RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2182
         (67 letters)



>gnl|CDD|238076 cd00131, PAX, Paired Box domain.
          Length = 128

 Score =  112 bits (282), Expect = 2e-34
 Identities = 44/61 (72%), Positives = 50/61 (81%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+P AIGGSKPRVAT  VV KI  YK+E P +FAWEIRDRLL EGVC+  N+PS
Sbjct: 57  YYETGSIRPGAIGGSKPRVATPEVVKKIEIYKQENPGMFAWEIRDRLLQEGVCDKSNVPS 116

Query: 67  L 67
           +
Sbjct: 117 V 117


>gnl|CDD|109353 pfam00292, PAX, 'Paired box' domain. 
          Length = 125

 Score =  112 bits (281), Expect = 3e-34
 Identities = 47/61 (77%), Positives = 53/61 (86%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           Y ETGSI+P  IGGSKP+VAT  VV KIA+YKRE P IFAWEIRDRLLAEGVC+NDN+PS
Sbjct: 57  YQETGSIRPGVIGGSKPKVATPEVVKKIAEYKRENPGIFAWEIRDRLLAEGVCDNDNVPS 116

Query: 67  L 67
           +
Sbjct: 117 V 117


>gnl|CDD|128645 smart00351, PAX, Paired Box domain. 
          Length = 125

 Score =  110 bits (278), Expect = 1e-33
 Identities = 47/60 (78%), Positives = 53/60 (88%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+P AIGGSKP+VAT  VV KIADYK+E P IFAWEIRDRLL+EGVC+ DN+PS
Sbjct: 57  YYETGSIRPGAIGGSKPKVATPKVVKKIADYKQENPGIFAWEIRDRLLSEGVCDKDNVPS 116


>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases.  This model
           represents a family of at least two different sugar 1,4
           lactone oxidases, both involved in synthesizing ascorbic
           acid or a derivative. These include L-gulonolactone
           oxidase (EC 1.1.3.8) from rat and
           D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from
           Saccharomyces cerevisiae. Members are proposed to have
           the cofactor FAD covalently bound at a site specified by
           Prosite motif PS00862; OX2_COVAL_FAD; 1.
          Length = 438

 Score = 25.2 bits (55), Expect = 3.1
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 20  GSKPRVATNGVVTKIADYKRECPSIFAW-EIRDRLLAEGVCNND 62
           G KP  A    V K  D++   P++  + +IR +L   GV  N 
Sbjct: 395 GGKPHWAKAHNVCKQKDFEEMYPTLHKFCDIRKKLDPTGVFLNS 438


>gnl|CDD|220277 pfam09521, RE_NgoPII, NgoPII restriction endonuclease.  This family
           includes the NgoPII (recognises and cleaves GG^CC)
           restriction endonuclease.
          Length = 263

 Score = 23.7 bits (51), Expect = 9.0
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 41  CPSIFAWEIRDRLLAEGVCNNDNIPSL 67
           C +   WE +D + A G      +  L
Sbjct: 117 CKNCEKWEEKDIIYAIGTVPKRKLKLL 143


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,441,822
Number of extensions: 245569
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 5
Length of query: 67
Length of database: 10,937,602
Length adjustment: 38
Effective length of query: 29
Effective length of database: 9,252,150
Effective search space: 268312350
Effective search space used: 268312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (24.2 bits)