RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2182
         (67 letters)



>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 95.8 bits (239), Expect = 4e-29
 Identities = 36/49 (73%), Positives = 43/49 (87%)

Query: 18 IGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
          IGGSKP+VAT  VV KIA+YKR+ P++FAWEIRDRLLAE VC+ND +PS
Sbjct: 2  IGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPS 50


>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 65

 Score = 93.6 bits (233), Expect = 3e-28
 Identities = 41/48 (85%), Positives = 44/48 (91%)

Query: 19 GGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
          GGSKPRVAT  VV+KIA YK+ECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct: 1  GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLSEGVCTNDNIPS 48


>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 123

 Score = 71.1 bits (174), Expect = 1e-18
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           Y ETGSI+P  IGGSKPR+AT  +  +I +YKR  P +F+WEIR++L+ EGVC+    PS
Sbjct: 56  YQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPS 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 259,814
Number of extensions: 9160
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 3
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 47 (21.9 bits)