIIRTKVQQKQLGIT------HSCVTKVLA----RGHTAVPSSASPPPSSVQSDSVGSYSINGLLGIAQPSSAK 193 (327)
T ss_pred hHHHHHHHHHHhhhhcccCCc------cchhhcccc----CcccccccCCCCCCCCcccCCCCceeeccccccccCcccc
Confidence 899999999999999876421 111111111 0233333333333333333333333333332222211111
Q ss_pred CCCC-CCCCCCCCccchHHHhhhhcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHH
Q psy2181 82 TSDI-NSEPNSSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARE 138 (490)
Q Consensus 82 ~s~~-~s~~ss~~~~ds~~~~~~~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~Re 138 (490)
.... ....+...+.+...+.+.++|..|.. .|++.+++.|+..|++.+|+.+++-.
T Consensus 194 ~~~~~~~~~~s~~~~~~~~~~~~prk~l~~d-~ft~~~~~~ld~~~~r~~y~~~~~~~ 250 (327)
T KOG3862|consen 194 RKMDDSDQEGSVPSIDSQSGSSGPRKHLRAD-AFTQQHLEPLDRSFERPHYPLVYASP 250 (327)
T ss_pred ccCCcccccCcccccCCCccccCcchhcccc-cccccccccccceeeccccccccccc
Confidence 1100 11112222334444445566665554 59999999999999999999887543
No 57
>KOG0775|consensus
Probab=98.14 E-value=1.4e-06 Score=86.35 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 114 FTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 114 FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
|...-...|..+|..++||+..++.+||+.+||+..||..||+|||.|+|....
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa~~a 236 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRAAAA 236 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhhccc
Confidence 444455689999999999999999999999999999999999999999985443
No 58
>KOG1168|consensus
Probab=98.08 E-value=3e-06 Score=84.58 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=53.3
Q ss_pred CCCCCCCCCCh----hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHH
Q psy2181 213 HNPGSVTPISR----DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 271 (490)
Q Consensus 213 ~~rr~rT~ft~----eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~ 271 (490)
.+||+||.+-. +||.+|...+.|..+....+|++|+|....|+|||.|+|.|.|+.+..
T Consensus 308 ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~~S 370 (385)
T KOG1168|consen 308 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKRS 370 (385)
T ss_pred ccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhhhh
Confidence 56788888874 689999999999999999999999999999999999999999986653
No 59
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.89 E-value=3.5e-06 Score=61.01 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=28.6
Q ss_pred hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHH
Q psy2181 232 THYPDVFARERLADKIGLPEARIQVSSINRVLR 264 (490)
Q Consensus 232 n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k 264 (490)
++||+.+++++||..+||+..||..||.|.|.|
T Consensus 8 nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 8 NPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp SGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 689999999999999999999999999999965
No 60
>KOG0774|consensus
Probab=97.76 E-value=1.6e-05 Score=78.47 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHhh---hcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHH
Q psy2181 108 QRNRTSFTNEQIDSLEKEFE---RTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 170 (490)
Q Consensus 108 rR~RT~FT~~Ql~~LE~~Fe---r~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~ 170 (490)
+|+|..|+.+-.++|..+|- .++||+..++++||.+++++..||..||.|+|.++|+...+.+
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~~k~~ 254 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNMGKNQ 254 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhhhhhh
Confidence 45566799999999999995 4799999999999999999999999999999999998765543
No 61
>KOG0775|consensus
Probab=97.66 E-value=0.00012 Score=72.98 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=33.8
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHH
Q psy2181 225 DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR 264 (490)
Q Consensus 225 qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k 264 (490)
|...|..++||+..++.+||+.+||+..||-.||+|||.|
T Consensus 191 LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQR 230 (304)
T KOG0775|consen 191 LREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQR 230 (304)
T ss_pred HHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhh
Confidence 3556888999999999999999999999998866666544
No 62
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.61 E-value=1.1e-05 Score=58.44 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=28.8
Q ss_pred hcCCCCHHHHHHHHHHcCCCCCceeEechhhhhh
Q psy2181 128 RTHYPDVFARERLADKIGLPEARIQVSSINRVLR 161 (490)
Q Consensus 128 r~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k 161 (490)
.++||+..++++|+..+||+..||..||.|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4699999999999999999999999999999865
No 63
>KOG0774|consensus
Probab=97.53 E-value=0.0001 Score=72.98 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=51.2
Q ss_pred CCCCCCCCChh----hHHHHHh---hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 273 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F~~---n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~~ 273 (490)
.+|+|..|+.. |...|.. |+||+.+++++||++.|++..||..||.|+|.++||...+.+
T Consensus 188 arRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~~k~~ 254 (334)
T KOG0774|consen 188 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNMGKNQ 254 (334)
T ss_pred HHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhhhhhh
Confidence 45677777763 4666765 789999999999999999999999999999999999887665
No 64
>KOG2252|consensus
Probab=97.28 E-value=0.00014 Score=78.54 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=53.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhH
Q psy2181 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRN 162 (490)
Q Consensus 106 K~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~ 162 (490)
+.+|.|.+||..|++.|..+|+.+++|+....+.|+..|+|....|..||-|-|-|.
T Consensus 419 ~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 419 QTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred cCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 346779999999999999999999999999999999999999999999999988664
No 65
>KOG1146|consensus
Probab=96.76 E-value=0.0014 Score=76.91 Aligned_cols=61 Identities=13% Similarity=0.020 Sum_probs=53.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 106 K~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
..++.+...-.+++..|-.+|-.+.-|+...+..|......+.+++.+||.|-|.|.++..
T Consensus 704 ~~~~~~~~~~~~aa~~l~~a~~~~~sps~k~~~civcd~~st~~l~~l~~h~~~~rs~ke~ 764 (1406)
T KOG1146|consen 704 RDKLLRLTILPEAAMILGRAYMQDNSPSLKVFDCIVCDVFSTDRLDQLWFHNTRERSRKEQ 764 (1406)
T ss_pred ccccCcccccHHHHhhhhhcccCCCCHHHHHHHHhhhhhhhhhhHHHHhhcchhhhhhhhc
Confidence 3456677788899999999999999999999999999999999999999999998877654
No 66
>KOG2252|consensus
Probab=96.58 E-value=0.0015 Score=70.78 Aligned_cols=58 Identities=10% Similarity=0.081 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCCCCChhh----HHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHH
Q psy2181 208 HLALPHNPGSVTPISRDD----AKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRN 265 (490)
Q Consensus 208 ~~~~~~~rr~rT~ft~eq----e~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~ 265 (490)
.......|+.|+.||..| ...|..+++|+.+..+.|+.+|||....|.+||-|-|.|.
T Consensus 414 ~d~~~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 414 DDKMLQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred ccccccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 344556778899999976 5679999999999999999999999999999999998774
No 67
>KOG1146|consensus
Probab=96.35 E-value=0.002 Score=75.78 Aligned_cols=63 Identities=25% Similarity=0.272 Sum_probs=57.4
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHH
Q psy2181 107 LQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 169 (490)
Q Consensus 107 ~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~ 169 (490)
+++.|+.|+.+||..|...|+...||...+.|.|...++|..+.|+|||||-|.+.++.....
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~n~ 965 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKLNG 965 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhhcc
Confidence 466789999999999999999999999999999999999999999999999999988876533
No 68
>KOG3623|consensus
Probab=95.67 E-value=0.0067 Score=67.62 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 114 FTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 114 FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
|+.- +..|+..|..|..|...+-..+|..+||+.+.|++||+++++.....
T Consensus 564 ~~~p-~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv 614 (1007)
T KOG3623|consen 564 FNHP-TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSV 614 (1007)
T ss_pred cCCc-HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhh
Confidence 4443 78899999999999999999999999999999999999988776543
No 69
>KOG0773|consensus
Probab=95.13 E-value=0.014 Score=60.61 Aligned_cols=41 Identities=24% Similarity=0.257 Sum_probs=37.0
Q ss_pred hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHH
Q psy2181 232 THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 272 (490)
Q Consensus 232 n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~ 272 (490)
.+||+...+..||.++||+..+|.+||+|.|.|..+-....
T Consensus 264 ~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~~~ 304 (342)
T KOG0773|consen 264 HPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMIEE 304 (342)
T ss_pred CCCCcchhccccchhcCCCcccCCchhhhcccccCCchHHH
Confidence 57999999999999999999999999999999988766644
No 70
>KOG3623|consensus
Probab=94.15 E-value=0.033 Score=62.32 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=39.5
Q ss_pred hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 224 DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 224 eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
-+..+|..|.+|..++...+|..+||+.+.|++||++++.+...
T Consensus 570 llkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~s 613 (1007)
T KOG3623|consen 570 LLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMS 613 (1007)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhh
Confidence 35678999999999999999999999999999999999877553
No 71
>KOG0773|consensus
Probab=93.86 E-value=0.041 Score=57.22 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=49.7
Q ss_pred cCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 107 LQRNRTSFTNEQIDSLEKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 107 ~rR~RT~FT~~Ql~~LE~~Fer---~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
..|.+..|......+|+.++.. .+||+..++..|+..+||+..||..||+|.|.|..+-..
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~ 302 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMI 302 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchH
Confidence 3444457999999999987433 479999999999999999999999999999988655443
No 72
>KOG3755|consensus
Probab=91.81 E-value=0.18 Score=55.53 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=40.9
Q ss_pred CCCCCCCCChhh---HHHHHh--hCCCCHHH---HHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 214 NPGSVTPISRDD---AKEFER--THYPDVFA---RERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 214 ~rr~rT~ft~eq---e~~F~~--n~yp~~~~---re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
.++.||.+.-|- ...|.. .=||+... ..-|...++++...+--.|||.|.-.++.-
T Consensus 647 ~p~~~~~isge~~~~~qs~i~~~gl~pd~~a~~~~~~LSa~~~~pk~~~~k~f~~~~~ev~~~w 710 (769)
T KOG3755|consen 647 KPRKRTKISGEALGILQSFITDVGLYPDKEAPYFIKTLSAQLDLPKKTIIKFFQNQRYEVKHHW 710 (769)
T ss_pred CccccceecccchHHHHHHHHHhccCchhhcccccchhhhhhcccHHHHHHhhhcceeecchhh
Confidence 445666666553 233332 45899888 889999999999998888999998776443
No 73
>KOG3517|consensus
Probab=91.33 E-value=0.16 Score=50.49 Aligned_cols=16 Identities=50% Similarity=0.600 Sum_probs=14.1
Q ss_pred CccchhHHHHhhhhhh
Q psy2181 2 KVSSINRVLRNLAAQK 17 (490)
Q Consensus 2 SVSSINRIlR~k~~q~ 17 (490)
|||||.||||||+..-
T Consensus 119 SVSSISRILRNKiGsL 134 (334)
T KOG3517|consen 119 SVSSISRILRNKIGSL 134 (334)
T ss_pred chHHHHHHHHhhhccc
Confidence 8999999999998543
No 74
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=90.84 E-value=0.06 Score=41.88 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=30.9
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhh
Q psy2181 119 IDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRV 159 (490)
Q Consensus 119 l~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR 159 (490)
+..|++.|...+++....-+.|..+.+|+..+|+.||-.|+
T Consensus 10 ~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 10 IQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp -HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 45699999999999989999999999999999999997664
No 75
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=85.29 E-value=0.26 Score=38.38 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=29.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhH
Q psy2181 225 DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRV 262 (490)
Q Consensus 225 qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR 262 (490)
|+..|...+++.....+.|-.+.+|+..+|+.||--|+
T Consensus 13 L~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 13 LEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp HHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred HHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 68899999999999999999999999999999997764
No 76
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=76.26 E-value=2.3 Score=32.47 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=32.8
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhh
Q psy2181 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158 (490)
Q Consensus 109 R~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNR 158 (490)
|.|..+|-++...+-..++... ....||..+|++..+|..|..|+
T Consensus 2 rkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 2 RKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 4567899988887777787765 56789999999999999998875
No 77
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=53.54 E-value=8.8 Score=29.23 Aligned_cols=43 Identities=12% Similarity=0.270 Sum_probs=28.1
Q ss_pred CCCCCCCChhh----HHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhH
Q psy2181 215 PGSVTPISRDD----AKEFERTHYPDVFARERLADKIGLPEARIQVSSINRV 262 (490)
Q Consensus 215 rr~rT~ft~eq----e~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR 262 (490)
++.|..+|-++ -+.++... ...+||..+|++..+|..|..|+.
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k~ 47 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNKD 47 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCHH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhHH
Confidence 35677788754 34455554 678999999999999999888764
No 78
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=43.31 E-value=29 Score=26.68 Aligned_cols=38 Identities=24% Similarity=0.511 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHhhhcCC--CCHHHHHHHHHHcCCCCCce
Q psy2181 114 FTNEQIDSLEKEFERTHY--PDVFARERLADKIGLPEARI 151 (490)
Q Consensus 114 FT~~Ql~~LE~~Fer~~y--P~~~~ReeLA~~lgLs~~qV 151 (490)
+|..|.++|...|+..-| |-...-.+||+.+|++..-+
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st~ 40 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKSTV 40 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHHH
Confidence 578999999999988644 43444578999999987544
No 79
>KOG3755|consensus
Probab=39.79 E-value=9.7 Score=42.61 Aligned_cols=57 Identities=25% Similarity=0.264 Sum_probs=43.3
Q ss_pred cCCCCCCCCHHHHHHHHHHhh-hcCCCCHHH---HHHHHHHcCCCCCceeEechhhhhhHH
Q psy2181 107 LQRNRTSFTNEQIDSLEKEFE-RTHYPDVFA---RERLADKIGLPEARIQVSSINRVLRNL 163 (490)
Q Consensus 107 ~rR~RT~FT~~Ql~~LE~~Fe-r~~yP~~~~---ReeLA~~lgLs~~qVqvWFqNRR~k~k 163 (490)
+.|.|+.+..+-+..|..+-. ..=||+..+ ..-|+..+++..+.+--.|||.|.-.+
T Consensus 647 ~p~~~~~isge~~~~~qs~i~~~gl~pd~~a~~~~~~LSa~~~~pk~~~~k~f~~~~~ev~ 707 (769)
T KOG3755|consen 647 KPRKRTKISGEALGILQSFITDVGLYPDKEAPYFIKTLSAQLDLPKKTIIKFFQNQRYEVK 707 (769)
T ss_pred CccccceecccchHHHHHHHHHhccCchhhcccccchhhhhhcccHHHHHHhhhcceeecc
Confidence 456777888888888766532 345888877 677899999998888888999887655
No 80
>KOG1103|consensus
Probab=30.11 E-value=2.4e+02 Score=30.06 Aligned_cols=14 Identities=50% Similarity=1.037 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCC
Q psy2181 466 HPAHPGSSPYGTSN 479 (490)
Q Consensus 466 ~~~~~~~~~~~~~~ 479 (490)
-|-.|+++|+||.-
T Consensus 530 kpvspnsspfGTd~ 543 (561)
T KOG1103|consen 530 KPVSPNSSPFGTDK 543 (561)
T ss_pred CCCCCCCCCccccc
Confidence 47789999999863
No 81
>KOG1924|consensus
Probab=27.68 E-value=3.7e+02 Score=31.77 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=6.0
Q ss_pred hcchhhHHHHHHH
Q psy2181 342 FSNRRAKWRREEK 354 (490)
Q Consensus 342 f~nrrak~r~~e~ 354 (490)
||-..|.-+|.|+
T Consensus 490 ~qe~qael~k~e~ 502 (1102)
T KOG1924|consen 490 RQEAQAELQKHEE 502 (1102)
T ss_pred HHHHHHHHHHhhh
Confidence 3444444444443
No 82
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=22.31 E-value=46 Score=24.36 Aligned_cols=38 Identities=8% Similarity=0.267 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEec
Q psy2181 113 SFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSS 155 (490)
Q Consensus 113 ~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWF 155 (490)
.++..+.++|...|.. ...-.++|+.+|++...|+.+.
T Consensus 4 ~L~~~er~vi~~~y~~-----~~t~~eIa~~lg~s~~~V~~~~ 41 (50)
T PF04545_consen 4 QLPPREREVIRLRYFE-----GLTLEEIAERLGISRSTVRRIL 41 (50)
T ss_dssp TS-HHHHHHHHHHHTS-----T-SHHHHHHHHTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcC-----CCCHHHHHHHHCCcHHHHHHHH
Confidence 3678888888888722 2346789999999988776543
No 83
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=21.88 E-value=29 Score=27.50 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCCcceeeeeeh
Q psy2181 239 ARERLADKIGLPEARIQVSSI 259 (490)
Q Consensus 239 ~re~LA~~l~L~e~qVqvWFq 259 (490)
.-.+||.+||+++.+|+.|=.
T Consensus 24 ~lkdIA~~Lgvs~~tIr~WK~ 44 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIRKWKS 44 (60)
T ss_pred cHHHHHHHHCCCHHHHHHHhh
Confidence 456899999999999988753
No 84
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=20.03 E-value=25 Score=27.82 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=26.3
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEec
Q psy2181 110 NRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSS 155 (490)
Q Consensus 110 ~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWF 155 (490)
.|..|+.++...+-..+... -....+||..+||+...+..|-
T Consensus 3 ~r~~ys~e~K~~~v~~~~~~----g~sv~~va~~~gi~~~~l~~W~ 44 (76)
T PF01527_consen 3 KRRRYSPEFKLQAVREYLES----GESVSEVAREYGISPSTLYNWR 44 (76)
T ss_dssp SS----HHHHHHHHHHHHHH----HCHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHC----CCceEeeecccccccccccHHH
Confidence 45579999988776665221 2455789999999998888874
Done!