Query psy2181
Match_columns 490
No_of_seqs 484 out of 2269
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 18:21:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fjl_A Paired protein; DNA-bin 99.7 3.9E-17 1.3E-21 134.0 4.4 66 102-167 13-78 (81)
2 2kt0_A Nanog, homeobox protein 99.6 2.9E-17 9.9E-22 135.5 1.9 63 104-166 19-81 (84)
3 1nk2_P Homeobox protein VND; h 99.6 8.2E-17 2.8E-21 130.9 4.1 66 104-169 6-71 (77)
4 2dmt_A Homeobox protein BARH-l 99.6 2.9E-17 9.9E-22 134.6 1.3 62 104-165 14-75 (80)
5 2cue_A Paired box protein PAX6 99.6 1.4E-16 4.7E-21 130.5 4.6 66 105-170 5-70 (80)
6 2da3_A Alpha-fetoprotein enhan 99.6 3.4E-17 1.2E-21 133.7 1.0 61 105-165 15-75 (80)
7 1puf_A HOX-1.7, homeobox prote 99.6 1.6E-16 5.5E-21 129.2 4.7 65 105-169 11-75 (77)
8 2h1k_A IPF-1, pancreatic and d 99.6 1.1E-16 3.6E-21 125.3 3.3 60 107-166 3-62 (63)
9 2hdd_A Protein (engrailed home 99.6 9.9E-17 3.4E-21 124.6 2.7 58 107-164 3-60 (61)
10 1wh5_A ZF-HD homeobox family p 99.6 4.6E-17 1.6E-21 133.7 0.8 60 105-164 15-78 (80)
11 2dmu_A Homeobox protein goosec 99.6 1.7E-16 5.7E-21 126.6 3.8 62 105-166 5-66 (70)
12 2vi6_A Homeobox protein nanog; 99.6 5.8E-17 2E-21 126.3 1.0 60 106-165 2-61 (62)
13 1ig7_A Homeotic protein MSX-1; 99.6 1.9E-16 6.5E-21 121.6 3.8 57 108-164 1-57 (58)
14 2dmq_A LIM/homeobox protein LH 99.6 2.5E-16 8.6E-21 128.7 4.4 64 105-168 5-68 (80)
15 2cra_A Homeobox protein HOX-B1 99.6 1.1E-16 3.7E-21 127.8 2.1 61 105-165 5-65 (70)
16 3a01_A Homeodomain-containing 99.6 1.3E-16 4.5E-21 134.5 2.5 66 105-170 15-80 (93)
17 1zq3_P PRD-4, homeotic bicoid 99.6 2.7E-16 9.1E-21 124.9 4.0 63 107-169 2-64 (68)
18 2dms_A Homeobox protein OTX2; 99.6 2.6E-16 8.8E-21 128.8 3.8 63 105-167 5-67 (80)
19 1ahd_P Antennapedia protein mu 99.6 2.4E-16 8.2E-21 125.2 3.2 60 107-166 2-61 (68)
20 1wh7_A ZF-HD homeobox family p 99.6 5.5E-17 1.9E-21 133.3 -0.6 59 105-164 15-78 (80)
21 2da1_A Alpha-fetoprotein enhan 99.6 1.9E-16 6.6E-21 126.2 2.4 62 105-166 5-66 (70)
22 2da2_A Alpha-fetoprotein enhan 99.6 1.9E-16 6.5E-21 126.2 2.4 61 105-165 5-65 (70)
23 2e1o_A Homeobox protein PRH; D 99.6 4.1E-16 1.4E-20 124.4 4.1 61 106-166 6-66 (70)
24 2da4_A Hypothetical protein DK 99.6 1.4E-16 5E-21 130.3 1.4 61 105-165 6-70 (80)
25 1ftt_A TTF-1 HD, thyroid trans 99.6 2.5E-16 8.5E-21 125.1 2.6 61 107-167 2-62 (68)
26 2l7z_A Homeobox protein HOX-A1 99.6 3.3E-16 1.1E-20 126.1 3.4 62 105-166 5-66 (73)
27 2djn_A Homeobox protein DLX-5; 99.6 1.6E-16 5.6E-21 126.8 1.5 61 105-165 5-65 (70)
28 1jgg_A Segmentation protein EV 99.6 3.8E-16 1.3E-20 120.9 3.5 58 108-165 2-59 (60)
29 1yz8_P Pituitary homeobox 2; D 99.6 1.5E-16 5.1E-21 126.3 1.1 62 106-167 2-63 (68)
30 1b8i_A Ultrabithorax, protein 99.6 2.3E-16 7.8E-21 129.6 2.0 61 106-166 19-79 (81)
31 2r5y_A Homeotic protein sex co 99.6 1.8E-16 6.3E-21 132.0 1.4 61 105-165 26-86 (88)
32 1akh_A Protein (mating-type pr 99.6 2.5E-16 8.5E-21 122.2 1.9 59 105-163 3-61 (61)
33 1bw5_A ISL-1HD, insulin gene e 99.6 2.4E-16 8.2E-21 124.3 1.8 60 106-165 2-61 (66)
34 3a02_A Homeobox protein arista 99.6 3.5E-16 1.2E-20 121.1 2.0 58 110-167 2-59 (60)
35 2ecc_A Homeobox and leucine zi 99.6 6.9E-16 2.4E-20 125.4 3.6 56 110-165 6-61 (76)
36 3rkq_A Homeobox protein NKX-2. 99.6 6E-16 2E-20 118.4 2.5 57 107-163 2-58 (58)
37 3a03_A T-cell leukemia homeobo 99.6 8E-16 2.7E-20 117.6 3.0 54 112-165 2-55 (56)
38 2hi3_A Homeodomain-only protei 99.6 1.1E-15 3.6E-20 123.1 3.7 59 108-166 3-62 (73)
39 2m0c_A Homeobox protein arista 99.6 6.4E-16 2.2E-20 124.5 2.3 63 104-166 6-68 (75)
40 1b72_A Protein (homeobox prote 99.6 1E-15 3.4E-20 129.9 3.5 89 143-270 2-94 (97)
41 1uhs_A HOP, homeodomain only p 99.6 1.4E-15 4.7E-20 122.0 3.8 58 109-166 3-61 (72)
42 1b72_A Protein (homeobox prote 99.6 1.1E-15 3.6E-20 129.7 3.1 63 105-167 32-94 (97)
43 2k40_A Homeobox expressed in E 99.5 1.1E-15 3.7E-20 120.9 2.7 59 108-166 2-60 (67)
44 3nar_A ZHX1, zinc fingers and 99.5 1.1E-15 3.8E-20 129.4 2.5 62 105-166 23-84 (96)
45 2cuf_A FLJ21616 protein; homeo 99.5 2E-15 6.7E-20 127.6 3.6 64 105-168 5-83 (95)
46 2ly9_A Zinc fingers and homeob 99.5 1.9E-15 6.4E-20 121.7 1.9 60 107-166 6-65 (74)
47 1x2n_A Homeobox protein pknox1 99.5 4E-15 1.4E-19 119.5 3.5 61 105-165 5-68 (73)
48 2da5_A Zinc fingers and homeob 99.5 4E-15 1.4E-19 120.5 3.4 57 110-166 10-66 (75)
49 2dn0_A Zinc fingers and homeob 99.5 1.7E-15 5.8E-20 122.8 0.9 58 109-166 10-67 (76)
50 2cue_A Paired box protein PAX6 99.5 1.3E-14 4.4E-19 118.7 6.1 64 212-275 5-72 (80)
51 2da6_A Hepatocyte nuclear fact 99.5 7.5E-15 2.6E-19 125.5 4.6 66 105-170 4-90 (102)
52 1wi3_A DNA-binding protein SAT 99.5 4.7E-15 1.6E-19 117.1 2.8 58 105-162 5-63 (71)
53 1puf_B PRE-B-cell leukemia tra 99.5 7.5E-15 2.6E-19 117.9 3.4 61 108-168 2-65 (73)
54 1puf_A HOX-1.7, homeobox prote 99.5 2.7E-14 9.3E-19 116.0 6.7 62 211-272 10-75 (77)
55 1b72_B Protein (PBX1); homeodo 99.5 5.7E-15 2E-19 122.5 2.4 62 108-169 2-66 (87)
56 1nk2_P Homeobox protein VND; h 99.5 2.3E-14 7.9E-19 116.4 5.8 61 212-272 7-71 (77)
57 1lfb_A Liver transcription fac 99.5 2.5E-15 8.5E-20 128.2 -0.1 67 102-168 4-91 (99)
58 1du6_A PBX1, homeobox protein 99.5 3.2E-15 1.1E-19 117.0 0.4 58 107-164 3-63 (64)
59 1k61_A Mating-type protein alp 99.5 8.8E-15 3E-19 113.1 2.7 54 111-164 2-58 (60)
60 1e3o_C Octamer-binding transcr 99.5 6.5E-15 2.2E-19 135.8 2.1 61 105-165 99-159 (160)
61 3a01_A Homeodomain-containing 99.5 2.1E-14 7E-19 121.0 4.8 62 211-272 14-79 (93)
62 2xsd_C POU domain, class 3, tr 99.5 7.7E-15 2.6E-19 135.9 1.8 64 104-167 96-159 (164)
63 2dmt_A Homeobox protein BARH-l 99.5 2.9E-14 9.8E-19 116.7 5.0 59 211-269 14-76 (80)
64 1zq3_P PRD-4, homeotic bicoid 99.5 1.5E-14 5.1E-19 114.8 3.2 58 214-271 2-63 (68)
65 1ig7_A Homeotic protein MSX-1; 99.5 2.6E-14 8.9E-19 109.6 4.4 53 215-267 1-57 (58)
66 2h1k_A IPF-1, pancreatic and d 99.5 2.4E-14 8.1E-19 111.9 4.2 55 214-268 3-61 (63)
67 3nau_A Zinc fingers and homeob 99.5 1.5E-14 5.1E-19 114.1 3.0 53 114-166 11-63 (66)
68 2hdd_A Protein (engrailed home 99.5 1.7E-14 5.9E-19 111.9 3.2 54 214-267 3-60 (61)
69 2ecb_A Zinc fingers and homeob 99.5 1.4E-14 4.9E-19 121.2 2.9 54 113-166 17-70 (89)
70 1au7_A Protein PIT-1, GHF-1; c 99.5 9E-15 3.1E-19 133.0 1.8 62 104-165 84-145 (146)
71 2da3_A Alpha-fetoprotein enhan 99.5 3.9E-14 1.3E-18 115.4 5.4 59 211-269 14-76 (80)
72 1mnm_C Protein (MAT alpha-2 tr 99.5 1.5E-14 5.2E-19 120.1 3.0 59 105-163 25-86 (87)
73 2dmu_A Homeobox protein goosec 99.5 2.4E-14 8.3E-19 114.0 3.8 59 212-270 5-67 (70)
74 2dmn_A Homeobox protein TGIF2L 99.5 2.5E-14 8.5E-19 118.1 3.9 61 106-166 6-69 (83)
75 2dmq_A LIM/homeobox protein LH 99.5 4.5E-14 1.5E-18 115.3 5.3 60 212-271 5-68 (80)
76 2cqx_A LAG1 longevity assuranc 99.5 5.2E-15 1.8E-19 119.1 -0.2 55 110-164 11-66 (72)
77 1fjl_A Paired protein; DNA-bin 99.5 4.3E-14 1.5E-18 115.8 5.2 60 211-270 15-78 (81)
78 1jgg_A Segmentation protein EV 99.5 2.5E-14 8.4E-19 110.6 3.4 54 215-268 2-59 (60)
79 1wh5_A ZF-HD homeobox family p 99.5 1.9E-14 6.6E-19 118.0 3.0 58 210-267 13-78 (80)
80 3d1n_I POU domain, class 6, tr 99.4 1.9E-14 6.5E-19 131.4 3.1 61 104-164 90-150 (151)
81 1ftt_A TTF-1 HD, thyroid trans 99.4 1.1E-14 3.8E-19 115.6 1.3 58 214-271 2-63 (68)
82 2dms_A Homeobox protein OTX2; 99.4 2.3E-14 7.8E-19 117.2 3.2 59 212-270 5-67 (80)
83 2vi6_A Homeobox protein nanog; 99.4 1.1E-14 3.7E-19 113.4 1.1 55 214-268 3-61 (62)
84 2kt0_A Nanog, homeobox protein 99.4 2E-14 6.9E-19 118.4 2.8 60 211-270 19-82 (84)
85 1ahd_P Antennapedia protein mu 99.4 1.8E-14 6E-19 114.4 2.3 57 214-270 2-62 (68)
86 2cra_A Homeobox protein HOX-B1 99.4 3.1E-14 1E-18 113.5 3.3 58 212-269 5-66 (70)
87 3a02_A Homeobox protein arista 99.4 2.3E-14 7.8E-19 110.8 2.4 54 217-270 2-59 (60)
88 1b8i_A Ultrabithorax, protein 99.4 3E-14 1E-18 116.9 3.1 58 212-269 18-79 (81)
89 2e1o_A Homeobox protein PRH; D 99.4 7.3E-14 2.5E-18 111.3 5.0 58 212-269 5-66 (70)
90 2l7z_A Homeobox protein HOX-A1 99.4 4.9E-14 1.7E-18 113.4 4.0 59 211-269 4-66 (73)
91 1le8_B Mating-type protein alp 99.4 2.6E-14 8.9E-19 117.8 2.4 57 110-166 5-64 (83)
92 2dmp_A Zinc fingers and homeob 99.4 3.4E-14 1.2E-18 118.8 2.9 55 113-167 19-73 (89)
93 1wh7_A ZF-HD homeobox family p 99.4 2.5E-14 8.6E-19 117.4 2.0 56 211-267 14-78 (80)
94 2da2_A Alpha-fetoprotein enhan 99.4 5.3E-14 1.8E-18 112.0 3.7 58 212-269 5-66 (70)
95 2hi3_A Homeodomain-only protei 99.4 7.3E-14 2.5E-18 112.3 4.5 57 214-270 2-63 (73)
96 2da1_A Alpha-fetoprotein enhan 99.4 5.3E-14 1.8E-18 112.0 3.2 58 212-269 5-66 (70)
97 2ecc_A Homeobox and leucine zi 99.4 8.3E-14 2.8E-18 113.1 4.2 54 216-269 5-62 (76)
98 2djn_A Homeobox protein DLX-5; 99.4 4.4E-14 1.5E-18 112.6 2.5 57 212-268 5-65 (70)
99 1yz8_P Pituitary homeobox 2; D 99.4 2.4E-14 8.2E-19 113.5 0.9 57 214-270 3-63 (68)
100 1uhs_A HOP, homeodomain only p 99.4 7.3E-14 2.5E-18 111.9 3.8 56 215-270 2-62 (72)
101 3a03_A T-cell leukemia homeobo 99.4 7.2E-14 2.5E-18 106.7 3.5 50 219-268 2-55 (56)
102 2r5y_A Homeotic protein sex co 99.4 3.2E-14 1.1E-18 118.4 1.6 58 212-269 26-87 (88)
103 1bw5_A ISL-1HD, insulin gene e 99.4 4.9E-14 1.7E-18 111.0 2.5 56 213-268 2-61 (66)
104 2l9r_A Homeobox protein NKX-3. 99.4 2.8E-14 9.6E-19 114.0 1.0 54 113-166 10-63 (69)
105 2e19_A Transcription factor 8; 99.4 4E-14 1.4E-18 111.4 1.7 53 112-164 8-60 (64)
106 2ly9_A Zinc fingers and homeob 99.4 6.8E-14 2.3E-18 112.6 2.7 60 211-270 3-66 (74)
107 2da4_A Hypothetical protein DK 99.4 7.3E-14 2.5E-18 114.1 2.9 57 212-268 6-70 (80)
108 3l1p_A POU domain, class 5, tr 99.4 6.3E-14 2.1E-18 128.6 2.3 61 105-165 94-154 (155)
109 2m0c_A Homeobox protein arista 99.4 3.5E-14 1.2E-18 114.3 0.4 59 212-270 7-69 (75)
110 3rkq_A Homeobox protein NKX-2. 99.4 1E-13 3.6E-18 105.8 3.0 53 214-266 2-58 (58)
111 2k40_A Homeobox expressed in E 99.4 1.1E-13 3.8E-18 109.3 3.1 57 214-270 1-61 (67)
112 1wi3_A DNA-binding protein SAT 99.4 2.1E-13 7.1E-18 107.8 4.4 54 212-265 5-63 (71)
113 2d5v_A Hepatocyte nuclear fact 99.4 5.7E-14 2E-18 129.7 1.3 64 104-167 94-157 (164)
114 1akh_A Protein (mating-type pr 99.4 1.5E-13 5E-18 106.5 2.4 54 213-266 4-61 (61)
115 1x2m_A LAG1 longevity assuranc 99.4 7E-14 2.4E-18 110.0 0.6 49 116-164 9-58 (64)
116 2cuf_A FLJ21616 protein; homeo 99.3 4.4E-13 1.5E-17 113.1 4.8 60 212-271 5-83 (95)
117 2da5_A Zinc fingers and homeob 99.3 2.6E-13 8.8E-18 109.8 2.8 55 216-270 9-67 (75)
118 2cqx_A LAG1 longevity assuranc 99.3 4.9E-13 1.7E-17 107.5 4.3 45 223-267 21-66 (72)
119 1x2m_A LAG1 longevity assuranc 99.3 1.3E-13 4.4E-18 108.5 0.6 46 222-267 12-58 (64)
120 2dn0_A Zinc fingers and homeob 99.3 2.9E-13 9.9E-18 109.6 2.7 57 214-270 8-68 (76)
121 2da6_A Hepatocyte nuclear fact 99.3 7.3E-13 2.5E-17 113.2 5.1 61 212-272 4-89 (102)
122 2ecb_A Zinc fingers and homeob 99.3 6.9E-13 2.3E-17 111.0 4.7 37 220-256 17-57 (89)
123 3nau_A Zinc fingers and homeob 99.3 4.8E-13 1.6E-17 105.5 3.4 46 224-269 18-63 (66)
124 3nar_A ZHX1, zinc fingers and 99.3 3.3E-13 1.1E-17 114.1 1.9 59 212-270 23-85 (96)
125 1x2n_A Homeobox protein pknox1 99.3 1E-12 3.5E-17 105.4 4.4 58 212-269 5-69 (73)
126 1b72_B Protein (PBX1); homeodo 99.3 5E-13 1.7E-17 110.7 2.2 58 215-272 2-66 (87)
127 1puf_B PRE-B-cell leukemia tra 99.3 1E-12 3.6E-17 105.4 4.0 57 215-271 2-65 (73)
128 1du6_A PBX1, homeobox protein 99.3 5.3E-13 1.8E-17 104.3 1.1 54 214-267 3-63 (64)
129 1k61_A Mating-type protein alp 99.3 1.4E-12 4.7E-17 100.7 3.2 50 218-267 2-58 (60)
130 3k2a_A Homeobox protein MEIS2; 99.3 8.8E-13 3E-17 104.5 2.0 56 113-168 4-62 (67)
131 2dmn_A Homeobox protein TGIF2L 99.3 2.6E-12 8.9E-17 105.9 4.8 59 212-270 5-70 (83)
132 2l9r_A Homeobox protein NKX-3. 99.3 7.7E-13 2.6E-17 105.6 1.3 46 224-269 18-63 (69)
133 1ic8_A Hepatocyte nuclear fact 99.3 4.7E-13 1.6E-17 127.1 -0.0 62 103-164 111-193 (194)
134 1e3o_C Octamer-binding transcr 99.3 1.3E-12 4.4E-17 120.4 2.7 59 210-268 97-159 (160)
135 2e19_A Transcription factor 8; 99.3 6.5E-13 2.2E-17 104.4 0.4 44 224-267 17-60 (64)
136 2dmp_A Zinc fingers and homeob 99.2 3.2E-12 1.1E-16 106.8 4.4 47 220-266 19-69 (89)
137 1au7_A Protein PIT-1, GHF-1; c 99.2 9.7E-13 3.3E-17 119.6 1.3 57 212-268 85-145 (146)
138 1lfb_A Liver transcription fac 99.2 8.6E-13 2.9E-17 112.5 -0.1 59 212-270 7-90 (99)
139 1mnm_C Protein (MAT alpha-2 tr 99.2 4E-12 1.4E-16 105.5 3.7 54 213-266 26-86 (87)
140 3d1n_I POU domain, class 6, tr 99.2 3.1E-12 1.1E-16 116.7 3.3 56 212-267 91-150 (151)
141 2xsd_C POU domain, class 3, tr 99.2 2.1E-12 7.3E-17 119.5 2.0 59 212-270 97-159 (164)
142 1le8_B Mating-type protein alp 99.2 4E-12 1.4E-16 104.7 2.9 53 216-268 4-63 (83)
143 3l1p_A POU domain, class 5, tr 99.2 5.6E-12 1.9E-16 115.6 2.6 56 212-267 94-153 (155)
144 2h8r_A Hepatocyte nuclear fact 99.2 4.9E-12 1.7E-16 121.7 2.2 61 102-162 137-218 (221)
145 2d5v_A Hepatocyte nuclear fact 99.2 5.4E-12 1.9E-16 116.4 1.6 59 212-270 95-157 (164)
146 3k2a_A Homeobox protein MEIS2; 99.1 2.7E-11 9.4E-16 95.9 1.2 52 220-271 4-62 (67)
147 2lk2_A Homeobox protein TGIF1; 99.1 7.4E-11 2.5E-15 98.4 3.8 58 112-169 10-70 (89)
148 2da7_A Zinc finger homeobox pr 99.0 4.6E-11 1.6E-15 94.9 1.9 46 116-161 14-59 (71)
149 1ic8_A Hepatocyte nuclear fact 98.9 8.3E-11 2.8E-15 111.6 -0.1 56 212-267 113-193 (194)
150 1mh3_A Maltose binding-A1 home 98.9 6.6E-11 2.3E-15 121.7 -1.6 57 107-163 365-421 (421)
151 2da7_A Zinc finger homeobox pr 98.9 3.5E-10 1.2E-14 89.9 2.4 40 225-264 20-59 (71)
152 2lk2_A Homeobox protein TGIF1; 98.8 1.6E-09 5.5E-14 90.3 3.8 48 225-272 20-70 (89)
153 2h8r_A Hepatocyte nuclear fact 98.8 1.2E-09 4.1E-14 105.1 2.5 55 211-265 139-218 (221)
154 1mh3_A Maltose binding-A1 home 98.7 2.5E-09 8.5E-14 109.9 0.5 50 217-266 368-421 (421)
155 2nzz_A Penetratin conjugated G 98.0 7E-07 2.4E-11 62.5 0.2 20 338-357 3-22 (37)
156 2nzz_A Penetratin conjugated G 98.0 4.3E-07 1.5E-11 63.6 -1.0 23 149-171 1-23 (37)
157 2ys9_A Homeobox and leucine zi 77.0 0.62 2.1E-05 36.8 0.6 39 119-157 18-56 (70)
158 2ys9_A Homeobox and leucine zi 63.5 2.4 8.1E-05 33.4 1.2 38 224-261 20-57 (70)
159 2rgt_A Fusion of LIM/homeobox 46.0 0.64 2.2E-05 42.0 -5.5 30 105-134 134-163 (169)
160 2glo_A Brinker CG9653-PA; prot 23.4 25 0.00086 25.5 0.9 44 112-156 4-47 (59)
161 3hug_A RNA polymerase sigma fa 22.1 34 0.0012 27.0 1.6 31 239-269 55-85 (92)
162 2elh_A CG11849-PA, LD40883P; s 21.5 29 0.001 27.3 1.0 42 109-155 18-59 (87)
No 1
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.66 E-value=3.9e-17 Score=134.03 Aligned_cols=66 Identities=50% Similarity=0.740 Sum_probs=59.4
Q ss_pred hhhcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 102 RLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 102 ~~~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
..+++.+|.|+.|+.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+...
T Consensus 13 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 13 ALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ----CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 345778889999999999999999999999999999999999999999999999999999998654
No 2
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.64 E-value=2.9e-17 Score=135.51 Aligned_cols=63 Identities=22% Similarity=0.320 Sum_probs=59.1
Q ss_pred hcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 104 ~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
.++.+|.|+.|+.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+..
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999999999998753
No 3
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.64 E-value=8.2e-17 Score=130.92 Aligned_cols=66 Identities=29% Similarity=0.386 Sum_probs=61.1
Q ss_pred hcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHH
Q psy2181 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 169 (490)
Q Consensus 104 ~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~ 169 (490)
.++.+|.|+.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+.....
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 456778899999999999999999999999999999999999999999999999999999876553
No 4
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-17 Score=134.55 Aligned_cols=62 Identities=32% Similarity=0.448 Sum_probs=58.4
Q ss_pred hcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 104 ~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
.++.+|.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+.
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 35677889999999999999999999999999999999999999999999999999998864
No 5
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.4e-16 Score=130.51 Aligned_cols=66 Identities=67% Similarity=0.850 Sum_probs=61.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 170 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~ 170 (490)
.+.+|.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+..+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 345778999999999999999999999999999999999999999999999999999999877654
No 6
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.63 E-value=3.4e-17 Score=133.69 Aligned_cols=61 Identities=25% Similarity=0.297 Sum_probs=58.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
.+.+|.|+.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 5667889999999999999999999999999999999999999999999999999999874
No 7
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.62 E-value=1.6e-16 Score=129.18 Aligned_cols=65 Identities=26% Similarity=0.327 Sum_probs=60.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 169 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~ 169 (490)
++.+|.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+..+..
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 45677899999999999999999999999999999999999999999999999999999987653
No 8
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.62 E-value=1.1e-16 Score=125.32 Aligned_cols=60 Identities=32% Similarity=0.345 Sum_probs=55.8
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 107 LQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 107 ~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
.+|.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+.+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 467899999999999999999999999999999999999999999999999999999853
No 9
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.62 E-value=9.9e-17 Score=124.60 Aligned_cols=58 Identities=31% Similarity=0.491 Sum_probs=52.9
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHH
Q psy2181 107 LQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164 (490)
Q Consensus 107 ~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr 164 (490)
.+|.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4678899999999999999999999999999999999999999999999999999886
No 10
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.62 E-value=4.6e-17 Score=133.70 Aligned_cols=60 Identities=25% Similarity=0.260 Sum_probs=56.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFER----THYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer----~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr 164 (490)
++.+|.||.||.+|+++||..|+. ++||+..+|++||..|||++.+|+|||||||+|+++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 466788999999999999999999 999999999999999999999999999999999764
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-16 Score=126.63 Aligned_cols=62 Identities=40% Similarity=0.546 Sum_probs=57.9
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
.+.+|.|+.|+.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34577899999999999999999999999999999999999999999999999999998753
No 12
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.61 E-value=5.8e-17 Score=126.33 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=52.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 106 K~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
+.+|.|+.|+.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 356789999999999999999999999999999999999999999999999999998864
No 13
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=1.9e-16 Score=121.60 Aligned_cols=57 Identities=25% Similarity=0.460 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHH
Q psy2181 108 QRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164 (490)
Q Consensus 108 rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr 164 (490)
+|.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999986
No 14
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.5e-16 Score=128.69 Aligned_cols=64 Identities=28% Similarity=0.304 Sum_probs=59.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 168 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~ 168 (490)
.+.+|.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 3467789999999999999999999999999999999999999999999999999999986543
No 15
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=1.1e-16 Score=127.84 Aligned_cols=61 Identities=18% Similarity=0.339 Sum_probs=57.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
++.+|.|+.|+.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 4567789999999999999999999999999999999999999999999999999998874
No 16
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.61 E-value=1.3e-16 Score=134.47 Aligned_cols=66 Identities=29% Similarity=0.375 Sum_probs=60.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 170 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~~ 170 (490)
.+.+|.||.||.+|+.+||..|+.++||+..+|++||..+||++.+|+|||||||+|+|+......
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 456788999999999999999999999999999999999999999999999999999998765443
No 17
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.60 E-value=2.7e-16 Score=124.93 Aligned_cols=63 Identities=29% Similarity=0.379 Sum_probs=58.8
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHH
Q psy2181 107 LQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 169 (490)
Q Consensus 107 ~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~ 169 (490)
.+|.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 467899999999999999999999999999999999999999999999999999999876543
No 18
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=2.6e-16 Score=128.81 Aligned_cols=63 Identities=46% Similarity=0.653 Sum_probs=59.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
++.+|.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+..+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 456788999999999999999999999999999999999999999999999999999988653
No 19
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.60 E-value=2.4e-16 Score=125.24 Aligned_cols=60 Identities=28% Similarity=0.335 Sum_probs=57.0
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 107 LQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 107 ~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
++|.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 467889999999999999999999999999999999999999999999999999999864
No 20
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.60 E-value=5.5e-17 Score=133.32 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=55.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFER-----THYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer-----~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr 164 (490)
.+++|.||.||.+|+++|| .|.. ++||+..+|++||..|||++.+|+|||||||+|+++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 5567889999999999999 7999 999999999999999999999999999999999764
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-16 Score=126.20 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=58.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
++.+|.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45678899999999999999999999999999999999999999999999999999998753
No 22
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-16 Score=126.20 Aligned_cols=61 Identities=26% Similarity=0.303 Sum_probs=57.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
.+.+|.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 4567889999999999999999999999999999999999999999999999999998864
No 23
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=4.1e-16 Score=124.41 Aligned_cols=61 Identities=28% Similarity=0.329 Sum_probs=57.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 106 K~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
+.++.|+.|+.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 3456788999999999999999999999999999999999999999999999999998864
No 24
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-16 Score=130.30 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=57.9
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhc----CCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERT----HYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~----~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
++.+|.||.||.+|+.+||.+|+.+ +||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 5667889999999999999999999 999999999999999999999999999999999874
No 25
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.59 E-value=2.5e-16 Score=125.09 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=57.6
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 107 LQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 107 ~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
++|.|+.||.+|+.+||..|..++||+..++++||..+||++.+|+|||+|||+|+|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4678999999999999999999999999999999999999999999999999999998653
No 26
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.59 E-value=3.3e-16 Score=126.12 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=58.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
.+.+|.|+.|+.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999998753
No 27
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-16 Score=126.78 Aligned_cols=61 Identities=21% Similarity=0.386 Sum_probs=57.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
.+.+|.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 4567789999999999999999999999999999999999999999999999999998764
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.59 E-value=3.8e-16 Score=120.89 Aligned_cols=58 Identities=38% Similarity=0.545 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 108 QRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 108 rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
+|.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678999999999999999999999999999999999999999999999999999874
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.59 E-value=1.5e-16 Score=126.30 Aligned_cols=62 Identities=37% Similarity=0.529 Sum_probs=58.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 106 K~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
+.+|.|+.|+..|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+..+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 45778999999999999999999999999999999999999999999999999999998654
No 30
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.59 E-value=2.3e-16 Score=129.62 Aligned_cols=61 Identities=30% Similarity=0.353 Sum_probs=54.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 106 K~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
+.+|.|+.|+.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 3567899999999999999999999999999999999999999999999999999998754
No 31
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.59 E-value=1.8e-16 Score=132.04 Aligned_cols=61 Identities=31% Similarity=0.351 Sum_probs=54.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
++.+|.|+.||.+|+.+||..|+.++||+..+|++||..|||++.+|+|||||||+|+|+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 3457789999999999999999999999999999999999999999999999999999874
No 32
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.58 E-value=2.5e-16 Score=122.16 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=48.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNL 163 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~k 163 (490)
++.+|.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||+|||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 56678899999999999999999999999999999999999999999999999999864
No 33
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.58 E-value=2.4e-16 Score=124.32 Aligned_cols=60 Identities=25% Similarity=0.368 Sum_probs=56.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 106 K~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
+.+|.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 356789999999999999999999999999999999999999999999999999998763
No 34
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.57 E-value=3.5e-16 Score=121.09 Aligned_cols=58 Identities=55% Similarity=0.741 Sum_probs=50.5
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 110 NRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 110 ~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4789999999999999999999999999999999999999999999999999988653
No 35
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=6.9e-16 Score=125.38 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 110 NRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 110 ~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
.|+.||.+|+.+||.+|..++||+..+|++||..+||++.+|+|||||||+|+|+.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 35569999999999999999999999999999999999999999999999998864
No 36
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.57 E-value=6e-16 Score=118.40 Aligned_cols=57 Identities=23% Similarity=0.406 Sum_probs=54.0
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHH
Q psy2181 107 LQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNL 163 (490)
Q Consensus 107 ~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~k 163 (490)
++|.|+.|+.+|+.+||..|+.++||+..++++||..+||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 356789999999999999999999999999999999999999999999999999864
No 37
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.56 E-value=8e-16 Score=117.58 Aligned_cols=54 Identities=28% Similarity=0.357 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 112 TSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 112 T~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
|.|+.+|+.+||..|+.++||+..+|++||..+||++.+|+|||||||+|+|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999874
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=1.1e-15 Score=123.08 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 108 QRNRTSFTNEQIDSLEKEFER-THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 108 rR~RT~FT~~Ql~~LE~~Fer-~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
.+.|+.||.+|+.+||..|+. ++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 456889999999999999995 99999999999999999999999999999999999865
No 39
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.56 E-value=6.4e-16 Score=124.49 Aligned_cols=63 Identities=51% Similarity=0.700 Sum_probs=58.7
Q ss_pred hcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 104 ~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
.++.+|.|+.|+.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 356678899999999999999999999999999999999999999999999999999988743
No 40
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1e-15 Score=129.87 Aligned_cols=89 Identities=19% Similarity=0.164 Sum_probs=59.5
Q ss_pred HcCCCCCceeEechhhhhhHHHHHHHHHHhhccCcchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy2181 143 KIGLPEARIQVSSINRVLRNLAAQKEQQASAHNQTSETVYDKLRMFNGQPGWAWYPGSTPTPSPAHLALPHNPGSVTPIS 222 (490)
Q Consensus 143 ~lgLs~~qVqvWFqNRR~k~kr~~k~~~~~~~~~~~~~~~~k~~~~~g~pgwpwyp~s~~~~~p~~~~~~~~rr~rT~ft 222 (490)
.++++..+|..||++.|..-+.... ...+....++.||.||
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~~~~---------------------------------------~~~~~~~~rr~Rt~ft 42 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKTAKV---------------------------------------SEPGLGSPSGLRTNFT 42 (97)
T ss_dssp ------CCCCGGGGC-----------------------------------------------------------CCCCCC
T ss_pred CCCCCCcccccccccccCCCCCCCC---------------------------------------CCCCCCCCCCCCcCcC
Confidence 4677888999999998865332110 0011234578899999
Q ss_pred hh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 223 RD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 223 ~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
.+ ||..|..++||+..+|++||..|||++.+|+|||||||+|.||..+
T Consensus 43 ~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 43 TRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 86 4899999999999999999999999999999999999999998765
No 41
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.55 E-value=1.4e-15 Score=122.01 Aligned_cols=58 Identities=22% Similarity=0.290 Sum_probs=55.0
Q ss_pred CCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 109 RNRTSFTNEQIDSLEKEFER-THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 109 R~RT~FT~~Ql~~LE~~Fer-~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
+.|+.|+.+|+.+||..|.. ++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 46789999999999999996 99999999999999999999999999999999998865
No 42
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.1e-15 Score=129.72 Aligned_cols=63 Identities=27% Similarity=0.375 Sum_probs=55.8
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
.+.++.|+.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+..+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 345678899999999999999999999999999999999999999999999999999998654
No 43
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-15 Score=120.91 Aligned_cols=59 Identities=37% Similarity=0.474 Sum_probs=56.0
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 108 QRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 108 rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
+|.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 57889999999999999999999999999999999999999999999999999988753
No 44
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.1e-15 Score=129.44 Aligned_cols=62 Identities=21% Similarity=0.176 Sum_probs=55.7
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
...+|.|+.|+.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+..
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 44567889999999999999999999999999999999999999999999999999998754
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=2e-15 Score=127.58 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=60.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC---------------CCCCceeEechhhhhhHHHHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIG---------------LPEARIQVSSINRVLRNLAAQKE 168 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lg---------------Ls~~qVqvWFqNRR~k~kr~~k~ 168 (490)
++.+|.|+.|+..|+.+||..|+.++||+..+|++||+.|+ |++.+|++||||||+|+|+..+.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 56788999999999999999999999999999999999999 99999999999999999887654
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-15 Score=121.71 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=56.3
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 107 LQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 107 ~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
.++.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 356789999999999999999999999999999999999999999999999999988754
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=4e-15 Score=119.54 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=56.9
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer---~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
++.++.|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.+|+|||||||+|+++.
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 456778899999999999999987 9999999999999999999999999999999999875
No 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4e-15 Score=120.46 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=53.6
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 110 NRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 110 ~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 345699999999999999999999999999999999999999999999999998854
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-15 Score=122.81 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 109 R~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
+.|+.||.+|+.+||..|+.++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 3578899999999999999999999999999999999999999999999999988743
No 50
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=1.3e-14 Score=118.73 Aligned_cols=64 Identities=50% Similarity=0.645 Sum_probs=57.7
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHHHhh
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQAS 275 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~~~~ 275 (490)
...++.||.||.+ ||..|..++||+..++++||..|||++.+|+|||||||+|+|+..+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~~ 72 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQR 72 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhcc
Confidence 4567889999986 489999999999999999999999999999999999999999988766533
No 51
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.5e-15 Score=125.50 Aligned_cols=66 Identities=23% Similarity=0.201 Sum_probs=61.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHc---------------------CCCCCceeEechhhhhhHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKI---------------------GLPEARIQVSSINRVLRNL 163 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~l---------------------gLs~~qVqvWFqNRR~k~k 163 (490)
++.+|.|+.|+..|+.+||+.|+.++||+..+|++||+.| +|++.+|+|||||||++++
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 5678899999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHH
Q psy2181 164 AAQKEQQ 170 (490)
Q Consensus 164 r~~k~~~ 170 (490)
+..+...
T Consensus 84 r~~~~~~ 90 (102)
T 2da6_A 84 FRQKLAM 90 (102)
T ss_dssp HHHHHHH
T ss_pred HhhHhhh
Confidence 8766654
No 52
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=4.7e-15 Score=117.11 Aligned_cols=58 Identities=24% Similarity=0.247 Sum_probs=54.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHcCCCCCceeEechhhhhhH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFER-THYPDVFARERLADKIGLPEARIQVSSINRVLRN 162 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer-~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~ 162 (490)
++.+|.||.|+.+||.+|+..|+. ++|||..+|++||..+||++++|+|||||||.-.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 456889999999999999999999 9999999999999999999999999999999653
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.49 E-value=7.5e-15 Score=117.93 Aligned_cols=61 Identities=25% Similarity=0.352 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHH
Q psy2181 108 QRNRTSFTNEQIDSLEKEF---ERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 168 (490)
Q Consensus 108 rR~RT~FT~~Ql~~LE~~F---er~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~ 168 (490)
+|.|+.|+.+|+.+||.+| ..++||+..++++||..+||++.+|++||||||+|+++....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5678899999999999999 899999999999999999999999999999999999875443
No 54
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.49 E-value=2.7e-14 Score=115.97 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHH
Q psy2181 211 LPHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 272 (490)
Q Consensus 211 ~~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~ 272 (490)
....++.||.||.+ ||..|..++||+..+|++||..+||++.+|+|||||||+|+|+..+..
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 45677899999986 489999999999999999999999999999999999999999988753
No 55
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.49 E-value=5.7e-15 Score=122.49 Aligned_cols=62 Identities=24% Similarity=0.333 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHH
Q psy2181 108 QRNRTSFTNEQIDSLEKEF---ERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 169 (490)
Q Consensus 108 rR~RT~FT~~Ql~~LE~~F---er~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~ 169 (490)
+|.|+.|+.+|+.+||.+| ..++||+..++++||..+||++.+|++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 5678899999999999999 8999999999999999999999999999999999999865443
No 56
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.49 E-value=2.3e-14 Score=116.41 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=55.5
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 272 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~ 272 (490)
.+.++.||.||.+ ||..|..++||+..+|++||..+||++.+|+|||||||+|.|+.++.+
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 4567889999986 589999999999999999999999999999999999999999877643
No 57
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.48 E-value=2.5e-15 Score=128.23 Aligned_cols=67 Identities=25% Similarity=0.293 Sum_probs=53.6
Q ss_pred hhhcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHH------------------cC---CCCCceeEechhhhh
Q psy2181 102 RLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADK------------------IG---LPEARIQVSSINRVL 160 (490)
Q Consensus 102 ~~~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~------------------lg---Ls~~qVqvWFqNRR~ 160 (490)
+.+++.+|.|+.|+..|+.+||..|+.++||+...|++||.. || |++.+|+|||||||+
T Consensus 4 ~~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 4 DPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp ---------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 345778889999999999999999999999999999999999 88 999999999999999
Q ss_pred hHHHHHHH
Q psy2181 161 RNLAAQKE 168 (490)
Q Consensus 161 k~kr~~k~ 168 (490)
++++..+.
T Consensus 84 k~k~k~~~ 91 (99)
T 1lfb_A 84 EEAFRHKL 91 (99)
T ss_dssp TTSCCC--
T ss_pred HHHHhchh
Confidence 88765543
No 58
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.48 E-value=3.2e-15 Score=117.01 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=54.6
Q ss_pred cCCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHH
Q psy2181 107 LQRNRTSFTNEQIDSLEKEF---ERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164 (490)
Q Consensus 107 ~rR~RT~FT~~Ql~~LE~~F---er~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr 164 (490)
.++.|+.|+.+|+.+||.+| ..++||+..++++||..+||++.+|++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 45678899999999999999 89999999999999999999999999999999999864
No 59
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.48 E-value=8.8e-15 Score=113.10 Aligned_cols=54 Identities=26% Similarity=0.305 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHH
Q psy2181 111 RTSFTNEQIDSLEKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164 (490)
Q Consensus 111 RT~FT~~Ql~~LE~~Fer---~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr 164 (490)
|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.+|++||+|||+|+|+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 568999999999999999 999999999999999999999999999999999886
No 60
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.48 E-value=6.5e-15 Score=135.80 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=54.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
.+++|.||.|+..|+.+||..|..++||+..+|++||..+||++.+|+|||||||+|+|+.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4667889999999999999999999999999999999999999999999999999999863
No 61
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.47 E-value=2.1e-14 Score=121.02 Aligned_cols=62 Identities=21% Similarity=0.241 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHH
Q psy2181 211 LPHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 272 (490)
Q Consensus 211 ~~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~ 272 (490)
.++.++.||.||.+ ||..|..++||+..+|++||..+||++.+|+|||||||+|+|+..+..
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 35678899999986 589999999999999999999999999999999999999999987644
No 62
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.47 E-value=7.7e-15 Score=135.95 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=52.1
Q ss_pred hcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 104 ~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
.++++|.||+|+..|+.+||..|..++||+..+|++||..+||++.+|+|||||||+|+|+..+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4566788999999999999999999999999999999999999999999999999999988654
No 63
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.9e-14 Score=116.66 Aligned_cols=59 Identities=22% Similarity=0.243 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 211 LPHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 211 ~~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
..+.++.||.||.+ ||..|..++||+..+|++||..|||++.+|+|||||||+|+||..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 45678899999986 489999999999999999999999999999999999999998743
No 64
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.47 E-value=1.5e-14 Score=114.76 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=53.6
Q ss_pred CCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 271 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~ 271 (490)
.++.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|.|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 46889999986 48999999999999999999999999999999999999999987764
No 65
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.47 E-value=2.6e-14 Score=109.59 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=49.7
Q ss_pred CCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 215 PGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 215 rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
|+.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|.||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 4678999986 4899999999999999999999999999999999999999986
No 66
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.46 E-value=2.4e-14 Score=111.89 Aligned_cols=55 Identities=27% Similarity=0.224 Sum_probs=50.4
Q ss_pred CCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 268 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~ 268 (490)
.++.||.||.+ ||..|..++||+...+++||..+||++.+|+|||||||+|.||.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 46889999986 48999999999999999999999999999999999999999985
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.46 E-value=1.5e-14 Score=114.10 Aligned_cols=53 Identities=26% Similarity=0.302 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 114 FTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 114 FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
-|.+|+.+||..|..++||+..+|++||..+||++.+|++||||||+|+|+..
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999998753
No 68
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.46 E-value=1.7e-14 Score=111.90 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=47.8
Q ss_pred CCCCCCCCChhh----HHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 214 NPGSVTPISRDD----AKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 214 ~rr~rT~ft~eq----e~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
.++.||.||.+| |..|..++||+..++++||..+||++.+|+|||||||+|.||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 578899999864 899999999999999999999999999999999999999886
No 69
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=1.4e-14 Score=121.21 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 113 SFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 113 ~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
.||.+||.+||..|..++||+..+|++||..|||++.+|+|||||||+|+++..
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 699999999999999999999999999999999999999999999999998754
No 70
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.46 E-value=9e-15 Score=133.01 Aligned_cols=62 Identities=23% Similarity=0.332 Sum_probs=55.1
Q ss_pred hcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 104 ~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
.++++|.||.|+..|+.+||..|..++||+..+|++||..+||++.+|+|||||||+|+|+.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 35667789999999999999999999999999999999999999999999999999998863
No 71
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.46 E-value=3.9e-14 Score=115.44 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 211 LPHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 211 ~~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
..+.++.||.||.+ ||..|..++||+..++++||..|||++.+|+|||||||+|+||.+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 45678899999986 489999999999999999999999999999999999999998743
No 72
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.46 E-value=1.5e-14 Score=120.13 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=55.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNL 163 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer---~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~k 163 (490)
.++++.|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.+|++||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 345566889999999999999999 99999999999999999999999999999999986
No 73
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.4e-14 Score=114.04 Aligned_cols=59 Identities=29% Similarity=0.327 Sum_probs=53.5
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
...++.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|+|+..+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 3467889999986 4899999999999999999999999999999999999999998543
No 74
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.46 E-value=2.5e-14 Score=118.07 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=56.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 106 KLQRNRTSFTNEQIDSLEKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 106 K~rR~RT~FT~~Ql~~LE~~Fer---~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
++++.|+.|+.+|+.+|+.+|.. ++||+..+|++||..+||++.||+|||||||+|+++..
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 45677889999999999999988 59999999999999999999999999999999988753
No 75
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.5e-14 Score=115.26 Aligned_cols=60 Identities=22% Similarity=0.151 Sum_probs=54.7
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 271 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~ 271 (490)
...++.||.||.+ ||..|..++||+..++++||..|||++.+|+|||||||+|+||....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 3567899999986 48999999999999999999999999999999999999999987653
No 76
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.45 E-value=5.2e-15 Score=119.06 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=51.6
Q ss_pred CCCCCCHHHHHHHHHHh-hhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHH
Q psy2181 110 NRTSFTNEQIDSLEKEF-ERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164 (490)
Q Consensus 110 ~RT~FT~~Ql~~LE~~F-er~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr 164 (490)
.|..++.+|+.+||..| +.++||+..+|++||..+||++.+|+|||||||+|+|+
T Consensus 11 ~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 11 DSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 45568899999999999 99999999999999999999999999999999999875
No 77
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.45 E-value=4.3e-14 Score=115.80 Aligned_cols=60 Identities=40% Similarity=0.500 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 211 LPHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 211 ~~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
..+.++.||.||.+ ||..|..++||+...|++||..+||++.+|+|||||||+|+||+.+
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 34577899999986 4899999999999999999999999999999999999999998765
No 78
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.45 E-value=2.5e-14 Score=110.64 Aligned_cols=54 Identities=31% Similarity=0.378 Sum_probs=50.0
Q ss_pred CCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHH
Q psy2181 215 PGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 268 (490)
Q Consensus 215 rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~ 268 (490)
++.||.||.+ ||..|..++||+..++++||..+||++.+|++||||||+|.|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999986 48999999999999999999999999999999999999999874
No 79
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.45 E-value=1.9e-14 Score=118.03 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCCChhh----HHHHHh----hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 210 ALPHNPGSVTPISRDD----AKEFER----THYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 210 ~~~~~rr~rT~ft~eq----e~~F~~----n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
...+.||.||.||.+| |..|+. ++||+..+|++||..|||++.+|+|||||||+|.|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3456788999999864 889999 999999999999999999999999999999999764
No 80
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.45 E-value=1.9e-14 Score=131.39 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=57.8
Q ss_pred hcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHH
Q psy2181 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164 (490)
Q Consensus 104 ~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr 164 (490)
.++++|.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4567788999999999999999999999999999999999999999999999999999875
No 81
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.45 E-value=1.1e-14 Score=115.55 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=53.3
Q ss_pred CCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 271 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~ 271 (490)
.++.||.||.+ ||..|..++||+...+++||..+||++.+|+|||||||+|.|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 46789999986 58999999999999999999999999999999999999999987653
No 82
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=2.3e-14 Score=117.19 Aligned_cols=59 Identities=37% Similarity=0.497 Sum_probs=54.2
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
.+.++.||.||.+ ||..|+.++||+..+|++||..+||++.+|+|||||||+|+|++++
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 4568899999986 4899999999999999999999999999999999999999998654
No 83
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.45 E-value=1.1e-14 Score=113.37 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 268 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~ 268 (490)
.++.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|.|+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 56889999986 58999999999999999999999999999999999999998874
No 84
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.45 E-value=2e-14 Score=118.41 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 211 LPHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 211 ~~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
..+.++.||.||.+ ||..|..++||+..+|++||..|||++.+|+|||||||+|+||.++
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 35678899999986 4899999999999999999999999999999999999999987543
No 85
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.45 E-value=1.8e-14 Score=114.43 Aligned_cols=57 Identities=23% Similarity=0.221 Sum_probs=52.7
Q ss_pred CCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
.++.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|+|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 46789999986 4899999999999999999999999999999999999999998654
No 86
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=3.1e-14 Score=113.53 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=53.1
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
...++.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|+||..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 4567889999986 489999999999999999999999999999999999999998743
No 87
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.44 E-value=2.3e-14 Score=110.82 Aligned_cols=54 Identities=52% Similarity=0.602 Sum_probs=45.3
Q ss_pred CCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 217 SVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 217 ~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
+||.||.+ ||..|..++||+...+++||..+||++.+|++||||||+|.||.++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 57899986 4899999999999999999999999999999999999999998765
No 88
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.44 E-value=3e-14 Score=116.94 Aligned_cols=58 Identities=22% Similarity=0.214 Sum_probs=49.2
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
...++.||.||.+ ||..|..++||+..+|++||..+||++.+|+|||||||+|+||..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 3467889999986 589999999999999999999999999999999999999999854
No 89
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.43 E-value=7.3e-14 Score=111.34 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=53.2
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
+..++.|+.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|+|+.+
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4567889999986 489999999999999999999999999999999999999999864
No 90
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.43 E-value=4.9e-14 Score=113.36 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 211 LPHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 211 ~~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
....++.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|.||..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 35678899999986 489999999999999999999999999999999999999998754
No 91
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.43 E-value=2.6e-14 Score=117.83 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 110 NRTSFTNEQIDSLEKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 110 ~RT~FT~~Ql~~LE~~Fer---~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
.|++|+.+|+.+||.+|.. ++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 5 rr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 4556999999999999999 99999999999999999999999999999999998753
No 92
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.4e-14 Score=118.77 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 113 SFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 113 ~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
.||.+||.+||..|..++||+..+|++||..+||++.+|+|||||||+|+++..+
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 3999999999999999999999999999999999999999999999999877543
No 93
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.43 E-value=2.5e-14 Score=117.43 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCChhh----HHHHHh-----hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 211 LPHNPGSVTPISRDD----AKEFER-----THYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 211 ~~~~rr~rT~ft~eq----e~~F~~-----n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
..+.||.||.||.+| | +|.. ++||+..+|++||..|||++.+|+|||||||+|+++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 456788999999864 7 8999 999999999999999999999999999999998764
No 94
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.42 E-value=5.3e-14 Score=112.01 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=53.1
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
...++.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|+||..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 4567899999986 489999999999999999999999999999999999999998743
No 95
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=7.3e-14 Score=112.28 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=51.8
Q ss_pred CCCCCCCCChh----hHHHHHh-hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEFER-THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F~~-n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
.++.||.||.+ ||..|+. ++||+..+|++||..+||++.+|+|||||||+|.||.++
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 35678999986 5899995 999999999999999999999999999999999998764
No 96
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.42 E-value=5.3e-14 Score=112.01 Aligned_cols=58 Identities=22% Similarity=0.255 Sum_probs=53.3
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
...++.||.||.+ ||..|+.++||+..++++||..+||++.+|+|||||||+|.|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4568899999986 489999999999999999999999999999999999999998754
No 97
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=8.3e-14 Score=113.14 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=48.8
Q ss_pred CCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 216 GSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 216 r~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
..|+.||.+ |++.|+.++||+..+|++||..+||++.+|+|||||||+|.|+.+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 356779986 489999999999999999999999999999999999999998743
No 98
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.4e-14 Score=112.62 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=52.5
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 268 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~ 268 (490)
...++.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|+||.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 4567889999986 48999999999999999999999999999999999999998874
No 99
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.41 E-value=2.4e-14 Score=113.52 Aligned_cols=57 Identities=28% Similarity=0.335 Sum_probs=53.0
Q ss_pred CCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
.++.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|+|+..+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 57889999986 4899999999999999999999999999999999999999998765
No 100
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.41 E-value=7.3e-14 Score=111.92 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=51.1
Q ss_pred CCCCCCCChh----hHHHHHh-hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 215 PGSVTPISRD----DAKEFER-THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 215 rr~rT~ft~e----qe~~F~~-n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
.+.||.||.+ ||..|+. ++||+...|++||..+||++.+|+|||||||+|.||..+
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 4578999986 5899996 999999999999999999999999999999999998664
No 101
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.41 E-value=7.2e-14 Score=106.68 Aligned_cols=50 Identities=24% Similarity=0.279 Sum_probs=45.2
Q ss_pred CCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHH
Q psy2181 219 TPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 268 (490)
Q Consensus 219 T~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~ 268 (490)
|.||.+ ||..|..++||+..+|++||..+||++.+|+|||||||+|.||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 567875 58999999999999999999999999999999999999999984
No 102
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.41 E-value=3.2e-14 Score=118.44 Aligned_cols=58 Identities=22% Similarity=0.211 Sum_probs=49.9
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
...++.||.||.+ ||..|..++||+..+|++||..+||++.+|+|||||||+|+||..
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 4577899999986 489999999999999999999999999999999999999999753
No 103
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.41 E-value=4.9e-14 Score=110.99 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=51.7
Q ss_pred CCCCCCCCCChhh----HHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHH
Q psy2181 213 HNPGSVTPISRDD----AKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 268 (490)
Q Consensus 213 ~~rr~rT~ft~eq----e~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~ 268 (490)
+.++.||.||.+| |..|..++||+..++++||..+||++.+|++||||||+|.|+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 4678999999864 8999999999999999999999999999999999999998764
No 104
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.41 E-value=2.8e-14 Score=113.97 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHH
Q psy2181 113 SFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 166 (490)
Q Consensus 113 ~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~ 166 (490)
.+|..|+.+||..|+.++||+..+|++||..+||++++|+|||||||+|+|+..
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 579999999999999999999999999999999999999999999999988743
No 105
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=4e-14 Score=111.40 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHH
Q psy2181 112 TSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164 (490)
Q Consensus 112 T~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr 164 (490)
..++.+|+.+||..|..++||+..+|++||..+||++++|+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 45789999999999999999999999999999999999999999999998654
No 106
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.40 E-value=6.8e-14 Score=112.56 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCChhh----HHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 211 LPHNPGSVTPISRDD----AKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 211 ~~~~rr~rT~ft~eq----e~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
++..++.||.||.+| |..|..++||+..++++||..+||++.+|+|||||||+|+||.++
T Consensus 3 ~~~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 3 MPDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 356678899999864 899999999999999999999999999999999999999987543
No 107
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=7.3e-14 Score=114.15 Aligned_cols=57 Identities=12% Similarity=-0.072 Sum_probs=52.7
Q ss_pred CCCCCCCCCCChh----hHHHHHhh----CCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERT----HYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 268 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n----~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~ 268 (490)
.+.++.||.||.+ ||..|+.+ +||+..+|++||.++||++.+|+|||||||+|+|+.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 4578899999986 48999999 999999999999999999999999999999999874
No 108
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.39 E-value=6.3e-14 Score=128.62 Aligned_cols=61 Identities=26% Similarity=0.312 Sum_probs=57.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~ 165 (490)
++.+|.|+.|+..|+.+||..|+.++||+..+|++||..+||++.+|+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4567789999999999999999999999999999999999999999999999999999874
No 109
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.39 E-value=3.5e-14 Score=114.27 Aligned_cols=59 Identities=37% Similarity=0.476 Sum_probs=53.7
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
.+.++.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|+||..+
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 4567889999986 5899999999999999999999999999999999999999988544
No 110
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.39 E-value=1e-13 Score=105.82 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=48.8
Q ss_pred CCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNL 266 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~k 266 (490)
.++.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 36789999986 488999999999999999999999999999999999999864
No 111
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=109.27 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=52.0
Q ss_pred CCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
.|+.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|.|+..+
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 36789999986 4899999999999999999999999999999999999999987543
No 112
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.38 E-value=2.1e-13 Score=107.76 Aligned_cols=54 Identities=26% Similarity=0.250 Sum_probs=49.7
Q ss_pred CCCCCCCCCCChhh----HHHHHh-hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHH
Q psy2181 212 PHNPGSVTPISRDD----AKEFER-THYPDVFARERLADKIGLPEARIQVSSINRVLRN 265 (490)
Q Consensus 212 ~~~rr~rT~ft~eq----e~~F~~-n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~ 265 (490)
...+|.||.|+.+| +.+|+. ++|||.++|++||.++||++++|+|||||||.-.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 46789999999985 788999 9999999999999999999999999999999753
No 113
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.38 E-value=5.7e-14 Score=129.70 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=54.4
Q ss_pred hcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHH
Q psy2181 104 KRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167 (490)
Q Consensus 104 ~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k 167 (490)
..+.+|.|+.|+.+|+.+||..|+.++||+...|++||..+||++.+|+|||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 3456778999999999999999999999999999999999999999999999999999887543
No 114
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.36 E-value=1.5e-13 Score=106.46 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=43.0
Q ss_pred CCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHH
Q psy2181 213 HNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNL 266 (490)
Q Consensus 213 ~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~k 266 (490)
+.++.||.||.+ ||..|..++||+..++++||..+||++.+|+|||||||+|.|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 457889999986 489999999999999999999999999999999999999864
No 115
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.36 E-value=7e-14 Score=109.98 Aligned_cols=49 Identities=24% Similarity=0.143 Sum_probs=45.6
Q ss_pred HHHHHHHHHHh-hhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHH
Q psy2181 116 NEQIDSLEKEF-ERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164 (490)
Q Consensus 116 ~~Ql~~LE~~F-er~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr 164 (490)
..|+.+||+.| ..++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45799999999 57999999999999999999999999999999999874
No 116
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=4.4e-13 Score=113.10 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=55.3
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcC---------------CCcceeeeeehhhHHHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIG---------------LPEARIQVSSINRVLRNLAAQKE 271 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~---------------L~e~qVqvWFqNRR~k~kk~~k~ 271 (490)
.+.++.|+.|+.+ ||+.|+.++||+..+|++||..++ |++.+|+|||||||+|+|++.+.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 5678899999986 599999999999999999999999 99999999999999999987763
No 117
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.6e-13 Score=109.78 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=49.4
Q ss_pred CCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 216 GSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 216 r~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
+.|+.||.+ ||..|..++||+..+|++||..+||++.+|+|||||||+|.|++.+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 356678875 4899999999999999999999999999999999999999998654
No 118
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.34 E-value=4.9e-13 Score=107.51 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=42.7
Q ss_pred hhhHHHH-HhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 223 RDDAKEF-ERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 223 ~eqe~~F-~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
.+||+.| +.++||+..+|++||..+||++++|+|||||||+|+|+
T Consensus 21 ~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 21 DTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp THHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 4679999 99999999999999999999999999999999999885
No 119
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.34 E-value=1.3e-13 Score=108.49 Aligned_cols=46 Identities=22% Similarity=0.070 Sum_probs=42.4
Q ss_pred ChhhHHHH-HhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 222 SRDDAKEF-ERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 222 t~eqe~~F-~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
..+||++| ..++||+..+|++||.+|||+++||+|||||||+|.|+
T Consensus 12 ~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 12 NAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 35789999 57999999999999999999999999999999999874
No 120
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.9e-13 Score=109.60 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=51.1
Q ss_pred CCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
..+.|+.||.+ ||..|..++||+..+|++||..+||++.+|+|||||||+|+||..+
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 34568999986 4899999999999999999999999999999999999999987544
No 121
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.3e-13 Score=113.20 Aligned_cols=61 Identities=18% Similarity=0.094 Sum_probs=55.5
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHc---------------------CCCcceeeeeehhhHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKI---------------------GLPEARIQVSSINRVLRNL 266 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l---------------------~L~e~qVqvWFqNRR~k~k 266 (490)
++.||.||.|+.+ ||+.|+.++||+..+|++||..+ +|+|.+|+|||||||+|+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 4678899999985 58999999999999999999999 7999999999999999999
Q ss_pred HHHHHH
Q psy2181 267 AAQKEQ 272 (490)
Q Consensus 267 k~~k~~ 272 (490)
++.+..
T Consensus 84 r~~~~~ 89 (102)
T 2da6_A 84 FRQKLA 89 (102)
T ss_dssp HHHHHH
T ss_pred HhhHhh
Confidence 877654
No 122
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=6.9e-13 Score=110.99 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=34.3
Q ss_pred CCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeee
Q psy2181 220 PISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQV 256 (490)
Q Consensus 220 ~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqv 256 (490)
.||.+ ||+.|+.++||+..+|++||..|||++++|+|
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkv 57 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDA 57 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCee
Confidence 67775 59999999999999999999999999999988
No 123
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.33 E-value=4.8e-13 Score=105.50 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=43.4
Q ss_pred hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 224 DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 224 eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
+||+.|..++||+..+|++||..+||++.+|++||||||+|+|+..
T Consensus 18 ~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 18 HLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp HHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 5699999999999999999999999999999999999999999753
No 124
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.31 E-value=3.3e-13 Score=114.15 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=51.3
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
...++.||.||.+ ||..|..++||+..+|++||..|||++.+|+|||||||+|+||.+.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 4566889999986 4899999999999999999999999999999999999999998653
No 125
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=1e-12 Score=105.42 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=52.1
Q ss_pred CCCCCCCCCCChh----hHHHHHh---hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~---n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
...++.|+.|+.+ ||..|.. ++||+..++++||..+||++.+|+|||||||+|.|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 3567889999986 4888987 99999999999999999999999999999999998754
No 126
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.30 E-value=5e-13 Score=110.72 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=51.8
Q ss_pred CCCCCCCChh----hHHHH---HhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHH
Q psy2181 215 PGSVTPISRD----DAKEF---ERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 272 (490)
Q Consensus 215 rr~rT~ft~e----qe~~F---~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~ 272 (490)
|+.|+.|+.+ |+..| ..++||+..++++||..+||++.+|++||||||.|.|+..+..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999986 48889 8899999999999999999999999999999999999866543
No 127
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.30 E-value=1e-12 Score=105.36 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=51.7
Q ss_pred CCCCCCCChh----hHHHH---HhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHH
Q psy2181 215 PGSVTPISRD----DAKEF---ERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 271 (490)
Q Consensus 215 rr~rT~ft~e----qe~~F---~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~ 271 (490)
|+.|+.|+.+ |+..| ..++||+..++++||..+||++.+|+|||||||+|.|+..+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6789999986 48889 889999999999999999999999999999999999886553
No 128
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.28 E-value=5.3e-13 Score=104.33 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=49.3
Q ss_pred CCCCCCCCChh----hHHHH---HhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 214 NPGSVTPISRD----DAKEF---ERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 214 ~rr~rT~ft~e----qe~~F---~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
.++.|+.|+.+ |+..| ..++||+..++++||..+||++.+|++||||||+|.||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46788999986 48889 88999999999999999999999999999999999875
No 129
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.27 E-value=1.4e-12 Score=100.70 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=46.5
Q ss_pred CCCCChh----hHHHHHh---hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 218 VTPISRD----DAKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 218 rT~ft~e----qe~~F~~---n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
++.|+.+ ||..|.. ++||+..++++||..+||++.+|++||||||+|.|+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 5788876 4889999 999999999999999999999999999999999886
No 130
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.27 E-value=8.8e-13 Score=104.49 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHhh---hcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHH
Q psy2181 113 SFTNEQIDSLEKEFE---RTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 168 (490)
Q Consensus 113 ~FT~~Ql~~LE~~Fe---r~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~ 168 (490)
.|+.+|+.+|+.+|. .++||+..++++||..+||++.+|++||+|||+|.++....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 599999999999999 99999999999999999999999999999999998875433
No 131
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.27 E-value=2.6e-12 Score=105.92 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=51.7
Q ss_pred CCCCCCCCCCChhh----HHHHHh---hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 212 PHNPGSVTPISRDD----AKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 212 ~~~rr~rT~ft~eq----e~~F~~---n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
...++.|+.|+.++ +..|.. ++||+..+|++||..+||++.||+|||||||.|.++...
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 45678899999864 777776 699999999999999999999999999999999987554
No 132
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.26 E-value=7.7e-13 Score=105.62 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=43.3
Q ss_pred hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 224 DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 224 eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
+||+.|..++||+..+|++||..+||++++|+|||||||+|.||.+
T Consensus 18 ~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 18 ELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 4699999999999999999999999999999999999999988744
No 133
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.26 E-value=4.7e-13 Score=127.06 Aligned_cols=62 Identities=24% Similarity=0.259 Sum_probs=53.5
Q ss_pred hhcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC---------------------CCCCceeEechhhhhh
Q psy2181 103 LKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIG---------------------LPEARIQVSSINRVLR 161 (490)
Q Consensus 103 ~~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lg---------------------Ls~~qVqvWFqNRR~k 161 (490)
..++.||.|+.|+..|+.+||+.|+.++||+...|++||..++ |++.+|++||||||++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3467788999999999999999999999999999999999999 9999999999999998
Q ss_pred HHH
Q psy2181 162 NLA 164 (490)
Q Consensus 162 ~kr 164 (490)
++.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 753
No 134
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.26 E-value=1.3e-12 Score=120.40 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=49.4
Q ss_pred CCCCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHH
Q psy2181 210 ALPHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 268 (490)
Q Consensus 210 ~~~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~ 268 (490)
...+.|+.||.||.+ ||..|..++||+..+|++||..+||++.+|+|||||||+|+||.
T Consensus 97 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 97 GLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 345788999999986 48999999999999999999999999999999999999999873
No 135
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=6.5e-13 Score=104.43 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=41.3
Q ss_pred hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 224 DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 224 eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
.||..|..++||+..+|++||.++||++++|+|||||||+|.++
T Consensus 17 ~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 17 LLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 46999999999999999999999999999999999999998764
No 136
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.2e-12 Score=106.78 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=38.7
Q ss_pred CCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHH
Q psy2181 220 PISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNL 266 (490)
Q Consensus 220 ~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~k 266 (490)
.||.+ ||..|..++||+..+|++||..+||++.+|+|||||||+|.+
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r 69 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRD 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHH
Confidence 37865 589999999999999999999999999999885544444443
No 137
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.25 E-value=9.7e-13 Score=119.57 Aligned_cols=57 Identities=21% Similarity=0.203 Sum_probs=50.1
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 268 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~ 268 (490)
.+.|+.||.||.+ ||..|..++||+..+|++||..+||++.+|+|||||||+|+||.
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4567889999986 48999999999999999999999999999999999999998874
No 138
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.23 E-value=8.6e-13 Score=112.51 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHH------------------cC---CCcceeeeeehhhHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADK------------------IG---LPEARIQVSSINRVLRNL 266 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~------------------l~---L~e~qVqvWFqNRR~k~k 266 (490)
.+.|+.||.|+.+ ||+.|+.++||+...|++||.. || |++.+|+|||||||++.+
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 4567899999986 5899999999999999999999 88 999999999999999887
Q ss_pred HHHH
Q psy2181 267 AAQK 270 (490)
Q Consensus 267 k~~k 270 (490)
++.+
T Consensus 87 ~k~~ 90 (99)
T 1lfb_A 87 FRHK 90 (99)
T ss_dssp CCC-
T ss_pred Hhch
Confidence 6554
No 139
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.22 E-value=4e-12 Score=105.49 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=49.6
Q ss_pred CCCCCCCCCChh----hHHHHHh---hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHH
Q psy2181 213 HNPGSVTPISRD----DAKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNL 266 (490)
Q Consensus 213 ~~rr~rT~ft~e----qe~~F~~---n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~k 266 (490)
..++.|+.|+.+ ||..|.. ++||+..+|++||..+||++.+|++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 456678999986 4889999 99999999999999999999999999999999976
No 140
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.22 E-value=3.1e-12 Score=116.69 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=52.0
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
.+.|+.||.|+.+ ||..|..++||+..+|++||..+||++.+|+|||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4667889999986 4899999999999999999999999999999999999999875
No 141
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.22 E-value=2.1e-12 Score=119.54 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=46.8
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
.+.|+.||.||.+ ||+.|..++||+..+|++||..+||++.+|+|||||||+|+||..+
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4677899999986 4899999999999999999999999999999999999999998554
No 142
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.21 E-value=4e-12 Score=104.68 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=47.7
Q ss_pred CCCCCCChh----hHHHHHh---hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHH
Q psy2181 216 GSVTPISRD----DAKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 268 (490)
Q Consensus 216 r~rT~ft~e----qe~~F~~---n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~ 268 (490)
+.++.|+.+ ||..|.. ++||+..++++||..+||++.+|+|||||||+|.|+.
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 456679986 4889999 9999999999999999999999999999999999874
No 143
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.18 E-value=5.6e-12 Score=115.62 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=51.8
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 267 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk 267 (490)
.+.||.||.|+.+ ||..|..++||+..+|++||..+||++.+|+|||||||+|+||
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 4567889999986 4888999999999999999999999999999999999999986
No 144
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.17 E-value=4.9e-12 Score=121.68 Aligned_cols=61 Identities=23% Similarity=0.325 Sum_probs=53.2
Q ss_pred hhhcccCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC---------------------CCCCceeEechhhhh
Q psy2181 102 RLKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIG---------------------LPEARIQVSSINRVL 160 (490)
Q Consensus 102 ~~~rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lg---------------------Ls~~qVqvWFqNRR~ 160 (490)
..+++.||.|+.|+..|+.+||+.|++++||+..+|++||+.++ |++.+|++||+|||+
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 45677889999999999999999999999999999999999987 889999999999997
Q ss_pred hH
Q psy2181 161 RN 162 (490)
Q Consensus 161 k~ 162 (490)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 64
No 145
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.16 E-value=5.4e-12 Score=116.42 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=49.4
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 270 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k 270 (490)
+..|+.||.||.+ ||..|+.++||+...|++||..+||++.+|+|||||||+|.|+...
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 4578899999986 5899999999999999999999999999999999999999887543
No 146
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.05 E-value=2.7e-11 Score=95.86 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=43.9
Q ss_pred CCChh----hHHHHH---hhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHH
Q psy2181 220 PISRD----DAKEFE---RTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 271 (490)
Q Consensus 220 ~ft~e----qe~~F~---~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~ 271 (490)
.|+.+ |+..|. .++||+..+|++||..+||++.+|++||||||.|.|+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 46654 478888 89999999999999999999999999999999999875543
No 147
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.05 E-value=7.4e-11 Score=98.44 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHHHHHHHH
Q psy2181 112 TSFTNEQIDSLEKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 169 (490)
Q Consensus 112 T~FT~~Ql~~LE~~Fer---~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~kr~~k~~ 169 (490)
..|+.+++.+|+.+|.. ++||+..+|++||+.+||++.||++||+|+|.|.++...+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 46899999999999988 89999999999999999999999999999999998765544
No 148
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=4.6e-11 Score=94.89 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhh
Q psy2181 116 NEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR 161 (490)
Q Consensus 116 ~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k 161 (490)
.+|+..|+..|..+++|+..+++.||+.+||++++|+|||+|||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999963
No 149
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.94 E-value=8.3e-11 Score=111.60 Aligned_cols=56 Identities=18% Similarity=0.136 Sum_probs=48.2
Q ss_pred CCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcC---------------------CCcceeeeeehhhHHHHH
Q psy2181 212 PHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIG---------------------LPEARIQVSSINRVLRNL 266 (490)
Q Consensus 212 ~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~---------------------L~e~qVqvWFqNRR~k~k 266 (490)
.+.||.||.|+.. ||+.|+.++||+...|++||..++ |++.+|+|||||||+|.|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 4578899999985 599999999999999999999999 999999999999999865
Q ss_pred H
Q psy2181 267 A 267 (490)
Q Consensus 267 k 267 (490)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 3
No 150
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.92 E-value=6.6e-11 Score=121.68 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=52.8
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechhhhhhHH
Q psy2181 107 LQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNL 163 (490)
Q Consensus 107 ~rR~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqNRR~k~k 163 (490)
.++.++.|+.+|+.+||+.|+.++||+..+|++||..+||+++||+|||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 344567899999999999999999999999999999999999999999999999864
No 151
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=3.5e-10 Score=89.88 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=38.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHH
Q psy2181 225 DAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLR 264 (490)
Q Consensus 225 qe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k 264 (490)
|+.+|+.|++|+.+++++||..+||++++|+|||+|||.+
T Consensus 20 Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 20 LKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5899999999999999999999999999999999999963
No 152
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.83 E-value=1.6e-09 Score=90.35 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=42.3
Q ss_pred hHHHHHh---hCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHHHHHHHH
Q psy2181 225 DAKEFER---THYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQ 272 (490)
Q Consensus 225 qe~~F~~---n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~k~~ 272 (490)
|+.-|.. ++||+..+|++||.++||++.||++||+|+|.|.++....+
T Consensus 20 L~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 20 LRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp HHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 4556666 89999999999999999999999999999999998876544
No 153
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.80 E-value=1.2e-09 Score=105.10 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCChh----hHHHHHhhCCCCHHHHHHHHHHcC---------------------CCcceeeeeehhhHHHH
Q psy2181 211 LPHNPGSVTPISRD----DAKEFERTHYPDVFARERLADKIG---------------------LPEARIQVSSINRVLRN 265 (490)
Q Consensus 211 ~~~~rr~rT~ft~e----qe~~F~~n~yp~~~~re~LA~~l~---------------------L~e~qVqvWFqNRR~k~ 265 (490)
..+.||.||.|+.+ |++.|+.++||+..+|++||..+| |++.+|++||+|||.+.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 35678899999986 589999999999999999999988 89999999999999763
No 154
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.68 E-value=2.5e-09 Score=109.89 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=44.2
Q ss_pred CCCCCCh----hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhhHHHHH
Q psy2181 217 SVTPISR----DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNL 266 (490)
Q Consensus 217 ~rT~ft~----eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNRR~k~k 266 (490)
.++.|+. +||+.|+.++||+..+|++||.++||+++||+|||||||.|.|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3455665 4599999999999999999999999999999999999998864
No 155
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.03 E-value=7e-07 Score=62.48 Aligned_cols=20 Identities=35% Similarity=0.841 Sum_probs=17.4
Q ss_pred hhhhhcchhhHHHHHHHHhh
Q psy2181 338 RQVWFSNRRAKWRREEKLRN 357 (490)
Q Consensus 338 ~~vwf~nrrak~r~~e~~~~ 357 (490)
|.||||||||||+|++....
T Consensus 3 VkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 3 IKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp TTTTTTCSHHHHTSSHHHHT
T ss_pred ceeccHHHHHHHHHHhHHHH
Confidence 67899999999999988753
No 156
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.02 E-value=4.3e-07 Score=63.55 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=19.8
Q ss_pred CceeEechhhhhhHHHHHHHHHH
Q psy2181 149 ARIQVSSINRVLRNLAAQKEQQA 171 (490)
Q Consensus 149 ~qVqvWFqNRR~k~kr~~k~~~~ 171 (490)
+||+|||||||+|+|+.......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 58999999999999998877543
No 157
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.96 E-value=0.62 Score=36.77 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=36.0
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEechh
Q psy2181 119 IDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSIN 157 (490)
Q Consensus 119 l~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFqN 157 (490)
++.|+..|...+.+....-+.|..+..|+-.+|+-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 378999999999999999999999999999999999954
No 158
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.49 E-value=2.4 Score=33.44 Aligned_cols=38 Identities=8% Similarity=-0.069 Sum_probs=34.4
Q ss_pred hhHHHHHhhCCCCHHHHHHHHHHcCCCcceeeeeehhh
Q psy2181 224 DDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261 (490)
Q Consensus 224 eqe~~F~~n~yp~~~~re~LA~~l~L~e~qVqvWFqNR 261 (490)
-|+.+|...+.+.....+.|..+..|+-.+|+-||--|
T Consensus 20 ~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 20 PLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp HHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 46888999999999999999999999999999999544
No 159
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=46.03 E-value=0.64 Score=41.96 Aligned_cols=30 Identities=3% Similarity=-0.079 Sum_probs=21.8
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhcCCCCH
Q psy2181 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDV 134 (490)
Q Consensus 105 rK~rR~RT~FT~~Ql~~LE~~Fer~~yP~~ 134 (490)
.+.+|.||.|+.+|++.|+..|+.++||+.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788999999999999999999999875
No 160
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=23.40 E-value=25 Score=25.54 Aligned_cols=44 Identities=14% Similarity=-0.010 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEech
Q psy2181 112 TSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSI 156 (490)
Q Consensus 112 T~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWFq 156 (490)
..|+.+....+...++. .........++|..+|++...|..|..
T Consensus 4 ~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 35888887766444433 232122256899999999999999954
No 161
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=22.11 E-value=34 Score=27.00 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCCcceeeeeehhhHHHHHHHH
Q psy2181 239 ARERLADKIGLPEARIQVSSINRVLRNLAAQ 269 (490)
Q Consensus 239 ~re~LA~~l~L~e~qVqvWFqNRR~k~kk~~ 269 (490)
.-+++|..+|+++..|+.+...-|.|.++..
T Consensus 55 s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 55 STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999886666555555443
No 162
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=21.47 E-value=29 Score=27.32 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=29.3
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCCCCceeEec
Q psy2181 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSS 155 (490)
Q Consensus 109 R~RT~FT~~Ql~~LE~~Fer~~yP~~~~ReeLA~~lgLs~~qVqvWF 155 (490)
+.+..|+.++...+-..++.. . ...+||+.+|++...|..|.
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 345579998866555555432 2 24578999999988888885
Done!