Query psy2182
Match_columns 67
No_of_seqs 104 out of 219
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 18:22:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pdn_C Protein (PRD paired); p 98.4 2.9E-07 9.8E-12 54.8 4.8 58 2-59 52-109 (128)
2 1k78_A Paired box protein PAX5 98.4 8.2E-07 2.8E-11 55.5 6.8 60 2-61 67-126 (149)
3 2k27_A Paired box protein PAX- 98.4 8.9E-07 3E-11 56.1 5.8 61 2-62 60-120 (159)
4 1ic8_A Hepatocyte nuclear fact 97.3 0.00011 3.7E-09 50.1 2.0 34 27-60 13-46 (194)
5 2pjp_A Selenocysteine-specific 95.8 0.0015 5.1E-08 40.3 -0.0 51 3-53 40-90 (121)
6 2h8r_A Hepatocyte nuclear fact 95.5 0.0055 1.9E-07 42.7 1.8 34 27-60 14-47 (221)
7 1u78_A TC3 transposase, transp 94.3 0.022 7.6E-07 34.0 2.1 47 2-53 41-87 (141)
8 3hot_A Transposable element ma 93.4 0.11 3.7E-06 35.4 4.5 47 2-53 48-96 (345)
9 2zko_A NS1, NS1A, non-structur 88.9 0.15 5.3E-06 30.0 1.3 19 43-61 15-33 (73)
10 3eu6_A NS1, nonstructural prot 78.4 0.68 2.3E-05 31.9 1.0 19 43-61 12-30 (215)
11 1b4a_A Arginine repressor; hel 75.1 3.7 0.00013 26.4 3.8 31 29-59 5-35 (149)
12 4dzt_A Aqualysin-1, aqualysin- 68.3 4.1 0.00014 27.3 3.0 35 23-57 221-255 (276)
13 1sh7_A Extracellular subtilisi 68.0 4.1 0.00014 27.8 3.0 35 23-57 219-253 (284)
14 3f5t_A NS1, nonstructural prot 68.0 1.7 5.9E-05 29.8 1.0 19 43-61 12-30 (215)
15 1r0r_E Subtilisin carlsberg; h 67.2 4.3 0.00015 27.3 2.9 35 23-57 219-253 (274)
16 2b6n_A Proteinase K; S binding 66.0 4.8 0.00016 27.2 3.0 35 23-57 223-257 (278)
17 1gci_A Subtilisin; hydrolase, 64.9 5.1 0.00018 27.0 3.0 35 23-57 214-248 (269)
18 2dhy_A CUE domain-containing p 62.8 11 0.00037 21.4 3.7 40 18-57 3-45 (67)
19 1to2_E Subtilisin BPN'; serine 62.5 5.5 0.00019 26.9 2.7 34 23-56 220-253 (281)
20 3hjr_A Extracellular serine pr 61.7 5.8 0.0002 29.4 2.9 34 23-56 335-368 (600)
21 2ixt_A 36KDA protease; serine 61.5 6.3 0.00022 26.7 2.9 34 23-56 249-282 (310)
22 2iy9_A SUBA; toxin, shiga, pla 60.8 6.6 0.00023 27.0 3.0 35 23-57 271-305 (347)
23 1y9z_A Alkaline serine proteas 54.6 9.4 0.00032 27.4 3.0 34 23-56 368-401 (441)
24 1p8j_A Furin precursor; prohor 52.6 10 0.00036 27.4 3.0 36 23-58 260-295 (471)
25 2dk8_A DNA-directed RNA polyme 52.4 24 0.00081 20.7 4.0 38 16-53 1-39 (81)
26 2x8j_A Intracellular subtilisi 52.2 17 0.00057 25.1 3.9 34 23-56 249-287 (327)
27 2id4_A Kexin; KEX2, kexin, fur 48.6 13 0.00044 27.3 3.0 36 23-58 271-306 (503)
28 1qgp_A Protein (double strande 46.8 18 0.00062 20.2 2.8 29 25-53 10-41 (77)
29 2qtw_B Proprotein convertase s 46.0 14 0.00049 28.3 2.9 35 23-57 233-267 (546)
30 3dfg_A Xcrecx, regulatory prot 40.9 26 0.0009 22.1 3.2 42 17-59 6-47 (162)
31 2oxa_A Extracellular serine pr 40.4 20 0.00069 26.8 2.9 35 24-58 336-370 (600)
32 2p5k_A Arginine repressor; DNA 40.2 37 0.0013 17.1 4.5 28 31-58 7-34 (64)
33 3lpc_A APRB2; protease, subtil 40.1 33 0.0011 23.3 3.8 35 24-58 276-314 (340)
34 1f8v_D Mature capsid protein g 38.9 18 0.00062 19.0 1.8 20 46-65 3-22 (40)
35 3afg_A Subtilisin-like serine 38.7 23 0.00077 26.5 3.0 35 23-57 358-392 (539)
36 3mtw_A L-arginine carboxypepti 38.3 7.1 0.00024 24.5 0.1 16 2-17 354-369 (403)
37 4h6x_A Thiazoline oxidase/subt 37.2 25 0.00084 24.5 2.8 33 24-56 274-310 (357)
38 1xmk_A Double-stranded RNA-spe 35.6 58 0.002 18.6 3.9 27 27-53 9-35 (79)
39 1qbj_A Protein (double-strande 35.0 34 0.0011 19.5 2.7 27 27-53 8-37 (81)
40 3vta_A Cucumisin; subtilisin-l 34.0 30 0.001 26.2 3.0 33 24-56 415-447 (621)
41 3mkv_A Putative amidohydrolase 33.7 10 0.00035 23.8 0.3 16 2-17 361-376 (426)
42 1r8d_A Transcription activator 33.2 49 0.0017 19.2 3.3 50 4-55 19-71 (109)
43 2pwa_A Proteinase K; structure 32.6 17 0.00057 24.6 1.3 34 23-57 223-256 (279)
44 2rnn_A E3 SUMO-protein ligase 31.1 97 0.0033 19.3 5.9 54 1-61 4-57 (114)
45 1r6v_A Subtilisin-like serine 30.7 35 0.0012 26.6 3.0 35 23-57 380-414 (671)
46 1xdp_A Polyphosphate kinase; P 30.6 6.9 0.00024 30.7 -1.0 39 20-59 69-107 (687)
47 4h6w_A N-terminal cyanobactin 29.9 68 0.0023 21.3 4.0 34 24-57 224-261 (306)
48 3f7m_A Alkaline serine proteas 29.8 23 0.00077 23.6 1.6 33 23-56 224-256 (279)
49 3gp4_A Transcriptional regulat 29.5 76 0.0026 19.5 3.9 49 4-54 19-70 (142)
50 3gpv_A Transcriptional regulat 29.4 78 0.0027 19.5 4.0 49 4-54 33-84 (148)
51 4b1v_M Phosphatase and actin r 29.3 24 0.00083 17.6 1.2 12 50-61 18-29 (32)
52 2dg6_A Putative transcriptiona 28.3 49 0.0017 22.2 3.1 52 4-55 17-70 (222)
53 2ga1_A Protein of unknown func 28.2 96 0.0033 18.7 4.1 43 12-54 35-87 (106)
54 2xuv_A HDEB, 10K-L protein; un 27.9 19 0.00065 21.0 0.8 26 30-55 50-75 (79)
55 3v4g_A Arginine repressor; vib 27.7 1E+02 0.0035 20.4 4.5 35 25-59 29-63 (180)
56 1q06_A Transcriptional regulat 27.3 66 0.0023 19.5 3.3 49 4-54 17-68 (135)
57 3lap_A Arginine repressor; arg 26.9 81 0.0028 20.5 3.8 30 30-59 21-50 (170)
58 3hh0_A Transcriptional regulat 25.5 71 0.0024 19.7 3.3 50 4-55 21-73 (146)
59 2v9v_A Selenocysteine-specific 25.4 1E+02 0.0035 17.8 3.9 27 28-54 69-98 (135)
60 3t41_A Epidermin leader peptid 24.8 41 0.0014 24.0 2.2 36 23-58 406-442 (471)
61 1lva_A Selenocysteine-specific 24.8 84 0.0029 20.9 3.7 26 27-53 201-226 (258)
62 1g1e_B SIN3A; four-helix bundl 24.8 7.9 0.00027 22.8 -1.3 42 2-44 36-78 (89)
63 1h1j_S THO1 protein; SAP domai 24.5 68 0.0023 17.1 2.6 20 43-62 7-26 (51)
64 2wp4_A Molybdopterin-convertin 24.5 14 0.00047 23.7 -0.3 36 7-42 88-129 (147)
65 1rm6_C 4-hydroxybenzoyl-COA re 24.3 81 0.0028 20.0 3.4 32 28-60 105-136 (161)
66 1zrj_A E1B-55KDA-associated pr 23.9 73 0.0025 16.9 2.7 19 43-61 12-30 (50)
67 3i6s_A Subtilisin-like proteas 23.4 56 0.0019 25.1 2.9 34 24-57 426-459 (649)
68 2o8r_A Polyphosphate kinase; s 23.3 20 0.00069 28.4 0.4 54 6-59 62-116 (705)
69 2z30_A TK-subtilisin; thermoco 23.3 24 0.00081 24.1 0.7 35 23-57 245-292 (320)
70 2i9s_A MESD, mesoderm developm 22.7 53 0.0018 20.0 2.1 20 42-61 67-86 (97)
71 2j0p_A HEMS, hemin transport p 22.5 51 0.0018 23.8 2.4 27 27-53 2-28 (345)
72 2q5w_E Molybdopterin-convertin 22.2 16 0.00056 23.4 -0.3 36 7-42 80-121 (149)
73 3bbn_R Ribosomal protein S18; 21.9 38 0.0013 20.9 1.4 22 3-24 35-57 (103)
74 3ofh_A LDLR chaperone MESD; mo 21.9 40 0.0014 20.3 1.5 18 43-60 61-78 (89)
75 1fm0_E Molybdopterin convertin 21.8 16 0.00056 23.4 -0.3 36 7-42 82-123 (150)
76 1thm_A Thermitase; hydrolase(s 21.7 65 0.0022 21.4 2.6 33 23-57 224-256 (279)
77 2kvu_A MKL/myocardin-like prot 21.2 87 0.003 18.2 2.8 19 43-61 28-46 (75)
78 1nov_D Nodamura virus coat pro 21.1 23 0.00079 18.9 0.2 20 46-65 3-22 (44)
79 2omd_A Molybdopterin-convertin 20.8 16 0.00056 23.5 -0.5 36 7-42 86-127 (154)
80 2ahq_A Sigma-54, RNA polymeras 20.6 1.2E+02 0.0042 17.2 3.4 35 25-59 16-53 (76)
81 2jml_A DNA binding domain/tran 20.3 1.2E+02 0.004 16.5 3.9 53 4-57 22-78 (81)
82 2z2q_B Coat protein gamma; wil 20.3 29 0.001 18.5 0.5 20 46-65 3-22 (44)
No 1
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=98.44 E-value=2.9e-07 Score=54.76 Aligned_cols=58 Identities=53% Similarity=1.020 Sum_probs=50.8
Q ss_pred cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcC
Q psy2182 2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVC 59 (67)
Q Consensus 2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc 59 (67)
+.+.+|.++|...|..-+|.+|+..+++..+.|.++..++|+.+.+||.+.|.+.|++
T Consensus 52 ~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~ 109 (128)
T 1pdn_C 52 KILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVC 109 (128)
T ss_dssp HHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSS
T ss_pred HHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCc
Confidence 3578899999999888777677777888999999999999999999999999988874
No 2
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=98.42 E-value=8.2e-07 Score=55.48 Aligned_cols=60 Identities=70% Similarity=1.113 Sum_probs=52.2
Q ss_pred cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCC
Q psy2182 2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNN 61 (67)
Q Consensus 2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~ 61 (67)
+.+.+|.++|.+.|..-+|.+|+..+++..+.|.++..++|..++|||.++|.++++|..
T Consensus 67 rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~ 126 (149)
T 1k78_A 67 KILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDN 126 (149)
T ss_dssp HHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhccccc
Confidence 357899999999998888876777889999999999999999999999999999876654
No 3
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=98.36 E-value=8.9e-07 Score=56.11 Aligned_cols=61 Identities=70% Similarity=1.159 Sum_probs=52.2
Q ss_pred cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCCC
Q psy2182 2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNND 62 (67)
Q Consensus 2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~~ 62 (67)
+.+.+|.++|.+.|..-+|.+|+..+++..+.|.++..++|+.+.|||.++|.++++|...
T Consensus 60 rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~ 120 (159)
T 2k27_A 60 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120 (159)
T ss_dssp HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTT
T ss_pred HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccC
Confidence 4578999999999988788667777888899999999999999999999999998876543
No 4
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=97.25 E-value=0.00011 Score=50.11 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCC
Q psy2182 27 TNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCN 60 (67)
Q Consensus 27 t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~ 60 (67)
.++|+.+|++|++++|.+|+|+|++.|.+.|++.
T Consensus 13 ~~~~~~~ie~~~~e~p~~l~~~Ik~~l~~~gitQ 46 (194)
T 1ic8_A 13 AAHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQ 46 (194)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCH
T ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHHcCCCH
Confidence 3579999999999999999999999999999863
No 5
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=95.81 E-value=0.0015 Score=40.27 Aligned_cols=51 Identities=24% Similarity=0.210 Sum_probs=47.0
Q ss_pred ccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHH
Q psy2182 3 SEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRL 53 (67)
Q Consensus 3 ~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L 53 (67)
+|..+.++|.+.|-.-|..-.+.+..++++.|.++-++++.+++.|.||.|
T Consensus 40 ~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~l 90 (121)
T 2pjp_A 40 TLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRL 90 (121)
T ss_dssp HHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHH
T ss_pred HHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHHHHHCCCccHHHHHHHH
Confidence 577889999999988888888888999999999999999999999999998
No 6
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=95.45 E-value=0.0055 Score=42.75 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCC
Q psy2182 27 TNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCN 60 (67)
Q Consensus 27 t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~ 60 (67)
.++++..|.+|.+++|.+|+|+||+.|...|++.
T Consensus 14 ~~~~~~~Ve~l~~~~~~~~~~~Ik~~r~~~gltQ 47 (221)
T 2h8r_A 14 AAEQRAEVDRMLSEDPWRAAKMIKGYMQQHNIPQ 47 (221)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTCCH
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCH
Confidence 3578999999999999999999999999999874
No 7
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=94.28 E-value=0.022 Score=34.03 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=35.0
Q ss_pred cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHH
Q psy2182 2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRL 53 (67)
Q Consensus 2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L 53 (67)
+.+.+|.+.|...+ .| +|+..+++....|.++ .++|...+.||.+.|
T Consensus 41 r~~~~~~~~g~~~~---~g-r~~~l~~~~~~~i~~~-~~~~~~s~~~i~~~l 87 (141)
T 1u78_A 41 VYLKDPVSYGTSKR---AP-RRKALSVRDERNVIRA-ASNSCKTARDIRNEL 87 (141)
T ss_dssp HHHHSGGGTTCCCC---CC-CCCSSCHHHHHHHHHH-HHHCCCCHHHHHHHT
T ss_pred HHHHcccccCCcCC---CC-CCCcCCHHHHHHHHHH-HhCCCCCHHHHHHHH
Confidence 35678888886654 23 4556678888888888 677999999998887
No 8
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=93.45 E-value=0.11 Score=35.38 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=34.4
Q ss_pred cccchhhhcc--cccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHH
Q psy2182 2 YSEEGYYETG--SIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRL 53 (67)
Q Consensus 2 ~~L~Ry~eTG--si~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L 53 (67)
+++.||.+ | ++.+.+-+| +|+..++ +.|.++..++|..++.||.+.|
T Consensus 48 ~w~~r~~~-g~~~l~~~~r~g-rp~~~~~---~~i~~~v~~~~~~t~~~ia~~l 96 (345)
T 3hot_A 48 RWFQRFKS-GDFDVDDKEHGK-PPKRYED---AELQALLDEDDAQTQKQLAEQL 96 (345)
T ss_dssp HHHHHHTT-CCCCCSCCCCCC-CCCSSCH---HHHHHHHHHCSCCCHHHHHHHT
T ss_pred HHHHHHhC-CCccccCCCCCC-CCCcccH---HHHHHHHHhCccchHHHHHHHH
Confidence 35678886 6 578888888 5555554 4455566789999999998877
No 9
>2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A 3m8a_A
Probab=88.86 E-value=0.15 Score=30.01 Aligned_cols=19 Identities=21% Similarity=0.627 Sum_probs=17.2
Q ss_pred CccHHHHHHHHHhcCcCCC
Q psy2182 43 SIFAWEIRDRLLAEGVCNN 61 (67)
Q Consensus 43 ~ifawEiR~~L~~~Gvc~~ 61 (67)
++|+|-+|.+++.+++++.
T Consensus 15 dcflWHvrkrfadq~lgDA 33 (73)
T 2zko_A 15 DCFLWHVRKRVADQELGDA 33 (73)
T ss_dssp HHHHHHHHHHHHHTTCCCH
T ss_pred eehhHHHHHHhhhcccccc
Confidence 5899999999999999874
No 10
>3eu6_A NS1, nonstructural protein 1; H5N1, cytoplasm, HOST-virus interaction, interferon antiviral system evasion, nucleus, RNA-binding; 2.70A {Influenza virus} PDB: 3f5t_A
Probab=78.37 E-value=0.68 Score=31.91 Aligned_cols=19 Identities=21% Similarity=0.630 Sum_probs=17.2
Q ss_pred CccHHHHHHHHHhcCcCCC
Q psy2182 43 SIFAWEIRDRLLAEGVCNN 61 (67)
Q Consensus 43 ~ifawEiR~~L~~~Gvc~~ 61 (67)
++|+|-||.+++.+|+++.
T Consensus 12 dCfLWHiRkrfad~~lgDA 30 (215)
T 3eu6_A 12 DCFLWHVRKRFADQELGDA 30 (215)
T ss_dssp HHHHHHHHHHHHHHSCCCH
T ss_pred ehhhHHHHHHHhhcccccc
Confidence 5899999999999999874
No 11
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=75.07 E-value=3.7 Score=26.37 Aligned_cols=31 Identities=23% Similarity=0.059 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhCCCccHHHHHHHHHhcCcC
Q psy2182 29 GVVTKIADYKRECPSIFAWEIRDRLLAEGVC 59 (67)
Q Consensus 29 ~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc 59 (67)
+-.+.|.++-++++..+..||.+.|.++|+-
T Consensus 5 ~R~~~I~~li~~~~~~tq~eL~~~L~~~G~~ 35 (149)
T 1b4a_A 5 QRHIKIREIIMSNDIETQDELVDRLREAGFN 35 (149)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHHHcCCC
Confidence 3456899999999999999999999999983
No 12
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}
Probab=68.31 E-value=4.1 Score=27.30 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=30.2
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
.+.++|-|.-.+.-+++.+|++...|||+.|+.-.
T Consensus 221 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA 255 (276)
T 4dzt_A 221 TSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhC
Confidence 45678888888888899999999999999998754
No 13
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Probab=68.01 E-value=4.1 Score=27.77 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=30.0
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
-+.++|-|.-.+.-+++.+|++...|||+.|..-.
T Consensus 219 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA 253 (284)
T 1sh7_A 219 TSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRA 253 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhC
Confidence 35678888888888899999999999999998744
No 14
>3f5t_A NS1, nonstructural protein 1; H5N1, HOST-virus interaction, interferon ANT system evasion, nucleus, RNA-binding; 2.70A {Influenza virus}
Probab=68.00 E-value=1.7 Score=29.84 Aligned_cols=19 Identities=21% Similarity=0.630 Sum_probs=16.9
Q ss_pred CccHHHHHHHHHhcCcCCC
Q psy2182 43 SIFAWEIRDRLLAEGVCNN 61 (67)
Q Consensus 43 ~ifawEiR~~L~~~Gvc~~ 61 (67)
++|+|-+|.+++.+++++.
T Consensus 12 dcflWHvrkrfad~~lgDA 30 (215)
T 3f5t_A 12 DCFLWHVRKRFADQELGDA 30 (215)
T ss_dssp HHHHHHHHHHHHHHSCCCH
T ss_pred ehhhHHHHHHhhhccccCc
Confidence 5899999999999999763
No 15
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Probab=67.15 E-value=4.3 Score=27.33 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
-+.++|-|.-.+.-+++.+|++...|||+.|+.-.
T Consensus 219 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA 253 (274)
T 1r0r_E 219 TSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhC
Confidence 46778888888888899999999999999998753
No 16
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}
Probab=66.01 E-value=4.8 Score=27.16 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=29.8
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
.+.++|-|.-.+.-+++.+|++...|||+.|+.-.
T Consensus 223 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA 257 (278)
T 2b6n_A 223 TSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRA 257 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 34678888888888899999999999999998743
No 17
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*
Probab=64.94 E-value=5.1 Score=26.98 Aligned_cols=35 Identities=29% Similarity=0.232 Sum_probs=30.0
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
.+.++|-|.-.+.-+++.+|++...+||+.|..-.
T Consensus 214 TS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA 248 (269)
T 1gci_A 214 TSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTA 248 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 45778888888888899999999999999998643
No 18
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.84 E-value=11 Score=21.42 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=29.1
Q ss_pred cCCC-CCCcCC--HHHHHHHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 18 IGGS-KPRVAT--NGVVTKIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 18 iGGs-kpk~~t--~~v~~~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
.||| +|-... -++.+.+.+++.-.|+|-.--|++-|.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~ 45 (67)
T 2dhy_A 3 SGSSGRPARQVRRLEFNQAMDDFKTMFPNMDYDIIECVLRANS 45 (67)
T ss_dssp CSCCCCCCCCCCCCCSHHHHHHHHHHCSSSCHHHHHHHHHHHT
T ss_pred CCCCCCcchhccCCCHHHHHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4454 554333 357777888899999999999999886644
No 19
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Probab=62.45 E-value=5.5 Score=26.94 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=29.4
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhc
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAE 56 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~ 56 (67)
-+.++|-|.-.+.-+++.+|++...|||+.|+.-
T Consensus 220 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~t 253 (281)
T 1to2_E 220 TSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 3577888888888889999999999999999864
No 20
>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}
Probab=61.66 E-value=5.8 Score=29.38 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=29.3
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhc
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAE 56 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~ 56 (67)
-+.++|-|+-.+.-+++.+|++...+||+.|+.-
T Consensus 335 TSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~T 368 (600)
T 3hjr_A 335 TSSATPSTSGAMALLMSAYPDLSVRDLRDLLARS 368 (600)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhh
Confidence 3567888888888889999999999999999864
No 21
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Probab=61.52 E-value=6.3 Score=26.66 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=29.0
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhc
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAE 56 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~ 56 (67)
.+.++|-|.-.+.-+++.+|++...+||+.|..-
T Consensus 249 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~t 282 (310)
T 2ixt_A 249 TSMATPHVSGLAAKIWAENPSLSNTQLRSNLQER 282 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 4567888888888889999999999999999863
No 22
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Probab=60.83 E-value=6.6 Score=27.05 Aligned_cols=35 Identities=26% Similarity=0.174 Sum_probs=30.2
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
.+.++|-|.-.+.-+++.+|++...|||+.|..-.
T Consensus 271 TS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA 305 (347)
T 2iy9_A 271 TSEATAIVSGVLAAMTSCNPRATATELKRTLLESA 305 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 35778888888888999999999999999998654
No 23
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=54.56 E-value=9.4 Score=27.39 Aligned_cols=34 Identities=24% Similarity=0.057 Sum_probs=29.4
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhc
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAE 56 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~ 56 (67)
-+.++|-|+-.+.-+++.+|++...+||..|..-
T Consensus 368 TSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~T 401 (441)
T 1y9z_A 368 TSMATPHVSGVATLVWSYHPECSASQVRAALNAT 401 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cccCCcccchHHHHHHHHCCCCCHHHHHHHHHhh
Confidence 4567888888888889999999999999999864
No 24
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1
Probab=52.58 E-value=10 Score=27.45 Aligned_cols=36 Identities=6% Similarity=-0.062 Sum_probs=30.0
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCc
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGV 58 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gv 58 (67)
-+.++|-|+-.+.-+++.+|++...+||+.|+.--.
T Consensus 260 TS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~ 295 (471)
T 1p8j_A 260 TSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSK 295 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCB
T ss_pred cccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCc
Confidence 356788888888888999999999999999987543
No 25
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=52.41 E-value=24 Score=20.72 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=28.4
Q ss_pred cccCCCCCCcCCHHHHHHHHHHHhhCC-CccHHHHHHHH
Q psy2182 16 RAIGGSKPRVATNGVVTKIADYKRECP-SIFAWEIRDRL 53 (67)
Q Consensus 16 g~iGGskpk~~t~~v~~~I~~~k~~~p-~ifawEiR~~L 53 (67)
|..|.|++.....++++.|+++-+.+| +|.--+|...+
T Consensus 1 ~~~~~~~~~~~~~~ie~~IL~l~~~~P~GItd~~L~~~~ 39 (81)
T 2dk8_A 1 GSSGSSGPDADPVEIENRIIELCHQFPHGITDQVIQNEM 39 (81)
T ss_dssp CCCSCCCSSSCHHHHHHHHHHHHHHCSSCEEHHHHHHHC
T ss_pred CCCCcccccccHHHHHHHHHHHHHhCCCCCCHHHHHHHC
Confidence 345667777778899999999999998 66666655443
No 26
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Probab=52.20 E-value=17 Score=25.11 Aligned_cols=34 Identities=21% Similarity=0.074 Sum_probs=26.8
Q ss_pred CCcCCHHHHHHHHHHHhh-----CCCccHHHHHHHHHhc
Q psy2182 23 PRVATNGVVTKIADYKRE-----CPSIFAWEIRDRLLAE 56 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~-----~p~ifawEiR~~L~~~ 56 (67)
.+.++|-|.-.+.-+++. +|.+...|||+.|+.-
T Consensus 249 TS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~t 287 (327)
T 2x8j_A 249 TAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRR 287 (327)
T ss_dssp GGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHh
Confidence 467788776666666666 9999999999999864
No 27
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*
Probab=48.64 E-value=13 Score=27.28 Aligned_cols=36 Identities=8% Similarity=-0.022 Sum_probs=30.2
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCc
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGV 58 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gv 58 (67)
-+.++|-|+-.+.-+++.+|.+...+||+.|+.-..
T Consensus 271 TS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~ 306 (503)
T 2id4_A 271 TSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAV 306 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCB
T ss_pred ccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccc
Confidence 456788888888888899999999999999987543
No 28
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=46.77 E-value=18 Score=20.24 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=23.5
Q ss_pred cCCHHHHHHHHHHHhhCC---CccHHHHHHHH
Q psy2182 25 VATNGVVTKIADYKRECP---SIFAWEIRDRL 53 (67)
Q Consensus 25 ~~t~~v~~~I~~~k~~~p---~ifawEiR~~L 53 (67)
..+++....|+.+-++++ .+.+-||-++|
T Consensus 10 ~~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L 41 (77)
T 1qgp_A 10 SIYQDQEQRILKFLEELGEGKATTAHDLSGKL 41 (77)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCEEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHH
Confidence 346778889999999999 99999985554
No 29
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Probab=45.97 E-value=14 Score=28.27 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=30.1
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
.+.++|-|+-.+.-+++.+|++...|||+.|+.-.
T Consensus 233 TSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tA 267 (546)
T 2qtw_B 233 TSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFS 267 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhc
Confidence 45778888888888899999999999999998743
No 30
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=40.92 E-value=26 Score=22.06 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=22.9
Q ss_pred ccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcC
Q psy2182 17 AIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVC 59 (67)
Q Consensus 17 ~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc 59 (67)
++|...|+.+....-+..+.|-... +-+..|||++|.+.|+-
T Consensus 6 ~~~~~~~~~~~~~a~~~Al~~Ls~r-~~s~~EL~~KL~~kg~~ 47 (162)
T 3dfg_A 6 PAPKRGRRFKEQTPVQRALGLLVHR-EHSKKELNRKLQARGIE 47 (162)
T ss_dssp -----------CCHHHHHHHHHHHS-CCCHHHHHHHHHHTTCC
T ss_pred CCCCCCCcchHHHHHHHHHHHhhch-hhhHHHHHHHHHhcCCC
Confidence 3555566666656666666666554 56778999999998863
No 31
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} PDB: 3hjr_A
Probab=40.39 E-value=20 Score=26.78 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=29.9
Q ss_pred CcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCc
Q psy2182 24 RVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGV 58 (67)
Q Consensus 24 k~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gv 58 (67)
+.++|-|+-.+.-+++.+|++...+||..|+.--.
T Consensus 336 S~AaP~VAGvaALl~s~~P~lt~~~vk~~L~~tA~ 370 (600)
T 2oxa_A 336 SSATPSTSGAMALLMSAYPDLSVRDLRDLLARSAT 370 (600)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCB
T ss_pred hHHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCc
Confidence 46788888888888999999999999999987543
No 32
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=40.16 E-value=37 Score=17.15 Aligned_cols=28 Identities=21% Similarity=0.083 Sum_probs=21.4
Q ss_pred HHHHHHHHhhCCCccHHHHHHHHHhcCc
Q psy2182 31 VTKIADYKRECPSIFAWEIRDRLLAEGV 58 (67)
Q Consensus 31 ~~~I~~~k~~~p~ifawEiR~~L~~~Gv 58 (67)
...|..+..+++.+.+.||-+.|.++|.
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~ 34 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGY 34 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 3456666677788999999999987764
No 33
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Probab=40.09 E-value=33 Score=23.27 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=24.3
Q ss_pred CcCCHH---HHHHHHHH-HhhCCCccHHHHHHHHHhcCc
Q psy2182 24 RVATNG---VVTKIADY-KRECPSIFAWEIRDRLLAEGV 58 (67)
Q Consensus 24 k~~t~~---v~~~I~~~-k~~~p~ifawEiR~~L~~~Gv 58 (67)
+.++|- ++.+++++ ++.+|.+...|||+.|+.-..
T Consensus 276 S~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~ 314 (340)
T 3lpc_A 276 SMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTS 314 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCB
T ss_pred hHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCC
Confidence 455564 44455554 556799999999999987543
No 34
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=38.93 E-value=18 Score=18.96 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCcCCCCCCC
Q psy2182 46 AWEIRDRLLAEGVCNNDNIP 65 (67)
Q Consensus 46 awEiR~~L~~~Gvc~~~~~p 65 (67)
-||=-.++++.|+...+++|
T Consensus 3 mWErVk~ilks~l~~aS~iP 22 (40)
T 1f8v_D 3 FWEGVLRVLNQISGTLSVIP 22 (40)
T ss_dssp HHHHHHHHHHHTCCC-----
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 49999999999999999988
No 35
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=38.71 E-value=23 Score=26.48 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=29.6
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
-+.++|-|+-.+.-+++.+|++...+||+.|..-.
T Consensus 358 TSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA 392 (539)
T 3afg_A 358 TAMATPHVAGIAALLLQAHPSWTPDKVKTALIETA 392 (539)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhC
Confidence 35678888888888899999999999999998654
No 36
>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}
Probab=38.33 E-value=7.1 Score=24.46 Aligned_cols=16 Identities=6% Similarity=-0.026 Sum_probs=13.5
Q ss_pred cccchhhhcccccccc
Q psy2182 2 YSEEGYYETGSIKPRA 17 (67)
Q Consensus 2 ~~L~Ry~eTGsi~Pg~ 17 (67)
|+|+.+.+.|||+||.
T Consensus 354 ~~lgl~~~~GsI~~G~ 369 (403)
T 3mtw_A 354 EALGRSKDVGQVAVGR 369 (403)
T ss_dssp HHHTCTTTSSSCCTTS
T ss_pred HHhCCCCCceeeCCCC
Confidence 5678888899999995
No 37
>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A
Probab=37.22 E-value=25 Score=24.49 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=22.4
Q ss_pred CcCCHHH---HHHHHHH-HhhCCCccHHHHHHHHHhc
Q psy2182 24 RVATNGV---VTKIADY-KRECPSIFAWEIRDRLLAE 56 (67)
Q Consensus 24 k~~t~~v---~~~I~~~-k~~~p~ifawEiR~~L~~~ 56 (67)
+.++|-| +.+++++ .+.+|.+...|||+.|+.-
T Consensus 274 S~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~t 310 (357)
T 4h6x_A 274 SMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKT 310 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhh
Confidence 3455644 3444443 3568999999999999864
No 38
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=35.55 E-value=58 Score=18.60 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHhhCCCccHHHHHHHH
Q psy2182 27 TNGVVTKIADYKRECPSIFAWEIRDRL 53 (67)
Q Consensus 27 t~~v~~~I~~~k~~~p~ifawEiR~~L 53 (67)
.++..++|++|-..+..+.+-||-+.|
T Consensus 9 ~~~~~~~IL~~Lk~~g~~ta~eiA~~L 35 (79)
T 1xmk_A 9 MAEIKEKICDYLFNVSDSSALNLAKNI 35 (79)
T ss_dssp HHHHHHHHHHHHHHTCCEEHHHHHHHH
T ss_pred chhHHHHHHHHHHHcCCcCHHHHHHHc
Confidence 467889999999999999999987665
No 39
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=34.96 E-value=34 Score=19.51 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHhhCC---CccHHHHHHHH
Q psy2182 27 TNGVVTKIADYKRECP---SIFAWEIRDRL 53 (67)
Q Consensus 27 t~~v~~~I~~~k~~~p---~ifawEiR~~L 53 (67)
..+....|+++-++++ .+.+-||=++|
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~L 37 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKL 37 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHH
Confidence 4467888999888998 89999885443
No 40
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=33.98 E-value=30 Score=26.18 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=28.3
Q ss_pred CcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhc
Q psy2182 24 RVATNGVVTKIADYKRECPSIFAWEIRDRLLAE 56 (67)
Q Consensus 24 k~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~ 56 (67)
+.++|-|+-...-+++.+|+....+||..|..-
T Consensus 415 SMAaPhVAGvaALl~q~~P~~spa~IksaLmtT 447 (621)
T 3vta_A 415 SMSCPHITGIATYVKTYNPTWSPAAIKSALMTT 447 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHT
T ss_pred cccchhhhhHHHHHHHHCCCCCHHHHHHHHHhc
Confidence 567888888888889999999999999999753
No 41
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=33.71 E-value=10 Score=23.75 Aligned_cols=16 Identities=25% Similarity=0.050 Sum_probs=13.3
Q ss_pred cccchhhhcccccccc
Q psy2182 2 YSEEGYYETGSIKPRA 17 (67)
Q Consensus 2 ~~L~Ry~eTGsi~Pg~ 17 (67)
|+|+.+.+.|||+||.
T Consensus 361 ~~lgl~~~~Gsi~~G~ 376 (426)
T 3mkv_A 361 EVLGMQDKLGRIVPGA 376 (426)
T ss_dssp HHTTCBTTBSSCCTTS
T ss_pred HHhCCCCCcceeCCCC
Confidence 5677788899999995
No 42
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=33.17 E-value=49 Score=19.15 Aligned_cols=50 Identities=18% Similarity=0.176 Sum_probs=30.9
Q ss_pred cchhhhcccccccccCCCCCCcCCHHHHH---HHHHHHhhCCCccHHHHHHHHHh
Q psy2182 4 EEGYYETGSIKPRAIGGSKPRVATNGVVT---KIADYKRECPSIFAWEIRDRLLA 55 (67)
Q Consensus 4 L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~---~I~~~k~~~p~ifawEiR~~L~~ 55 (67)
|..|.+.|-+.|-....+.-+.-+++.+. .|..++.. ++..-||++.|..
T Consensus 19 LR~ye~~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~--G~~l~~I~~~l~~ 71 (109)
T 1r8d_A 19 LHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEI--GFRLDEIKEMLDH 71 (109)
T ss_dssp HHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHT--TCCHHHHHHHHHC
T ss_pred HHHHHHCCCCCCCeECCCCCeeeCHHHHHHHHHHHHHHHC--CCCHHHHHHHHhC
Confidence 55677889998865322222445555544 44444433 7888999887753
No 43
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...
Probab=32.56 E-value=17 Score=24.61 Aligned_cols=34 Identities=15% Similarity=-0.094 Sum_probs=27.8
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
.+.++|-|.-.+.-+++. |.+...|||+.|++-.
T Consensus 223 TS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA 256 (279)
T 2pwa_A 223 TSMATPHVAGLAAYLMTL-GKTTAASACRYIADTA 256 (279)
T ss_dssp HHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhC
Confidence 456788888877777778 9999999999998754
No 44
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=31.13 E-value=97 Score=19.27 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=36.1
Q ss_pred CcccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCC
Q psy2182 1 MYSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNN 61 (67)
Q Consensus 1 ~~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~ 61 (67)
|.-+++|+|.-- |++. +.++...-.-|.+.......+..-||++-|.+.|+-..
T Consensus 4 ~~~~~~~~~~~~--~~p~-----~~~s~~~~~e~~~~~~~l~kLtVaELK~~cr~~GL~~s 57 (114)
T 2rnn_A 4 MINLEDYWEDET--PGPD-----REPTNELRNEVEETITLMELLKVSELKDICRSVSFPVS 57 (114)
T ss_dssp SCCGGGSSCCCC--CCCS-----SSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCTT
T ss_pred cchHhhhccccc--CCCc-----cccCCCCchhHHHHHHHHHHhhHHHHHHHHHHcCCCcC
Confidence 667889988765 4432 22233334455555555667999999999999998643
No 45
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1
Probab=30.69 E-value=35 Score=26.56 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=29.4
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
-+.++|-|+-.+.-+++.+|++...+||+.|..-.
T Consensus 380 TSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA 414 (671)
T 1r6v_A 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTA 414 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhC
Confidence 35678888888888889999999999999998754
No 46
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=30.56 E-value=6.9 Score=30.69 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=32.0
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcC
Q psy2182 20 GSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVC 59 (67)
Q Consensus 20 Gskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc 59 (67)
|-.|+....++.+.+..+.+++-.+|. +|...|.++||+
T Consensus 69 g~~p~~~l~~i~~~~~~~~~~~~~~~~-~l~~~L~~~gI~ 107 (687)
T 1xdp_A 69 NSHSRHLLGKIQSRVLKADQEFDGLYN-ELLLEMARNQIF 107 (687)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTTCE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCEE
Confidence 777777777777778777777777887 999999999996
No 47
>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}
Probab=29.90 E-value=68 Score=21.29 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=23.3
Q ss_pred CcCCHH---HHHHHHHH-HhhCCCccHHHHHHHHHhcC
Q psy2182 24 RVATNG---VVTKIADY-KRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 24 k~~t~~---v~~~I~~~-k~~~p~ifawEiR~~L~~~G 57 (67)
+.++|- ++.+++++ ++.+|.+...|||+.|+.-.
T Consensus 224 S~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA 261 (306)
T 4h6w_A 224 SFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASA 261 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTC
T ss_pred cchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhC
Confidence 344553 44444443 56789999999999998753
No 48
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A
Probab=29.78 E-value=23 Score=23.59 Aligned_cols=33 Identities=15% Similarity=-0.085 Sum_probs=28.0
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhc
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAE 56 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~ 56 (67)
-+.++|-|.-.+.-+.+.+|. ...|+|+.|+.-
T Consensus 224 TS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~t 256 (279)
T 3f7m_A 224 TSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTL 256 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHh
Confidence 456788888888888999999 999999999864
No 49
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.46 E-value=76 Score=19.48 Aligned_cols=49 Identities=18% Similarity=0.070 Sum_probs=31.5
Q ss_pred cchhhhcccccccccCCCCCCcCCHHHHH---HHHHHHhhCCCccHHHHHHHHH
Q psy2182 4 EEGYYETGSIKPRAIGGSKPRVATNGVVT---KIADYKRECPSIFAWEIRDRLL 54 (67)
Q Consensus 4 L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~---~I~~~k~~~p~ifawEiR~~L~ 54 (67)
|.-|.+.|-+.|-....+.-+.-+++.+. .|..++. -++.+-||++-|.
T Consensus 19 LR~Ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~--~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 19 IRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRR--AGLSIEALIDYLA 70 (142)
T ss_dssp HHHHHHHTSSCCCCBCTTSCBCBCHHHHHHHHHHHHHHH--TTCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCCcCCCCCCeeeCHHHHHHHHHHHHHHH--cCCCHHHHHHHHH
Confidence 55677889999943333333455555444 5556654 4899999998764
No 50
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=29.44 E-value=78 Score=19.47 Aligned_cols=49 Identities=12% Similarity=0.025 Sum_probs=31.4
Q ss_pred cchhhhcccccccccCCCCCCcCCHHHHHH---HHHHHhhCCCccHHHHHHHHH
Q psy2182 4 EEGYYETGSIKPRAIGGSKPRVATNGVVTK---IADYKRECPSIFAWEIRDRLL 54 (67)
Q Consensus 4 L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~---I~~~k~~~p~ifawEiR~~L~ 54 (67)
|.-|.+.|-+.|-.-..+.-+.-+++.+.. |..++. -++.+-||++-|.
T Consensus 33 LR~Ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~--~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 33 IRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKN--TGMPIQKIKQFID 84 (148)
T ss_dssp HHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHT--TTCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHH--cCCCHHHHHHHHH
Confidence 556788899986444333345556655444 444433 4899999998876
No 51
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=29.27 E-value=24 Score=17.57 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=10.0
Q ss_pred HHHHHhcCcCCC
Q psy2182 50 RDRLLAEGVCNN 61 (67)
Q Consensus 50 R~~L~~~Gvc~~ 61 (67)
|+.|+++||...
T Consensus 18 reelikrgvlke 29 (32)
T 4b1v_M 18 REELIKRGVLKE 29 (32)
T ss_dssp HHHHHHTTSCCC
T ss_pred HHHHHHhhhhhh
Confidence 899999998643
No 52
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=28.33 E-value=49 Score=22.16 Aligned_cols=52 Identities=10% Similarity=0.024 Sum_probs=30.7
Q ss_pred cchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhC--CCccHHHHHHHHHh
Q psy2182 4 EEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKREC--PSIFAWEIRDRLLA 55 (67)
Q Consensus 4 L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~--p~ifawEiR~~L~~ 55 (67)
|.-|.+.|-+.|..-..+.-+.-+++.+..+...+.-. -++..-||++-|..
T Consensus 17 LRyYE~~GLl~p~~R~~~gyR~Y~~~dl~~L~~I~~lr~~~G~sL~eIk~~l~~ 70 (222)
T 2dg6_A 17 IKYYLREGLLPPGRQVNATTAEYDEDHLRRLRLVRALIQVGKVPVATAREVLGH 70 (222)
T ss_dssp HHHHHHHTSSCCC---------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCeeCCCCceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 45677889999855433334556777666666554332 37999999998764
No 53
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=28.18 E-value=96 Score=18.74 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=28.6
Q ss_pred cccccccCCC----CCCcCCHHHHHHH------HHHHhhCCCccHHHHHHHHH
Q psy2182 12 SIKPRAIGGS----KPRVATNGVVTKI------ADYKRECPSIFAWEIRDRLL 54 (67)
Q Consensus 12 si~Pg~iGGs----kpk~~t~~v~~~I------~~~k~~~p~ifawEiR~~L~ 54 (67)
.+.|+..||- ..++....+++.+ ++...+.|++....|.+.|.
T Consensus 35 ~~dP~i~~G~P~I~GTRI~V~~Il~~l~~G~s~eeIl~~yP~Lt~edI~aAL~ 87 (106)
T 2ga1_A 35 QITPGVCGGQARIRNTRIPVWTLVAYRQQGAPDKELLANYPGLTAEDLSAAWH 87 (106)
T ss_dssp ECCTTSGGGCCEETTSCCBHHHHHHHHHTTCCHHHHHHHSTTCCHHHHHHHHH
T ss_pred EeCccccCCccEEecceeeHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 4678888874 2245566666554 23566789998888887764
No 54
>2xuv_A HDEB, 10K-L protein; unknown function; HET: MLY; 1.50A {Escherichia coli}
Probab=27.88 E-value=19 Score=21.03 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhCCCccHHHHHHHHHh
Q psy2182 30 VVTKIADYKRECPSIFAWEIRDRLLA 55 (67)
Q Consensus 30 v~~~I~~~k~~~p~ifawEiR~~L~~ 55 (67)
++.+|.+|-+.+|..-+|+++++|-.
T Consensus 50 ~~Pkvie~Ckk~P~~sl~~~~~~~~~ 75 (79)
T 2xuv_A 50 QIPXVIEYCXXNPQXNLYTFXNQASN 75 (79)
T ss_dssp HHHHHHHHHHHCTTSBGGGGGC----
T ss_pred cccHHHHHHhcCCcchHHHHHHHHHH
Confidence 68899999999999999999988754
No 55
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=27.74 E-value=1e+02 Score=20.36 Aligned_cols=35 Identities=20% Similarity=0.078 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcC
Q psy2182 25 VATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVC 59 (67)
Q Consensus 25 ~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc 59 (67)
...+.-.++|.++-++++=-..-||.+.|.++|+-
T Consensus 29 ~k~~~r~~~I~eiI~~~~I~TQeEL~~~L~~~Gi~ 63 (180)
T 3v4g_A 29 EKQDNLVRAFKALLKEERFGSQGEIVEALKQEGFE 63 (180)
T ss_dssp -CHHHHHHHHHHHHHHTCCCSHHHHHHHHHHTTCT
T ss_pred ccHHHHHHHHHHHHhhCCcCCHHHHHHHHHHCCCc
Confidence 34456778899998999888899999999999985
No 56
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=27.33 E-value=66 Score=19.48 Aligned_cols=49 Identities=14% Similarity=0.056 Sum_probs=30.5
Q ss_pred cchhhhcccccccccCCCCCCcCCHHHHH---HHHHHHhhCCCccHHHHHHHHH
Q psy2182 4 EEGYYETGSIKPRAIGGSKPRVATNGVVT---KIADYKRECPSIFAWEIRDRLL 54 (67)
Q Consensus 4 L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~---~I~~~k~~~p~ifawEiR~~L~ 54 (67)
|..|.+.|-+.|-....+.-+.-+++.+. .|..++.. ++.+-||++-|.
T Consensus 17 LR~ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~--G~sl~eI~~~l~ 68 (135)
T 1q06_A 17 IRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQV--GFNLEESGELVN 68 (135)
T ss_dssp HHHHHHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHT--TCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCCccCCCCCeeeCHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 55677889998853222223445555544 44455443 799999998875
No 57
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=26.94 E-value=81 Score=20.51 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhCCCccHHHHHHHHHhcCcC
Q psy2182 30 VVTKIADYKRECPSIFAWEIRDRLLAEGVC 59 (67)
Q Consensus 30 v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc 59 (67)
--++|.++-.+++=-..-||.+.|.++|+-
T Consensus 21 R~~~I~~iI~~~~I~tQeEL~~~L~~~Gi~ 50 (170)
T 3lap_A 21 RQARIVAILSSAQVRSQNELAALLAAEGIE 50 (170)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 345788888899888899999999999984
No 58
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=25.55 E-value=71 Score=19.72 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=32.0
Q ss_pred cchhhhcccccccccCCCCCCcCCHHHHHHH---HHHHhhCCCccHHHHHHHHHh
Q psy2182 4 EEGYYETGSIKPRAIGGSKPRVATNGVVTKI---ADYKRECPSIFAWEIRDRLLA 55 (67)
Q Consensus 4 L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I---~~~k~~~p~ifawEiR~~L~~ 55 (67)
|..|-+.|-+.|-....+.-+.-+++.+..+ ..++. -++..-||++-|..
T Consensus 21 LR~ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~--~G~sl~~I~~~l~~ 73 (146)
T 3hh0_A 21 LRYYDKINLLKPSDYTEGGHRLYTKDDLYVLQQIQSFKH--LGFSLGEIQNIILQ 73 (146)
T ss_dssp HHHHHHTTSSCCSEECTTSCEEBCHHHHHHHHHHHHHHH--TTCCHHHHHHHHTS
T ss_pred HHHHHHCCCCCCCeECCCCCEeeCHHHHHHHHHHHHHHH--cCCCHHHHHHHHHc
Confidence 5667888999886433333455566655544 44443 37888899887653
No 59
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=25.37 E-value=1e+02 Score=17.82 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhCC---CccHHHHHHHHH
Q psy2182 28 NGVVTKIADYKRECP---SIFAWEIRDRLL 54 (67)
Q Consensus 28 ~~v~~~I~~~k~~~p---~ifawEiR~~L~ 54 (67)
..+.+.+.+|.+++| +|---|||.++.
T Consensus 69 ~~l~~~L~~yH~~~P~~~G~~keeLr~~~~ 98 (135)
T 2v9v_A 69 QAVTRALEEFHSRYPLRPGLAREELRSRYF 98 (135)
T ss_dssp HHHHHHHHHHHHHCTTSSCEEHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCccCCCHHHHHHHhc
Confidence 346677778888887 788888887763
No 60
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A
Probab=24.82 E-value=41 Score=23.99 Aligned_cols=36 Identities=17% Similarity=0.051 Sum_probs=29.7
Q ss_pred CCcCCHHHHHHHHHHHhhCC-CccHHHHHHHHHhcCc
Q psy2182 23 PRVATNGVVTKIADYKRECP-SIFAWEIRDRLLAEGV 58 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p-~ifawEiR~~L~~~Gv 58 (67)
-+.++|-|+-.+.-+++.+| .+...+||..|+.-..
T Consensus 406 TS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~ 442 (471)
T 3t41_A 406 TALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGT 442 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSB
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCC
Confidence 45778888888888888999 8999999999987543
No 61
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=24.79 E-value=84 Score=20.92 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHhhCCCccHHHHHHHH
Q psy2182 27 TNGVVTKIADYKRECPSIFAWEIRDRL 53 (67)
Q Consensus 27 t~~v~~~I~~~k~~~p~ifawEiR~~L 53 (67)
..+.++.|.++- ++..|++.|.||.|
T Consensus 201 ~~~~~~~l~~~~-~~~~it~a~~Rd~l 226 (258)
T 1lva_A 201 LGEAREVIKNLA-STGPFGLAEARDAL 226 (258)
T ss_dssp HHHHHHHHHHHH-TTSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCCcCHHHHHHHh
Confidence 445677777777 78999999999987
No 62
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=24.76 E-value=7.9 Score=22.84 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=26.6
Q ss_pred cccchhhhcc-cccccccCCCCCCcCCHHHHHHHHHHHhhCCCc
Q psy2182 2 YSEEGYYETG-SIKPRAIGGSKPRVATNGVVTKIADYKRECPSI 44 (67)
Q Consensus 2 ~~L~Ry~eTG-si~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~i 44 (67)
.||..|++.. +++ +..|+-.+...+++|.+.+..+-+.+|++
T Consensus 36 ~IL~~y~~~~~~~~-~~~~~~~~~~~~~~V~~~V~~LF~~h~DL 78 (89)
T 1g1e_B 36 EILHTYQKEQRNAK-EAGGNYTPALTEQEVYAQVARLFKNQEDL 78 (89)
T ss_dssp HHHHHHHHHHHHHH-HTTSCCCCSCCHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHhccCccc-cccccccccccHHHHHHHHHHHHccCHHH
Confidence 4677776532 332 22233335566789999999988888765
No 63
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=24.53 E-value=68 Score=17.07 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=15.8
Q ss_pred CccHHHHHHHHHhcCcCCCC
Q psy2182 43 SIFAWEIRDRLLAEGVCNND 62 (67)
Q Consensus 43 ~ifawEiR~~L~~~Gvc~~~ 62 (67)
.+..-|||+.|.++|+-...
T Consensus 7 kltV~eLK~~Lk~RGL~~~G 26 (51)
T 1h1j_S 7 SLTVVQLKDLLTKRNLSVGG 26 (51)
T ss_dssp GCCHHHHHHHHHHTTCCCCS
T ss_pred HCcHHHHHHHHHHcCCCCCC
Confidence 46778999999999986543
No 64
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=24.48 E-value=14 Score=23.70 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=31.0
Q ss_pred hhhcccccccc------cCCCCCCcCCHHHHHHHHHHHhhCC
Q psy2182 7 YYETGSIKPRA------IGGSKPRVATNGVVTKIADYKRECP 42 (67)
Q Consensus 7 y~eTGsi~Pg~------iGGskpk~~t~~v~~~I~~~k~~~p 42 (67)
+++.|.+.||- ..+..++.+-++.+..|+.+|.+-|
T Consensus 88 ~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aP 129 (147)
T 2wp4_A 88 AHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVP 129 (147)
T ss_dssp EEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhCC
Confidence 46789999984 5778888999999999999999977
No 65
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=24.35 E-value=81 Score=19.98 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCC
Q psy2182 28 NGVVTKIADYKRECPSIFAWEIRDRLLAEGVCN 60 (67)
Q Consensus 28 ~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~ 60 (67)
|..+-....+..++|+-.-.||++.|. .++|.
T Consensus 105 pg~im~a~~ll~~~~~pt~~~i~~~l~-gnlcR 136 (161)
T 1rm6_C 105 PGMIMASEALLRKNPSPSRDEIKAALA-GNLCR 136 (161)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHTT-TCCCS
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHc-CCeEC
Confidence 344555566777899988999999874 57774
No 66
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=23.92 E-value=73 Score=16.89 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.7
Q ss_pred CccHHHHHHHHHhcCcCCC
Q psy2182 43 SIFAWEIRDRLLAEGVCNN 61 (67)
Q Consensus 43 ~ifawEiR~~L~~~Gvc~~ 61 (67)
.+..-|||+.|.++|+-..
T Consensus 12 klkV~eLK~eLk~RgL~~~ 30 (50)
T 1zrj_A 12 RLKVNELREELQRRGLDTR 30 (50)
T ss_dssp GSCHHHHHHHHHHTTCCCC
T ss_pred HCcHHHHHHHHHHcCCCCC
Confidence 5778899999999998654
No 67
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=23.45 E-value=56 Score=25.07 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=28.8
Q ss_pred CcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 24 RVATNGVVTKIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 24 k~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
+.++|-|+-...-+|+.+|+....+||..|..--
T Consensus 426 SMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA 459 (649)
T 3i6s_A 426 SMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTA 459 (649)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHhCCCCCHHHHHHHHhccc
Confidence 4678888888888899999999999999998643
No 68
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=23.30 E-value=20 Score=28.39 Aligned_cols=54 Identities=9% Similarity=0.023 Sum_probs=31.5
Q ss_pred hhhhcccccc-cccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcC
Q psy2182 6 GYYETGSIKP-RAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVC 59 (67)
Q Consensus 6 Ry~eTGsi~P-g~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc 59 (67)
+..+.|.-.+ ....|-.|+....++.+.+..+.+++=.+|.-+|...|.++||+
T Consensus 62 ~~~~~~~~~~~~~~~g~tp~eql~~I~~~~~~l~~~q~~~~~~~l~p~L~~~gI~ 116 (705)
T 2o8r_A 62 AVLQKRRDRSEAEEDSDADAHILQAIRETVIRQDELYYRIFYDQILPTLEEHGIR 116 (705)
T ss_dssp HHTTC---------------CHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTEE
T ss_pred HHHHcCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 3344555444 12347778777778888888887777778777899999999995
No 69
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Probab=23.29 E-value=24 Score=24.09 Aligned_cols=35 Identities=20% Similarity=0.084 Sum_probs=25.8
Q ss_pred CCcCCHHHHHHHHHHHhhC-------------CCccHHHHHHHHHhcC
Q psy2182 23 PRVATNGVVTKIADYKREC-------------PSIFAWEIRDRLLAEG 57 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~-------------p~ifawEiR~~L~~~G 57 (67)
.+.++|-|.-.+.-+++.+ |.+...|||+.|..-.
T Consensus 245 TS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta 292 (320)
T 2z30_A 245 TAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA 292 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhC
Confidence 4566777666666566655 9999999999998653
No 70
>2i9s_A MESD, mesoderm development candidate 2; ferredoxin-like-fold, chaperone; NMR {Mus musculus}
Probab=22.70 E-value=53 Score=19.98 Aligned_cols=20 Identities=35% Similarity=0.836 Sum_probs=16.1
Q ss_pred CCccHHHHHHHHHhcCcCCC
Q psy2182 42 PSIFAWEIRDRLLAEGVCNN 61 (67)
Q Consensus 42 p~ifawEiR~~L~~~Gvc~~ 61 (67)
-+-.|||++|-|+++-=|..
T Consensus 67 DG~~a~E~kdFL~~Q~e~~~ 86 (97)
T 2i9s_A 67 DGSYAWEIKDFLVSQDRCAE 86 (97)
T ss_dssp SSSSHHHHHHHHHHHSSSCE
T ss_pred ChHHHHHHHHHHhcCcceeE
Confidence 35679999999999877753
No 71
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM, iron, trans ION transport, proteobacteria, iron transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica} SCOP: e.62.1.1 PDB: 2j0r_A*
Probab=22.53 E-value=51 Score=23.83 Aligned_cols=27 Identities=11% Similarity=0.294 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHhhCCCccHHHHHHHH
Q psy2182 27 TNGVVTKIADYKRECPSIFAWEIRDRL 53 (67)
Q Consensus 27 t~~v~~~I~~~k~~~p~ifawEiR~~L 53 (67)
|+...+.|.+++++||.+.+.++=++|
T Consensus 2 ~~~l~~~~~~~~~~~P~~~~rd~A~~l 28 (345)
T 2j0p_A 2 SKSIYEQYLQAKADNPGKYARDLATLM 28 (345)
T ss_dssp --CHHHHHHHHHHTCTTCCHHHHHHHT
T ss_pred chHHHHHHHHHHHhCcCCcHHHHHHHc
Confidence 344678899999999999998875553
No 72
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=22.18 E-value=16 Score=23.40 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=30.8
Q ss_pred hhhcccccccc------cCCCCCCcCCHHHHHHHHHHHhhCC
Q psy2182 7 YYETGSIKPRA------IGGSKPRVATNGVVTKIADYKRECP 42 (67)
Q Consensus 7 y~eTGsi~Pg~------iGGskpk~~t~~v~~~I~~~k~~~p 42 (67)
++..|.+.||- ..+..++.+-++....|+.+|.+-|
T Consensus 80 ~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aP 121 (149)
T 2q5w_E 80 VHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVP 121 (149)
T ss_dssp EEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEcccCCCCeEEEEEEEcccHHHHHHHHHHHHHHHHhhCC
Confidence 46789999984 5778888999999999999999877
No 73
>3bbn_R Ribosomal protein S18; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=21.89 E-value=38 Score=20.86 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=18.2
Q ss_pred ccchhh-hcccccccccCCCCCC
Q psy2182 3 SEEGYY-ETGSIKPRAIGGSKPR 24 (67)
Q Consensus 3 ~L~Ry~-eTGsi~Pg~iGGskpk 24 (67)
+|.+|. |+|.|.|..+-|...+
T Consensus 35 lL~~FIse~GKIlpRRiTGlcaK 57 (103)
T 3bbn_R 35 LISRFISEQGKILSRRVNRLTLK 57 (103)
T ss_dssp HHTTTSCSSSSCCCSSSTTCCTT
T ss_pred HHHHHhccCCCCcCccccCCCHH
Confidence 577776 8999999999888664
No 74
>3ofh_A LDLR chaperone MESD; molecular chaperone, protein folding, YWTD propeller; 2.01A {Mus musculus}
Probab=21.87 E-value=40 Score=20.27 Aligned_cols=18 Identities=39% Similarity=0.925 Sum_probs=14.8
Q ss_pred CccHHHHHHHHHhcCcCC
Q psy2182 43 SIFAWEIRDRLLAEGVCN 60 (67)
Q Consensus 43 ~ifawEiR~~L~~~Gvc~ 60 (67)
+-.|||++|-|+++-=|.
T Consensus 61 Gs~awe~kdFL~~Q~~v~ 78 (89)
T 3ofh_A 61 GSYAWEIKDFLVSQDRCA 78 (89)
T ss_dssp GGGHHHHHHHHHTSTTEE
T ss_pred hHHHHHHHHHHHcCccee
Confidence 557999999999987664
No 75
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=21.82 E-value=16 Score=23.38 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=30.6
Q ss_pred hhhcccccccc------cCCCCCCcCCHHHHHHHHHHHhhCC
Q psy2182 7 YYETGSIKPRA------IGGSKPRVATNGVVTKIADYKRECP 42 (67)
Q Consensus 7 y~eTGsi~Pg~------iGGskpk~~t~~v~~~I~~~k~~~p 42 (67)
++..|.+.||- ..+..++.+-++....|+.+|.+-|
T Consensus 82 ~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aP 123 (150)
T 1fm0_E 82 IHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAP 123 (150)
T ss_dssp EEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEcccCCCCEEEEEEEEcCcHHHHHHHHHHHHHHHHhcCC
Confidence 46789999985 5677888999999999999999877
No 76
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Probab=21.66 E-value=65 Score=21.45 Aligned_cols=33 Identities=18% Similarity=0.038 Sum_probs=24.1
Q ss_pred CCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 23 PRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 23 pk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
.+.++|-|.-.+.-+ .+|.+...|||+.|+.-.
T Consensus 224 TS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta 256 (279)
T 1thm_A 224 TSMATPHVAGVAGLL--ASQGRSASNIRAAIENTA 256 (279)
T ss_dssp HHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhC
Confidence 345677666655555 579999999999998743
No 77
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=21.17 E-value=87 Score=18.16 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=14.1
Q ss_pred CccHHHHHHHHHhcCcCCC
Q psy2182 43 SIFAWEIRDRLLAEGVCNN 61 (67)
Q Consensus 43 ~ifawEiR~~L~~~Gvc~~ 61 (67)
.+..-||++.|.++|+-..
T Consensus 28 klkVaeLK~eLk~RGL~~s 46 (75)
T 2kvu_A 28 DMKVAELKQELKLRSLPVS 46 (75)
T ss_dssp TSCHHHHHHHHHHTTCCCC
T ss_pred HCcHHHHHHHHHHcCCCCC
Confidence 5777888888888887543
No 78
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=21.15 E-value=23 Score=18.89 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCcCCCCCCC
Q psy2182 46 AWEIRDRLLAEGVCNNDNIP 65 (67)
Q Consensus 46 awEiR~~L~~~Gvc~~~~~p 65 (67)
-||=-.++++.|+...+++|
T Consensus 3 mWErVk~ilks~l~~aS~iP 22 (44)
T 1nov_D 3 FWERVRSILKSGLNFASTIP 22 (44)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 49999999999999888888
No 79
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme biosynthesis, structural genomics, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=20.78 E-value=16 Score=23.53 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=30.8
Q ss_pred hhhcccccccc------cCCCCCCcCCHHHHHHHHHHHhhCC
Q psy2182 7 YYETGSIKPRA------IGGSKPRVATNGVVTKIADYKRECP 42 (67)
Q Consensus 7 y~eTGsi~Pg~------iGGskpk~~t~~v~~~I~~~k~~~p 42 (67)
++..|.+.||- ..+..++.+-++....|+.+|.+-|
T Consensus 86 ~HR~G~l~vGe~iv~VaVss~HR~~Af~A~~~~iD~lK~~aP 127 (154)
T 2omd_A 86 HHRLGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKRVP 127 (154)
T ss_dssp EEECEEEETTSCCEEEEEEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhCC
Confidence 46789999984 5777888999999999999999987
No 80
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=20.65 E-value=1.2e+02 Score=17.24 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=27.0
Q ss_pred cCCHHHHHHHHHH-HhhCCC--ccHHHHHHHHHhcCcC
Q psy2182 25 VATNGVVTKIADY-KRECPS--IFAWEIRDRLLAEGVC 59 (67)
Q Consensus 25 ~~t~~v~~~I~~~-k~~~p~--ifawEiR~~L~~~Gvc 59 (67)
+...++-+.|.++ ..|+|. +.--+|-+.|.++|+-
T Consensus 16 ~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~Gi~ 53 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENEDKRKPYSDQEIANILKEKGFK 53 (76)
T ss_dssp CCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTTSSC
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCC
Confidence 4667888888887 445454 7788899999999984
No 81
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=20.32 E-value=1.2e+02 Score=16.45 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=30.6
Q ss_pred cchhhhc-ccccccccCCCCCCcCCHHHHH---HHHHHHhhCCCccHHHHHHHHHhcC
Q psy2182 4 EEGYYET-GSIKPRAIGGSKPRVATNGVVT---KIADYKRECPSIFAWEIRDRLLAEG 57 (67)
Q Consensus 4 L~Ry~eT-Gsi~Pg~iGGskpk~~t~~v~~---~I~~~k~~~p~ifawEiR~~L~~~G 57 (67)
|..|.+. |-+.|.....+.-+.-+++.+. .|..++++ -++.+-||++.|....
T Consensus 22 lR~ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~-~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 22 LRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQE-EGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHH-TSTHHHHHHHHHHHSC
T ss_pred HHHHHHhCCCCCCcCCCCCCeeecCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHccC
Confidence 3445554 7778865320222334555444 45555522 4799999999987653
No 82
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=20.26 E-value=29 Score=18.47 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCcCCCCCCC
Q psy2182 46 AWEIRDRLLAEGVCNNDNIP 65 (67)
Q Consensus 46 awEiR~~L~~~Gvc~~~~~p 65 (67)
-||=-.++++.|+...+++|
T Consensus 3 ~WErVk~ilks~l~a~S~iP 22 (44)
T 2z2q_B 3 MWERVKSIIKSSLAAASNIP 22 (44)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 49999999999999888887
Done!