RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2181
(490 letters)
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 68.3 bits (167), Expect = 2e-15
Identities = 44/63 (69%), Positives = 49/63 (77%)
Query: 108 QRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQK 167
QRNRTSFT EQI++LEKEFERTHYPDVFARERLA KI LPEARIQV NR + +K
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 168 EQQ 170
+
Sbjct: 62 LRN 64
Score = 46.7 bits (111), Expect = 9e-08
Identities = 22/22 (100%), Positives = 22/22 (100%)
Query: 339 QVWFSNRRAKWRREEKLRNQRR 360
QVWFSNRRAKWRREEKLRNQRR
Sbjct: 46 QVWFSNRRAKWRREEKLRNQRR 67
Score = 45.6 bits (108), Expect = 3e-07
Identities = 31/47 (65%), Positives = 34/47 (72%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 273
KEFERTHYPDVFARERLA KI LPEARIQV NR + +K +
Sbjct: 18 KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 64
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 63.7 bits (155), Expect = 1e-13
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 105 RKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLA 164
R ++ R +T Q LEKEF Y R +A + L E ++++ NR ++
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 70
Query: 165 AQKEQQ 170
K++
Sbjct: 71 INKDRA 76
Score = 41.0 bits (96), Expect = 1e-05
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 273
KEF Y R +A + L E ++++ NR ++ K++
Sbjct: 30 KEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRA 76
Score = 38.3 bits (89), Expect = 1e-04
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 339 QVWFSNRRAKWRREEKLRNQ 358
++WF NRR K ++ K R +
Sbjct: 58 KIWFQNRRMKMKKINKDRAK 77
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 61.7 bits (150), Expect = 4e-13
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 111 RTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
R ++T Q LEKEF Y R +A + L E +I++ NR
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNR 48
Score = 40.9 bits (96), Expect = 9e-06
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
KEF Y R +A + L E +I++ NR
Sbjct: 14 KEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNR 48
Score = 35.5 bits (82), Expect = 8e-04
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 339 QVWFSNRRAKWRRE 352
++WF NRR KW++E
Sbjct: 42 KIWFQNRRMKWKKE 55
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 61.4 bits (149), Expect = 5e-13
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
R RT+F++EQ+ L++EF Y R++L+ ++GL EA+I++ N
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNA 50
Score = 37.9 bits (88), Expect = 1e-04
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+EF Y R++L+ ++GL EA+I++ N
Sbjct: 16 REFNENRYLTERRRQQLSSELGLNEAQIKIWFQNA 50
Score = 28.7 bits (64), Expect = 0.19
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 339 QVWFSNRRAK 348
++WF N RAK
Sbjct: 44 KIWFQNARAK 53
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 61.0 bits (148), Expect = 6e-13
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
+ F+N+Q LEK+FE Y R+RLA + L E +++ NR
Sbjct: 2 GGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNR 51
Score = 39.0 bits (91), Expect = 5e-05
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
K+FE Y R+RLA + L E +++ NR
Sbjct: 17 KKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNR 51
Score = 34.8 bits (80), Expect = 0.001
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 339 QVWFSNRRAKWRR 351
+ WF NRRAKWRR
Sbjct: 45 KTWFQNRRAKWRR 57
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 60.7 bits (147), Expect = 8e-13
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
+ RT+ + D+LE+ F P R+A+++ L + ++V NR
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNR 50
Score = 37.6 bits (87), Expect = 1e-04
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ F P R+A+++ L + ++V NR
Sbjct: 16 RHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNR 50
Score = 32.6 bits (74), Expect = 0.009
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 338 RQVWFSNRRAKWRR 351
+VWF NRR + +R
Sbjct: 43 VRVWFCNRRQREKR 56
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 61.0 bits (148), Expect = 9e-13
Identities = 15/65 (23%), Positives = 27/65 (41%)
Query: 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165
K R RT +Q+ +L + PD +E+L + GL I+V N+ ++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Query: 166 QKEQQ 170
+
Sbjct: 62 SIMMK 66
Score = 37.9 bits (88), Expect = 1e-04
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 339 QVWFSNRRAKWRREEKL 355
+VWF N+R K ++ +
Sbjct: 48 RVWFQNKRCKDKKRSIM 64
Score = 36.4 bits (84), Expect = 4e-04
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 273
+ PD +E+L + GL I+V N+ ++ +
Sbjct: 20 TCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIMMK 66
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 59.9 bits (145), Expect = 2e-12
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
R RT+FT +Q+ LEKEF + +Y R LA ++ LPE+ I+V NR
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNR 50
Score = 36.0 bits (83), Expect = 5e-04
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
KEF + +Y R LA ++ LPE+ I+V NR
Sbjct: 16 KEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNR 50
Score = 35.3 bits (81), Expect = 9e-04
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 339 QVWFSNRRAKWRRE 352
+VWF NRR K +R+
Sbjct: 44 KVWFQNRRMKDKRQ 57
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 58.7 bits (142), Expect = 5e-12
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
+ R ++ Q+ LE+E+ + R +++ L E +I + NR
Sbjct: 3 KKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNR 52
Score = 36.0 bits (83), Expect = 6e-04
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+E+ + R +++ L E +I + NR
Sbjct: 18 REYAANKFITKDKRRKISAATSLSERQITIWFQNR 52
Score = 35.2 bits (81), Expect = 0.001
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 339 QVWFSNRRAKWRR 351
+WF NRR K ++
Sbjct: 46 TIWFQNRRVKEKK 58
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 58.4 bits (141), Expect = 7e-12
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
+ RT FT Q+ +LE++F + Y + R + + L E ++++ NR
Sbjct: 2 KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 51
Score = 34.9 bits (80), Expect = 0.001
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 339 QVWFSNRRAKWRR 351
++WF NRRAK +R
Sbjct: 45 KIWFQNRRAKAKR 57
Score = 34.9 bits (80), Expect = 0.001
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
++F + Y + R + + L E ++++ NR
Sbjct: 17 RKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 51
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 57.6 bits (139), Expect = 1e-11
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 111 RTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
R FT+ Q +L F+ P + ++ ++GL + + +N
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNA 49
Score = 37.5 bits (87), Expect = 1e-04
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
F+ P + ++ ++GL + + +N
Sbjct: 15 AIFKENKRPSKELQITISQQLGLELSTVSNFFMNA 49
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 56.8 bits (137), Expect = 2e-11
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 111 RTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
++S + + LE+ F R + +E +A K G+ +++V IN+
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINK 48
Score = 37.9 bits (88), Expect = 9e-05
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ F R + +E +A K G+ +++V IN+
Sbjct: 14 QVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINK 48
Score = 29.9 bits (67), Expect = 0.075
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 339 QVWFSNRRAKWR 350
+VWF N+R + +
Sbjct: 42 RVWFINKRMRSK 53
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 57.2 bits (138), Expect = 2e-11
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 103 LKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRN 162
++R + R F+ Q+ LE+ F++ Y RE LA I L ++++ N +
Sbjct: 1 MRR---KRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 57
Query: 163 LAAQKEQQA 171
K++ A
Sbjct: 58 KRQAKDKAA 66
Score = 36.8 bits (85), Expect = 4e-04
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 339 QVWFSNRRAKWRREEKLRNQRR 360
++WF N R K +R+ K + ++
Sbjct: 47 KIWFQNHRYKMKRQAKDKAAQQ 68
Score = 34.1 bits (78), Expect = 0.003
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQA 274
+ F++ Y RE LA I L ++++ N + K++ A
Sbjct: 19 RRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAA 66
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 56.8 bits (137), Expect = 2e-11
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 106 KLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
K +R+RT+F+ Q+D LE+ FERT YPD++ RE LA + L EARIQV NR
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNR 53
Score = 35.3 bits (81), Expect = 0.001
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 339 QVWFSNRRAKWRREEK 354
QVWF NRRA+ R++
Sbjct: 47 QVWFQNRRARLRKQHT 62
Score = 34.1 bits (78), Expect = 0.003
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ FERT YPD++ RE LA + L EARIQV NR
Sbjct: 19 RAFERTQYPDIYTREELAQRTNLTEARIQVWFQNR 53
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 55.7 bits (134), Expect = 5e-11
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 168
R RT FT++Q+ LE F+R YPD+ RE +A L EAR++V NR A ++
Sbjct: 3 RQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR----RAKWRK 58
Query: 169 QQ 170
++
Sbjct: 59 RE 60
Score = 35.7 bits (82), Expect = 8e-04
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 339 QVWFSNRRAKWRREE 353
+VWF NRRAKWR+ E
Sbjct: 46 RVWFKNRRAKWRKRE 60
Score = 33.0 bits (75), Expect = 0.007
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 273
F+R YPD+ RE +A L EAR++V NR A ++++
Sbjct: 18 ATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR----RAKWRKRE 60
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 55.4 bits (133), Expect = 8e-11
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 103 LKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
L + +R RTS N SLE F + P + +A+++GL + ++V NR
Sbjct: 4 LVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNR 59
Score = 31.5 bits (71), Expect = 0.026
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 338 RQVWFSNRRAKWRR 351
+VWF NRR K +R
Sbjct: 52 VRVWFCNRRQKGKR 65
Score = 31.5 bits (71), Expect = 0.027
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
F + P + +A+++GL + ++V NR
Sbjct: 25 TMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNR 59
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 55.4 bits (133), Expect = 1e-10
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 103 LKRKLQRNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRN 162
L K ++ R FT Q LE+ F + Y RE LA I L ++++ N +
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKT 64
Query: 163 LAAQKEQQASAH 174
AQ E+ H
Sbjct: 65 KRAQNEKGYEGH 76
Score = 33.1 bits (75), Expect = 0.010
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 336 SARQVWFSNRRAKWRREEK 354
+ ++WF N R K +R +
Sbjct: 51 TQVKIWFQNHRYKTKRAQN 69
Score = 32.7 bits (74), Expect = 0.012
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASAH 277
+ F + Y RE LA I L ++++ N + AQ E+ H
Sbjct: 26 RRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGH 76
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 54.6 bits (131), Expect = 1e-10
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 111 RTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
RTS +LEK F P +A+++ + + I+V NR
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNR 49
Score = 34.9 bits (80), Expect = 0.001
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
K F P +A+++ + + I+V NR
Sbjct: 15 KSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNR 49
Score = 28.4 bits (63), Expect = 0.23
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 338 RQVWFSNRRAKWRR 351
+VWFSNRR K +R
Sbjct: 42 IRVWFSNRRQKEKR 55
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 55.1 bits (132), Expect = 2e-10
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 158
+R ++ E + +E F YPD RE +A+ + +
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDL 51
Score = 37.3 bits (86), Expect = 3e-04
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 310 AHLALPHNPGSVTPISRDDAKGLVQQSARQVWFSNRRAKWRREEKL 355
+A N P + V WF+NRR + +R +
Sbjct: 31 EEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 76
Score = 33.5 bits (76), Expect = 0.008
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
F YPD RE +A+ + +
Sbjct: 17 SYFNENQYPDEAKREEIANACNAVIQKPGKKLSDL 51
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 54.2 bits (130), Expect = 3e-10
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 168
R RT+FT+ QI LE+ F + Y L+ K+ L A++++ NR R+ +
Sbjct: 3 RTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 62
Query: 169 QQ 170
+
Sbjct: 63 HK 64
Score = 34.5 bits (79), Expect = 0.002
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 339 QVWFSNRRAKWRREEK 354
++WF NRR + + +
Sbjct: 46 KIWFKNRRRRHKIQSD 61
Score = 31.8 bits (72), Expect = 0.018
Identities = 9/47 (19%), Positives = 20/47 (42%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQ 273
+ F + Y L+ K+ L A++++ NR R+ + +
Sbjct: 18 QHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHK 64
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 53.1 bits (127), Expect = 7e-10
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 109 RNRTSFTNEQIDSLEKEFERT-HYPDVFARERLADKIGLPEARIQVSSINR 158
+ T +Q++ LE F + +PD +A + GL E + Q R
Sbjct: 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQR 53
Score = 37.7 bits (87), Expect = 2e-04
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 338 RQVWFSNRRAKWRREEKLRNQRRGST 363
Q WF R A+WRR E L ++ R T
Sbjct: 46 TQKWFKQRLAEWRRSEGLPSECRSVT 71
Score = 31.9 bits (72), Expect = 0.019
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 227 KEFERT-HYPDVFARERLADKIGLPEARIQVSSINR 261
F + +PD +A + GL E + Q R
Sbjct: 18 YNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQR 53
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 52.7 bits (126), Expect = 1e-09
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 109 RNRTSFTNEQIDSLEKEFE---RTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAA 165
R R +F + + L + F YP A+E LA K G+ +++ N+ +R
Sbjct: 3 RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62
Query: 166 QKEQQASA 173
+ Q A
Sbjct: 63 IGKFQEEA 70
Score = 38.8 bits (90), Expect = 9e-05
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 223 RDDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKEQQASA 276
+ YP A+E LA K G+ +++ N+ +R + Q A
Sbjct: 17 NEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEA 70
Score = 32.2 bits (73), Expect = 0.014
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 339 QVWFSNRRAKWRREEKLRNQR 359
WF N+R ++++ +
Sbjct: 49 SNWFGNKRIRYKKNIGKFQEE 69
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 52.3 bits (125), Expect = 2e-09
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 168
RT+FT Q+ LEKEF Y R +A + L E ++++ NR ++ ++E
Sbjct: 29 GLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 88
Score = 36.1 bits (83), Expect = 0.001
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 339 QVWFSNRRAKWRREEK 354
++WF NRR K ++ E+
Sbjct: 72 KIWFQNRRMKQKKRER 87
Score = 31.5 bits (71), Expect = 0.046
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 228 EFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 271
EF Y R +A + L E ++++ NR ++ ++E
Sbjct: 45 EFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 88
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 51.3 bits (123), Expect = 3e-09
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 109 RNRTSFTNEQIDSLEKEFERTH---YPDVFARERLADKIGLPEARIQVSSINR 158
R + + + YP ++++A + L ++ IN
Sbjct: 4 NKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINA 56
Score = 36.6 bits (85), Expect = 3e-04
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 215 PGSVTPISRDDAKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
P T + R + YP ++++A + L ++ IN
Sbjct: 10 PKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINA 56
Score = 25.5 bits (56), Expect = 3.5
Identities = 4/10 (40%), Positives = 5/10 (50%)
Query: 339 QVWFSNRRAK 348
WF N R +
Sbjct: 50 NNWFINARRR 59
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 50.1 bits (120), Expect = 4e-09
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 109 RNRTSFTNEQIDSLEKEFER-THYPDVFARERLADKIGLPEARIQVSSINRVLR 161
++ E D+LEK F T YPD + L+ ++ +IQ +R +
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQ 56
Score = 38.2 bits (89), Expect = 1e-04
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 227 KEFER-THYPDVFARERLADKIGLPEARIQVSSINRVLR 264
K F T YPD + L+ ++ +IQ +R +
Sbjct: 18 KVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQ 56
Score = 29.0 bits (65), Expect = 0.18
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 339 QVWFSNRRAKWR 350
Q WF +RR + +
Sbjct: 47 QCWFRHRRNQDK 58
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 50.2 bits (120), Expect = 5e-09
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 114 FTNEQIDSLEKEFE---RTHYPDVFARERLADKIGLPEARIQVSSINR 158
FT E + LE F Y D E L L +I+ NR
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNR 52
Score = 36.3 bits (84), Expect = 4e-04
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 227 KEFE---RTHYPDVFARERLADKIGLPEARIQVSSINR 261
F Y D E L L +I+ NR
Sbjct: 15 SWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNR 52
Score = 29.8 bits (67), Expect = 0.089
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 339 QVWFSNRRAKWRR 351
+ W SNRR K +
Sbjct: 46 KNWVSNRRRKEKT 58
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 48.2 bits (115), Expect = 2e-08
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 115 TNEQIDSLEKEF-ERTHYPDVFARERLADKIGLPEARIQVSSINR 158
T + LEK F T +PD E L+ ++ IQ R
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQR 45
Score = 38.2 bits (89), Expect = 8e-05
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 227 KEF-ERTHYPDVFARERLADKIGLPEARIQVSSINR 261
K F T +PD E L+ ++ IQ R
Sbjct: 10 KVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQR 45
Score = 31.6 bits (72), Expect = 0.018
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 339 QVWFSNRRAKWRR 351
Q WF RR + +
Sbjct: 39 QRWFRQRRNQEKP 51
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 45.9 bits (108), Expect = 2e-07
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 111 RTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRV 159
R + L + +ER P RE L ++ E + S ++
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQA 49
Score = 34.0 bits (77), Expect = 0.004
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 326 RDDAKGLVQQSARQVWFSNRRAKWRREEK 354
+ LV + WF+NRR + K
Sbjct: 50 QGLGSNLVTEVRVYNWFANRRKEEAFRHK 78
Score = 30.1 bits (67), Expect = 0.095
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINRV 262
+ +ER P RE L ++ E + S ++
Sbjct: 14 QAYERQKNPSKEERETLVEECNRAECIQRGVSPSQA 49
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 46.2 bits (109), Expect = 3e-07
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 91 SSADEDSQMRLRLKRKLQRNRTSFTNEQIDSLEKEFER----THYPDVFARERLADKIGL 146
SS S +R RT FT EQ + + ER D A E+ + G+
Sbjct: 2 SSGSSGSNPSSSGGTT-KRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGV 60
Query: 147 PEARIQVSSINR 158
+++ N
Sbjct: 61 RRQVLKIWMHNN 72
Score = 36.9 bits (85), Expect = 4e-04
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 227 KEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ R D A E+ + G+ +++ N
Sbjct: 38 RLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNN 72
Score = 26.5 bits (58), Expect = 2.2
Identities = 2/14 (14%), Positives = 5/14 (35%)
Query: 339 QVWFSNRRAKWRRE 352
++W N +
Sbjct: 66 KIWMHNNKNSGPSS 79
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 45.1 bits (106), Expect = 4e-07
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 109 RNRTSFTNEQIDSLEKEFERT-HYPDVFARERLADKIGLPEARIQVSSINR 158
R+RT + E + L+ YPD A L+ ++ LP+ I N+
Sbjct: 9 RSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQ 59
Score = 29.3 bits (65), Expect = 0.17
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 338 RQVWFSNRRAKWRREEK 354
+F N+R +
Sbjct: 52 IIKFFQNQRYHVKHSGP 68
Score = 28.9 bits (64), Expect = 0.26
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 226 AKEFERTHYPDVFARERLADKIGLPEARIQVSSINR 261
+ + YPD A L+ ++ LP+ I N+
Sbjct: 24 SFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQ 59
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 42.0 bits (98), Expect = 7e-06
Identities = 11/70 (15%), Positives = 21/70 (30%)
Query: 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 168
+ T EQ+ L+ F + RL + L I + +++
Sbjct: 6 QKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 65
Query: 169 QQASAHNQTS 178
+ N S
Sbjct: 66 MEIDESNAGS 75
Score = 33.2 bits (75), Expect = 0.009
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 338 RQVWFSNRRAKWRREEKLRNQRRGSTGS 365
WF+ ++ +E+ + GS
Sbjct: 48 IDAWFTEKKKSKALKEEKMEIDESNAGS 75
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 65
Score = 40.8 bits (96), Expect = 1e-05
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 128 RTHYPDVFA---RERL-ADKIGLPEARIQVSSINRVLRNLAAQKEQ 169
+ P +FA R+RL ++ + + VSSINRVLRNLA++K+Q
Sbjct: 20 KQECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQ 65
Score = 40.8 bits (96), Expect = 1e-05
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 231 RTHYPDVFA---RERL-ADKIGLPEARIQVSSINRVLRNLAAQKEQ 272
+ P +FA R+RL ++ + + VSSINRVLRNLA++K+Q
Sbjct: 20 KQECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQ 65
Score = 34.2 bits (79), Expect = 0.002
Identities = 14/17 (82%), Positives = 17/17 (100%)
Query: 3 VSSINRVLRNLAAQKEQ 19
VSSINRVLRNLA++K+Q
Sbjct: 49 VSSINRVLRNLASEKQQ 65
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 35.9 bits (82), Expect = 0.001
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 109 RNRTSFTNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVSSINRVLRNLAAQKE 168
+ T EQ+ L+ F + + ++L GLP I + A K
Sbjct: 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDT----RYALKH 60
Query: 169 QQASAHNQTSE 179
Q +
Sbjct: 61 GQLKWFRDNAS 71
Score = 27.8 bits (61), Expect = 0.63
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 338 RQVWFSNRRAKWRREEKLRNQRRGSTG 364
WF + R + +L+ R ++G
Sbjct: 47 IIQWFGDTRYALKH-GQLKWFRDNASG 72
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 32.3 bits (74), Expect = 0.010
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 128 RTHYPDVFA---RERL-ADKIGLPEARIQVSSINRVLRN 162
+ P +FA R+RL A+++ + VSSINR++R
Sbjct: 22 KRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRT 60
Score = 32.3 bits (74), Expect = 0.010
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 231 RTHYPDVFA---RERL-ADKIGLPEARIQVSSINRVLRN 265
+ P +FA R+RL A+++ + VSSINR++R
Sbjct: 22 KRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRT 60
Score = 26.5 bits (59), Expect = 1.5
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 3 VSSINRVLRN 12
VSSINR++R
Sbjct: 51 VSSINRIIRT 60
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 127
Score = 28.9 bits (65), Expect = 0.52
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 224 DDAKEFERTHYPDVFARERLADKIGLPEARIQVS-SINRV--LRNLAAQKEQQASAHNQT 280
+A + VF R I E RI + + + + ++ +
Sbjct: 39 ANASNKAGEKFNRVFIMYRYIVHIDSTERRIDMREFAKQAEKIFPGMVKYIEETNVV--- 95
Query: 281 SETVYDKLRM 290
+ DK+R+
Sbjct: 96 --LIGDKVRV 103
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 28.3 bits (62), Expect = 1.6
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 97 SQMRLRLKRKLQRNRTSFTNEQIDSLEKEF 126
S+++ + +L R T FT +++ K F
Sbjct: 3 SKLKPEVVEELTRK-TYFTEKEVQQWYKGF 31
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 27.2 bits (60), Expect = 2.1
Identities = 14/98 (14%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 74 DDAKEHESTSDINSEPNSSADEDSQMRLRLK-------RKLQRNRTSFTNEQIDSLEKEF 126
+ A + I+ + S S++ R + + ++ +I++ +E+
Sbjct: 27 EMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEY 86
Query: 127 ERTHYPDVFARE----RLADKIGLPEARIQVSSINRVL 160
+ P +F+ E + + + VS+I+R++
Sbjct: 87 -KRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLV 123
Score = 26.8 bits (59), Expect = 2.8
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 231 RTHYPDVFARE----RLADKIGLPEARIQVSSINRVL 263
+ P +F+ E + + + VS+I+R++
Sbjct: 87 KRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLV 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.125 0.376
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,815,882
Number of extensions: 84279
Number of successful extensions: 374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 107
Length of query: 490
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 401
Effective length of database: 1,185,626
Effective search space: 475436026
Effective search space used: 475436026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.1 bits)