BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2184
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 164 bits (416), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 137/414 (33%), Positives = 210/414 (50%), Gaps = 28/414 (6%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
IV+ LL AS N+ + K +PLH+AA G+ ++ + LL + VN KD++T LH
Sbjct: 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ---NKAKVNAKAKDDQTPLH 85
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNA 167
CAA+ GHT +V LLE++ +P + + T L +AA+ G +ETV L++ +
Sbjct: 86 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV-------LALLEKEAS 138
Query: 168 RAQSTLFPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
+A T +PLH+A++ G L R N +G + LH A + + +IV+LL
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Query: 222 LTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQY 281
L S + G +PLH+AA V++ R LL +G S N + T LH AAQ
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS---ANAESVQGVTPLHLAAQE 255
Query: 282 GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST 341
GH +V+ LL + + N T L L AQ G + D L++ H ++ A +T
Sbjct: 256 GHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDA------TT 308
Query: 342 LFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGA 400
+PLH+AS G+ +V LLQ DVN +T G + LH+AA G ++V LL++GA
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368
Query: 401 DLRIIDSKHNTVLDLLKQFPPHAVHDISTIINPVMSYEFLVSGGGTRSVSDTDD 454
+ S T L + K+ +V D+ ++ S+ LVS S +T D
Sbjct: 369 SPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSF-VLVSDKHRMSFPETVD 421
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 158/329 (48%), Gaps = 41/329 (12%)
Query: 21 AARNGNIQVVEKILSQRAKRSG-------PL---AR----EIVELLLTNEASTNIVDTKG 66
AAR G+ +V + +L +AK + PL AR +V+LLL N A+ N+ T G
Sbjct: 54 AARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 113
Query: 67 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC 126
+PLH+AA G+V+ V LL S MTK T LH AA+YG V LLE
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQA---CMTKKGFTPLHVAAKYGKVRVAELLLERDA 170
Query: 127 DPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA----SPLHLA 182
P T L +A + L+ V L+ R S PA +PLH+A
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLL-----------PRGGSPHSPAWNGYTPLHIA 219
Query: 183 SRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGS 236
++ L+ G AN + G + LH AA GH E+V LLL+ +A+ N+ + G
Sbjct: 220 AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGL 279
Query: 237 SPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 296
+PLHL A G+V + VL+ HG V+ T+ T LH A+ YG+ +V LL+H D
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336
Query: 297 PTIRNSRHETALDLAAQYGRLETVDTLVR 325
+ + L AAQ G + V L++
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 124/254 (48%), Gaps = 30/254 (11%)
Query: 21 AARNGNIQVVEKILSQ-----RAKRSG--PL-------AREIVELLLTNEASTNIVDTKG 66
AA+ G ++V E +L + A ++G PL +IV+LLL S + G
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212
Query: 67 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC 126
+PLH+AA V++ R LL +G S N + T LH AAQ GH +V+ LL
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSA---NAESVQGVTPLHLAAQEGHAEMVALLLSKQA 269
Query: 127 DPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNG 186
+ + N T L L AQ G + D L++ H ++ A +T +PLH+AS G
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDA------TTRMGYTPLHVASHYG 322
Query: 187 HS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLH 240
+ L+ N + GYS LH AA GH +IV LLL N AS N V + G++PL
Sbjct: 323 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA 382
Query: 241 LAAWTGNVDIVRVL 254
+A G + + VL
Sbjct: 383 IAKRLGYISVTDVL 396
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 11/196 (5%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
LH A+ GH IV+ LL AS N+ + K +PLH+AA G+ ++ + LL + VN
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ---NKAKVN 74
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
KD++T LHCAA+ GHT +V LLE++ +P + + T L +AA+ G +ETV
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV----- 129
Query: 326 THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAA 384
L++ ++A T +PLH+A++ G V LL+ N +G T LH A
Sbjct: 130 --LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV 187
Query: 385 LCGKLEVVKTLLEHGA 400
L++VK LL G
Sbjct: 188 HHNNLDIVKLLLPRGG 203
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D+ GY+ LH AA NGH EIVE+LL N A N D G +PLHLAA TG++
Sbjct: 34 MANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL HG +VN D T LH AA+YGH +V LL+H D ++ +TA
Sbjct: 94 EIVEVLLKHG---ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 309 DLAAQYGRLETVDTL 323
D++ G + + L
Sbjct: 151 DISIDNGNEDLAEIL 165
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 79/153 (51%), Gaps = 17/153 (11%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSG-------PLAR-------EIVELLLTNEASTNI 61
+ LLEAAR G V +++ A + PL EIVE+LL N A N
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA 75
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
D G +PLHLAA TG+++IV VLL HG +VN D T LH AA+YGH +V L
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKHG---ADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
L+H D ++ +TA D++ G + + L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
AA G + V +L+ N A N D G +PLHLAA G+++IV VLL +G V +L
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
T LH AA GH +V LL+H D ++ T L LAA+YG LE V+ L++
Sbjct: 81 I---TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK--- 134
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 ---HGADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 166
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 177 SPLHLASRNGH------SLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+ NGH L+ G N D +G + LH AA GH EIVE+LL + A N
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D G +PLHLAA G+++IV VLL HG +VN K +TA + G+ + L
Sbjct: 109 YDNDGHTPLHLAAKYGHLEIVEVLLKHG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 39/185 (21%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
A R+G + V +L+ N A N D G +PLHLAA G+++IV VLL +G V +
Sbjct: 20 EAARAGQ--DDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 97 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
L T LH AA GH +V LL+H D ++ T L LAA+YG LE V+ L
Sbjct: 78 LTGI---TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL-- 132
Query: 157 THPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKE 216
L+ G N QD G +A + NG+++
Sbjct: 133 --------------------------------LKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 217 IVELL 221
+ E+L
Sbjct: 161 LAEIL 165
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN D T LH AA GH +V LL++ D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
T L LAA G LE V+ L++ H + AY+ + PLHLA++ GH +V
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLK-HGADVNAYDNDGHT------PLHLAAKYGHLEIVE 130
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 131 VLLKHGADVNAQDKFG 146
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D ++ T L LAA G LE V+ L++ + NA
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV----NA- 75
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
S L +PLHLA+ GH +V LL+ G DVN G T LH AA G LE+V+ LL
Sbjct: 76 --SDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Query: 397 EHGADLRIIDSKHNTVLDL 415
+HGAD+ D T D+
Sbjct: 134 KHGADVNAQDKFGKTAFDI 152
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 168
AA+ G V L+ + D ++ T L LAA G LE V+ L++ + NA
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV----NA- 75
Query: 169 AQSTLFPASPLHLASRNGH------SLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222
S L +PLHLA+ GH L+ G N D+ G++ LH AA GH EIVE+LL
Sbjct: 76 --SDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Query: 223 TNEASTNIVDTKGSSPLHLAAWTGNVDIVRVL 254
+ A N D G + ++ GN D+ +L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRI 404
+PLHLA+ NGH +V LL+ G DVN +G T LH AA G LE+V+ LL+HGAD+
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNA 108
Query: 405 IDSKHNTVLDLLKQF 419
D+ +T L L ++
Sbjct: 109 YDNDGHTPLHLAAKY 123
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L G N DS G + LH AA NGHKE+V+LLL+ A N D+ G +PLHLAA G+
Sbjct: 24 LENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHK 83
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
++V++LL G + N D +T LH AA+ GH VV LL DP +S T L
Sbjct: 84 EVVKLLLSQG---ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPL 140
Query: 309 DLAAQYGRLETVDTLVR 325
DLA ++G E V L +
Sbjct: 141 DLAREHGNEEVVKLLEK 157
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
AA NG+K+ V+ LL N A N D+ G +PLHLAA G+ ++V++LL G + N
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG---ADPNAKD 67
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
D +T LH AA+ GH VV LL DP ++S +T L LAA+ G E V L
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL----- 122
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAG 367
L Q + + +PL LA +G+ VV L + G
Sbjct: 123 -LSQGADPNTSDS-DGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 83/162 (51%), Gaps = 19/162 (11%)
Query: 9 FSVMGKDQDLLEAARNGNIQVVEKILSQRAKRSG-------PLA-------REIVELLLT 54
S +GK L+EAA NGN V+ +L A + PL +E+V+LLL+
Sbjct: 1 MSELGKR--LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLS 58
Query: 55 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 114
A N D+ G +PLHLAA G+ ++V++LL G + N D +T LH AA+ GH
Sbjct: 59 QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG---ADPNAKDSDGKTPLHLAAENGH 115
Query: 115 TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
VV LL DP +S T LDLA ++G E V L +
Sbjct: 116 KEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 88/186 (47%), Gaps = 37/186 (19%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA GN D V+ LL +G +VN D +T LH AA+ GH VV LL DP ++
Sbjct: 11 AAENGNKDRVKDLLENGA---DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
S +T L LAA+ G E V L L Q + A+ + +PLHLA+ N
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLL------LSQGADPNAKDS-DGKTPLHLAAEN------- 113
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
GHKE+V+LLL+ A N D+ G +PL LA GN ++V+
Sbjct: 114 --------------------GHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVK 153
Query: 253 VLLCHG 258
+L G
Sbjct: 154 LLEKQG 159
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA GN D V+ LL +G +VN D +T LH AA+ GH VV LL DP ++
Sbjct: 11 AAENGNKDRVKDLLENGA---DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
S +T L LAA+ G E V L L Q + A+ + +PLHLA+ NGH+ VV
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLL------LSQGADPNAKDS-DGKTPLHLAAENGHKEVVK 120
Query: 362 RLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGA 400
LL G D N + G T L A G EVVK L + G
Sbjct: 121 LLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 377 GTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
G L EAA G + VK LLE+GAD+ DS T L L
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHL 43
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L G N DS G + LH+AA NGHKEIV+LLL+ A N D+ G +PLH AA G+
Sbjct: 24 LENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHK 83
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV++LL G + N D T LH AA+ GH +V LL DP +S T L
Sbjct: 84 EIVKLLLSKG---ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPL 140
Query: 309 DLAAQYGRLETVDTLVR 325
DLA ++G E V L +
Sbjct: 141 DLAREHGNEEIVKLLEK 157
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 87/186 (46%), Gaps = 37/186 (19%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA GN D V+ LL +G + PN + D T LH AA+ GH +V LL DP ++
Sbjct: 11 AAENGNKDRVKDLLENG-ADPNAS--DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
S T L AA+ G E V L L +G
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLL----------------------------------LSKG 93
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
N +DS G + LH+AA NGHKEIV+LLL+ A N D+ G +PL LA GN +IV+
Sbjct: 94 ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVK 153
Query: 253 VLLCHG 258
+L G
Sbjct: 154 LLEKQG 159
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 10/122 (8%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLH A+ NGH L +G N +DS G + LH+AA NGHKEIV+LLL+ A N
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA 98
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D+ G +PLH AA G+ +IV++LL G + PN + D T L A ++G+ +V +L
Sbjct: 99 KDSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNTS--DSDGRTPLDLAREHGNEEIV-KL 154
Query: 291 LE 292
LE
Sbjct: 155 LE 156
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 83/193 (43%), Gaps = 44/193 (22%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
AA NG+K+ V+ LL N A N D+ G +PLH AA G+ +IV++LL G + N
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA---DPNAKD 67
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
D T LH AA+ GH +V LL DP ++S T
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRT---------------------- 105
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCG 387
PLH A+ NGH+ +V LL G D N + G T L A G
Sbjct: 106 ------------------PLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHG 147
Query: 388 KLEVVKTLLEHGA 400
E+VK L + G
Sbjct: 148 NEEIVKLLEKQGG 160
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 81/162 (50%), Gaps = 19/162 (11%)
Query: 9 FSVMGKDQDLLEAARNGNIQVVEKILSQRAKRSG-------PLA-------REIVELLLT 54
S +GK L+EAA NGN V+ +L A + PL +EIV+LLL+
Sbjct: 1 MSELGKR--LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLS 58
Query: 55 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 114
A N D+ G +PLH AA G+ +IV++LL G + N D T LH AA+ GH
Sbjct: 59 KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA---DPNAKDSDGRTPLHYAAENGH 115
Query: 115 TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
+V LL DP +S T LDLA ++G E V L +
Sbjct: 116 KEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 76/178 (42%), Gaps = 44/178 (24%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA GN D V+ LL +G + PN + D T LH AA+ GH +V LL DP ++
Sbjct: 11 AAENGNKDRVKDLLENG-ADPNAS--DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
S T PLH A+ NGH+ +V
Sbjct: 68 SDGRT----------------------------------------PLHYAAENGHKEIVK 87
Query: 362 RLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQ 418
LL G D N + + G T LH AA G E+VK LL GAD DS T LDL ++
Sbjct: 88 LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLARE 145
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 81/150 (54%), Gaps = 9/150 (6%)
Query: 182 ASRNGHSLR------RGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKG 235
A+ NG+ R G N DS G + LHHAA NGHKE+V+LL++ A N D+ G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 236 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC 295
+PLH AA G+ ++V++L+ G +VN D T LH AA+ GH VV L+
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKG---ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 296 DPTIRNSRHETALDLAAQYGRLETVDTLVR 325
D +S T LDLA ++G E V L +
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 85/186 (45%), Gaps = 37/186 (19%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA GN D V+ L+ +G +VN D T LH AA+ GH VV L+ D ++
Sbjct: 11 AAENGNKDRVKDLIENGA---DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
S T L AA+ G E V L+ +G
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLI----------------------------------SKG 93
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
N +DS G + LHHAA NGHKE+V+LL++ A N D+ G +PL LA GN ++V+
Sbjct: 94 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVK 153
Query: 253 VLLCHG 258
+L G
Sbjct: 154 LLEKQG 159
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 10/122 (8%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLH A+ NGH + +G N +DS G + LHHAA NGHKE+V+LL++ A N
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA 98
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D+ G +PLH AA G+ ++V++L+ G +VN D T L A ++G+ VV +L
Sbjct: 99 KDSDGRTPLHHAAENGHKEVVKLLISKG---ADVNTSDSDGRTPLDLAREHGNEEVV-KL 154
Query: 291 LE 292
LE
Sbjct: 155 LE 156
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 86/193 (44%), Gaps = 44/193 (22%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
AA NG+K+ V+ L+ N A N D+ G +PLH AA G+ ++V++L+ G +VN
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA---DVNAKD 67
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
D T LH AA+ GH VV L+ D ++S GR
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-----------DGR------------ 104
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCG 387
+PLH A+ NGH+ VV L+ G DVN + G T L A G
Sbjct: 105 -----------------TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHG 147
Query: 388 KLEVVKTLLEHGA 400
EVVK L + G
Sbjct: 148 NEEVVKLLEKQGG 160
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 19/162 (11%)
Query: 9 FSVMGKDQDLLEAARNGNIQVVEKILSQRAKRSG-------PLA-------REIVELLLT 54
S +GK L+EAA NGN V+ ++ A + PL +E+V+LL++
Sbjct: 1 MSELGKR--LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS 58
Query: 55 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 114
A N D+ G +PLH AA G+ ++V++L+ G +VN D T LH AA+ GH
Sbjct: 59 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA---DVNAKDSDGRTPLHHAAENGH 115
Query: 115 TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
VV L+ D +S T LDLA ++G E V L +
Sbjct: 116 KEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 78/178 (43%), Gaps = 44/178 (24%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA GN D V+ L+ +G +VN D T LH AA+ GH VV L+ D ++
Sbjct: 11 AAENGNKDRVKDLIENGA---DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
S GR +PLH A+ NGH+ VV
Sbjct: 68 S-----------DGR-----------------------------TPLHHAAENGHKEVVK 87
Query: 362 RLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQ 418
L+ G DVN + + G T LH AA G EVVK L+ GAD+ DS T LDL ++
Sbjct: 88 LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLARE 145
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N +D+SG++ LH AA NGH EIVE+LL N A N VD G +PL LAA G++
Sbjct: 34 MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL +G V N N M + T LH AA +GH +V LL++ D ++ +TA
Sbjct: 94 EIVEVLLKNGADV-NANDM--EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Query: 309 DLAAQYGRLETVDTLVR 325
D++ G + + L +
Sbjct: 151 DISIDNGNEDLAEILQK 167
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 177 SPLHLASRNGH------SLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+ NGH L+ G N D +G + L AAL GH EIVE+LL N A N
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D +G +PLHLAA G+++IV VLL +G +VN K +TA + G+ + L
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEVLLKNG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G +PLHLAA+ G+++IV VLL +G +VN
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG---ADVN 74
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
+ T L AA +GH +V LL++ D + T L LAA +G LE V+ L++
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 326 THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 N------GADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 166
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 37/173 (21%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
V +L+ N A N D G +PLHLAA+ G+++IV VLL +G +VN + T L
Sbjct: 30 VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG---ADVNAVDHAGMTPLRL 86
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 168
AA +GH +V LL++ D + T L LAA +G LE V+ L
Sbjct: 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL-------------- 132
Query: 169 AQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
L+ G N QD G +A + NG++++ E+L
Sbjct: 133 --------------------LKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 78/155 (50%), Gaps = 17/155 (10%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSGPLAR--------------EIVELLLTNEASTNI 61
+ LLEAAR G V +++ A + A EIVE+LL N A N
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
VD G +PL LAA G+++IV VLL +G V N N M + T LH AA +GH +V L
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDM--EGHTPLHLAAMFGHLEIVEVL 132
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
L++ D ++ +TA D++ G + + L +
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D ++ T L LAA G LE V+ L++ + NA
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV----NAV 76
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
+ + +PL LA+ GH +V LL+ G DVN G T LH AA+ G LE+V+ LL
Sbjct: 77 DHAGM---TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 397 EHGADLRIIDSKHNTVLDL 415
++GAD+ D T D+
Sbjct: 134 KNGADVNAQDKFGKTAFDI 152
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 66/136 (48%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN T LH AA GH +V LL++ D +
Sbjct: 21 AARAGRDDEVRILMANGA---DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
T L LAA +G LE V+ L++ + A + + PLHLA+ GH +V
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHT------PLHLAAMFGHLEIVE 130
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 131 VLLKNGADVNAQDKFG 146
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVN-IRTASGTALHEAALCGKLEVVKTLLEHGADLRI 404
+PLHLA+ NGH +V LL+ G DVN + A T L AAL G LE+V+ LL++GAD+
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA 108
Query: 405 IDSKHNTVLDLLKQF 419
D + +T L L F
Sbjct: 109 NDMEGHTPLHLAAMF 123
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKH 409
A+R G V L+ G DVN ASG T LH AA G LE+V+ LL++GAD+ +D
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 410 NTVLDLLKQF 419
T L L F
Sbjct: 81 MTPLRLAALF 90
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 80/150 (53%), Gaps = 9/150 (6%)
Query: 182 ASRNGHSLR------RGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKG 235
A+ NG+ R G N DS G + LH+AA GHKEIV+LL++ A N D+ G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 236 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC 295
+PLH AA G+ +IV++L+ G +VN D T LH AA+ GH +V L+
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKG---ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 296 DPTIRNSRHETALDLAAQYGRLETVDTLVR 325
D +S T LDLA ++G E V L +
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 84/186 (45%), Gaps = 37/186 (19%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA GN D V+ L+ +G +VN D T LH AA+ GH +V L+ D ++
Sbjct: 11 AAENGNKDRVKDLIENGA---DVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
S T L AA+ G E V L+ +G
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLI----------------------------------SKG 93
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
N +DS G + LH+AA GHKEIV+LL++ A N D+ G +PL LA GN +IV+
Sbjct: 94 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVK 153
Query: 253 VLLCHG 258
+L G
Sbjct: 154 LLEKQG 159
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 10/122 (8%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLH A++ GH + +G N +DS G + LH+AA GHKEIV+LL++ A N
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA 98
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D+ G +PLH AA G+ +IV++L+ G +VN D T L A ++G+ +V +L
Sbjct: 99 KDSDGRTPLHYAAKEGHKEIVKLLISKG---ADVNTSDSDGRTPLDLAREHGNEEIV-KL 154
Query: 291 LE 292
LE
Sbjct: 155 LE 156
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 84/193 (43%), Gaps = 44/193 (22%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
AA NG+K+ V+ L+ N A N D+ G +PLH AA G+ +IV++L+ G +VN
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA---DVNAKD 67
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
D T LH AA+ GH +V L+ D ++S T
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRT---------------------- 105
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCG 387
PLH A++ GH+ +V L+ G DVN + G T L A G
Sbjct: 106 ------------------PLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHG 147
Query: 388 KLEVVKTLLEHGA 400
E+VK L + G
Sbjct: 148 NEEIVKLLEKQGG 160
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 19/162 (11%)
Query: 9 FSVMGKDQDLLEAARNGNIQVVEKILSQRAKRSG-------PLA-------REIVELLLT 54
S +GK L+EAA NGN V+ ++ A + PL +EIV+LL++
Sbjct: 1 MSELGKR--LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLIS 58
Query: 55 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 114
A N D+ G +PLH AA G+ +IV++L+ G +VN D T LH AA+ GH
Sbjct: 59 KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA---DVNAKDSDGRTPLHYAAKEGH 115
Query: 115 TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
+V L+ D +S T LDLA ++G E V L +
Sbjct: 116 KEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 76/178 (42%), Gaps = 44/178 (24%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA GN D V+ L+ +G +VN D T LH AA+ GH +V L+ D ++
Sbjct: 11 AAENGNKDRVKDLIENGA---DVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
S T PLH A++ GH+ +V
Sbjct: 68 SDGRT----------------------------------------PLHYAAKEGHKEIVK 87
Query: 362 RLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQ 418
L+ G DVN + + G T LH AA G E+VK L+ GAD+ DS T LDL ++
Sbjct: 88 LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLARE 145
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D+SG + LH AA GH EIVE+LL + A N +D GS+PLHLAA G++
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL HG +VN + +T LH AA GH +V LL+H D ++ +TA
Sbjct: 94 EIVEVLLKHG---ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 309 DLAAQYGRLETVDTLVR 325
D++ G + + L +
Sbjct: 151 DISIDNGNEDLAEILQK 167
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
AA G + V +L+ N A N D G +PLHLAA G+++IV VLL HG V +++
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX- 79
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
T LH AA GH +V LL+H D ++ +T L LAA G LE V+ L++
Sbjct: 80 --GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK--- 134
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 ---HGADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 166
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSGPLAR--------------EIVELLLTNEASTNI 61
+ LLEAAR G V +++ A + A EIVE+LL + A N
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA 75
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
+D GS+PLHLAA G+++IV VLL HG +VN + +T LH AA GH +V L
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHG---ADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
L+H D ++ +TA D++ G + + L +
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D ++ T L LAA YG LE V+ L++ H + A +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAID-- 77
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVN-IRTASGTALHEAALCGKLEVVKTLL 396
+ ++PLHLA+ GH +V LL+ G DVN + T T LH AA+ G LE+V+ LL
Sbjct: 78 ----IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 397 EHGADLRIIDSKHNTVLDL 415
+HGAD+ D T D+
Sbjct: 134 KHGADVNAQDKFGKTAFDI 152
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 77/182 (42%), Gaps = 37/182 (20%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G D VR+L+ +G +VN T LH AA YGH +V LL+H D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
T L LAA G LE V+ L++ G
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLK----------------------------------HG 103
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
N D+ G + LH AA+ GH EIVE+LL + A N D G + ++ GN D+
Sbjct: 104 ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 253 VL 254
+L
Sbjct: 164 IL 165
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN T LH AA YGH +V LL+H D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
T L LAA G LE V+ L++ H + A + + +PLHLA+ GH +V
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDT------WGDTPLHLAAIMGHLEIVE 130
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 131 VLLKHGADVNAQDKFG 146
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D+SG + LH AA GH EIVE+LL + A N +D GS+PLHLAA G++
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL HG +VN + +T LH AA GH +V LL+H D ++ +TA
Sbjct: 94 EIVEVLLKHG---ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 309 DLAAQYGRLETVDTLVR 325
D++ G + + L +
Sbjct: 151 DISIDNGNEDLAEILQK 167
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 11/157 (7%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
AA G + V +L+ N A N D G +PLHLAA G+++IV VLL HG V +++M
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM- 79
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
T LH AA GH +V LL+H D ++ +T L LAA G LE V+ L++
Sbjct: 80 --GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK--- 134
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 ---HGADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 166
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSGPLAR--------------EIVELLLTNEASTNI 61
+ LLEAAR G V +++ A + A EIVE+LL + A N
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA 75
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
+D GS+PLHLAA G+++IV VLL HG +VN + +T LH AA GH +V L
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLLKHG---ADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
L+H D ++ +TA D++ G + + L +
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D ++ T L LAA YG LE V+ L++ H + A +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAID-- 77
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVN-IRTASGTALHEAALCGKLEVVKTLL 396
+ ++PLHLA+ GH +V LL+ G DVN + T T LH AA+ G LE+V+ LL
Sbjct: 78 ----IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 397 EHGADLRIIDSKHNTVLDL 415
+HGAD+ D T D+
Sbjct: 134 KHGADVNAQDKFGKTAFDI 152
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 77/182 (42%), Gaps = 37/182 (20%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G D VR+L+ +G +VN T LH AA YGH +V LL+H D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
T L LAA G LE V+ L++ G
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLK----------------------------------HG 103
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
N D+ G + LH AA+ GH EIVE+LL + A N D G + ++ GN D+
Sbjct: 104 ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 253 VL 254
+L
Sbjct: 164 IL 165
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN T LH AA YGH +V LL+H D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
T L LAA G LE V+ L++ H + A + + +PLHLA+ GH +V
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDT------WGDTPLHLAAIMGHLEIVE 130
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 131 VLLKHGADVNAQDKFG 146
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D++G + LH AA +GH EIVE+LL + A + D G +PLHLAA+ G++
Sbjct: 34 MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL +G +VN M D T LH AA++G+ +V LL+H D ++ +TA
Sbjct: 94 EIVEVLLKNG---ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 309 DLAAQYGRLETVDTLVR 325
D++ G + + L +
Sbjct: 151 DISIDNGNEDLAEILQK 167
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 11/160 (6%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G++PLHLAA++G+++IV VLL HG V +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
+ T LH AA +GH +V LL++ D +S T L LAA++G LE V+ L++
Sbjct: 78 VF---GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 326 THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 ------HGADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 166
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 39/185 (21%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
A R+G + V +L+ N A N D G++PLHLAA++G+++IV VLL HG V +
Sbjct: 20 EAARAGQ--DDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 97 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
+ T LH AA +GH +V LL++ D +S T L LAA++G LE V+ L
Sbjct: 78 VF---GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVL-- 132
Query: 157 THPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKE 216
L+ G N QD G +A + NG+++
Sbjct: 133 --------------------------------LKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 217 IVELL 221
+ E+L
Sbjct: 161 LAEIL 165
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+ +GH L+ G + D GY+ LH AA GH EIVE+LL N A N
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
+D+ G +PLHLAA G ++IV VLL HG +VN K +TA + G+ + L
Sbjct: 109 MDSDGMTPLHLAAKWGYLEIVEVLLKHG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 21/155 (13%)
Query: 18 LLEAARNGNIQVVEKILSQRAK----------------RSGPLAREIVELLLTNEASTNI 61
LLEAAR G V +++ A SG L EIVE+LL + A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHL--EIVEVLLKHGADVDA 75
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
D G +PLHLAA+ G+++IV VLL +G +VN M D T LH AA++G+ +V L
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKNGA---DVNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
L+H D ++ +TA D++ G + + L +
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D ++ T L LAA G LE V+ L++ H + A
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLK-HGADVDA---- 75
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
S +F +PLHLA+ GH +V LL+ G DVN + G T LH AA G LE+V+ LL
Sbjct: 76 --SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 397 EHGADLRIIDSKHNTVLDL 415
+HGAD+ D T D+
Sbjct: 134 KHGADVNAQDKFGKTAFDI 152
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 168
AA+ G V L+ + D ++ T L LAA G LE V+ L++ H + A
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLK-HGADVDA---- 75
Query: 169 AQSTLFPASPLHLASRNGH------SLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222
S +F +PLHLA+ GH L+ G N DS G + LH AA G+ EIVE+LL
Sbjct: 76 --SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 223 TNEASTNIVDTKGSSPLHLAAWTGNVDIVRVL 254
+ A N D G + ++ GN D+ +L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN T LH AA GH +V LL+H D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
T L LAA +G LE V+ L++ + NA + +PLHLA++ G+ +V
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADV----NAMDSDGM---TPLHLAAKWGYLEIVE 130
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 131 VLLKHGADVNAQDKFG 146
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 146/322 (45%), Gaps = 55/322 (17%)
Query: 14 KDQDLLEAARNGNIQVVEKILS--------QRAKRSGPL-------AREIVELLLTNEAS 58
K +LLEAAR+GN + + +L+ ++S PL IV+LLL + A
Sbjct: 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 59 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVV 118
+ D G PLH A G+ ++ +LL HG V N M T LH AA V
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV---NAMDLWQFTPLHEAASKNRVEVC 140
Query: 119 SQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN----ARAQSTLF 174
S LL H DPT+ N ++A+D+A E + + H L+QA A+ + TL
Sbjct: 141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH-SLLQAAREADLAKVKKTLA 199
Query: 175 --------PAS---PLHLASRNGHS---------LRRGPGANVQDSSGYSALHHAALNGH 214
P S LH A + H LR+G N ++ + LH AA H
Sbjct: 200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH 259
Query: 215 KEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG--PSVPNVNLMTKDNE 272
+++E+L + A N +D+ G + LH AA G++ R+LL +G PS+ ++ T
Sbjct: 260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT---- 315
Query: 273 TALHCAAQYGHTPVVSQLLEHS 294
AAQ G+ V Q+L S
Sbjct: 316 -----AAQMGNE-AVQQILSES 331
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 117/260 (45%), Gaps = 39/260 (15%)
Query: 176 ASPLHLASRNGHS--------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAS 227
++PLHLA+ G++ L+ G + +D G LH+A GH E+ ELLL + A
Sbjct: 59 STPLHLAA--GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Query: 228 TNIVDTKGSSPLHLAAWTGNVDIVRVLL----------CHGPSVPNV--------NLMTK 269
N +D +PLH AA V++ +LL CHG S ++ L +
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE 176
Query: 270 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY---GRLETVDTLVRT 326
+L AA+ V + L + HETAL A R + + L+R
Sbjct: 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR- 235
Query: 327 HPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAAL 385
+ N ++ F +PLH+A+ H V+ L + G +N + G TALH AAL
Sbjct: 236 -----KGANVNEKNKDF-MTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289
Query: 386 CGKLEVVKTLLEHGADLRII 405
G L+ + LL +G+D II
Sbjct: 290 AGHLQTCRLLLSYGSDPSII 309
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 301 NSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVV 360
+ R T L LAA Y R+ V L++ + +A+ + L P LH A GH V
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADV----HAKDKGGLVP---LHNACSYGHYEVT 107
Query: 361 ARLLQAGLDVN-IRTASGTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
LL+ G VN + T LHEAA ++EV LL HGAD +++ + +D+
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Query: 192 GPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV 251
G N +D GY+ LH AA GH EIVE+LL A N D G +PLHLAA G+++IV
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 84
Query: 252 RVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 311
VLL G +VN KD T LH AA+ GH +V LL+ D ++ +T DLA
Sbjct: 85 EVLLKAG---ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
Query: 312 AQYGRLETVDTLVRT 326
+ G + + L +
Sbjct: 142 IREGHEDIAEVLQKA 156
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 10/161 (6%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G +PLHLAA G+++IV VLL G +VN
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVN 62
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
KD T LH AA+ GH +V LL+ D ++ T L LAA+ G LE V+ L++
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 326 THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQA 366
+ AQ F +P LA R GH + L +A
Sbjct: 123 A------GADVNAQDK-FGKTPFDLAIREGHEDIAEVLQKA 156
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+R GH L+ G N +D GY+ LH AA GH EIVE+LL A N
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D G +PLHLAA G+++IV VLL G +VN K +T A + GH + L
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 73/137 (53%), Gaps = 10/137 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN KD T LH AA+ GH +V LL+ D ++
Sbjct: 9 AARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
T L LAA+ G LE V+ L++ + NA+ + +PLHLA+R GH +V
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADV----NAKDKDGY---TPLHLAAREGHLEIVE 118
Query: 362 RLLQAGLDVNIRTASGT 378
LL+AG DVN + G
Sbjct: 119 VLLKAGADVNAQDKFGK 135
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 82/182 (45%), Gaps = 37/182 (20%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G D VR+L+ +G +VN KD T LH AA+ GH +V LL+ D ++
Sbjct: 9 AARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
T L LAA+ G LE V+ L++ + NA+ + +PLHLA+R GH
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADV----NAKDKDGY---TPLHLAAREGHL---- 114
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
EIVE+LL A N D G +P LA G+ DI
Sbjct: 115 -----------------------EIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAE 151
Query: 253 VL 254
VL
Sbjct: 152 VL 153
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 76/158 (48%), Gaps = 21/158 (13%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAK----------------RSGPLAREIVELLLTNEAST 59
+ LLEAAR G V +++ A R G L EIVE+LL A
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHL--EIVEVLLKAGADV 61
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
N D G +PLHLAA G+++IV VLL G +VN KD T LH AA+ GH +V
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 157
LL+ D ++ +T DLA + G + + L +
Sbjct: 119 VLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D ++ T L LAA+ G LE V+ L++ + NA+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV----NAK 64
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
+ +PLHLA+R GH +V LL+AG DVN + G T LH AA G LE+V+ LL
Sbjct: 65 DKDGY---TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 397 EHGADLRIIDSKHNTVLDL 415
+ GAD+ D T DL
Sbjct: 122 KAGADVNAQDKFGKTPFDL 140
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 73/122 (59%), Gaps = 9/122 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+RNGH L G N +D +G + LH AA NGH E+V+LLL A N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D G +PLHLAA G++++V++LL G +VN K+ T LH AA+ GH VV L
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 291 LE 292
LE
Sbjct: 121 LE 122
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
+G + LH AA NGH E+V+LLL A N D G +PLHLAA G++++V++LL G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-- 58
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 320
+VN K+ T LH AA+ GH VV LLE D ++ T L LAA+ G LE V
Sbjct: 59 -ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 321 DTLV 324
L+
Sbjct: 118 KLLL 121
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 83/167 (49%), Gaps = 44/167 (26%)
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
G +PLHLAA G++++V++LL G +VN K+ T LH AA+ GH VV LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 295 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 354
D ++ + GR +PLHLA+RN
Sbjct: 59 ADVNAKD-----------KNGR-----------------------------TPLHLAARN 78
Query: 355 GHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGA 400
GH VV LL+AG DVN + +G T LH AA G LEVVK LLE GA
Sbjct: 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 38 AKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNL 97
A R+G L E+V+LLL A N D G +PLHLAA G++++V++LL G +VN
Sbjct: 9 AARNGHL--EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA---DVNA 63
Query: 98 MTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
K+ T LH AA+ GH VV LLE D ++ T L LAA+ G LE V L+
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 69/122 (56%), Gaps = 10/122 (8%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
G +PLHLAA G++++V++LL G +VN K+ T LH AA+ GH VV LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
D ++ T L LAA+ G LE V L+ + NA+ ++ +PLHLA+RN
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV----NAKDKNG---RTPLHLAARN 111
Query: 186 GH 187
GH
Sbjct: 112 GH 113
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 68/128 (53%), Gaps = 13/128 (10%)
Query: 101 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 160
+ T LH AA+ GH VV LLE D ++ T L LAA+ G LE V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 161 LIQAYNARAQSTLFPASPLHLASRNGH------SLRRGPGANVQDSSGYSALHHAALNGH 214
+ NA+ ++ +PLHLA+RNGH L G N +D +G + LH AA NGH
Sbjct: 61 V----NAKDKNG---RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 113
Query: 215 KEIVELLL 222
E+V+LLL
Sbjct: 114 LEVVKLLL 121
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 64/111 (57%), Gaps = 8/111 (7%)
Query: 306 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
T L LAA+ G LE V L+ + NA+ ++ +PLHLA+RNGH VV LL+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV----NAKDKNG---RTPLHLAARNGHLEVVKLLLE 56
Query: 366 AGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
AG DVN + +G T LH AA G LEVVK LLE GAD+ D T L L
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 21/119 (17%)
Query: 21 AARNGNIQVVEKILS----------------QRAKRSGPLAREIVELLLTNEASTNIVDT 64
AARNG+++VV+ +L A R+G L E+V+LLL A N D
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL--EVVKLLLEAGADVNAKDK 66
Query: 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 123
G +PLHLAA G++++V++LL G +VN K+ T LH AA+ GH VV LLE
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G AN D G + LH AA GH EIVE+LL N A N VDT G++PLHLAA G++
Sbjct: 22 MANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHL 81
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL +G +VN T L+ AA +GH +V LL+H D ++ +TA
Sbjct: 82 EIVEVLLKYG---ADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
Query: 309 DLAAQYGRLETVDTL 323
D++ G + + L
Sbjct: 139 DISIDIGNEDLAEIL 153
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 79/153 (51%), Gaps = 17/153 (11%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSG-------PLAR-------EIVELLLTNEASTNI 61
+ LLEAAR G V +++ A + PL EIVE+LL N A N
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA 63
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
VDT G++PLHLAA G+++IV VLL +G +VN T L+ AA +GH +V L
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYG---ADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
L+H D ++ +TA D++ G + + L
Sbjct: 121 LKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G +PLH+AA G+++IV VLL +G +VN
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNG---ADVN 62
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
+ + T LH AA GH +V LL++ D +++ T L LAA +G LE V+ L++
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
A R+G + V +L+ N A N D G +PLH+AA G+++IV VLL +G +VN
Sbjct: 8 EAARAGQ--DDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA---DVN 62
Query: 97 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
+ + T LH AA GH +V LL++ D +++ T L LAA +G LE V+ L++
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D + T L +AA G LE V+ L+R + A +
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD-VNAVDTN 67
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
+ PLHLA+ GH +V LL+ G DVN + A+G T L+ AA G LE+V+ LL
Sbjct: 68 GTT------PLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 397 EHGADLRIIDSKHNTVLDL 415
+HGAD+ D T D+
Sbjct: 122 KHGADVNAQDKFGKTAFDI 140
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G + N T LH AA GH +V LL + D +
Sbjct: 9 AARAGQDDEVRILMANGA---DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
+ T L LAA G LE V+ L++ + NA+ + + +PL+LA+ GH +V
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADV----NAKDATGI---TPLYLAAYWGHLEIVE 118
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 119 VLLKHGADVNAQDKFG 134
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N +D GY+ LH AA GH EIVE+LL A N D G +PLHLAA G++
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 81
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL G +VN KD T LH AA+ GH +V LL+ D ++ +T
Sbjct: 82 EIVEVLLKAG---ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPF 138
Query: 309 DLAAQYGRLETVDTLVRT 326
DLA G + + L +
Sbjct: 139 DLAIDNGNEDIAEVLQKA 156
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 10/161 (6%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G +PLHLAA G+++IV VLL G +VN
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVN 62
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
KD T LH AA+ GH +V LL+ D ++ T L LAA+ G LE V+ L++
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 326 THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQA 366
+ AQ F +P LA NG+ + L +A
Sbjct: 123 A------GADVNAQDK-FGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 64/120 (53%), Gaps = 9/120 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+R GH L+ G N +D GY+ LH AA GH EIVE+LL A N
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D G +PLHLAA G+++IV VLL G +VN K +T A G+ + L
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 82/182 (45%), Gaps = 37/182 (20%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G D VR+L+ +G +VN KD T LH AA+ GH +V LL+ D ++
Sbjct: 9 AARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
T L LAA+ G LE V+ L++ + NA+ + +PLHLA+R GH
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADV----NAKDKDGY---TPLHLAAREGHL---- 114
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
EIVE+LL A N D G +P LA GN DI
Sbjct: 115 -----------------------EIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAE 151
Query: 253 VL 254
VL
Sbjct: 152 VL 153
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 10/159 (6%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN KD T LH AA+ GH +V LL+ D ++
Sbjct: 9 AARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
T L LAA+ G LE V+ L++ + NA+ + +PLHLA+R GH +V
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADV----NAKDKDGY---TPLHLAAREGHLEIVE 118
Query: 362 RLLQAGLDVNIRTASGTALHEAALCGKLEVVKTLLEHGA 400
LL+AG DVN + G + A+ E + +L+ A
Sbjct: 119 VLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D ++ T L LAA+ G LE V+ L++ + NA+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV----NAK 64
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
+ +PLHLA+R GH +V LL+AG DVN + G T LH AA G LE+V+ LL
Sbjct: 65 DKDGY---TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 397 EHGADLRIIDSKHNTVLDL 415
+ GAD+ D T DL
Sbjct: 122 KAGADVNAQDKFGKTPFDL 140
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 74/156 (47%), Gaps = 21/156 (13%)
Query: 18 LLEAARNGNIQVVEKILSQRAK----------------RSGPLAREIVELLLTNEASTNI 61
LLEAAR G V +++ A R G L EIVE+LL A N
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHL--EIVEVLLKAGADVNA 63
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
D G +PLHLAA G+++IV VLL G +VN KD T LH AA+ GH +V L
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 157
L+ D ++ +T DLA G + + L +
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Query: 192 GPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV 251
G N +D GY+ LH AA GH EIVE+LL A N D G +PLHLAA G+++IV
Sbjct: 37 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 96
Query: 252 RVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 311
VLL G +VN KD T LH AA+ GH +V LL+ D ++ +TA D++
Sbjct: 97 EVLLKAG---ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 153
Query: 312 AQYGRLETVDTL 323
G + + L
Sbjct: 154 IDNGNEDLAEIL 165
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+R GH L+ G N +D GY+ LH AA GH EIVE+LL A N
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D G +PLHLAA G+++IV VLL G +VN K +TA + G+ + L
Sbjct: 109 KDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G +PLHLAA G+++IV VLL G +VN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVN 74
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
KD T LH AA+ GH +V LL+ D ++ T L LAA+ G LE V+ L++
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 326 THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 A------GADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 166
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN KD T LH AA+ GH +V LL+ D ++
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
T L LAA+ G LE V+ L++ + NA+ + +PLHLA+R GH +V
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADV----NAKDKDGY---TPLHLAAREGHLEIVE 130
Query: 362 RLLQAGLDVNIRTASG 377
LL+AG DVN + G
Sbjct: 131 VLLKAGADVNAQDKFG 146
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 16/155 (10%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G D VR+L+ +G +VN KD T LH AA+ GH +V LL+ D ++
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH----- 187
T L LAA+ G LE V+ L++ + NA+ + +PLHLA+R GH
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADV----NAKDKDGY---TPLHLAAREGHLEIVE 130
Query: 188 -SLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
L+ G N QD G +A + NG++++ E+L
Sbjct: 131 VLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D ++ T L LAA+ G LE V+ L++ + NA+
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV----NAK 76
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
+ +PLHLA+R GH +V LL+AG DVN + G T LH AA G LE+V+ LL
Sbjct: 77 DKDGY---TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 397 EHGADLRIIDSKHNTVLDL 415
+ GAD+ D T D+
Sbjct: 134 KAGADVNAQDKFGKTAFDI 152
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 75/155 (48%), Gaps = 21/155 (13%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAK----------------RSGPLAREIVELLLTNEAST 59
+ LLEAAR G V +++ A R G L EIVE+LL A
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHL--EIVEVLLKAGADV 73
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
N D G +PLHLAA G+++IV VLL G +VN KD T LH AA+ GH +V
Sbjct: 74 NAKDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAKDKDGYTPLHLAAREGHLEIVE 130
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
LL+ D ++ +TA D++ G + + L
Sbjct: 131 VLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D +G + LH AA NG EIVE+LL N A N D+ G +PLHLAA+ G++
Sbjct: 26 MANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHL 85
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL HG +VN + T LH AA G +V LL+H D +++ TA
Sbjct: 86 EIVEVLLKHG---ADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAF 142
Query: 309 DLAAQYGRLETVDTL 323
D++ G+ + + L
Sbjct: 143 DISINQGQEDLAEIL 157
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 6/91 (6%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+ NG L+ G N DS+G + LH AA +GH EIVE+LL + A N
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNA 100
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
D G +PLHLAA +G ++IV VLL HG V
Sbjct: 101 YDRAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
EIVE+LL N A N D+ G +PLHLAA+ G+++IV VLL HG +VN + T L
Sbjct: 53 EIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHG---ADVNAYDRAGWTPL 109
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
H AA G +V LL+H D +++ TA D++ G+ + + L
Sbjct: 110 HLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G +PLHLAA G ++IV VLL +G +VN
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG---ADVN 66
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
T LH AA GH +V LL+H D + T L LAA G+LE V+ L++
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA G V L+ + D + T L LAA G+LE V+ L++ + NA
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV----NAS 68
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
+ + +PLHLA+ +GH +V LL+ G DVN +G T LH AAL G+LE+V+ LL
Sbjct: 69 DSAGI---TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLL 125
Query: 397 EHGADLRIIDSKHNTVLDL 415
+HGAD+ D+ T D+
Sbjct: 126 KHGADVNAQDALGLTAFDI 144
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
V +L+ N A N D G +PLHLAA G ++IV VLL +G +VN T LH
Sbjct: 22 VRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG---ADVNASDSAGITPLHL 78
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
AA GH +V LL+H D + T L LAA G+LE V+ L++
Sbjct: 79 AAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN + T LH AA G +V LL++ D +
Sbjct: 13 AAAAGQDDEVRILMANGA---DVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
S T L LAA G LE V+ L++ H + AY+ RA T PLHLA+ +G +V
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLK-HGADVNAYD-RAGWT-----PLHLAALSGQLEIVE 122
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + A G
Sbjct: 123 VLLKHGADVNAQDALG 138
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D G++ LH AA GH EIVE+LL N A N DT GS+PLHLAA G++
Sbjct: 34 MANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL +G +VN + T LH AA GH +V LL++ D ++ +TA
Sbjct: 94 EIVEVLLKNG---ADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 309 DLAAQYGRLETVDTLVR 325
D++ G + + L +
Sbjct: 151 DISINNGNEDLAEILQK 167
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G +PLHLAA+ G+++IV VLL +G +VN
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG---ADVN 74
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
T LH AA +GH +V LL++ D ++ T L LAA G LE V+ L++
Sbjct: 75 AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 326 THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 ------YGADVNAQDK-FGKTAFDISINNGNED-LAEILQ 166
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 37/173 (21%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
V +L+ N A N D G +PLHLAA+ G+++IV VLL +G +VN T LH
Sbjct: 30 VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA---DVNAYDTLGSTPLHL 86
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 168
AA +GH +V LL++ D ++ T L LAA G LE V+ L
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL-------------- 132
Query: 169 AQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
L+ G N QD G +A + NG++++ E+L
Sbjct: 133 --------------------LKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSG-------PLAR-------EIVELLLTNEASTNI 61
+ LLEAAR G V +++ A + PL EIVE+LL N A N
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA 75
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
DT GS+PLHLAA G+++IV VLL +G +VN + T LH AA GH +V L
Sbjct: 76 YDTLGSTPLHLAAHFGHLEIVEVLLKNG---ADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
L++ D ++ +TA D++ G + + L +
Sbjct: 133 LKYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G V +++ T LH AA +GH +V LL++ D +
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVV---GWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
+ T L LAA +G LE V+ L++ + NA+ + + +PLHLA+ GH +V
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADV----NAKDDNGI---TPLHLAANRGHLEIVE 130
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 131 VLLKYGADVNAQDKFG 146
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D + T L LAA +G LE V+ L++ + AY+
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDT- 78
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
++PLHLA+ GH +V LL+ G DVN + +G T LH AA G LE+V+ LL
Sbjct: 79 -----LGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLL 133
Query: 397 EHGADLRIIDSKHNTVLDL 415
++GAD+ D T D+
Sbjct: 134 KYGADVNAQDKFGKTAFDI 152
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKH 409
A+R G V L+ G DVN G T LH AA G LE+V+ LL++GAD+ D+
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 410 NTVLDLLKQF 419
+T L L F
Sbjct: 81 STPLHLAAHF 90
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N +D SG + LH AA+ GH EIVE+LL + A N D G +PLHLAA G++
Sbjct: 34 MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL +G +VN T LH AA GH +V LL++ D ++ +TA
Sbjct: 94 EIVEVLLKNG---ADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 309 DLAAQYGRLETVDTLVR 325
D++ G + + L +
Sbjct: 151 DISIDNGNEDLAEILQK 167
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G +PLHLAA G+++IV VLL HG +VN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG---ADVN 74
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
K +T LH AA YGH +V LL++ D ++ T L LAA G LE V+ L++
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 326 THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 ------YGADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 166
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 84/185 (45%), Gaps = 39/185 (21%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
A R+G + V +L+ N A N D G +PLHLAA G+++IV VLL HG +VN
Sbjct: 20 EAARAGQ--DDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG---ADVN 74
Query: 97 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
K +T LH AA YGH +V LL++ D ++ T L LAA G LE V+ L
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL-- 132
Query: 157 THPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKE 216
L+ G N QD G +A + NG+++
Sbjct: 133 --------------------------------LKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 217 IVELL 221
+ E+L
Sbjct: 161 LAEIL 165
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+ GH L+ G N D G + LH AAL GH EIVE+LL N A N
Sbjct: 49 TPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
DT G +PLHLAA G+++IV VLL +G +VN K +TA + G+ + L
Sbjct: 109 TDTYGFTPLHLAADAGHLEIVEVLLKYG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN +T LH AA GH +V LL+H D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
+T L LAA YG LE V+ L++ + A T + +PLHLA+ GH +V
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKN------GADVNATDT-YGFTPLHLAADAGHLEIVE 130
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 131 VLLKYGADVNAQDKFG 146
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 70/139 (50%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D + +T L LAA G LE V+ L++ H + A +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK-HGADVNAADKM 79
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
+ PLHLA+ GH +V LL+ G DVN G T LH AA G LE+V+ LL
Sbjct: 80 GDT------PLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLL 133
Query: 397 EHGADLRIIDSKHNTVLDL 415
++GAD+ D T D+
Sbjct: 134 KYGADVNAQDKFGKTAFDI 152
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D++G + LH AA++GH EIVE+LL + A + D G +PLHLAA TG++
Sbjct: 34 IANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL +G +VN T LH AA GH +V LL++ D ++ +TA
Sbjct: 94 EIVEVLLKYG---ADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 309 DLAAQYG 315
D++ G
Sbjct: 151 DISIDNG 157
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N VD G +PLHLAA +G+++IV VLL HG V +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
+ T LH AA GH +V LL++ D + T L LAA G LE V+ L++
Sbjct: 78 VY---GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
A R+G + V +L+ N A N VD G +PLHLAA +G+++IV VLL HG V +
Sbjct: 20 EAARAGQ--DDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 97 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
+ T LH AA GH +V LL++ D + T L LAA G LE V+ L++
Sbjct: 78 VY---GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 73/147 (49%), Gaps = 21/147 (14%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKR----------------SGPLAREIVELLLTNEAST 59
+ LLEAAR G V +++ A SG L EIVE+LL + A
Sbjct: 16 KKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHL--EIVEVLLKHGADV 73
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
+ D G +PLHLAA TG+++IV VLL +G +VN T LH AA GH +V
Sbjct: 74 DAADVYGFTPLHLAAMTGHLEIVEVLLKYG---ADVNAFDMTGSTPLHLAADEGHLEIVE 130
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYG 146
LL++ D ++ +TA D++ G
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNG 157
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN + T LH AA GH +V LL+H D +
Sbjct: 21 AARAGQDDEVRILIANGA---DVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
T L LAA G LE V+ L++ + + A++ + ++PLHLA+ GH +V
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLK-YGADVNAFD------MTGSTPLHLAADEGHLEIVE 130
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 131 VLLKYGADVNAQDKFG 146
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D ++ T L LAA G LE V+ L++ H + A
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLK-HGADVDA---- 75
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
+ ++ +PLHLA+ GH +V LL+ G DVN +G T LH AA G LE+V+ LL
Sbjct: 76 --ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Query: 397 EHGADLRIIDSKHNTVLDL 415
++GAD+ D T D+
Sbjct: 134 KYGADVNAQDKFGKTAFDI 152
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 13/150 (8%)
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 168
AA+ G V L+ + D ++ T L LAA G LE V+ L++ H + A
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLK-HGADVDA---- 75
Query: 169 AQSTLFPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222
+ ++ +PLHLA+ GH L+ G N D +G + LH AA GH EIVE+LL
Sbjct: 76 --ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Query: 223 TNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
A N D G + ++ GN D+ +
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N +D+ G + LH AA GH EIVE+LL N A N +D GS+PLHLAA G++
Sbjct: 34 MANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL +G +VN T LH AA GH +V LL++ D ++ +TA
Sbjct: 94 EIVEVLLKYG---ADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 309 DLAAQYGRLETVDTL 323
D++ G + + L
Sbjct: 151 DISIDNGNEDLAEIL 165
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 174 FPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAS 227
+ +PLHLA+R GH L+ G N D SG + LH AA GH EIVE+LL A
Sbjct: 46 YGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 228 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVV 287
N DT GS+PLHLAA TG+++IV VLL +G +VN K +TA + G+ +
Sbjct: 106 VNADDTIGSTPLHLAADTGHLEIVEVLLKYG---ADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 288 SQL 290
L
Sbjct: 163 EIL 165
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N DT G +PLHLAA G+++IV VLL +G +VN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG---ADVN 74
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
+ T LH AA+ GH +V LL++ D ++ T L LAA G LE V+ L++
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 326 THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 ------YGADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 166
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 39/185 (21%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
A R+G + V +L+ N A N DT G +PLHLAA G+++IV VLL +G +VN
Sbjct: 20 EAARAGQ--DDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA---DVN 74
Query: 97 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
+ T LH AA+ GH +V LL++ D ++ T L LAA G LE V+ L
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL-- 132
Query: 157 THPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKE 216
L+ G N QD G +A + NG+++
Sbjct: 133 --------------------------------LKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 217 IVELL 221
+ E+L
Sbjct: 161 LAEIL 165
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 79/153 (51%), Gaps = 17/153 (11%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSG-------PL---AR----EIVELLLTNEASTNI 61
+ LLEAAR G V +++ A + PL AR EIVE+LL N A N
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNA 75
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
+D GS+PLHLAA G+++IV VLL +G +VN T LH AA GH +V L
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYG---ADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
L++ D ++ +TA D++ G + + L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D ++ +T L LAA+ G LE V+ L++ A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN--------GAD 72
Query: 338 AQSTLFPAS-PLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTL 395
+ F S PLHLA++ GH +V LL+ G DVN G T LH AA G LE+V+ L
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 396 LEHGADLRIIDSKHNTVLDL 415
L++GAD+ D T D+
Sbjct: 133 LKYGADVNAQDKFGKTAFDI 152
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 15/153 (9%)
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 168
AA+ G V L+ + D ++ +T L LAA+ G LE V+ L++ A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN--------GAD 72
Query: 169 AQSTLFPAS-PLHLASRNGH------SLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
+ F S PLHLA++ GH L+ G N D+ G + LH AA GH EIVE+L
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 222 LTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVL 254
L A N D G + ++ GN D+ +L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN +T LH AA+ GH +V LL++ D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
T L LAA+ G LE V+ L++ + A T+ ++PLHLA+ GH +V
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLK------YGADVNADDTI-GSTPLHLAADTGHLEIVE 130
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 131 VLLKYGADVNAQDKFG 146
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D G + LH NGH EI+E+LL A N D G +PLHLAA+ G++
Sbjct: 34 MANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL +G +VN M T LH AA+ GH +V LL++ D ++ +TA
Sbjct: 94 EIVEVLLKYG---ADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 309 DLAAQYGRLETVDTLVR 325
D++ G + + L +
Sbjct: 151 DISIDNGNEDLAEILQK 167
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Query: 174 FPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAS 227
F +PLHL NGH L+ N D SG++ LH AA GH EIVE+LL A
Sbjct: 46 FGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 228 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVV 287
N +D +G +PLHLAA G+++IV VLL +G +VN K +TA + G+ +
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG---ADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 288 SQL 290
L
Sbjct: 163 EIL 165
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 17/155 (10%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSG-------PLAR-------EIVELLLTNEASTNI 61
+ LLEAAR G V +++ A + PL EI+E+LL A N
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA 75
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
D G +PLHLAA+ G+++IV VLL +G +VN M T LH AA+ GH +V L
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYG---ADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
L++ D ++ +TA D++ G + + L +
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G +PLHL G+++I+ VLL + +VN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY---AADVN 74
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
K T LH AA GH +V LL++ D + + T L LAA+ G LE V+ L++
Sbjct: 75 ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 326 THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 YGA------DVNAQDK-FGKTAFDISIDNGNED-LAEILQ 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 12/137 (8%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN T LH GH ++ LL+++ D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA-SPLHLASRNGHRSVV 360
T L LAA G LE V+ L++ Y A + + +PLHLA+ +GH +V
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLK--------YGADVNAMDYQGYTPLHLAAEDGHLEIV 129
Query: 361 ARLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 130 EVLLKYGADVNAQDKFG 146
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D + T L L G LE ++ L++ + NA
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADV----NAS 76
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
+S +PLHLA+ GH +V LL+ G DVN G T LH AA G LE+V+ LL
Sbjct: 77 DKSGW---TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 397 EHGADLRIIDSKHNTVLDL 415
++GAD+ D T D+
Sbjct: 134 KYGADVNAQDKFGKTAFDI 152
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D G++ LH AA GH EIVE+LL N A N D+ G +PLHLAA G++
Sbjct: 34 MANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
++V VLL +G +VN + T LH AA GH +V LL+H D ++ +TA
Sbjct: 94 EVVEVLLKNG---ADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 309 DLAAQYGRLETVDTLVR 325
D++ G + + L +
Sbjct: 151 DISIDNGNEDLAEILQK 167
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+ GH L+ G N DS G + LH AA GH E+VE+LL N A N
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D G +PLHLAA G+++IV VLL HG +VN K +TA + G+ + L
Sbjct: 109 NDHNGFTPLHLAANIGHLEIVEVLLKHG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D + T L LAA +G LE V+ L++ +
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKN------GADVN 74
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
A +L +PLHLA+ GH VV LL+ G DVN +G T LH AA G LE+V+ LL
Sbjct: 75 ADDSL-GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLL 133
Query: 397 EHGADLRIIDSKHNTVLDL 415
+HGAD+ D T D+
Sbjct: 134 KHGADVNAQDKFGKTAFDI 152
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 78/182 (42%), Gaps = 37/182 (20%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G D VR+L+ +G +VN T LH AA +GH +V LL++ D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
S T L LAA G LE V+ L L+ G
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVL----------------------------------LKNG 103
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
N D +G++ LH AA GH EIVE+LL + A N D G + ++ GN D+
Sbjct: 104 ADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 253 VL 254
+L
Sbjct: 164 IL 165
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
AA G + V +L+ N A N D G +PLHLAA+ G+++IV VLL +G +VN
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG---ADVNADD 77
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
T LH AA GH VV LL++ D + T L LAA G LE V+ L++
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK--- 134
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 ---HGADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 166
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 17/155 (10%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSG-------PLAR-------EIVELLLTNEASTNI 61
+ LLEAAR G V +++ A + PL EIVE+LL N A N
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA 75
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
D+ G +PLHLAA G++++V VLL +G +VN + T LH AA GH +V L
Sbjct: 76 DDSLGVTPLHLAADRGHLEVVEVLLKNG---ADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
L+H D ++ +TA D++ G + + L +
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN T LH AA +GH +V LL++ D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
S T L LAA G LE V+ L++ + NA + +PLHLA+ GH +V
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADV----NANDHNGF---TPLHLAANIGHLEIVE 130
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 131 VLLKHGADVNAQDKFG 146
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D G + LH AA GH EIVE+LL + A N DT G +PLHLAA G++
Sbjct: 34 MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL +G +VN T LH AA GH +V LL+H D ++ +TA
Sbjct: 94 EIVEVLLKYG---ADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 309 DLAAQYGRLETVDTLVR 325
D++ G + + L +
Sbjct: 151 DISIDNGNEDLAEILQK 167
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 82/157 (52%), Gaps = 11/157 (7%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
AA G + V +L+ N A N D +GS+PLHLAAW G+ +IV VLL HG +VN
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG---ADVNARD 77
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
D T LH AA GH +V LL++ D +++ T L LAA G LE V+ L++
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK--- 134
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 ---HGADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 166
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 85/185 (45%), Gaps = 39/185 (21%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
A R+G + V +L+ N A N D +GS+PLHLAAW G+ +IV VLL HG +VN
Sbjct: 20 EAARAGQ--DDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG---ADVN 74
Query: 97 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
D T LH AA GH +V LL++ D +++ T L LAA G LE V+ L
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL-- 132
Query: 157 THPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKE 216
L+ G N QD G +A + NG+++
Sbjct: 133 --------------------------------LKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 217 IVELL 221
+ E+L
Sbjct: 161 LAEIL 165
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 68/121 (56%), Gaps = 9/121 (7%)
Query: 176 ASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTN 229
++PLHLA+ GH L+ G N +D+ G++ LH AA NGH EIVE+LL A N
Sbjct: 48 STPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN 107
Query: 230 IVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQ 289
D G +PLHLAA G+++IV VLL HG +VN K +TA + G+ +
Sbjct: 108 AQDAYGLTPLHLAADRGHLEIVEVLLKHG---ADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 290 L 290
L
Sbjct: 165 L 165
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 76/175 (43%), Gaps = 44/175 (25%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN T LH AA GH +V LL+H D R+
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
+ T PLHLA+ NGH +V
Sbjct: 78 TDGWT----------------------------------------PLHLAADNGHLEIVE 97
Query: 362 RLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
LL+ G DVN + A G T LH AA G LE+V+ LL+HGAD+ D T D+
Sbjct: 98 VLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 77/153 (50%), Gaps = 17/153 (11%)
Query: 18 LLEAARNGNIQVVEKILSQRA-------KRSGPLAR-------EIVELLLTNEASTNIVD 63
LLEAAR G V +++ A + S PL EIVE+LL + A N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 123
T G +PLHLAA G+++IV VLL +G +VN T LH AA GH +V LL+
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYG---ADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 124 HSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
H D ++ +TA D++ G + + L +
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 192 GPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV 251
G N +D +G++ LH AA GH EIVE+LL N A N D+ G +PLHLAA G+++IV
Sbjct: 37 GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIV 96
Query: 252 RVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 311
VLL +G +VN T LH AA+ GH +V LL++ D ++ +TA D++
Sbjct: 97 EVLLKNG---ADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Query: 312 AQYGRLETVDTLVR 325
G + + L +
Sbjct: 154 IDNGNEDLAEILQK 167
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 80/182 (43%), Gaps = 37/182 (20%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G D VR+L+ +G +VN T LH AA +GH +V LL++ D ++
Sbjct: 21 AARAGQDDEVRILMANGA---DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
S T L LAA+ G LE V+ L++ G
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKN----------------------------------G 103
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
N DS G++ LH AA GH EIVE+LL N A N D G + ++ GN D+
Sbjct: 104 ADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 253 VL 254
+L
Sbjct: 164 IL 165
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+ GH L+ G N +DS G + LH AA GH EIVE+LL N A N
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D+ G +PLHLAA G+++IV VLL +G +VN K +TA + G+ + L
Sbjct: 109 SDSHGFTPLHLAAKRGHLEIVEVLLKNG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D R+ T L LAA +G LE V+ L++ +
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKN------GADVN 74
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
A+ +L +PLHLA+R GH +V LL+ G DVN + G T LH AA G LE+V+ LL
Sbjct: 75 AKDSL-GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL 133
Query: 397 EHGADLRIIDSKHNTVLDL 415
++GAD+ D T D+
Sbjct: 134 KNGADVNAQDKFGKTAFDI 152
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G +PLHLAA G+++IV VLL +G +VN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG---ADVN 74
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
T LH AA+ GH +V LL++ D +S T L LAA+ G LE V+ L++
Sbjct: 75 AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 326 THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 N------GADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 166
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 37/173 (21%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
V +L+ N A N D G +PLHLAA G+++IV VLL +G +VN T LH
Sbjct: 30 VRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG---ADVNAKDSLGVTPLHL 86
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 168
AA+ GH +V LL++ D +S T L LAA+ G LE V+ L
Sbjct: 87 AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL-------------- 132
Query: 169 AQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
L+ G N QD G +A + NG++++ E+L
Sbjct: 133 --------------------LKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN T LH AA +GH +V LL++ D ++
Sbjct: 21 AARAGQDDEVRILMANGA---DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
S T L LAA+ G LE V+ L++ + NA S +PLHLA++ GH +V
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADV----NA---SDSHGFTPLHLAAKRGHLEIVE 130
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 131 VLLKNGADVNAQDKFG 146
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 21/117 (17%)
Query: 21 AARNGNIQVVEKILSQRAK----------------RSGPLAREIVELLLTNEASTNIVDT 64
AA G++++VE +L A R G L EIVE+LL N A N D+
Sbjct: 54 AAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHL--EIVEVLLKNGADVNASDS 111
Query: 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
G +PLHLAA G+++IV VLL +G +VN K +TA + G+ + L
Sbjct: 112 HGFTPLHLAAKRGHLEIVEVLLKNG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D G++ LH AA GH EIVE+LL A N D G++PLHLAA G++
Sbjct: 34 MANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
+IV VLL HG +VN + T LH AA GH +V LL++ D ++ +TA
Sbjct: 94 EIVEVLLKHG---ADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 309 DLAAQYGRLETVDTLVR 325
D++ G + + L +
Sbjct: 151 DISIDNGNEDLAEILQK 167
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 9/120 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA++ GH L+ G N D+ G + LH AA NGH EIVE+LL + A N
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D +G +PLHLAA+ G+++IV VLL +G +VN K +TA + G+ + L
Sbjct: 109 KDYEGFTPLHLAAYDGHLEIVEVLLKYG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
AA G + V +L+ N A N D G +PLHLAA TG+++IV VLL +G +VN
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG---ADVNAWD 77
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
T LH AA GH +V LL+H D ++ T L LAA G LE V+ L++
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK--- 134
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ AQ F + ++ NG+ +A +LQ
Sbjct: 135 ---YGADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 166
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 82/185 (44%), Gaps = 39/185 (21%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
A R+G + V +L+ N A N D G +PLHLAA TG+++IV VLL +G +VN
Sbjct: 20 EAARAGQ--DDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG---ADVN 74
Query: 97 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
T LH AA GH +V LL+H D ++ T L LAA G LE V+ L
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL-- 132
Query: 157 THPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKE 216
L+ G N QD G +A + NG+++
Sbjct: 133 --------------------------------LKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 217 IVELL 221
+ E+L
Sbjct: 161 LAEIL 165
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 168
AA+ G V L+ + D + T L LAA+ G LE V+ L++ + + A++
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK-YGADVNAWDN- 78
Query: 169 AQSTLFPASPLHLASRNGH------SLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222
+ A+PLHLA+ NGH L+ G N +D G++ LH AA +GH EIVE+LL
Sbjct: 79 -----YGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Query: 223 TNEASTNIVDTKGSSPLHLAAWTGNVDIVRVL 254
A N D G + ++ GN D+ +L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D + T L LAA+ G LE V+ L++ + + A++
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK-YGADVNAWDN- 78
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
+ A+PLHLA+ NGH +V LL+ G DVN + G T LH AA G LE+V+ LL
Sbjct: 79 -----YGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Query: 397 EHGADLRIIDSKHNTVLDL 415
++GAD+ D T D+
Sbjct: 134 KYGADVNAQDKFGKTAFDI 152
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAK----------------RSGPLAREIVELLLTNEAST 59
+ LLEAAR G V +++ A ++G L EIVE+LL A
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHL--EIVEVLLKYGADV 73
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
N D G++PLHLAA G+++IV VLL HG +VN + T LH AA GH +V
Sbjct: 74 NAWDNYGATPLHLAADNGHLEIVEVLLKHGA---DVNAKDYEGFTPLHLAAYDGHLEIVE 130
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
LL++ D ++ +TA D++ G + + L +
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 10/136 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G V + + T LH AA+ GH +V LL++ D +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWL---GHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
+ T L LAA G LE V+ L++ H + A + +PLHLA+ +GH +V
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLK-HGADVNAKDYEG------FTPLHLAAYDGHLEIVE 130
Query: 362 RLLQAGLDVNIRTASG 377
LL+ G DVN + G
Sbjct: 131 VLLKYGADVNAQDKFG 146
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 110/224 (49%), Gaps = 20/224 (8%)
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
S +S +H AA++GH+ + L++ + NI+ SPLH A G++ V++LL HG
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG-- 59
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH--SCDPTIRNSRHETALDLAAQYGRLE 318
VN +T D T L A G V+ LL+H S P S + + AA+ G +E
Sbjct: 60 -AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPIHEAARRGHVE 115
Query: 319 TVDTLVRTHPGLIQAYNARAQSTL-FPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
V++L+ AY + +PL+LA N R+ V +LL++G DVN
Sbjct: 116 CVNSLI--------AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD 167
Query: 378 TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQFPP 421
+ LH A E+ L++ GAD + +++ ++L+ PP
Sbjct: 168 SPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELV---PP 208
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 22/198 (11%)
Query: 52 LLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ 111
L++ + NI+ SPLH A G++ V++LL HG VN +T D T L A
Sbjct: 22 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG---AQVNGVTADWHTPLFNACV 78
Query: 112 YGHTPVVSQLLEH--SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARA 169
G V+ LL+H S P S + + AA+ G +E V++L+ AY
Sbjct: 79 SGSWDCVNLLLQHGASVQP---ESDLASPIHEAARRGHVECVNSLI--------AYGGNI 127
Query: 170 QSTL-FPASPLHLASRNGH--SLRR--GPGANVQDSSGY-SALHHAALNGHKEIVELLLT 223
+ +PL+LA N +++ GA+V G S LH A +E+ LL+
Sbjct: 128 DHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMD 187
Query: 224 NEASTNIVDTKGSSPLHL 241
A T + +G P+ L
Sbjct: 188 FGADTQAKNAEGKRPVEL 205
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 13/224 (5%)
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
S +S +H AA++GH+ + L++ + NI+ SPLH A G++ V++LL HG
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA- 116
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 320
VN +T D T L A G V+ LL+H S + + AA+ G +E V
Sbjct: 117 --QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPESDLASPIHEAARRGHVECV 173
Query: 321 DTLVRTHPGLIQAYNARAQSTL-FPASPLHLASRNGHRSVVARLLQAGLDVNIRTASGTA 379
++L+ AY + +PL+LA N R+ V +LL++G DVN +
Sbjct: 174 NSLI--------AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSP 225
Query: 380 LHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQFPPHA 423
LH E+ L++ GAD + +++ ++L+ P A
Sbjct: 226 LHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLA 269
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 18/196 (9%)
Query: 52 LLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ 111
L++ + NI+ SPLH A G++ V++LL HG VN +T D T L A
Sbjct: 78 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG---AQVNGVTADWHTPLFNACV 134
Query: 112 YGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQS 171
G V+ LL+H S + + AA+ G +E V++L+ AY
Sbjct: 135 SGSWDCVNLLLQHGAS-VQPESDLASPIHEAARRGHVECVNSLI--------AYGGNIDH 185
Query: 172 TL-FPASPLHLASRNGH--SLRR--GPGANVQDSSGY-SALHHAALNGHKEIVELLLTNE 225
+ +PL+LA N +++ GA+V G S LH +E+ LL+
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFG 245
Query: 226 ASTNIVDTKGSSPLHL 241
A T + +G P+ L
Sbjct: 246 ADTQAKNAEGKRPVEL 261
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV-PNVNLMTKDNETALH 107
V++LL + A N V +PL A +G+ D V +LL HG SV P +L + +H
Sbjct: 108 VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASP-----IH 162
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 157
AA+ GH V+ L+ + + + S T L LA + + V L+ +
Sbjct: 163 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 212
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 6/212 (2%)
Query: 68 SPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 127
SPLH AA G+VDI +L+ G N++ ++D T L AA+ H V L++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGA---NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 128 PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 187
+++ T L LAA+ G E V L+ + + + + A+
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 188 SLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGN 247
L +G N++D+ LH AA +G +I E+LL + + V+ G SPLH+AA
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR 189
Query: 248 VDIVRVLLCHGPSVPNVNLMTKDNETALHCAA 279
D V + L +V L K+ ET L CA+
Sbjct: 190 YDCVVLFLSRD---SDVTLKNKEGETPLQCAS 218
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 17/226 (7%)
Query: 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDT 153
N + ++ + LH AA+ GH + L++ + + T L AA+ LE V
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 154 LVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHS------LRRGP-GANVQDSSGYSAL 206
L++ L+ +A + LHLA++ GH L G N QD G++ +
Sbjct: 63 LIKA-GALVDPKDAEGSTC------LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Query: 207 HHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNL 266
A H ++V+LLL+ + NI D + + LH AA++G VDI +LL + VN+
Sbjct: 116 IWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI 175
Query: 267 MTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAA 312
++ LH AA+ V L D T++N ET L A+
Sbjct: 176 H---GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 97/216 (44%), Gaps = 16/216 (7%)
Query: 177 SPLHLASRNGH----SLRRGPGANVQDSS--GYSALHHAALNGHKEIVELLLTNEASTNI 230
SPLH A+ GH + GAN+ S + L AA N H E V+ L+ A +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D +GS+ LHLAA G+ ++V+ LL +G +VN T + A +Y H +V L
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQM--DVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 291 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHL 350
L D IR++ L AA G ++ + L+ L A N SPLH+
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGD------SPLHI 183
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAAL 385
A+R V L DV ++ G T L A+L
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 9/153 (5%)
Query: 263 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDT 322
N + ++ + LH AA+ GH + L++ + + T L AA+ LE V
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 323 LVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAG-LDVNIRTASG-TAL 380
L++ L+ +A + LHLA++ GH VV LL G +DVN + G T +
Sbjct: 63 LIKA-GALVDPKDAEGSTC------LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Query: 381 HEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
A +++VK LL G+D+ I D++ N L
Sbjct: 116 IWATEYKHVDLVKLLLSKGSDINIRDNEENICL 148
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 15/172 (8%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
E V+ L+ A + D +GS+ LHLAA G+ ++V+ LL +G +VN T +
Sbjct: 58 EAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM--DVNCQDDGGWTPM 115
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
A +Y H +V LL D IR++ L AA G ++ + L+ L A N
Sbjct: 116 IWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVN 174
Query: 167 ARAQSTLFPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALN 212
SPLH+A+R L R +++ G + L A+LN
Sbjct: 175 IHGD------SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN 220
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 16/185 (8%)
Query: 100 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 159
+D+ TALH A GHT +V LL+ ++ + L +AA GR E V L+
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL---- 93
Query: 160 GLIQAYNARAQSTLFPASPLHLA-SRNGHS-----LRRGPGANVQDSSGYSALHHAALNG 213
G NA Q+ +PLH A S+N H L G + +D +A+H AA G
Sbjct: 94 GKGAQVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 150
Query: 214 HKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNET 273
+ +++ +LL +ASTNI DT+G++PLHLA V+ ++L+ G S+ N K+ +T
Sbjct: 151 NLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN---KEEKT 207
Query: 274 ALHCA 278
L A
Sbjct: 208 PLQVA 212
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
D +ALH A GH EIVE LL N D G SPLH+AA G +IV+ LL G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 259 PSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLE 318
V VN ++ T LH AA + LLE +P ++ TA+ AA G L+
Sbjct: 97 AQVNAVN---QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 153
Query: 319 TVDTLV 324
+ L+
Sbjct: 154 MIHILL 159
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 82/196 (41%), Gaps = 37/196 (18%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
EIVE LL N D G SPLH+AA G +IV+ LL G V VN ++ T L
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN---QNGCTPL 110
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
H AA + LLE +P ++ TA+ AA G L+ + L+
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL----------- 159
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
+ AS N+QD+ G + LH A E +LL++ A
Sbjct: 160 ------YYKAS-----------------TNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196
Query: 227 STNIVDTKGSSPLHLA 242
S I + + +PL +A
Sbjct: 197 SIYIENKEEKTPLQVA 212
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 8/148 (5%)
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
+D+ TALH A GHT +V LL+ ++ + L +AA GR E V L+
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL---- 93
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT-ASGTALHEAALCG 387
G NA Q+ +PLH A+ + LL+ G + + + TA+H AA G
Sbjct: 94 GKGAQVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 150
Query: 388 KLEVVKTLLEHGADLRIIDSKHNTVLDL 415
L+++ LL + A I D++ NT L L
Sbjct: 151 NLKMIHILLYYKASTNIQDTEGNTPLHL 178
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
RA G L +++ +LL +ASTNI DT+G++PLHLA V+ ++L+ G S+ N
Sbjct: 145 RAAAKGNL--KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 202
Query: 97 LMTKDNETALHCA 109
K+ +T L A
Sbjct: 203 ---KEEKTPLQVA 212
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 16/185 (8%)
Query: 100 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 159
+D+ TALH A GHT +V LL+ ++ + L +AA GR E V L+
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL---- 94
Query: 160 GLIQAYNARAQSTLFPASPLHLA-SRNGHS-----LRRGPGANVQDSSGYSALHHAALNG 213
G NA Q+ +PLH A S+N H L G + +D +A+H AA G
Sbjct: 95 GKGAQVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 151
Query: 214 HKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNET 273
+ +++ +LL +ASTNI DT+G++PLHLA V+ ++L+ G S+ N K+ +T
Sbjct: 152 NLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN---KEEKT 208
Query: 274 ALHCA 278
L A
Sbjct: 209 PLQVA 213
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
D +ALH A GH EIVE LL N D G SPLH+AA G +IV+ LL G
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 259 PSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLE 318
V VN ++ T LH AA + LLE +P ++ TA+ AA G L+
Sbjct: 98 AQVNAVN---QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 154
Query: 319 TVDTLV 324
+ L+
Sbjct: 155 MIHILL 160
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 82/196 (41%), Gaps = 37/196 (18%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
EIVE LL N D G SPLH+AA G +IV+ LL G V VN ++ T L
Sbjct: 55 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN---QNGCTPL 111
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
H AA + LLE +P ++ TA+ AA G L+ + L+
Sbjct: 112 HYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL----------- 160
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
+ AS N+QD+ G + LH A E +LL++ A
Sbjct: 161 ------YYKAS-----------------TNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
Query: 227 STNIVDTKGSSPLHLA 242
S I + + +PL +A
Sbjct: 198 SIYIENKEEKTPLQVA 213
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 8/148 (5%)
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
+D+ TALH A GHT +V LL+ ++ + L +AA GR E V L+
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL---- 94
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT-ASGTALHEAALCG 387
G NA Q+ +PLH A+ + LL+ G + + + TA+H AA G
Sbjct: 95 GKGAQVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 151
Query: 388 KLEVVKTLLEHGADLRIIDSKHNTVLDL 415
L+++ LL + A I D++ NT L L
Sbjct: 152 NLKMIHILLYYKASTNIQDTEGNTPLHL 179
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
RA G L +++ +LL +ASTNI DT+G++PLHLA V+ ++L+ G S+ N
Sbjct: 146 RAAAKGNL--KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 203
Query: 97 LMTKDNETALHCA 109
K+ +T L A
Sbjct: 204 ---KEEKTPLQVA 213
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 18/211 (8%)
Query: 74 AWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS 133
A++G +D ++ + S+ +D+ TALH A GHT +V LL+ ++
Sbjct: 14 AYSGKLDELKERILADKSLATRT--DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 134 RHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA-SRNGHS---- 188
+ L +AA GR E V L+ + A N +PLH A S+N H
Sbjct: 72 AGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNG------CTPLHYAASKNRHEIAVM 124
Query: 189 -LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGN 247
L G + +D +A+H AA G+ ++V +LL +ASTNI DT+G++PLHLA
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 248 VDIVRVLLCHGPSVPNVNLMTKDNETALHCA 278
V+ + L+ G S+ N K+ +T L A
Sbjct: 185 VEEAKFLVTQGASIYIEN---KEEKTPLQVA 212
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 81/196 (41%), Gaps = 37/196 (18%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
EIVE LL N D G SPLH+AA G +IV+ LL G V VN ++ T L
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVN---QNGCTPL 110
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
H AA + LLE +P ++ TA+ AA G L+ V L+
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL----------- 159
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
+ AS N+QD+ G + LH A E + L+T A
Sbjct: 160 ------FYKAS-----------------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
Query: 227 STNIVDTKGSSPLHLA 242
S I + + +PL +A
Sbjct: 197 SIYIENKEEKTPLQVA 212
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 10/174 (5%)
Query: 243 AWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS 302
A++G +D ++ + S+ +D+ TALH A GHT +V LL+ ++
Sbjct: 14 AYSGKLDELKERILADKSLATRT--DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 303 RHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVAR 362
+ L +AA GR E V L+ + A N +PLH A+ +
Sbjct: 72 AGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNG------CTPLHYAASKNRHEIAVM 124
Query: 363 LLQAGLDVNIRT-ASGTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
LL+ G + + + TA+H AA G L++V LL + A I D++ NT L L
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
RA G L ++V +LL +ASTNI DT+G++PLHLA V+ + L+ G S+ N
Sbjct: 145 RAAAKGNL--KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202
Query: 97 LMTKDNETALHCA 109
K+ +T L A
Sbjct: 203 ---KEEKTPLQVA 212
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L RG N + G +ALH A ++ + ++V+ L+ N A+ N D +G PLH AA G +
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
DI L+ G V VN G TP + E + + ++N + +
Sbjct: 120 DIAEYLISQGAHVGAVN--------------SEGDTP-LDIAEEEAMEELLQNEVNRQGV 164
Query: 309 DLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGL 368
D+ A E + L L + + + LH+A+ G+ V+ L+QA
Sbjct: 165 DIEAARKEEERI-MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223
Query: 369 DVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
DVNI+ G T LH AA GK E + L+E+ D+ ++ T D+
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 94/216 (43%), Gaps = 13/216 (6%)
Query: 52 LLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ 111
LL A N + G + LH A NVD+V+ L+ +G N+N + LH AA
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG---ANINQPDNEGWIPLHAAAS 115
Query: 112 YGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQS 171
G+ + L+ NS +T LD+A + E + V I+A +
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175
Query: 172 TLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
+ + L S + + +R SG +ALH AA G+ E+++LL+ NI
Sbjct: 176 IMLRDARQWLNSGHINDVRHA-------KSGGTALHVAAAKGYTEVLKLLIQARYDVNIK 228
Query: 232 DTKGSSPLHLAAWTGNVDIVRVL---LCHGPSVPNV 264
D G +PLH AA G + R+L LC +V V
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV 264
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 10/157 (6%)
Query: 264 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
VN+ ++D + LH AA +G ++ LL+H + RN+ L LA Q G + V L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 324 VRTHPGLIQAYNARA-QSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALH 381
+ + NA+ + L +PL A GH +VA LLQ G +N G TALH
Sbjct: 139 LDS--------NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALH 190
Query: 382 EAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQ 418
EA + + VV+ LL HGA +++++ + T +D +Q
Sbjct: 191 EAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ 227
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 37/186 (19%)
Query: 95 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
VN+ ++D + LH AA +G ++ LL+H + RN+ L LA Q G + V L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 155 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGH 214
+ ++ A P N +D SG + L +A GH
Sbjct: 139 LDSN-----------------AKP-----------------NKKDLSGNTPLIYACSGGH 164
Query: 215 KEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA 274
E+V LLL + AS N + KG++ LH A +V +V +LL HG S V ++ K TA
Sbjct: 165 HELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS---VQVLNKRQRTA 221
Query: 275 LHCAAQ 280
+ CA Q
Sbjct: 222 VDCAEQ 227
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 75/190 (39%), Gaps = 37/190 (19%)
Query: 59 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVV 118
N+ GSSPLH+AA G D++ +LL HG N D LH A Q GH VV
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHG---ANAGARNADQAVPLHLACQQGHFQVV 135
Query: 119 SQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASP 178
LL+ + P ++ T L A G E V L
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL------------------------ 171
Query: 179 LHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSP 238
L+ G N ++ G +ALH A + H +VELLL + AS +++ + +
Sbjct: 172 ----------LQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTA 221
Query: 239 LHLAAWTGNV 248
+ A +
Sbjct: 222 VDCAEQNSKI 231
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 192 GPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV 251
G G NV G S LH AAL+G +++ LLL + A+ + + PLHLA G+ +V
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 252 RVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 311
+ LL + PN ++ + C+ GH +V+ LL+H N++ TAL A
Sbjct: 136 KCLL-DSNAKPNKKDLSGNTPLIYACSG--GHHELVALLLQHGASINASNNKGNTALHEA 192
Query: 312 AQYGRLETVDTLVRTHPGLIQAYNARAQSTL 342
+ V+ L+ H +Q N R ++ +
Sbjct: 193 VIEKHVFVVELLL-LHGASVQVLNKRQRTAV 222
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 21 AARNGNIQVVEKILSQRAK-----RSG--PLA-------REIVELLLTNEASTNIVDTKG 66
A + G+ QVV+ +L AK SG PL E+V LLL + AS N + KG
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG 185
Query: 67 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ 111
++ LH A +V +V +LL HG S V ++ K TA+ CA Q
Sbjct: 186 NTALHEAVIEKHVFVVELLLLHGAS---VQVLNKRQRTAVDCAEQ 227
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
+++ LLL + A+ + + PLHLA G+ +V+ LL + PN ++ +
Sbjct: 100 DLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL-DSNAKPNKKDLSGNTPLIY 158
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
C+ GH +V+ LL+H N++ TAL A + V+ L+ H +Q N
Sbjct: 159 ACSG--GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL-LHGASVQVLN 215
Query: 167 ARAQSTL 173
R ++ +
Sbjct: 216 KRQRTAV 222
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
AA G + V +L+ N A N D KG++PLHLAA +++IV VLL HG +VN
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG---ADVNAHD 77
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
D T LH AA +GH +V LL+H D ++ +TA D++ G + + L +
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
A R+G + V +L+ N A N D KG++PLHLAA +++IV VLL HG +VN
Sbjct: 20 EAARAGQ--DDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA---DVN 74
Query: 97 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
D T LH AA +GH +V LL+H D ++ +TA D++ G + + L +
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D G + LH AA H EIVE+LL + A N D GS+PLHLAA G++
Sbjct: 34 MANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
+IV VLL HG +VN K +TA + G+ + L
Sbjct: 94 EIVEVLLKHG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRI 404
+PLHLA+ H +V LL+ G DVN G T LH AAL G LE+V+ LL+HGAD+
Sbjct: 49 TPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNA 108
Query: 405 IDSKHNTVLDL 415
D T D+
Sbjct: 109 QDKFGKTAFDI 119
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 18 LLEAARNGNIQVVEKILSQRA-------KRSGPLAR-------EIVELLLTNEASTNIVD 63
LLEAAR G V +++ A K + PL EIVE+LL + A N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
GS+PLHLAA G+++IV VLL HG +VN K +TA + G+ + L
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 34/146 (23%)
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 168
AA+ G V L+ + D + + T L LAA Y LE V+ L
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVL-------------- 66
Query: 169 AQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAST 228
L+ G N D+ G + LH AAL GH EIVE+LL + A
Sbjct: 67 --------------------LKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADV 106
Query: 229 NIVDTKGSSPLHLAAWTGNVDIVRVL 254
N D G + ++ GN D+ +L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D + + T L LAA Y LE V+ L++ H + A++
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGADVNAHDND 79
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
++PLHLA+ GH +V LL+ G DVN + G
Sbjct: 80 G------STPLHLAALFGHLEIVEVLLKHGADVNAQDKFG 113
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKH 409
A+R G V L+ G DVN G T LH AA LE+V+ LL+HGAD+ D+
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 410 NTVLDLLKQF 419
+T L L F
Sbjct: 81 STPLHLAALF 90
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 377 GTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQF 419
G L EAA G+ + V+ L+ +GAD+ D K NT L L +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADY 57
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 6/88 (6%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+RNGH L G N +D +G + LH AA NGH E+V+LLL A N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
D G +PLHLAA G++++V++LL G
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
+G + LH AA NGH E+V+LLL A N D G +PLHLAA G++++V++LL G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-- 58
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 292
+VN K+ T LH AA+ GH VV LLE
Sbjct: 59 -ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRI 404
+PLHLA+RNGH VV LL+AG DVN + +G T LH AA G LEVVK LLE GAD+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 405 IDSKHNTVLDL 415
D T L L
Sbjct: 64 KDKNGRTPLHL 74
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 58/96 (60%), Gaps = 8/96 (8%)
Query: 306 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
T L LAA+ G LE V L+ + NA+ ++ +PLHLA+RNGH VV LL+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV----NAKDKNG---RTPLHLAARNGHLEVVKLLLE 56
Query: 366 AGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGA 400
AG DVN + +G T LH AA G LEVVK LLE GA
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
G +PLHLAA G++++V++LL G +VN K+ T LH AA+ GH VV LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLV 155
D ++ T L LAA+ G LE V L+
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
G +PLHLAA G++++V++LL G +VN K+ T LH AA+ GH VV LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 295 CDPTIRNSRHETALDLAAQYGRLETVDTLV 324
D ++ T L LAA+ G LE V L+
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 38 AKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNL 97
A R+G L E+V+LLL A N D G +PLHLAA G++++V++LL G +VN
Sbjct: 9 AARNGHL--EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNA 63
Query: 98 MTKDNETALHCAAQYGHTPVVSQLLE 123
K+ T LH AA+ GH VV LLE
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 270 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 329
+ T LH AA+ GH VV LLE D ++ T L LAA+ G LE V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 330 LIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAG 367
+ NA+ ++ +PLHLA+RNGH VV LL+AG
Sbjct: 61 V----NAKDKNG---RTPLHLAARNGHLEVVKLLLEAG 91
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 101 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 160
+ T LH AA+ GH VV LLE D ++ T L LAA+ G LE V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 161 LIQAYNARAQSTLFPASPLHLASRNGH 187
+ NA+ ++ +PLHLA+RNGH
Sbjct: 61 V----NAKDKNG---RTPLHLAARNGH 80
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 18/211 (8%)
Query: 74 AWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS 133
A++G +D ++ + S+ +D+ TALH A GHT +V LL+ ++
Sbjct: 14 AYSGKLDELKERILADKSLATRT--DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 134 RHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA-SRNGHS---- 188
+ L +AA G E V L+ + A N +PLH A S+N H
Sbjct: 72 AGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNG------CTPLHYAASKNRHEIAVM 124
Query: 189 -LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGN 247
L G + +D +A+H AA G+ ++V +LL +ASTNI DT+G++PLHLA
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 248 VDIVRVLLCHGPSVPNVNLMTKDNETALHCA 278
V+ + L+ G S+ N K+ +T L A
Sbjct: 185 VEEAKFLVTQGASIYIEN---KEEKTPLQVA 212
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 81/196 (41%), Gaps = 37/196 (18%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
EIVE LL N D G SPLH+AA G +IV+ LL G V VN ++ T L
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN---QNGCTPL 110
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
H AA + LLE +P ++ TA+ AA G L+ V L+
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL----------- 159
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
+ AS N+QD+ G + LH A E + L+T A
Sbjct: 160 ------FYKAS-----------------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
Query: 227 STNIVDTKGSSPLHLA 242
S I + + +PL +A
Sbjct: 197 SIYIENKEEKTPLQVA 212
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 10/174 (5%)
Query: 243 AWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS 302
A++G +D ++ + S+ +D+ TALH A GHT +V LL+ ++
Sbjct: 14 AYSGKLDELKERILADKSLATRT--DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 303 RHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVAR 362
+ L +AA G E V L+ + A N +PLH A+ +
Sbjct: 72 AGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNG------CTPLHYAASKNRHEIAVM 124
Query: 363 LLQAGLDVNIRT-ASGTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
LL+ G + + + TA+H AA G L++V LL + A I D++ NT L L
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
RA G L ++V +LL +ASTNI DT+G++PLHLA V+ + L+ G S+ N
Sbjct: 145 RAAAKGNL--KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202
Query: 97 LMTKDNETALHCA 109
K+ +T L A
Sbjct: 203 ---KEEKTPLQVA 212
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 213 GHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNE 272
G + V +L+ N A N +D G +PLHLAA G+++IV VLL HG V ++ +
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR--- 81
Query: 273 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
T LH AA GH +V LLE+ D ++ +TA D++ G + + L +
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
V +L+ N A N +D G +PLHLAA G+++IV VLL HG V ++ + T LH
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR---TPLHL 86
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
AA GH +V LLE+ D ++ +TA D++ G + + L +
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D +G + LH AA GH EIVE+LL + A N D G +PLHLAA G++
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
+IV VLL +G +VN K +TA + G+ + L
Sbjct: 94 EIVEVLLEYG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRI 404
+PLHLA++ GH +V LL+ G DVN G T LH AA G LE+V+ LLE+GAD+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 405 IDSKHNTVLDL 415
D T D+
Sbjct: 109 QDKFGKTAFDI 119
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA++ GH L+ G N D G + LH AA GH EIVE+LL A N
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVL 254
D G + ++ GN D+ +L
Sbjct: 109 QDKFGKTAFDISIDNGNEDLAEIL 132
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 58/145 (40%), Gaps = 37/145 (25%)
Query: 77 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136
G D VR+L+ +G +VN M T LH AA+ GH +V LL+H D +
Sbjct: 25 GQDDEVRILMANGA---DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR 81
Query: 137 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196
T L LAA G LE V+ L L G N
Sbjct: 82 TPLHLAATVGHLEIVEVL----------------------------------LEYGADVN 107
Query: 197 VQDSSGYSALHHAALNGHKEIVELL 221
QD G +A + NG++++ E+L
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 246 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 305
G D VR+L+ +G +VN M T LH AA+ GH +V LL+H D +
Sbjct: 25 GQDDEVRILMANGA---DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR 81
Query: 306 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
T L LAA G LE V+ L+ + AQ F + ++ NG+ +A +LQ
Sbjct: 82 TPLHLAATVGHLEIVEVLLE------YGADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 133
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
EIVE+LL + A N D G +PLHLAA G+++IV VLL +G +VN K +TA
Sbjct: 61 EIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYG---ADVNAQDKFGKTAF 117
Query: 107 HCAAQYGHTPVVSQL 121
+ G+ + L
Sbjct: 118 DISIDNGNEDLAEIL 132
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
A + G V L+ + D + T L LAA+ G LE V+ L++ H + A
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNA---- 75
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
S ++ +PLHLA+ GH +V LL+ G DVN + G
Sbjct: 76 --SDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIID 406
A+R G V L+ G DVN +G T LH AA G LE+V+ LL+HGAD+ D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 21 AARNGNIQVVEKILSQRA--KRSGPLAR------------EIVELLLTNEASTNIVDTKG 66
AA+ G++++VE +L A S R EIVE+LL A N D G
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 67 SSPLHLAAWTGNVDIVRVL 85
+ ++ GN D+ +L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 213 GHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNE 272
G + V +L+ N A N +D G +PLHLAA G+++IV VLL HG V ++ +
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR--- 81
Query: 273 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
T LH AA GH +V LLE+ D ++ +TA D++ G + + L +
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
V +L+ N A N +D G +PLHLAA G+++IV VLL HG V ++ + T LH
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR---TPLHL 86
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
AA GH +V LLE+ D ++ +TA D++ G + + L +
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 192 GPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV 251
G N D +G + LH AA GH EIVE+LL + A N D G +PLHLAA G+++IV
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIV 96
Query: 252 RVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
VLL +G +VN K +TA + G+ + L
Sbjct: 97 EVLLEYG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRI 404
+PLHLA++ GH +V LL+ G DVN R G T LH AA G LE+V+ LLE+GAD+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 405 IDSKHNTVLDL 415
D T D+
Sbjct: 109 QDKFGKTAFDI 119
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 60/149 (40%), Gaps = 37/149 (24%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
A G D VR+L+ +G +VN M T LH AA+ GH +V LL+H D R+
Sbjct: 21 ATRAGQDDEVRILMANGA---DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
T L LAA G LE V+ L L G
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVL----------------------------------LEYG 103
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELL 221
N QD G +A + NG++++ E+L
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA++ GH L+ G N +D G + LH AA GH EIVE+LL A N
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVL 254
D G + ++ GN D+ +L
Sbjct: 109 QDKFGKTAFDISIDNGNEDLAEIL 132
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
A G D VR+L+ +G +VN M T LH AA+ GH +V LL+H D R+
Sbjct: 21 ATRAGQDDEVRILMANGA---DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
T L LAA G LE V+ L+ + AQ F + ++ NG+ +A
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLE------YGADVNAQDK-FGKTAFDISIDNGNED-LA 129
Query: 362 RLLQ 365
+LQ
Sbjct: 130 EILQ 133
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
EIVE+LL + A N D G +PLHLAA G+++IV VLL +G +VN K +TA
Sbjct: 61 EIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYG---ADVNAQDKFGKTAF 117
Query: 107 HCAAQYGHTPVVSQL 121
+ G+ + L
Sbjct: 118 DISIDNGNEDLAEIL 132
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
A + G V L+ + D + T L LAA+ G LE V+ L++ + NAR
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV----NAR 76
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
++ +PLHLA+ GH +V LL+ G DVN + G
Sbjct: 77 ---DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIID 406
A+R G V L+ G DVN +G T LH AA G LE+V+ LL+HGAD+ D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 21 AARNGNIQVVEKILSQRAKRSG-------PLAR-------EIVELLLTNEASTNIVDTKG 66
AA+ G++++VE +L A + PL EIVE+LL A N D G
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 67 SSPLHLAAWTGNVDIVRVL 85
+ ++ GN D+ +L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 213 GHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNE 272
G + V +L+ N A N +D G +PLHLAA G+++IV VLL HG +VN
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG---ADVNASDSWGR 81
Query: 273 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
T LH AA GH +V LLE+ D ++ +TA D++ G + + L +
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
V +L+ N A N +D G +PLHLAA G+++IV VLL HG +VN T LH
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG---ADVNASDSWGRTPLHL 86
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
AA GH +V LLE+ D ++ +TA D++ G + + L +
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D +G + LH AA GH EIVE+LL + A N D+ G +PLHLAA G++
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
+IV VLL +G +VN K +TA + G+ + L
Sbjct: 94 EIVEVLLEYG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRI 404
+PLHLA++ GH +V LL+ G DVN + G T LH AA G LE+V+ LLE+GAD+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 405 IDSKHNTVLDL 415
D T D+
Sbjct: 109 QDKFGKTAFDI 119
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA++ GH L+ G N DS G + LH AA GH EIVE+LL A N
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVL 254
D G + ++ GN D+ +L
Sbjct: 109 QDKFGKTAFDISIDNGNEDLAEIL 132
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 59/145 (40%), Gaps = 37/145 (25%)
Query: 77 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136
G D VR+L+ +G +VN M T LH AA+ GH +V LL+H D +S
Sbjct: 25 GQDDEVRILMANGA---DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR 81
Query: 137 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196
T L LAA G LE V+ L L G N
Sbjct: 82 TPLHLAATVGHLEIVEVL----------------------------------LEYGADVN 107
Query: 197 VQDSSGYSALHHAALNGHKEIVELL 221
QD G +A + NG++++ E+L
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 246 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 305
G D VR+L+ +G +VN M T LH AA+ GH +V LL+H D +S
Sbjct: 25 GQDDEVRILMANGA---DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR 81
Query: 306 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
T L LAA G LE V+ L+ + AQ F + ++ NG+ +A +LQ
Sbjct: 82 TPLHLAATVGHLEIVEVLLE------YGADVNAQDK-FGKTAFDISIDNGNED-LAEILQ 133
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
EIVE+LL + A N D+ G +PLHLAA G+++IV VLL +G +VN K +TA
Sbjct: 61 EIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYG---ADVNAQDKFGKTAF 117
Query: 107 HCAAQYGHTPVVSQL 121
+ G+ + L
Sbjct: 118 DISIDNGNEDLAEIL 132
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
A + G V L+ + D + T L LAA+ G LE V+ L++ H + A ++
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDS- 78
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
+ +PLHLA+ GH +V LL+ G DVN + G
Sbjct: 79 -----WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKH 409
A+R G V L+ G DVN +G T LH AA G LE+V+ LL+HGAD+ DS
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 410 NTVLDL 415
T L L
Sbjct: 81 RTPLHL 86
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 21 AARNGNIQVVEKILSQRA--KRSGPLAR------------EIVELLLTNEASTNIVDTKG 66
AA+ G++++VE +L A S R EIVE+LL A N D G
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 67 SSPLHLAAWTGNVDIVRVL 85
+ ++ GN D+ +L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 192 GPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV 251
G N D G++ LH AA+ GH EIVE+LL N A N G +PLHLAAW +++IV
Sbjct: 37 GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIV 96
Query: 252 RVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
VLL HG +VN K +TA + G+ + L
Sbjct: 97 EVLLKHG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L N A N D G +PLHLAA G+++IV VLL +G +VN
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG---ADVN 74
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
T LH AA H +V LL+H D ++ +TA D++ G + + L +
Sbjct: 75 ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 37 RAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 96
A R+G + V +L N A N D G +PLHLAA G+++IV VLL +G +VN
Sbjct: 20 EAARAGQ--DDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG---ADVN 74
Query: 97 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
T LH AA H +V LL+H D ++ +TA D++ G + + L +
Sbjct: 75 ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRI 404
+PLHLA+ GH +V LL+ G DVN +G T LH AA LE+V+ LL+HGAD+
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108
Query: 405 IDSKHNTVLDL 415
D T D+
Sbjct: 109 QDKFGKTAFDI 119
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+ GH L+ G N ++G + LH AA H EIVE+LL + A N
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVL 254
D G + ++ GN D+ +L
Sbjct: 109 QDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L + D + T L LAA G LE V+ L++ + NA
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV----NAT 76
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
+ +PLHLA+ H +V LL+ G DVN + G
Sbjct: 77 GNT---GRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 21 AARNGNIQVVEKILSQRA--KRSGPLAR------------EIVELLLTNEASTNIVDTKG 66
AA G++++VE +L A +G R EIVE+LL + A N D G
Sbjct: 54 AAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
Query: 67 SSPLHLAAWTGNVDIVRVL 85
+ ++ GN D+ +L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 12/190 (6%)
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
D + + LH AA +D+V+ + G V L N T LH A + GH +V QL+
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQ--LGGDLNSTPLHWATRQGHLSMVVQLM 96
Query: 292 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 351
++ DP++ + + + LAAQ+G V L+ Q + Q+ + +PL A
Sbjct: 97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG----QDVDMMDQNGM---TPLMWA 149
Query: 352 SRNGHRSVVARLL---QAGLDVNIRTASGTALHEAALCGKLEVVKTLLEHGADLRIIDSK 408
+ H RLL +++ + TALH A L G V+ LLE GA++ + K
Sbjct: 150 AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK 209
Query: 409 HNTVLDLLKQ 418
+ LDL KQ
Sbjct: 210 GESALDLAKQ 219
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 41/232 (17%)
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
D + + LH AA +D+V+ + G V L N T LH A + GH +V QL+
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQ--LGGDLNSTPLHWATRQGHLSMVVQLM 96
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 182
++ DP++ + + + LAAQ+G V L+
Sbjct: 97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI--------------------------- 129
Query: 183 SRNGHSLRRGPGANVQDSSGYSALHHAALNGHK-EIVELLLTNEASTNIVDTK-GSSPLH 240
+G ++ D +G + L AA H + LLLT S N+ D ++ LH
Sbjct: 130 -------AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALH 182
Query: 241 LAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 292
A GN ++ +LL G +V N+ E+AL A Q + +++ L E
Sbjct: 183 WAVLAGNTTVISLLLEAGANVDAQNI---KGESALDLAKQRKNVWMINHLQE 231
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 89/221 (40%), Gaps = 46/221 (20%)
Query: 142 AAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH----SLRRGPGANV 197
A QYG E LV Y+ R Q + LH A+ N GA V
Sbjct: 16 ATQYGIYERCRELVEA------GYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIV 68
Query: 198 QDSSG---YSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVL 254
G + LH A GH +V L+ A +++D +G S +HLAA G+ IV L
Sbjct: 69 DQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL 128
Query: 255 LCHGPSVP-------------------------------NVNLMTKDNE-TALHCAAQYG 282
+ G V +VNL K ++ TALH A G
Sbjct: 129 IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188
Query: 283 HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
+T V+S LLE + +N + E+ALDLA Q + ++ L
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 38 AKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP---- 93
A R G L+ +V L+ A +++D +G S +HLAA G+ IV L+ G V
Sbjct: 83 ATRQGHLS--MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ 140
Query: 94 ---------------------------NVNLMTKDNE-TALHCAAQYGHTPVVSQLLEHS 125
+VNL K ++ TALH A G+T V+S LLE
Sbjct: 141 NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG 200
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTL 154
+ +N + E+ALDLA Q + ++ L
Sbjct: 201 ANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 311 AAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDV 370
A QYG E LV Y+ R Q + LH A+ N +V + G V
Sbjct: 16 ATQYGIYERCRELVEA------GYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIV 68
Query: 371 NIRTA--SGTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQF 419
+ + T LH A G L +V L+++GAD +ID + + + L QF
Sbjct: 69 DQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF 119
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 69.3 bits (168), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N +D G + LH AA+N H EIVE+LL N A N +D G +PLHL A G++
Sbjct: 34 MANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 283
+IV VLL HG +VN K +TA + G+
Sbjct: 94 EIVEVLLKHG---ADVNAQDKFGKTAFDISIDNGN 125
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G +PLHLAA +++IV VLL +G +VN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNG---ADVN 74
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
+ ET LH A YGH +V LL+H D ++ +TA D++ G + + L
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.3 bits (155), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
V +L+ N A N D G +PLHLAA +++IV VLL +G +VN + ET LH
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA---DVNAIDAIGETPLHL 86
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
A YGH +V LL+H D ++ +TA D++ G + + L
Sbjct: 87 VAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRI 404
+PLHLA+ N H +V LL+ G DVN A G T LH A+ G LE+V+ LL+HGAD+
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNA 108
Query: 405 IDSKHNTVLDL 415
D T D+
Sbjct: 109 QDKFGKTAFDI 119
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+ N H L+ G N D+ G + LH A+ GH EIVE+LL + A N
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVL 254
D G + ++ GN D+ +L
Sbjct: 109 QDKFGKTAFDISIDNGNEDLAEIL 132
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 17/113 (15%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSG-------PLAR-------EIVELLLTNEASTNI 61
+ LLEAAR G V +++ A + PL EIVE+LL N A N
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA 75
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 114
+D G +PLHL A G+++IV VLL HG +VN K +TA + G+
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLLKHG---ADVNAQDKFGKTAFDISIDNGN 125
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 61/149 (40%), Gaps = 37/149 (24%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G D VR+L+ +G +VN K T LH AA H +V LL++ D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
+ ET L L A YG LE V+ L L+ G
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVL----------------------------------LKHG 103
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELL 221
N QD G +A + NG++++ E+L
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN K T LH AA H +V LL++ D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 302 SRHETALDLAAQYGRLETVDTLVR 325
+ ET L L A YG LE V+ L++
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLK 101
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKH 409
A+R G V L+ G DVN G T LH AA+ LE+V+ LL++GAD+ ID+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 410 NTVLDLLKQF 419
T L L+ +
Sbjct: 81 ETPLHLVAMY 90
Score = 37.4 bits (85), Expect = 0.016, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D + T L LAA LE V+ L++ + A +A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD-VNAIDAI 79
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
++ PLHL + GH +V LL+ G DVN + G
Sbjct: 80 GET------PLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 18/148 (12%)
Query: 21 AARNGNIQVVEKILSQRA------KRSGPLAREIVEL--------LLTNEASTNIVDTKG 66
AA G++Q V ++L + R G A +++ LL AS N+ DT G
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSG 68
Query: 67 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC 126
+SP+H AA TG +D ++VL+ HG +VN+ +H A Q GHT VVS L
Sbjct: 69 TSPVHDAARTGFLDTLKVLVEHG---ADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAES 124
Query: 127 DPTIRNSRHETALDLAAQYGRLETVDTL 154
D R++R T L+LA Q G + VD L
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
G +AL + G I LL AS N+ DT G+SP+H AA TG +D ++VL+ HG
Sbjct: 36 GKTALQ-VMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA-- 92
Query: 262 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 321
+VN+ +H A Q GHT VVS L D R++R T L+LA Q G + VD
Sbjct: 93 -DVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDARGLTPLELALQRGAQDLVD 150
Query: 322 TL 323
L
Sbjct: 151 IL 152
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G+V VR LL P+ + + +TAL +G T + +LL+ P +++
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQVM-MFGSTAIALELLKQGASPNVQD 65
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
+ + + AA+ G L+T+ LV H + + A P+HLA + GH +VV+
Sbjct: 66 TSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTG------ALPIHLAVQEGHTAVVS 118
Query: 362 RLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEH 398
L A D++ R A G T L A G ++V L H
Sbjct: 119 -FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 355 GHRSVVARLLQAGLDVNIRTASGTA-LHEAALCGKLEVVKTLLEHGADLRIIDS 407
G ++ LL+ G N++ SGT+ +H+AA G L+ +K L+EHGAD+ + D
Sbjct: 46 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 99
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASGT-ALHEAALCGKLEVVKTLLEHGADLRI 404
SP+H A+R G + L++ G DVN+ +G +H A G VV + L +DL
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV-SFLAAESDLHR 128
Query: 405 IDSKHNTVLDLLKQFPPHAVHDI 427
D++ T L+L Q + DI
Sbjct: 129 RDARGLTPLELALQRGAQDLVDI 151
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 18/148 (12%)
Query: 21 AARNGNIQVVEKILSQRA------KRSGPLAREIVEL--------LLTNEASTNIVDTKG 66
AA G++Q V ++L + R G A +++ LL AS N+ DT G
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSG 74
Query: 67 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC 126
+SP+H AA TG +D ++VL+ HG +VN+ +H A Q GHT VVS L
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHG---ADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAES 130
Query: 127 DPTIRNSRHETALDLAAQYGRLETVDTL 154
D R++R T L+LA Q G + VD L
Sbjct: 131 DLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 79/186 (42%), Gaps = 46/186 (24%)
Query: 142 AAQYGRLETVDTLVR---THPGLIQAYNARA-QSTLFPASPLHLASRNGHSLRRGPGANV 197
AA G ++ V L+ HP + + A Q +F ++ + L L++G NV
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIAL-----ELLKQGASPNV 69
Query: 198 QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257
QD+SG S +H AA G + +++L+ + A N+ D G+ P+HL
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL---------------- 113
Query: 258 GPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRL 317
A Q GHT VVS L D R++R T L+LA Q G
Sbjct: 114 --------------------AVQEGHTAVVS-FLAAESDLHRRDARGLTPLELALQRGAQ 152
Query: 318 ETVDTL 323
+ VD L
Sbjct: 153 DLVDIL 158
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G+V VR LL P+ + + +TAL +G T + +LL+ P +++
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQVM-MFGSTAIALELLKQGASPNVQD 71
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
+ + + AA+ G L+T+ LV H + + A P+HLA + GH +VV+
Sbjct: 72 TSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTG------ALPIHLAVQEGHTAVVS 124
Query: 362 RLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEH 398
L A D++ R A G T L A G ++V L H
Sbjct: 125 -FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 161
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 355 GHRSVVARLLQAGLDVNIRTASGTA-LHEAALCGKLEVVKTLLEHGADLRIIDS 407
G ++ LL+ G N++ SGT+ +H+AA G L+ +K L+EHGAD+ + D
Sbjct: 52 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 105
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASGT-ALHEAALCGKLEVVKTLLEHGADLRI 404
SP+H A+R G + L++ G DVN+ +G +H A G VV + L +DL
Sbjct: 76 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV-SFLAAESDLHR 134
Query: 405 IDSKHNTVLDLLKQFPPHAVHDI 427
D++ T L+L Q + DI
Sbjct: 135 RDARGLTPLELALQRGAQDLVDI 157
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N +D G +PLHLAA G+++IV VLL +G +VN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG---ADVN 74
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
T LH AA GH +V LL+H D ++ +TA D++ G + + L +
Sbjct: 75 AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
V +L+ N A N +D G +PLHLAA G+++IV VLL +G +VN T LH
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA---DVNAEDNFGITPLHL 86
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
AA GH +V LL+H D ++ +TA D++ G + + L +
Sbjct: 87 AAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N D G + LH AA GH EIVE+LL A N D G +PLHLAA G++
Sbjct: 34 MANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
+IV VLL HG +VN K +TA + G+ + L
Sbjct: 94 EIVEVLLKHG---ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRI 404
+PLHLA++ GH +V LL+ G DVN G T LH AA+ G LE+V+ LL+HGAD+
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNA 108
Query: 405 IDSKHNTVLDL 415
D T D+
Sbjct: 109 QDKFGKTAFDI 119
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA++ GH L+ G N +D+ G + LH AA+ GH EIVE+LL + A N
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVL 254
D G + ++ GN D+ +L
Sbjct: 109 QDKFGKTAFDISIDNGNEDLAEIL 132
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 37/149 (24%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G D VR+L+ +G +VN + +D T LH AAQ GH +V LL++ D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
+ T L LAA G LE V+ L L+ G
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVL----------------------------------LKHG 103
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELL 221
N QD G +A + NG++++ E+L
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
EIVE+LL A N D G +PLHLAA G+++IV VLL HG +VN K +TA
Sbjct: 61 EIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHG---ADVNAQDKFGKTAF 117
Query: 107 HCAAQYGHTPVVSQL 121
+ G+ + L
Sbjct: 118 DISIDNGNEDLAEIL 132
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D + T L LAAQ G LE V+ L++ +
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY------GADVN 74
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
A+ F +PLHLA+ GH +V LL+ G DVN + G
Sbjct: 75 AEDN-FGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFG 113
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 6/95 (6%)
Query: 179 LHLASRNG------HSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVD 232
LH+AS G + L+ G NV+D +G++ LH A +GH ++VELLL ++A N
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 233 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLM 267
+ SPLH AA G+VDIV++LL +G S VN+
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 272 ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLI 331
ET LH A+ G P V LL++ DP +++ T L A +G L+ V+ L++ H L+
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALV 69
Query: 332 QAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVN 371
+ SPLH A++NGH +V LL G N
Sbjct: 70 NTTGYQND------SPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
G + LH A++ G VE LL N + N+ D G +PLH A G++ +V +LL H
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL- 68
Query: 262 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC 295
VN N++ LH AA+ GH +V LL +
Sbjct: 69 --VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 40/140 (28%)
Query: 103 ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLI 162
ET LH A+ G P V LL++ DP +++ T L A +G L+ V+ L++ H L+
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALV 69
Query: 163 QAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGY---SALHHAALNGHKEIVE 219
+++GY S LH AA NGH +IV+
Sbjct: 70 ------------------------------------NTTGYQNDSPLHDAAKNGHVDIVK 93
Query: 220 LLLTNEASTNIVDTKGSSPL 239
LLL+ AS N V+ G P+
Sbjct: 94 LLLSYGASRNAVNIFGLRPV 113
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
VE LL N + N+ D G +PLH A G++ +V +LL H V N N++ LH
Sbjct: 26 VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV---NTTGYQNDSPLHD 82
Query: 109 AAQYGHTPVVSQLLEHSC 126
AA+ GH +V LL +
Sbjct: 83 AAKNGHVDIVKLLLSYGA 100
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLM 98
++VELLL ++A N + SPLH AA G+VDIV++LL +G S VN+
Sbjct: 57 KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 348 LHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGA 400
LH+AS G V LLQ G D N++ +G T LHEA G L+VV+ LL+H A
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
G + LH+AA NGH E V+ LL+ A N G++PLHLAA G+ +IV++LL G
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG--- 65
Query: 262 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIR 300
+VN +KD T H A + GH +V L D R
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLH A++NGH+ L +G N + G + LH AA NGH EIV+LLL A N
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
G++P HLA G+ +IV++L G V
Sbjct: 71 RSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 268 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 327
+KD T LH AA+ GH V +LL D R+ T L LAA+ G E V L+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 328 PGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT 374
+ NAR++ +P HLA +NGH +V L G DVN R+
Sbjct: 66 ADV----NARSKDG---NTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRI 404
+PLH A++NGH V +LL G DVN R+ G T LH AA G E+VK LL GAD+
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 405 IDSKHNTVLDLLKQFPPHAV 424
NT L K+ H +
Sbjct: 71 RSKDGNTPEHLAKKNGHHEI 90
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
E V+ LL+ A N G++PLHLAA G+ +IV++LL G +VN +KD T
Sbjct: 23 EEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG---ADVNARSKDGNTPE 79
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIR 131
H A + GH +V L D R
Sbjct: 80 HLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
G++PLH AA G+ + V+ LL G +VN +KD T LH AA+ GH +V LL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGA---DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTL 154
D R+ T LA + G E V L
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 99 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 158
+KD T LH AA+ GH V +LL D R+ T L LAA+ G E V L+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 159 PGLIQAYNARAQSTLFPASPLHLASRNGH 187
+ NAR++ +P HLA +NGH
Sbjct: 66 ADV----NARSKDG---NTPEHLAKKNGH 87
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 65.9 bits (159), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N +D G + L+ A +GH EIVE+LL N A N VD G +PLHLAA+ G++
Sbjct: 34 MANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHL 93
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETAL 275
+I VLL HG +VN K +TA
Sbjct: 94 EIAEVLLKHG---ADVNAQDKFGKTAF 117
Score = 58.2 bits (139), Expect = 9e-09, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G +PL+LA G+++IV VLL +G +VN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG---ADVN 74
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
+ T LH AA GH + LL+H D ++ +TA D++ G + + L
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRI 404
+PL+LA+ +GH +V LL+ G DVN A G T LH AA G LE+ + LL+HGAD+
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA 108
Query: 405 IDSKHNTVLDL 415
D T D+
Sbjct: 109 QDKFGKTAFDI 119
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
V +L+ N A N D G +PL+LA G+++IV VLL +G +VN + T LH
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA---DVNAVDAIGFTPLHL 86
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
AA GH + LL+H D ++ +TA D++ G + + L
Sbjct: 87 AAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PL+LA+ +GH L+ G N D+ G++ LH AA GH EI E+LL + A N
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA 108
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVL 254
D G + ++ GN D+ +L
Sbjct: 109 QDKFGKTAFDISIGNGNEDLAEIL 132
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSG-------PL-------AREIVELLLTNEASTNI 61
+ LLEAAR G V +++ A + PL EIVE+LL N A N
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
VD G +PLHLAA+ G+++I VLL HG +VN K +TA
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHG---ADVNAQDKFGKTAF 117
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 37/149 (24%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G D VR+L+ +G +VN + T L+ A +GH +V LL++ D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
+ T L LAA G LE + L L+ G
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVL----------------------------------LKHG 103
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELL 221
N QD G +A + NG++++ E+L
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN + T L+ A +GH +V LL++ D +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 302 SRHETALDLAAQYGRLETVDTLVR 325
+ T L LAA G LE + L++
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLK 101
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
AA+ G V L+ + D ++ T L LA +G LE V+ L++ + A +A
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDA- 78
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
+PLHLA+ GH + LL+ G DVN + G
Sbjct: 79 -----IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L RG +++D +G++ +H AA G + ++ LL N+A NI D +G+ PLHLAA G++
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHL 116
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 288
+V L+ H S NV +TA A YG VVS
Sbjct: 117 RVVEFLVKHTAS--NVGHRNHKGDTACDLARLYGRNEVVS 154
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 38 AKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNL 97
A R+G L + ++ LL N+A NI D +G+ PLHLAA G++ +V L+ H S NV
Sbjct: 77 AARAGFL--DTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--NVGH 132
Query: 98 MTKDNETALHCAAQYGHTPVVS 119
+TA A YG VVS
Sbjct: 133 RNHKGDTACDLARLYGRNEVVS 154
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 63/156 (40%), Gaps = 38/156 (24%)
Query: 77 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136
GN +I R LL G N +L + +H AA+ G + LLE+ D I ++
Sbjct: 48 GNPEIARRLLLRGA---NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGN 104
Query: 137 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196
L LAA+ G L V+ LV+ H AS GH
Sbjct: 105 LPLHLAAKEGHLRVVEFLVK-----------------------HTASNVGH--------- 132
Query: 197 VQDSSGYSALHHAALNGHKEIVELLLTNEA--STNI 230
++ G +A A L G E+V L+ N A +TN+
Sbjct: 133 -RNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 246 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 305
GN +I R LL G N +L + +H AA+ G + LLE+ D I ++
Sbjct: 48 GNPEIARRLLLRGA---NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGN 104
Query: 306 TALDLAAQYGRLETVDTLVR 325
L LAA+ G L V+ LV+
Sbjct: 105 LPLHLAAKEGHLRVVEFLVK 124
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 355 GHRSVVARLLQAGLDVNIRTASGTA-LHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
G+ + RLL G + +++ +G A +H+AA G L+ ++TLLE+ AD+ I D++ N L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 414 DL 415
L
Sbjct: 108 HL 109
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 18/142 (12%)
Query: 15 DQDLLEAARNGNIQVVEKILSQRA--------KRSGPL-------AREIVELLLTNEAST 59
D+ LLEAA+ G+++ V+K+ + ++ ++S PL +VE LL + A
Sbjct: 11 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 70
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
+ D G PLH A G+ ++ +L+ HG +V NV + K T LH AA G +
Sbjct: 71 HAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWK--FTPLHEAAAKGKYEICK 127
Query: 120 QLLEHSCDPTIRNSRHETALDL 141
LL+H DPT +N T LDL
Sbjct: 128 LLLQHGADPTKKNRDGNTPLDL 149
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 61/127 (48%)
Query: 132 NSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRR 191
NS + L AA+ G +ETV L + R + L A+ + S + L+
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 192 GPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV 251
G + +D G LH+A GH E+ ELL+ + A N+ D +PLH AA G +I
Sbjct: 67 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 126
Query: 252 RVLLCHG 258
++LL HG
Sbjct: 127 KLLLQHG 133
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 278 AAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNA 336
AA+ G V +L S + R T L AA Y R+ V+ L++ + +A
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV----HA 72
Query: 337 RAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT-ASGTALHEAALCGKLEVVKTL 395
+ + L P LH A GH V L++ G VN+ T LHEAA GK E+ K L
Sbjct: 73 KDKGGLVP---LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 129
Query: 396 LEHGADLRIIDSKHNTVLDLLK 417
L+HGAD + NT LDL+K
Sbjct: 130 LQHGADPTKKNRDGNTPLDLVK 151
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 196 NVQDSSGYSA--LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRV 253
N +D G + LH AA +VE LL + A + D G PLH A G+ ++ +
Sbjct: 36 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 95
Query: 254 LLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDL 310
L+ HG +V NV + K T LH AA G + LL+H DPT +N T LDL
Sbjct: 96 LVKHG-AVVNVADLWK--FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 70/182 (38%), Gaps = 37/182 (20%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G+V+ V+ L C SV N + T LH AA Y VV LL+H D ++
Sbjct: 17 AAKAGDVETVKKL-CTVQSV-NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 74
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
L A YG E + LV+ G
Sbjct: 75 KGGLVPLHNACSYGHYEVAELLVK----------------------------------HG 100
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
NV D ++ LH AA G EI +LLL + A + G++PL L G+ DI
Sbjct: 101 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQD 159
Query: 253 VL 254
+L
Sbjct: 160 LL 161
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 20/104 (19%)
Query: 6 CVVFSVMGKDQD------LLEAARNGNIQVVEKILSQ----RAKRSGPLA---------- 45
C V SV +D + L AA + VVE +L AK G L
Sbjct: 30 CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGH 89
Query: 46 REIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 89
E+ ELL+ + A N+ D +PLH AA G +I ++LL HG
Sbjct: 90 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 133
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 18/142 (12%)
Query: 15 DQDLLEAARNGNIQVVEKILSQRA--------KRSGPL-------AREIVELLLTNEAST 59
D+ LLEAA+ G+++ V+K+ + ++ ++S PL +VE LL + A
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
+ D G PLH A G+ ++ +L+ HG +V NV + K T LH AA G +
Sbjct: 69 HAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWK--FTPLHEAAAKGKYEICK 125
Query: 120 QLLEHSCDPTIRNSRHETALDL 141
LL+H DPT +N T LDL
Sbjct: 126 LLLQHGADPTKKNRDGNTPLDL 147
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 61/127 (48%)
Query: 132 NSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRR 191
NS + L AA+ G +ETV L + R + L A+ + S + L+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 192 GPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV 251
G + +D G LH+A GH E+ ELL+ + A N+ D +PLH AA G +I
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124
Query: 252 RVLLCHG 258
++LL HG
Sbjct: 125 KLLLQHG 131
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 278 AAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNA 336
AA+ G V +L S + R T L AA Y R+ V+ L++ + +A
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV----HA 70
Query: 337 RAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT-ASGTALHEAALCGKLEVVKTL 395
+ + L P LH A GH V L++ G VN+ T LHEAA GK E+ K L
Sbjct: 71 KDKGGLVP---LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127
Query: 396 LEHGADLRIIDSKHNTVLDLLK 417
L+HGAD + NT LDL+K
Sbjct: 128 LQHGADPTKKNRDGNTPLDLVK 149
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 196 NVQDSSGYSA--LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRV 253
N +D G + LH AA +VE LL + A + D G PLH A G+ ++ +
Sbjct: 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 93
Query: 254 LLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDL 310
L+ HG +V NV + K T LH AA G + LL+H DPT +N T LDL
Sbjct: 94 LVKHG-AVVNVADLWK--FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 70/182 (38%), Gaps = 37/182 (20%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G+V+ V+ L C SV N + T LH AA Y VV LL+H D ++
Sbjct: 15 AAKAGDVETVKKL-CTVQSV-NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 72
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
L A YG E + LV+ G
Sbjct: 73 KGGLVPLHNACSYGHYEVAELLVK----------------------------------HG 98
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
NV D ++ LH AA G EI +LLL + A + G++PL L G+ DI
Sbjct: 99 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQD 157
Query: 253 VL 254
+L
Sbjct: 158 LL 159
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKG--SSPLHLAAWTGNVDIVRVLLCHGPSVPN 263
L AA G E V+ L T + S N D +G S+PLH AA V +V LL HG +
Sbjct: 12 LLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG---AD 67
Query: 264 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
V+ K LH A YGH V L++H + + T L AA G+ E L
Sbjct: 68 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127
Query: 324 VR 325
++
Sbjct: 128 LQ 129
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 20/104 (19%)
Query: 6 CVVFSVMGKDQD------LLEAARNGNIQVVEKILSQ----RAKRSGPLA---------- 45
C V SV +D + L AA + VVE +L AK G L
Sbjct: 28 CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGH 87
Query: 46 REIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 89
E+ ELL+ + A N+ D +PLH AA G +I ++LL HG
Sbjct: 88 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 272 ETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 330
E+ L AA+ +S+LL+ C+ R + ETAL +AA Y LE L+ P L
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 331 IQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASGTALHE-------- 382
+ + + LH+A N + ++V LL G V+ R A+G+ H
Sbjct: 64 V--FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR-ATGSVFHYRPHNLIYY 120
Query: 383 -------AALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLL 416
AA G E+V+ L+EHGAD+R DS NTVL +L
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 68/173 (39%), Gaps = 43/173 (24%)
Query: 103 ETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 161
E+ L AA+ +S+LL+ C+ R + ETAL +AA Y LE L+ P L
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 162 IQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
+ P+ + G +ALH A +N + +V L
Sbjct: 64 V-------------FEPM----------------TSELYEGQTALHIAVINQNVNLVRAL 94
Query: 222 LTNEASTNIVDT-------------KGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
L AS + T G PL AA G+ +IVR+L+ HG +
Sbjct: 95 LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI 147
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 30/160 (18%)
Query: 177 SPLHLASRNG-----HSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTN 229
SPL LA++ L + G V + + G +ALH AAL + E +L+ EA+
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLM--EAAPE 62
Query: 230 IVD-------TKGSSPLHLAAWTGNVDIVRVLLCHGPSV------------PNVNLMTKD 270
+V +G + LH+A NV++VR LL G SV P+ NL+
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH-NLIYY- 120
Query: 271 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDL 310
E L AA G +V L+EH D ++S T L +
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 36/163 (22%)
Query: 12 MGKDQDLLEAARNGNIQVVEKILS-------QRAKRSGPLAREIVELLLTNEASTNIVDT 64
M + LL AA+ ++Q + K+L QR G A I L EA+ +++
Sbjct: 1 MIWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEAAMVLMEA 59
Query: 65 --------------KGSSPLHLAAWTGNVDIVRVLLCHGPSV------------PNVNLM 98
+G + LH+A NV++VR LL G SV P+ NL+
Sbjct: 60 APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH-NLI 118
Query: 99 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDL 141
E L AA G +V L+EH D ++S T L +
Sbjct: 119 YY-GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
D G S LH AA GH E+LL S + +PLH+AA G+ +IV VLL HG
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 259 PSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLE 318
V +++ TALH A ++ H VV L+++ D ++ +TA D++ G +
Sbjct: 91 ADVNAKDMLKM---TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED 147
Query: 319 TVDTL 323
+ L
Sbjct: 148 LAEIL 152
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
AA G + V +L+ N A D G+SPLHLAA G+ VLL G S + T
Sbjct: 9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---DART 64
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
K + T LH AA GH +V LL+H D ++ TAL A ++ E V+ L++
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 308 LDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAG 367
L LAAQYG T + L+R A +R T +PLH+A+ GH ++V LL+ G
Sbjct: 38 LHLAAQYGHFSTTEVLLR-------AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 368 LDVNIRTA-SGTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
DVN + TALH A EVV+ L+++GAD+ T D+
Sbjct: 91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDI 139
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
V +L+ N A D G+SPLHLAA G+ VLL G S + TK + T LH
Sbjct: 18 VRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---DARTKVDRTPLHM 73
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
AA GH +V LL+H D ++ TAL A ++ E V+ L++
Sbjct: 74 AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 139 LDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHS------LRRG 192
L LAAQYG T + L+R A +R T +PLH+A+ GH+ L+ G
Sbjct: 38 LHLAAQYGHFSTTEVLLR-------AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
N +D +ALH A + H+E+VELL+ A + + ++ GN D+
Sbjct: 91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150
Query: 253 VL 254
+L
Sbjct: 151 IL 152
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRS------GPLA-------REIVELLLTNEASTNIV 62
+ LLEAAR G V +++ A + PL E+LL S +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
+PLH+AA G+ +IV VLL HG V +++ TALH A ++ H VV L+
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM---TALHWATEHNHQEVVELLI 120
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
++ D ++ +TA D++ G + + L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 161 LIQAYNARAQSTLFPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGH 214
++ A A + SPLHLA++ GH LR G + + + LH AA GH
Sbjct: 20 ILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79
Query: 215 KEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
IVE+LL + A N D + LH A + ++V +L+ +G V
Sbjct: 80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 330 LIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT-ASGTALHEAALCGK 388
++ A A + SPLHLA++ GH S LL+AG+ + RT T LH AA G
Sbjct: 20 ILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79
Query: 389 LEVVKTLLEHGADLRIIDSKHNTVL 413
+V+ LL+HGAD+ D T L
Sbjct: 80 ANIVEVLLKHGADVNAKDMLKMTAL 104
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L RG +++D +G++ +H AA G + ++ LL +A NI D +G+ PLHLAA G++
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 288
+V L+ H S NV +TA A YG VVS
Sbjct: 117 RVVEFLVKHTAS--NVGHRNHKGDTACDLARLYGRNEVVS 154
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 38 AKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNL 97
A R+G L + ++ LL +A NI D +G+ PLHLAA G++ +V L+ H S NV
Sbjct: 77 AARAGQL--DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--NVGH 132
Query: 98 MTKDNETALHCAAQYGHTPVVS 119
+TA A YG VVS
Sbjct: 133 RNHKGDTACDLARLYGRNEVVS 154
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 62/156 (39%), Gaps = 38/156 (24%)
Query: 77 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136
GN +I R LL G N +L + +H AA+ G + LLE D I ++
Sbjct: 48 GNPEIARRLLLRGA---NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGN 104
Query: 137 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196
L LAA+ G L V+ LV+ H AS GH
Sbjct: 105 LPLHLAAKEGHLRVVEFLVK-----------------------HTASNVGH--------- 132
Query: 197 VQDSSGYSALHHAALNGHKEIVELLLTNEA--STNI 230
++ G +A A L G E+V L+ N A +TN+
Sbjct: 133 -RNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 246 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 305
GN +I R LL G N +L + +H AA+ G + LLE D I ++
Sbjct: 48 GNPEIARRLLLRGA---NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGN 104
Query: 306 TALDLAAQYGRLETVDTLVR 325
L LAA+ G L V+ LV+
Sbjct: 105 LPLHLAAKEGHLRVVEFLVK 124
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 355 GHRSVVARLLQAGLDVNIRTASGTA-LHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
G+ + RLL G + +++ +G A +H+AA G+L+ ++TLLE AD+ I D++ N L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 414 DL 415
L
Sbjct: 108 HL 109
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L RG +++D +G++ +H AA G + ++ LL +A NI D +G+ PLHLAA G++
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 288
+V L+ H S NV +TA A YG VVS
Sbjct: 117 RVVEFLVKHTAS--NVGHRNHKGDTACDLARLYGRNEVVS 154
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 38 AKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNL 97
A R+G L + ++ LL +A NI D +G+ PLHLAA G++ +V L+ H S NV
Sbjct: 77 AARAGFL--DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--NVGH 132
Query: 98 MTKDNETALHCAAQYGHTPVVS 119
+TA A YG VVS
Sbjct: 133 RNHKGDTACDLARLYGRNEVVS 154
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 58/151 (38%), Gaps = 36/151 (23%)
Query: 77 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136
GN +I R LL G N +L + +H AA+ G + LLE D I ++
Sbjct: 48 GNPEIARRLLLRGA---NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 137 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196
L LAA+ G L V+ LV+ H AS GH
Sbjct: 105 LPLHLAAKEGHLRVVEFLVK-----------------------HTASNVGH--------- 132
Query: 197 VQDSSGYSALHHAALNGHKEIVELLLTNEAS 227
++ G +A A L G E+V L+ N A
Sbjct: 133 -RNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 246 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 305
GN +I R LL G N +L + +H AA+ G + LLE D I ++
Sbjct: 48 GNPEIARRLLLRGA---NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 306 TALDLAAQYGRLETVDTLVR 325
L LAA+ G L V+ LV+
Sbjct: 105 LPLHLAAKEGHLRVVEFLVK 124
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 355 GHRSVVARLLQAGLDVNIRTASGTA-LHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
G+ + RLL G + +++ +G A +H+AA G L+ ++TLLE AD+ I D++ N L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 414 DL 415
L
Sbjct: 108 HL 109
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 19/219 (8%)
Query: 194 GANV---QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDI 250
GANV ++ G++ LH+A ++IVELLL + A + G++P LAA G+V +
Sbjct: 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKL 107
Query: 251 VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE----- 305
+++ L G V + TA AA YG + L + + +R E
Sbjct: 108 LKLFLSKGADVNECDFY---GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL 164
Query: 306 -----TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVV 360
TAL AA+ G +E + L+ + A + ++ L A L + + ++
Sbjct: 165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA--LLSSDDSDVEAIT 222
Query: 361 ARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEH 398
LL G DVN+R G T L A L +V+ LLE
Sbjct: 223 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 130/336 (38%), Gaps = 60/336 (17%)
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDN-ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136
+VD+V+ LL G NVN ++ T LH A Q +V LL H DP +R
Sbjct: 37 DVDLVQQLLEGGA---NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA 93
Query: 137 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196
T LAA G ++ + LF L +G N
Sbjct: 94 TPFILAAIAGSVKLL--------------------KLF--------------LSKGADVN 119
Query: 197 VQDSSGYSALHHAALNGHKEIVELLLTNEASTNI----------VDTKGSSPLHLAAWTG 246
D G++A AA+ G + ++ L A+ N+ + G++ L AA G
Sbjct: 120 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179
Query: 247 NVDIVRVLLCH-GPSVPNVNLMTKDNET-ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 304
+V+++++LL G V + M ++ AL + + LL+H D +R R
Sbjct: 180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 239
Query: 305 ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLL 364
+T L LA + L V L+ I ++ ++ L A L L + + L
Sbjct: 240 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL------KKIAELLC 293
Query: 365 QAGLDVNIRTASGTALHEAALCGKLEVVKTLLEHGA 400
+ G T G + A +VK LL HGA
Sbjct: 294 KRG----ASTDCGDLVMTARRNYDHSLVKVLLSHGA 325
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 106/279 (37%), Gaps = 52/279 (18%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAW 75
Q LLE N N Q E + +IVELLL + A + G++P LAA
Sbjct: 42 QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101
Query: 76 TGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 135
G+V ++++ L G V + TA AA YG + L + + +R
Sbjct: 102 AGSVKLLKLFLSKGADVNECDFY---GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 158
Query: 136 E----------TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
E TAL AA+ G +E + L+
Sbjct: 159 EDQERLRKGGATALMDAAEKGHVEVLKILLD----------------------------- 189
Query: 186 GHSLRRGPGANVQDSSGYSALHHAALNGHKEIVE----LLLTNEASTNIVDTKGSSPLHL 241
G N D+ G +AL HA L+ VE LLL + A N+ +G +PL L
Sbjct: 190 ----EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 245
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ 280
A ++ +V+ LL +N D +TAL A +
Sbjct: 246 AVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVE 282
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L RG +++D +G++ +H AA G + ++ LL +A NI D +G+ PLHLAA G++
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 288
+V L+ H S NV +TA A YG VVS
Sbjct: 117 RVVEFLVKHTAS--NVGHRNHKGDTACDLARLYGRNEVVS 154
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 38 AKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNL 97
A R+G L + ++ LL +A NI D +G+ PLHLAA G++ +V L+ H S NV
Sbjct: 77 AARAGFL--DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--NVGH 132
Query: 98 MTKDNETALHCAAQYGHTPVVS 119
+TA A YG VVS
Sbjct: 133 RNHKGDTACDLARLYGRNEVVS 154
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 62/156 (39%), Gaps = 38/156 (24%)
Query: 77 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136
GN +I R LL G N +L + +H AA+ G + LLE D I ++
Sbjct: 48 GNPEIARRLLLRGA---NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 137 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196
L LAA+ G L V+ LV+ H AS GH
Sbjct: 105 LPLHLAAKEGHLRVVEFLVK-----------------------HTASNVGH--------- 132
Query: 197 VQDSSGYSALHHAALNGHKEIVELLLTNEA--STNI 230
++ G +A A L G E+V L+ N A +TN+
Sbjct: 133 -RNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 246 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 305
GN +I R LL G N +L + +H AA+ G + LLE D I ++
Sbjct: 48 GNPEIARRLLLRGA---NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 306 TALDLAAQYGRLETVDTLVR 325
L LAA+ G L V+ LV+
Sbjct: 105 LPLHLAAKEGHLRVVEFLVK 124
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 355 GHRSVVARLLQAGLDVNIRTASGTA-LHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
G+ + RLL G + +++ +G A +H+AA G L+ ++TLLE AD+ I D++ N L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 414 DL 415
L
Sbjct: 108 HL 109
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 198 QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257
+D G +AL A N I E LL+ ++ N D G +PL + G ++ LL H
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 258 GPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRL 317
G +V + NL + ET L A++YG + +V +LLE D + R+ TA A +GR
Sbjct: 124 GANVNDRNL---EGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180
Query: 318 ETVDTL 323
E +
Sbjct: 181 EVIKIF 186
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
I E LL+ ++ N D G +PL + G ++ LL HG +V + NL + ET L
Sbjct: 83 IAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL---EGETPLI 139
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
A++YG + +V +LLE D + R+ TA A +GR E +
Sbjct: 140 VASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 44/203 (21%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
N +DS + L A + G + ++ L+ N D +GS+ L A + I LL
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 256 CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG 315
G NVN +T L + +G++ + LLEH + RN ET L +A++YG
Sbjct: 89 SKGS---NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145
Query: 316 RLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTA 375
R E +V +LL+ G D++ R
Sbjct: 146 RSE----------------------------------------IVKKLLELGADISARDL 165
Query: 376 SG-TALHEAALCGKLEVVKTLLE 397
+G TA A + G+ EV+K E
Sbjct: 166 TGLTAEASARIFGRQEVIKIFTE 188
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
D +GS+ L A + I LL G NVN +T L + +G++ + LL
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGS---NVNTKDFSGKTPLMWSIIFGYSEMSYFLL 121
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
EH + RN ET L +A++YGR E V L+
Sbjct: 122 EHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 271 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 330
N T L A G + +L+E+ ++ TAL A + RL + L L
Sbjct: 35 NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL------L 88
Query: 331 IQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKL 389
+ N + +PL + G+ + LL+ G +VN R G T L A+ G+
Sbjct: 89 SKGSNVNTKD-FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Query: 390 EVVKTLLEHGADL 402
E+VK LLE GAD+
Sbjct: 148 EIVKKLLELGADI 160
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 19/219 (8%)
Query: 194 GANV---QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDI 250
GANV ++ G++ LH+A ++IVELLL + A + G++P LAA G+V +
Sbjct: 28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKL 87
Query: 251 VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE----- 305
+++ L G V + TA AA YG + L + + +R E
Sbjct: 88 LKLFLSKGADVNECDFY---GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL 144
Query: 306 -----TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVV 360
TAL AA+ G +E + L+ + A + ++ L A L + + ++
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA--LLSSDDSDVEAIT 202
Query: 361 ARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEH 398
LL G DVN+R G T L A L +V+ LLE
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 111/252 (44%), Gaps = 22/252 (8%)
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNE-TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136
+VD+V+ LL G NVN ++ T LH A Q +V LL H DP +R
Sbjct: 17 DVDLVQQLLEGGA---NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA 73
Query: 137 TALDLAAQYGRLETVDTLVRTHPGL----IQAYNARAQSTLF-PASPLHLASRNGH--SL 189
T LAA G ++ + + + + A ++ ++ L + G +L
Sbjct: 74 TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133
Query: 190 RRGPGANVQ--DSSGYSALHHAALNGHKEIVELLLTNE-ASTNIVDTKGSSPL-HLAAWT 245
RR + + G +AL AA GH E++++LL A N D G + L H +
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193
Query: 246 GNVD---IVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRN 301
+ D I +LL HG +VN+ + +T L A + H +V +LLE + +
Sbjct: 194 DDSDVEAITHLLLDHG---ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 250
Query: 302 SRHETALDLAAQ 313
S +TAL LA +
Sbjct: 251 SDGKTALLLAVE 262
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 106/279 (37%), Gaps = 52/279 (18%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAW 75
Q LLE N N Q E + +IVELLL + A + G++P LAA
Sbjct: 22 QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI 81
Query: 76 TGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 135
G+V ++++ L G V + TA AA YG + L + + +R
Sbjct: 82 AGSVKLLKLFLSKGADVNECDFY---GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 138
Query: 136 E----------TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
E TAL AA+ G +E + L+
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLD----------------------------- 169
Query: 186 GHSLRRGPGANVQDSSGYSALHHAALNGHKEIVE----LLLTNEASTNIVDTKGSSPLHL 241
G N D+ G +AL HA L+ VE LLL + A N+ +G +PL L
Sbjct: 170 ----EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ 280
A ++ +V+ LL +N D +TAL A +
Sbjct: 226 AVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVE 262
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 108/253 (42%), Gaps = 39/253 (15%)
Query: 63 DTKGSSPLHLAAWTGNVDIV-RVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
D G +PLH+A GN+ V R++ +++ +T LH A VV L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASP--L 179
+ P + +TA LA ++ P ++A L A+P L
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEH-----------RSPTCLRAL-------LDSAAPGTL 107
Query: 180 HLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTK-GSSP 238
L +RN G +ALH A +E V+LLL A + VD K G SP
Sbjct: 108 DLEARN--------------YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSP 153
Query: 239 LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPT 298
L A ++ +V++LL HG NVN +ALH A+ G P+V L+ D +
Sbjct: 154 LIHAVENNSLSMVQLLLQHGA---NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 210
Query: 299 IRNSRHETALDLA 311
++N ++T L +A
Sbjct: 211 LKNCHNDTPLMVA 223
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 18/224 (8%)
Query: 199 DSSGYSALHHAALNGH----KEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVL 254
D G + LH A + G+ +V L +I + +PLHLA T +VR+L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 255 LCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTI----RNSRHETALDL 310
+ G S ++ + +TA H A ++ + LL+ + T+ RN TAL +
Sbjct: 66 VTAGASPMALD---RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 311 AAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDV 370
A ETV L+ I A + ++ SPL A N S+V LLQ G +V
Sbjct: 123 AVNTECQETVQLLLERGAD-IDAVDIKSGR-----SPLIHAVENNSLSMVQLLLQHGANV 176
Query: 371 NIRTASGT-ALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
N + SG+ ALH A+ G L +V+TL+ GAD + + ++T L
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL 220
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 7/214 (3%)
Query: 43 PLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDN 102
P +V L +I + +PLHLA T +VR+L+ G S ++ +
Sbjct: 23 PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD---RHG 79
Query: 103 ETALHCAAQYGHTPVVSQLLEHSCDPTI----RNSRHETALDLAAQYGRLETVDTLVRTH 158
+TA H A ++ + LL+ + T+ RN TAL +A ETV L+
Sbjct: 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139
Query: 159 PGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIV 218
+ +S L A + S L+ G N Q SG SALH A+ G +V
Sbjct: 140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLV 199
Query: 219 ELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
L+ + A +++ + +PL +A +DI+R
Sbjct: 200 RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%)
Query: 129 TIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHS 188
++ NS + L AA+ G +ETV L + R + L A+ + S +
Sbjct: 6 SLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 65
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L+ G + +D G LH+A GH E+ ELL+ + A N+ D +PLH AA G
Sbjct: 66 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 125
Query: 249 DIVRVLLCHG 258
+I ++LL HG
Sbjct: 126 EICKLLLQHG 135
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 278 AAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNA 336
AA+ G V +L S + R T L AA Y R+ V+ L++ + +A
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV----HA 74
Query: 337 RAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT-ASGTALHEAALCGKLEVVKTL 395
+ + L P LH A GH V L++ G VN+ T LHEAA GK E+ K L
Sbjct: 75 KDKGGLVP---LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 131
Query: 396 LEHGADLRIIDSKHNTVLDLLK 417
L+HGAD + NT LDL+K
Sbjct: 132 LQHGADPTKKNRDGNTPLDLVK 153
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 15 DQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKG--SSPLHL 72
D+ LLEAA+ G+++ V+K+ + + S N D +G S+PLH
Sbjct: 13 DRQLLEAAKAGDVETVKKLCTVQ--------------------SVNCRDIEGRQSTPLHF 52
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA V +V LL HG +V+ K LH A YGH V L++H + +
Sbjct: 53 AAGYNRVSVVEYLLQHG---ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 109
Query: 133 SRHETALDLAAQYGRLETVDTLVR 156
T L AA G+ E L++
Sbjct: 110 LWKFTPLHEAAAKGKYEICKLLLQ 133
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 6/134 (4%)
Query: 194 GANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKG--SSPLHLAAWTGNVDIV 251
G ++ +S L AA G E V+ L T + S N D +G S+PLH AA V +V
Sbjct: 4 GISLGNSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVV 62
Query: 252 RVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 311
LL HG +V+ K LH A YGH V L++H + + T L A
Sbjct: 63 EYLLQHGA---DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 119
Query: 312 AQYGRLETVDTLVR 325
A G+ E L++
Sbjct: 120 AAKGKYEICKLLLQ 133
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 70/182 (38%), Gaps = 37/182 (20%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G+V+ V+ L C SV N + T LH AA Y VV LL+H D ++
Sbjct: 19 AAKAGDVETVKKL-CTVQSV-NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 76
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
L A YG E + LV+ G
Sbjct: 77 KGGLVPLHNACSYGHYEVAELLVK----------------------------------HG 102
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
NV D ++ LH AA G EI +LLL + A + G++PL L G+ DI
Sbjct: 103 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQD 161
Query: 253 VL 254
+L
Sbjct: 162 LL 163
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 89
E+ ELL+ + A N+ D +PLH AA G +I ++LL HG
Sbjct: 93 EVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 135
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 18/148 (12%)
Query: 21 AARNGNIQVVEKILSQRA------KRSGPLAREIVEL--------LLTNEASTNIVDTKG 66
AA G++Q V ++L + R G A +++ LL AS N+ D G
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASG 76
Query: 67 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC 126
+SP+H AA TG +D ++VL+ HG +VN + +H A + GH+ VVS L S
Sbjct: 77 TSPVHDAARTGFLDTLKVLVEHG---ADVNALDSTGSLPIHLAIREGHSSVVSFLAPES- 132
Query: 127 DPTIRNSRHETALDLAAQYGRLETVDTL 154
D R++ T L+LA Q G +D L
Sbjct: 133 DLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 21/164 (12%)
Query: 142 AAQYGRLETVDTLVR---THPGLIQAYNARA-QSTLF--PASPLHLASRNGHSLRRGPGA 195
AA G ++ V L+ HP + + A Q +F PA L L L++G
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALEL-------LKQGASP 69
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
NVQD+SG S +H AA G + +++L+ + A N +D+ GS P+HLA G+ +V L
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL- 128
Query: 256 CHGPSVPNVNLMTKDNE--TALHCAAQYGHTPVVSQLLEHSCDP 297
P +L +D T L A Q G ++ L H P
Sbjct: 129 -----APESDLHHRDASGLTPLELARQRGAQNLMDILQGHMMIP 167
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 311 AAQYGRLETVDTLVR---THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAG 367
AA G ++ V L+ HP + + A + SP +V LL+ G
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSP----------AVALELLKQG 66
Query: 368 LDVNIRTASGTA-LHEAALCGKLEVVKTLLEHGADLRIIDS 407
N++ ASGT+ +H+AA G L+ +K L+EHGAD+ +DS
Sbjct: 67 ASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDS 107
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASGT-ALHEAALCGKLEVVKTLLEHGADLRI 404
SP+H A+R G + L++ G DVN ++G+ +H A G VV + L +DL
Sbjct: 78 SPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV-SFLAPESDLHH 136
Query: 405 IDSKHNTVLDLLKQFPPHAVHDI 427
D+ T L+L +Q + DI
Sbjct: 137 RDASGLTPLELARQRGAQNLMDI 159
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 18/148 (12%)
Query: 21 AARNGNIQVVEKILSQRA------KRSGPLAREIVEL--------LLTNEASTNIVDTKG 66
AA G++Q V ++L + R G A +++ LL AS N+ D G
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASG 74
Query: 67 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC 126
+SP+H AA TG +D ++VL+ HG +VN + +H A + GH+ VVS L S
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHG---ADVNALDSTGSLPIHLAIREGHSSVVSFLAPES- 130
Query: 127 DPTIRNSRHETALDLAAQYGRLETVDTL 154
D R++ T L+LA Q G +D L
Sbjct: 131 DLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 21/164 (12%)
Query: 142 AAQYGRLETVDTLVR---THPGLIQAYNARA-QSTLF--PASPLHLASRNGHSLRRGPGA 195
AA G ++ V L+ HP + + A Q +F PA L L L++G
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALEL-------LKQGASP 67
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
NVQD+SG S +H AA G + +++L+ + A N +D+ GS P+HLA G+ +V L
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL- 126
Query: 256 CHGPSVPNVNLMTKDNE--TALHCAAQYGHTPVVSQLLEHSCDP 297
P +L +D T L A Q G ++ L H P
Sbjct: 127 -----APESDLHHRDASGLTPLELARQRGAQNLMDILQGHMMIP 165
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 311 AAQYGRLETVDTLVR---THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAG 367
AA G ++ V L+ HP + + A + SP +V LL+ G
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSP----------AVALELLKQG 64
Query: 368 LDVNIRTASGTA-LHEAALCGKLEVVKTLLEHGADLRIIDS 407
N++ ASGT+ +H+AA G L+ +K L+EHGAD+ +DS
Sbjct: 65 ASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDS 105
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASGT-ALHEAALCGKLEVVKTLLEHGADLRI 404
SP+H A+R G + L++ G DVN ++G+ +H A G VV + L +DL
Sbjct: 76 SPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV-SFLAPESDLHH 134
Query: 405 IDSKHNTVLDLLKQFPPHAVHDI 427
D+ T L+L +Q + DI
Sbjct: 135 RDASGLTPLELARQRGAQNLMDI 157
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 68/149 (45%), Gaps = 8/149 (5%)
Query: 179 LHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSP 238
L+LA+R + + N D G++ L AA +G +VE LL N A ++ S
Sbjct: 33 LYLATR----IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA 88
Query: 239 LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPT 298
L LA G DIV++LL G +VN + T L A H V LLE DPT
Sbjct: 89 LSLACSKGYTDIVKMLLDCG---VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 145
Query: 299 IRNSRHETALDLAAQYGRLETVDTLVRTH 327
I ++DLA G +V ++ +H
Sbjct: 146 IETDSGYNSMDLAVALGY-RSVQQVIESH 173
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
+VE LL N A ++ S L LA G DIV++LL G +VN + T L
Sbjct: 67 VVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV---DVNEYDWNGGTPLL 123
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 158
A H V LLE DPTI ++DLA G +V ++ +H
Sbjct: 124 YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY-RSVQQVIESH 173
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 264 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
+N ++ T L AA +G VV LL++ DP + E+AL LA G + V L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 324 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
+ + Y+ +PL A H V LL++G D I T SG
Sbjct: 105 LDCGVD-VNEYDWNG------GTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 151
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNI-RTASGTALHEAALCGKLEVVKTLLEHGADLRI 404
+PL A+ +G +VV LLQ G D + +AL A G ++VK LL+ G D+
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 405 IDSKHNTVL 413
D T L
Sbjct: 114 YDWNGGTPL 122
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 68/149 (45%), Gaps = 8/149 (5%)
Query: 179 LHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSP 238
L+LA+R + + N D G++ L AA +G +VE LL N A ++ S
Sbjct: 17 LYLATR----IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA 72
Query: 239 LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPT 298
L LA G DIV++LL G +VN + T L A H V LLE DPT
Sbjct: 73 LSLACSKGYTDIVKMLLDCG---VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129
Query: 299 IRNSRHETALDLAAQYGRLETVDTLVRTH 327
I ++DLA G +V ++ +H
Sbjct: 130 IETDSGYNSMDLAVALGY-RSVQQVIESH 157
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
+VE LL N A ++ S L LA G DIV++LL G +VN + T L
Sbjct: 51 VVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV---DVNEYDWNGGTPLL 107
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 158
A H V LLE DPTI ++DLA G +V ++ +H
Sbjct: 108 YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY-RSVQQVIESH 157
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 264 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
+N ++ T L AA +G VV LL++ DP + E+AL LA G + V L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 324 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
+ + Y+ +PL A H V LL++G D I T SG
Sbjct: 89 LDCGVD-VNEYDWNG------GTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 135
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNI-RTASGTALHEAALCGKLEVVKTLLEHGADLRI 404
+PL A+ +G +VV LLQ G D + +AL A G ++VK LL+ G D+
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 405 IDSKHNTVL 413
D T L
Sbjct: 98 YDWNGGTPL 106
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 68/149 (45%), Gaps = 8/149 (5%)
Query: 179 LHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSP 238
L+LA+R + + N D G++ L AA +G +VE LL N A ++ S
Sbjct: 15 LYLATR----IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA 70
Query: 239 LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPT 298
L LA G DIV++LL G +VN + T L A H V LLE DPT
Sbjct: 71 LSLACSKGYTDIVKMLLDCG---VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 127
Query: 299 IRNSRHETALDLAAQYGRLETVDTLVRTH 327
I ++DLA G +V ++ +H
Sbjct: 128 IETDSGYNSMDLAVALGY-RSVQQVIESH 155
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
+VE LL N A ++ S L LA G DIV++LL G +VN + T L
Sbjct: 49 VVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV---DVNEYDWNGGTPLL 105
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 158
A H V LLE DPTI ++DLA G +V ++ +H
Sbjct: 106 YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY-RSVQQVIESH 155
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 264 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
+N ++ T L AA +G VV LL++ DP + E+AL LA G + V L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 324 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
+ + Y+ +PL A H V LL++G D I T SG
Sbjct: 87 LDCGVD-VNEYDWNG------GTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 133
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNI-RTASGTALHEAALCGKLEVVKTLLEHGADLRI 404
+PL A+ +G +VV LLQ G D + +AL A G ++VK LL+ G D+
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 405 IDSKHNTVL 413
D T L
Sbjct: 96 YDWNGGTPL 104
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 94/186 (50%), Gaps = 6/186 (3%)
Query: 215 KEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA 274
K++ E+L + VDT+G++PL++A +++I + L+ G ++NL +++
Sbjct: 19 KKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG---ADINLQNSISDSP 75
Query: 275 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRTHPGLIQA 333
A G T +++ +L+H+ +++R+ AL AA+ G ++ V L+ I
Sbjct: 76 YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135
Query: 334 YNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVV 392
N + L A L ++ ++ +V L++ G D +I+ SG TA+ A G E+
Sbjct: 136 QNDFGYTALIEAVGLREGNQ-LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEIS 194
Query: 393 KTLLEH 398
K L ++
Sbjct: 195 KILAQY 200
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 92/186 (49%), Gaps = 17/186 (9%)
Query: 46 REIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA 105
+++ E+L + VDT+G++PL++A +++I + L+ G ++NL +++
Sbjct: 19 KKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG---ADINLQNSISDSP 75
Query: 106 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRTHPGLIQA 164
A G T +++ +L+H+ +++R+ AL AA+ G ++ V L+ I
Sbjct: 76 YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135
Query: 165 YNARAQSTLFPASPLHLASRNGHSLRR---------GPGANVQDSSGYSALHHAALNGHK 215
N + L A L R G+ L + G +++D+SG +A+ +A G+
Sbjct: 136 QNDFGYTALIEAVGL----REGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191
Query: 216 EIVELL 221
EI ++L
Sbjct: 192 EISKIL 197
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L RG +++D +G + +H AA G + ++ LL +A NI D +G+ PLHLAA G++
Sbjct: 57 LLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 288
+V L+ H S NV +TA A YG VVS
Sbjct: 117 RVVEFLVKHTAS--NVGHRNHKGDTACDLARLYGRNEVVS 154
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 38 AKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNL 97
A R+G L + ++ LL +A NI D +G+ PLHLAA G++ +V L+ H S NV
Sbjct: 77 AARAGFL--DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--NVGH 132
Query: 98 MTKDNETALHCAAQYGHTPVVS 119
+TA A YG VVS
Sbjct: 133 RNHKGDTACDLARLYGRNEVVS 154
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 62/156 (39%), Gaps = 38/156 (24%)
Query: 77 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136
GN +I R LL G N +L + +H AA+ G + LLE D I ++
Sbjct: 48 GNPEIARRLLLRGA---NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 137 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196
L LAA+ G L V+ LV+ H AS GH
Sbjct: 105 LPLHLAAKEGHLRVVEFLVK-----------------------HTASNVGH--------- 132
Query: 197 VQDSSGYSALHHAALNGHKEIVELLLTNEA--STNI 230
++ G +A A L G E+V L+ N A +TN+
Sbjct: 133 -RNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 246 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 305
GN +I R LL G N +L + +H AA+ G + LLE D I ++
Sbjct: 48 GNPEIARRLLLRGA---NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 306 TALDLAAQYGRLETVDTLVR 325
L LAA+ G L V+ LV+
Sbjct: 105 LPLHLAAKEGHLRVVEFLVK 124
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 355 GHRSVVARLLQAGLDVNIRTASGTA-LHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
G+ + RLL G + +++ +G A +H+AA G L+ ++TLLE AD+ I D++ N L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 414 DL 415
L
Sbjct: 108 HL 109
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 177 SPLHLASRNGH------SLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTN-EASTN 229
+PLH A++ G+ L G N D +G +AL+ A GHK+IVE L T N
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 230 IVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTK---DNETALHCAA 279
+ G + LH AAW G DIV++LL G N+ K D T CA+
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACAS 187
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
LH AA G+ + L N N +D GS+ L+ A G+ DIV L PN+
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ----PNIE 132
Query: 266 L--MTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 311
L K +TALH AA G+ +V LL +RN + A D A
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXA 180
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 53/130 (40%), Gaps = 25/130 (19%)
Query: 15 DQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAA 74
D L EAA+ GN+ + + L R N +D GS+ L+ A
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRV-------------------GVNGLDKAGSTALYWAC 114
Query: 75 WTGNVDIVRVLLCHGPSVPNVNL--MTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
G+ DIV L PN+ L K +TALH AA G+ +V LL +RN
Sbjct: 115 HGGHKDIVEXLFTQ----PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170
Query: 133 SRHETALDLA 142
+ A D A
Sbjct: 171 IEKKLAFDXA 180
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 32/179 (17%)
Query: 246 GNVDIVRVLLCHGPSVPN--------VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDP 297
G V + R L P P+ + +T ++T G T ++
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAEQAE 71
Query: 298 TIRNSRHETALDLAAQYGRL----ETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR 353
+I N HE AA+ G L E +D V + GL +A ++ L+ A
Sbjct: 72 SIDNPLHE-----AAKRGNLSWLRECLDNRVGVN-GLDKA----------GSTALYWACH 115
Query: 354 NGHRSVVARLL-QAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGA--DLRIIDSK 408
GH+ +V L Q +++N + G TALH AA G ++V+ LL GA DLR I+ K
Sbjct: 116 GGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK 174
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 131/330 (39%), Gaps = 50/330 (15%)
Query: 92 VPNVNLMTKDNET--ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLE 149
P +N + D+E +H AA+ G T V +L+E PTI+N TAL LA ++G ++
Sbjct: 8 FPKLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVD 67
Query: 150 TVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHS----------LRRGP------ 193
T L A S P+HLA + RG
Sbjct: 68 TAKYL---------ASVGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLL 118
Query: 194 -----------GANVQDSSGYSALHHAALNG--HKEIVELLLTNEASTNIVDTKGSSPLH 240
G++V+ G +ALH G + E +++L+ AS D +PL
Sbjct: 119 NECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLX 178
Query: 241 LAAWTGNVDIVRVLLCHGPSVPNVNL--MTKDNETALHCAAQYGHTPVVSQLLEHSCDPT 298
A N + + + PS ++ L K + LH A V + +E D
Sbjct: 179 RAXEFRNREALDLXXDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVN 238
Query: 299 IRNSRHETALDLAAQYGR-LETVDTLVRTHPGLIQAYNARAQSTLFPASPLHL----ASR 353
++ H L L+ + L T + L +T LIQA +T+ P + L A+
Sbjct: 239 XEDNEHTVPLYLSVRAAXVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAA 298
Query: 354 NGHRSVVARLLQAGLDVNIR---TASGTAL 380
+ + V +LLQ LD +R T +G A+
Sbjct: 299 DPSKQEVLQLLQEKLDEVVRSLNTGAGGAV 328
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 35/185 (18%)
Query: 261 VPNVNLMTKDNET--ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLE 318
P +N + D+E +H AA+ G T V +L+E PTI+N TAL LA ++G ++
Sbjct: 8 FPKLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVD 67
Query: 319 TVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAG----------- 367
T L A S P+HLA +V L++
Sbjct: 68 TAKYL---------ASVGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLL 118
Query: 368 -----LDVN-----IRTASG-TALHEAALCGK--LEVVKTLLEHGADLRIIDSKHNTVLD 414
+VN ++ G TALH G LE +K L++ GA D T L
Sbjct: 119 NECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLX 178
Query: 415 LLKQF 419
+F
Sbjct: 179 RAXEF 183
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 74/210 (35%), Gaps = 49/210 (23%)
Query: 66 GSSPLHLAAWTGNVDIVRVLL----------------CHGPSVPNVNLMTK--DNETALH 107
G P+HLA D+V L+ C V + K +TALH
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALH 143
Query: 108 CAAQYG--HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY 165
G + + L++ PT ++ ET L A ++ E +D T P
Sbjct: 144 WCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVP------ 197
Query: 166 NARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNE 225
++S+L R AN Q G S LH A L +++ +
Sbjct: 198 ---SKSSL-----------------RLDYANKQ---GNSHLHWAILINWEDVAXRFVEXG 234
Query: 226 ASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
N D + + PL+L+ V + + LL
Sbjct: 235 IDVNXEDNEHTVPLYLSVRAAXVLLTKELL 264
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
N D G+S LH A G +VE+L+ A N+++ +PLHLAA G+ DIV+ LL
Sbjct: 33 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 92
Query: 256 CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 311
+ ++N + + LH A +G V L+ + +I N E +D A
Sbjct: 93 QYK---ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 213 GHKEIVELLLTN-EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDN 271
G+ V L L N E N D G SPLH A G +V +L+ G + N+M + +
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI---NVMNRGD 72
Query: 272 ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
+T LH AA +GH +V +LL++ D N L A +G+ + + LV
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 49 VELLLTN-EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
V L L N E N D G SPLH A G +V +L+ G + N+M + ++T LH
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI---NVMNRGDDTPLH 77
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
AA +GH +V +LL++ D N L A +G+ + + LV
Sbjct: 78 LAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 64/155 (41%), Gaps = 26/155 (16%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
SPLH A R G S + RG NV + + LH AA +GH++IV+ LL +A N
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
V+ G+ PLH A + G + L+ +G V N +YG PV
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN--------------KYGEMPV---- 142
Query: 291 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
+R E A + R+ DT +
Sbjct: 143 --DKAKAPLRELLRERAEKMGQNLNRIPYKDTFWK 175
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASGTA-LHEAALCGKLEVVKTLLEHGADLRI 404
+PLHLA+ +GHR +V +LLQ D+N G LH A G+ +V + L+ +GA + I
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Query: 405 IDSKHNTVLDLLK 417
+ +D K
Sbjct: 134 CNKYGEMPVDKAK 146
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
+VE+L+ A N+++ +PLHLAA G+ DIV+ LL + ++N + + LH
Sbjct: 54 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK---ADINAVNEHGNVPLH 110
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 142
A +G V L+ + +I N E +D A
Sbjct: 111 YACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRT-ASGTALHEAALCGKLEVVKTLLEHGADLRI 404
SPLH A R G +VV L+ G +N+ T LH AA G ++V+ LL++ AD+
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 405 IDSKHNTVL 413
++ N L
Sbjct: 101 VNEHGNVPL 109
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 20/111 (18%)
Query: 46 REIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA 105
R+IV+ LL +A N V+ G+ PLH A + G + L+ +G V N
Sbjct: 85 RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN--------- 135
Query: 106 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
+YG PV +R E A + R+ DT +
Sbjct: 136 -----KYGEMPV------DKAKAPLRELLRERAEKMGQNLNRIPYKDTFWK 175
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 34/139 (24%)
Query: 104 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 163
+ LH A + G + VV L+ + N +T L LAA +G + V L++ +
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-- 98
Query: 164 AYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLT 223
N + G LH+A G ++ E L+
Sbjct: 99 --------------------------------NAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 224 NEASTNIVDTKGSSPLHLA 242
N A +I + G P+ A
Sbjct: 127 NGALVSICNKYGEMPVDKA 145
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 213 GHKEIVELLLTN-EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDN 271
G+ V L L N E N D G SPLH A G +V +L+ G + N+M + +
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI---NVMNRGD 67
Query: 272 ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
+T LH AA +GH +V +LL++ D N L A +G+ + + LV
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
N D G+S LH A G +VE+L+ A N+++ +PLHLAA G+ DIV+ LL
Sbjct: 28 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 87
Query: 256 CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 311
+ ++N + + LH A +G V L+ + +I N E +D A
Sbjct: 88 QYK---ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 49 VELLLTN-EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
V L L N E N D G SPLH A G +V +L+ G + N+M + ++T LH
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI---NVMNRGDDTPLH 72
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
AA +GH +V +LL++ D N L A +G+ + + LV
Sbjct: 73 LAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 64/155 (41%), Gaps = 26/155 (16%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
SPLH A R G S + RG NV + + LH AA +GH++IV+ LL +A N
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
V+ G+ PLH A + G + L+ +G V N +YG PV
Sbjct: 96 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN--------------KYGEMPV---- 137
Query: 291 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
+R E A + R+ DT +
Sbjct: 138 --DKAKAPLRELLRERAEKMGQNLNRIPYKDTFWK 170
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASGTA-LHEAALCGKLEVVKTLLEHGADLRI 404
+PLHLA+ +GHR +V +LLQ D+N G LH A G+ +V + L+ +GA + I
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Query: 405 IDSKHNTVLDLLK 417
+ +D K
Sbjct: 129 CNKYGEMPVDKAK 141
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
+VE+L+ A N+++ +PLHLAA G+ DIV+ LL + ++N + + LH
Sbjct: 49 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK---ADINAVNEHGNVPLH 105
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 142
A +G V L+ + +I N E +D A
Sbjct: 106 YACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRT-ASGTALHEAALCGKLEVVKTLLEHGADLRI 404
SPLH A R G +VV L+ G +N+ T LH AA G ++V+ LL++ AD+
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 405 IDSKHNTVL 413
++ N L
Sbjct: 96 VNEHGNVPL 104
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 20/111 (18%)
Query: 46 REIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA 105
R+IV+ LL +A N V+ G+ PLH A + G + L+ +G V N
Sbjct: 80 RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN--------- 130
Query: 106 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
+YG PV +R E A + R+ DT +
Sbjct: 131 -----KYGEMPV------DKAKAPLRELLRERAEKMGQNLNRIPYKDTFWK 170
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 34/139 (24%)
Query: 104 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 163
+ LH A + G + VV L+ + N +T L LAA +G + V L++ +
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-- 93
Query: 164 AYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLT 223
N + G LH+A G ++ E L+
Sbjct: 94 --------------------------------NAVNEHGNVPLHYACFWGQDQVAEDLVA 121
Query: 224 NEASTNIVDTKGSSPLHLA 242
N A +I + G P+ A
Sbjct: 122 NGALVSICNKYGEMPVDKA 140
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 38/197 (19%)
Query: 45 AREIVELLLTNEASTNI---VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKD 101
A EI LL+ + N+ D G +P H+A GN+++V+ L P P++N +T
Sbjct: 48 AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY-DRPLKPDLNKITNQ 106
Query: 102 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 161
T LH A V L+E+ I++ ++ L AA G L+ ++ L GL
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC----GL 162
Query: 162 IQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
++ N QD G++ L HA GH + LL
Sbjct: 163 GKS-----------------------------AVNWQDKQGWTPLFHALAEGHGDAAVLL 193
Query: 222 LTNE-ASTNIVDTKGSS 237
+ A ++VD KG+
Sbjct: 194 VEKYGAEYDLVDNKGAK 210
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Query: 198 QDSSGYSALHHAALNGHKEIVELLLTNEASTNI---VDTKGSSPLHLAAWTGNVDIVRVL 254
+D G LH + EI LL+ + N+ D G +P H+A GN+++V+ L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 255 LCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY 314
P P++N +T T LH A V L+E+ I++ ++ L AA
Sbjct: 92 Y-DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 315 GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT 374
G L+ ++ L + + + + LF A LA +G +V+ + + G + ++
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHA----LAEGHGDAAVLL-VEKYGAEYDLVD 205
Query: 375 ASGTALHEAAL 385
G + AL
Sbjct: 206 NKGAKAEDVAL 216
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
P N + G + LH A E+ + L+ N AS I D PLH AA G++ ++
Sbjct: 98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 253 VLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 292
+L G S VN K T L A GH L+E
Sbjct: 158 LLCGLGKSA--VNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 346 SPLHLASRNGHRSVVARLLQAGL--DVNIRTASG-TALHEAALCGKLEVVKTLLEHGADL 402
+P H+A G+ VV L L D+N T G T LH A EV + L+E+GA +
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Query: 403 RIIDSKHNTV 412
RI D K N +
Sbjct: 134 RIKD-KFNQI 142
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 13/195 (6%)
Query: 69 PLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNE--TALHCAAQYGHTPVVSQLLEHSC 126
PLH A V+ LL PS+ L+ KD + LH + + + S LL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSL----LLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 127 DPTIRNSRHE---TALDLAAQYGRLETVDTLVR--THPGLIQAYNARAQSTLFPASPLHL 181
+ + + + T +A G LE V +L P L + N + + L A
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKW 119
Query: 182 ASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL-TNEASTNIVDTKGSSPLH 240
+ + G ++D LH AA G +++ELL +++ N D +G +PL
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 241 LAAWTGNVDIVRVLL 255
A G+ D +L+
Sbjct: 180 HALAEGHGDAAVLLV 194
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 38/197 (19%)
Query: 45 AREIVELLLTNEASTNI---VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKD 101
A EI LL+ + N+ D G +P H+A GN+++V+ L P P++N +T
Sbjct: 48 AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY-DRPLKPDLNKITNQ 106
Query: 102 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 161
T LH A V L+E+ I++ ++ L AA G L+ ++ L GL
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC----GL 162
Query: 162 IQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
G S N QD G++ L HA GH + LL
Sbjct: 163 ------------------------GKS-----AVNWQDKQGWTPLFHALAEGHGDAAVLL 193
Query: 222 LTNE-ASTNIVDTKGSS 237
+ A ++VD KG+
Sbjct: 194 VEKYGAEYDLVDNKGAK 210
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Query: 198 QDSSGYSALHHAALNGHKEIVELLLTNEASTNI---VDTKGSSPLHLAAWTGNVDIVRVL 254
+D G LH + EI LL+ + N+ D G +P H+A GN+++V+ L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 255 LCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY 314
P P++N +T T LH A V L+E+ I++ ++ L AA
Sbjct: 92 Y-DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 315 GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT 374
G L+ ++ L + + + + LF A LA +G +V+ + + G + ++
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHA----LAEGHGDAAVLL-VEKYGAEYDLVD 205
Query: 375 ASGTALHEAAL 385
G + AL
Sbjct: 206 NKGAKAEDVAL 216
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
P N + G + LH A E+ + L+ N AS I D PLH AA G++ ++
Sbjct: 98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 253 VLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLA 311
+L G S VN K T L A GH L+E + + + +++ A D+A
Sbjct: 158 LLCGLGKSA--VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 346 SPLHLASRNGHRSVVARLLQAGL--DVNIRTASG-TALHEAALCGKLEVVKTLLEHGADL 402
+P H+A G+ VV L L D+N T G T LH A EV + L+E+GA +
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Query: 403 RIIDSKHNTV 412
RI D K N +
Sbjct: 134 RIKD-KFNQI 142
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 13/195 (6%)
Query: 69 PLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNE--TALHCAAQYGHTPVVSQLLEHSC 126
PLH A V+ LL PS+ L+ KD + LH + + + S LL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSL----LLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 127 DPTIRNSRHE---TALDLAAQYGRLETVDTLVR--THPGLIQAYNARAQSTLFPASPLHL 181
+ + + + T +A G LE V +L P L + N + + L A
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKW 119
Query: 182 ASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL-TNEASTNIVDTKGSSPLH 240
+ + G ++D LH AA G +++ELL +++ N D +G +PL
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 241 LAAWTGNVDIVRVLL 255
A G+ D +L+
Sbjct: 180 HALAEGHGDAAVLLV 194
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 38/197 (19%)
Query: 45 AREIVELLLTNEASTNI---VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKD 101
A EI LL+ + N+ D G +P H+A GN+++V+ L P P++N +T
Sbjct: 48 AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY-DRPLKPDLNKITNQ 106
Query: 102 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 161
T LH A V L+E+ I++ ++ L AA G L+ ++ L GL
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC----GL 162
Query: 162 IQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
G S N QD G++ L HA GH + LL
Sbjct: 163 ------------------------GKS-----AVNWQDKQGWTPLFHALAEGHGDAAVLL 193
Query: 222 LTNE-ASTNIVDTKGSS 237
+ A ++VD KG+
Sbjct: 194 VEKYGAEYDLVDNKGAK 210
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Query: 198 QDSSGYSALHHAALNGHKEIVELLLTNEASTNI---VDTKGSSPLHLAAWTGNVDIVRVL 254
+D G LH + EI LL+ + N+ D G +P H+A GN+++V+ L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 255 LCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY 314
P P++N +T T LH A V L+E+ I++ ++ L AA
Sbjct: 92 Y-DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 315 GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT 374
G L+ ++ L + + + + LF A LA +G +V+ + + G + ++
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHA----LAEGHGDAAVLL-VEKYGAEYDLVD 205
Query: 375 ASGTALHEAAL 385
G + AL
Sbjct: 206 NKGAKAEDVAL 216
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
P N + G + LH A E+ + L+ N AS I D PLH AA G++ ++
Sbjct: 98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 253 VLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLA 311
+L G S VN K T L A GH L+E + + + +++ A D+A
Sbjct: 158 LLCGLGKSA--VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 346 SPLHLASRNGHRSVVARLLQAGL--DVNIRTASG-TALHEAALCGKLEVVKTLLEHGADL 402
+P H+A G+ VV L L D+N T G T LH A EV + L+E+GA +
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Query: 403 RIIDSKHNTV 412
RI D K N +
Sbjct: 134 RIKD-KFNQI 142
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 13/195 (6%)
Query: 69 PLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNE--TALHCAAQYGHTPVVSQLLEHSC 126
PLH A V+ LL PS+ L+ KD + LH + + + S LL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSL----LLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 127 DPTIRNSRHE---TALDLAAQYGRLETVDTLVR--THPGLIQAYNARAQSTLFPASPLHL 181
+ + + + T +A G LE V +L P L + N + + L A
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKW 119
Query: 182 ASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL-TNEASTNIVDTKGSSPLH 240
+ + G ++D LH AA G +++ELL +++ N D +G +PL
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 241 LAAWTGNVDIVRVLL 255
A G+ D +L+
Sbjct: 180 HALAEGHGDAAVLLV 194
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 15/211 (7%)
Query: 60 NIVDTKGSSPLHLAAW------TGNVD-------IVRVLLCHGPSVPNVNLMTKDNETAL 106
N+ G +PL +A+ TGN + ++ + G S+ N T ETAL
Sbjct: 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRT--GETAL 61
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
H AA+Y + +LLE S D I+++ T L A L+R + A
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
+ L A+ L + + N D G SALH AA + + +LL N A
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Query: 227 STNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257
+ ++ + + +PL LAA G+ + +VLL H
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 14/157 (8%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+ LHLA+R S L AN+QD+ G + LH A + + ++L+ N A+
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD-- 116
Query: 231 VDTK---GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVV 287
+D + G++PL LAA ++ L+ S +VN + ++ALH AA +
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 288 SQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
LL++ + ++N+R ET L LAA+ G ET L+
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 22/201 (10%)
Query: 229 NIVDTKGSSPLHLAAW------TGNVD-------IVRVLLCHGPSVPNVNLMTKDNETAL 275
N+ G +PL +A+ TGN + ++ + G S+ N T ETAL
Sbjct: 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRT--GETAL 61
Query: 276 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 335
H AA+Y + +LLE S D I+++ T L A L+R +
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA---TDLD 118
Query: 336 ARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVN-IRTASGTALHEAALCGKLEVVKT 394
AR +PL LA+R ++ L+ + DVN + +ALH AA ++
Sbjct: 119 ARMHDG---TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175
Query: 395 LLEHGADLRIIDSKHNTVLDL 415
LL++GA+ + +++ T L L
Sbjct: 176 LLKNGANKDMQNNREETPLFL 196
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 60/153 (39%), Gaps = 36/153 (23%)
Query: 34 LSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL------- 86
L+ R RS R LL A NI D G +PLH A + ++L+
Sbjct: 63 LAARYSRSDAAKR-----LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117
Query: 87 ---CHGPSVP---------------------NVNLMTKDNETALHCAAQYGHTPVVSQLL 122
H + P +VN + ++ALH AA + LL
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
++ + ++N+R ET L LAA+ G ET L+
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
++E L+ + A N VD G S LH AA NVD VLL +G N ++ ET L
Sbjct: 139 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG---ANKDMQNNREETPLF 195
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 144
AA+ G LL+H + I + D+A +
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 2/177 (1%)
Query: 81 IVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALD 140
++ + G S+ N T ETALH AA+Y + +LLE S D I+++ T L
Sbjct: 3 VISDFIYQGASLHNQTDRT--GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLH 60
Query: 141 LAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDS 200
A L+R + A + L A+ L L + N D
Sbjct: 61 AAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDD 120
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257
G SALH AA + + +LL N A+ ++ + K +PL LAA G+ + +VLL H
Sbjct: 121 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDH 177
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 14/157 (8%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+ LHLA+R S L A +QD+ G + LH A + + ++LL N A+
Sbjct: 24 TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD-- 81
Query: 231 VDTK---GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVV 287
+D + G++PL LAA ++ L+ S +VN + ++ALH AA +
Sbjct: 82 LDARMHDGTTPLILAARLALEGMLEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAA 138
Query: 288 SQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
LL++ + ++N++ ET L LAA+ G ET L+
Sbjct: 139 VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 175
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 250 IVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALD 309
++ + G S+ N T ETALH AA+Y + +LLE S D I+++ T L
Sbjct: 3 VISDFIYQGASLHNQTDRT--GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLH 60
Query: 310 LAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLD 369
A L+R + +AR +PL LA+R ++ L+ + D
Sbjct: 61 AAVSADAQGVFQILLRNRATDL---DARMHD---GTTPLILAARLALEGMLEDLINSHAD 114
Query: 370 VN-IRTASGTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
VN + +ALH AA ++ LL++GA+ + ++K T L
Sbjct: 115 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPL 159
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 5/196 (2%)
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
N D G + LHLAA D + LL + + + T LH A V
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLL---EASADAXIQDNMGRTPLHAAVSADAQGVFQ 72
Query: 120 QLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASP 178
LL + + D R T L LAA+ ++ L+ +H + A + +S L A+
Sbjct: 73 ILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHAD-VNAVDDLGKSALHWAAA 131
Query: 179 LHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSP 238
++ L+ G ++Q++ + L AA G E ++LL + A+ +I D P
Sbjct: 132 VNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 191
Query: 239 LHLAAWTGNVDIVRVL 254
+A + DIVR+L
Sbjct: 192 RDIAQERMHHDIVRLL 207
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 45 AREIVELLLTNEASTNIVDTK---GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKD 101
A+ + ++LL N A+ +D + G++PL LAA ++ L+ S +VN +
Sbjct: 67 AQGVFQILLRNRATD--LDARMHDGTTPLILAARLALEGMLEDLIN---SHADVNAVDDL 121
Query: 102 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
++ALH AA + LL++ + ++N++ ET L LAA+ G ET L+
Sbjct: 122 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 175
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
++E L+ + A N VD G S LH AA NVD VLL +G N ++ ET L
Sbjct: 104 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA---NKDMQNNKEETPLF 160
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 144
AA+ G LL+H + I + D+A +
Sbjct: 161 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 197
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 15/211 (7%)
Query: 60 NIVDTKGSSPLHLAAW------TGNVD-------IVRVLLCHGPSVPNVNLMTKDNETAL 106
N+ G +PL +A+ TGN + ++ + G S+ N T ETAL
Sbjct: 5 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRT--GETAL 62
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
H AA+Y + +LLE S D I+++ T L A L+R + A
Sbjct: 63 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 122
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
+ L A+ L + + N D G SALH AA + + +LL N A
Sbjct: 123 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 182
Query: 227 STNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257
+ ++ + + +PL LAA G+ + +VLL H
Sbjct: 183 NKDMQNNREETPLFLAAREGSYETAKVLLDH 213
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 14/157 (8%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+ LHLA+R S L AN+QD+ G + LH A + + ++L+ N A+
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD-- 117
Query: 231 VDTK---GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVV 287
+D + G++PL LAA ++ L+ S +VN + ++ALH AA +
Sbjct: 118 LDARMHDGTTPLILAARLAVEGMLEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAA 174
Query: 288 SQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
LL++ + ++N+R ET L LAA+ G ET L+
Sbjct: 175 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 211
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 22/201 (10%)
Query: 229 NIVDTKGSSPLHLAAW------TGNVD-------IVRVLLCHGPSVPNVNLMTKDNETAL 275
N+ G +PL +A+ TGN + ++ + G S+ N T ETAL
Sbjct: 5 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRT--GETAL 62
Query: 276 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 335
H AA+Y + +LLE S D I+++ T L A L+R + +
Sbjct: 63 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL---D 119
Query: 336 ARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVN-IRTASGTALHEAALCGKLEVVKT 394
AR +PL LA+R ++ L+ + DVN + +ALH AA ++
Sbjct: 120 ARMHDG---TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 176
Query: 395 LLEHGADLRIIDSKHNTVLDL 415
LL++GA+ + +++ T L L
Sbjct: 177 LLKNGANKDMQNNREETPLFL 197
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 60/153 (39%), Gaps = 36/153 (23%)
Query: 34 LSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL------- 86
L+ R RS R LL A NI D G +PLH A + ++L+
Sbjct: 64 LAARYSRSDAAKR-----LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 87 ---CHGPSVP---------------------NVNLMTKDNETALHCAAQYGHTPVVSQLL 122
H + P +VN + ++ALH AA + LL
Sbjct: 119 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 178
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
++ + ++N+R ET L LAA+ G ET L+
Sbjct: 179 KNGANKDMQNNREETPLFLAAREGSYETAKVLL 211
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
++E L+ + A N VD G S LH AA NVD VLL +G N ++ ET L
Sbjct: 140 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG---ANKDMQNNREETPLF 196
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 144
AA+ G LL+H + I + D+A +
Sbjct: 197 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 233
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 264 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
+N +T LH A + LL CDP +R+ R T L LA + G L +V L
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 324 VR--THPGL---IQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG- 377
+ T P L ++A N + LHLAS +G+ +V L+ G DVN +
Sbjct: 95 TQSCTTPHLHSILKATNYNGHTC------LHLASIHGYLGIVELLVSLGADVNAQEPCNG 148
Query: 378 -TALHEAALCGKLEVVKTLLEHGADL 402
TALH A ++V LL+ GAD+
Sbjct: 149 RTALHLAVDLQNPDLVSLLLKCGADV 174
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 74/171 (43%), Gaps = 29/171 (16%)
Query: 95 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
+N +T LH A + LL CDP +R+ R T L LA + G L +V L
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 155 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGH 214
QS P HL HS+ + N G++ LH A+++G+
Sbjct: 95 T--------------QSCTTP----HL-----HSILKATNYN-----GHTCLHLASIHGY 126
Query: 215 KEIVELLLTNEASTNIVD-TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNV 264
IVELL++ A N + G + LHLA N D+V +LL G V V
Sbjct: 127 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 177
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
N Q++ + LH A + EI E LL + D +G++PLHLA G + V VL
Sbjct: 36 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 95
Query: 256 --CHGPSVPNVNLMTKDN-ETALHCAAQYGHTPVVSQLLEHSCDPTIR---NSRHETALD 309
C P + ++ T N T LH A+ +G+ +V L+ D + N R TAL
Sbjct: 96 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR--TALH 153
Query: 310 LAAQYGRLETVDTLVR 325
LA + V L++
Sbjct: 154 LAVDLQNPDLVSLLLK 169
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL--CHGPSVPNVNLMTKDN-E 103
EI E LL + D +G++PLHLA G + V VL C P + ++ T N
Sbjct: 56 EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 115
Query: 104 TALHCAAQYGHTPVVSQLLEHSCDPTIR---NSRHETALDLAAQYGRLETVDTLVR 156
T LH A+ +G+ +V L+ D + N R TAL LA + V L++
Sbjct: 116 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR--TALHLAVDLQNPDLVSLLLK 169
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 2/177 (1%)
Query: 81 IVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALD 140
++ + G S+ N T ETALH AA+Y + +LLE S D I+++ T L
Sbjct: 6 VISDFIYQGASLHNQTDRT--GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLH 63
Query: 141 LAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDS 200
A L+R + A + L A+ L + + N D
Sbjct: 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 123
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257
G SALH AA + + +LL N A+ ++ + + +PL LAA G+ + +VLL H
Sbjct: 124 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 14/157 (8%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+ LHLA+R S L AN+QD+ G + LH A + + ++L+ N A+
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD-- 84
Query: 231 VDTK---GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVV 287
+D + G++PL LAA ++ L+ S +VN + ++ALH AA +
Sbjct: 85 LDARMHDGTTPLILAARLAVEGMLEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAA 141
Query: 288 SQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
LL++ + ++N+R ET L LAA+ G ET L+
Sbjct: 142 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 178
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 5/208 (2%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
I + + + N D G + LHLAA D + LL + + N+ T LH
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL---EASADANIQDNMGRTPLH 63
Query: 108 CAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
A V L+ + + D R T L LAA+ ++ L+ +H + A +
Sbjct: 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVD 122
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
+S L A+ ++ L+ G ++Q++ + L AA G E ++LL + A
Sbjct: 123 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182
Query: 227 STNIVDTKGSSPLHLAAWTGNVDIVRVL 254
+ +I D P +A + DIVR+L
Sbjct: 183 NRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 250 IVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALD 309
++ + G S+ N T ETALH AA+Y + +LLE S D I+++ T L
Sbjct: 6 VISDFIYQGASLHNQTDRT--GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLH 63
Query: 310 LAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLD 369
A L+R + +AR +PL LA+R ++ L+ + D
Sbjct: 64 AAVSADAQGVFQILIRNRATDL---DARMHDG---TTPLILAARLAVEGMLEDLINSHAD 117
Query: 370 VN-IRTASGTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
VN + +ALH AA ++ LL++GA+ + +++ T L L
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 164
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 9/141 (6%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTK---GSSPLHLAA 74
LLEA+ + NIQ A S A+ + ++L+ N A+ +D + G++PL LAA
Sbjct: 44 LLEASADANIQDNMGRTPLHAAVSAD-AQGVFQILIRNRATD--LDARMHDGTTPLILAA 100
Query: 75 WTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR 134
++ L+ S +VN + ++ALH AA + LL++ + ++N+R
Sbjct: 101 RLAVEGMLEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 157
Query: 135 HETALDLAAQYGRLETVDTLV 155
ET L LAA+ G ET L+
Sbjct: 158 EETPLFLAAREGSYETAKVLL 178
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 264 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
+N +T LH A + LL CDP +R+ R T L LA + G L +V L
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 324 VR--THP---GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG- 377
+ T P +++A N + LHLAS +G+ +V L+ G DVN +
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTC------LHLASIHGYLGIVELLVSLGADVNAQEPCNG 151
Query: 378 -TALHEAALCGKLEVVKTLLEHGADL 402
TALH A ++V LL+ GAD+
Sbjct: 152 RTALHLAVDLQNPDLVSLLLKCGADV 177
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 74/171 (43%), Gaps = 29/171 (16%)
Query: 95 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
+N +T LH A + LL CDP +R+ R T L LA + G L +V L
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 155 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGH 214
QS P HL HS+ + N G++ LH A+++G+
Sbjct: 98 T--------------QSCTTP----HL-----HSILKATNYN-----GHTCLHLASIHGY 129
Query: 215 KEIVELLLTNEASTNIVD-TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNV 264
IVELL++ A N + G + LHLA N D+V +LL G V V
Sbjct: 130 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 180
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
N Q++ + LH A + EI E LL + D +G++PLHLA G + V VL
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 98
Query: 256 --CHGPSVPNVNLMTKDN-ETALHCAAQYGHTPVVSQLLEHSCDPTIR---NSRHETALD 309
C P + ++ T N T LH A+ +G+ +V L+ D + N R TAL
Sbjct: 99 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR--TALH 156
Query: 310 LAAQYGRLETVDTLVR 325
LA + V L++
Sbjct: 157 LAVDLQNPDLVSLLLK 172
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL--CHGPSVPNVNLMTKDN-E 103
EI E LL + D +G++PLHLA G + V VL C P + ++ T N
Sbjct: 59 EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 118
Query: 104 TALHCAAQYGHTPVVSQLLEHSCDPTIR---NSRHETALDLAAQYGRLETVDTLVR 156
T LH A+ +G+ +V L+ D + N R TAL LA + V L++
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR--TALHLAVDLQNPDLVSLLLK 172
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 12/178 (6%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAST-NIVDTKGSSPLHLAAWTGN 247
L G AN QD++G + LH A + ++LL N A+ N G++PL LAA
Sbjct: 71 LDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAI 130
Query: 248 VDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETA 307
+V L+ + ++N +TALH AA +T V+ LL H + ++ + ET
Sbjct: 131 EGMVEDLIT---ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETP 187
Query: 308 LDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
L LAA+ G E L+ + R + P +AS H +V RLL
Sbjct: 188 LFLAAREGSYE-------ASKALLDNFANREITDHMDRLPRDVASERLHHDIV-RLLD 237
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 2/175 (1%)
Query: 81 IVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALD 140
++ LL G + M K ET+LH AA++ +LL+ D +++ T L
Sbjct: 32 VISDLLAQGAELNAT--MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 89
Query: 141 LAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDS 200
A + L+R + A + L A+ L + + N D+
Sbjct: 90 AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN 149
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
SG +ALH AA + E V +LL + A+ + D K +PL LAA G+ + + LL
Sbjct: 150 SGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL 204
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 69/165 (41%), Gaps = 9/165 (5%)
Query: 250 IVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALD 309
++ LL G + M K ET+LH AA++ +LL+ D +++ T L
Sbjct: 32 VISDLLAQGAELNAT--MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 89
Query: 310 LAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLD 369
A + L+R NAR +PL LA+R +V L+ A D
Sbjct: 90 AAVAADAMGVFQILLRNRA---TNLNARMHD---GTTPLILAARLAIEGMVEDLITADAD 143
Query: 370 VNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
+N SG TALH AA E V LL H A+ D K T L
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 188
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 79/206 (38%), Gaps = 36/206 (17%)
Query: 52 LLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ 111
LL A N D G +PLH A + + ++LL + N+N D T L AA+
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN--RATNLNARMHDGTTPLILAAR 127
Query: 112 YGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQS 171
+V L+ D ++ +TAL AA E V+ L+
Sbjct: 128 LAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL---------------- 171
Query: 172 TLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
+H A+R + QD + L AA G E + LL N A+ I
Sbjct: 172 -------MHHANR-----------DAQDDKDETPLFLAAREGSYEASKALLDNFANREIT 213
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCH 257
D P +A+ + DIVR+L H
Sbjct: 214 DHMDRLPRDVASERLHHDIVRLLDEH 239
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 48 IVELLLTNEAST-NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
+ ++LL N A+ N G++PL LAA +V L+ + ++N +TAL
Sbjct: 99 VFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT---ADADINAADNSGKTAL 155
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
H AA +T V+ LL H + ++ + ET L LAA+ G E L+
Sbjct: 156 HWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL 204
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 15/211 (7%)
Query: 60 NIVDTKGSSPLHLAAW------TGNVD-------IVRVLLCHGPSVPNVNLMTKDNETAL 106
N+ G +PL +A+ TGN + ++ + G S+ N T TAL
Sbjct: 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRT--GATAL 61
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
H AA Y + +LLE S D I+++ T L A L+R + A
Sbjct: 62 HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
+ L A+ L + + N D G SALH AA + + +LL N A
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Query: 227 STNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257
+ ++ + + +PL LAA G+ + +VLL H
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 14/164 (8%)
Query: 170 QSTLFPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLT 223
Q+ A+ LHLA+ S L AN+QD+ G + LH A + + ++L+
Sbjct: 52 QTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 224 NEASTNIVDTK---GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ 280
N A+ +D + G++PL LAA ++ L+ S +VN + ++ALH AA
Sbjct: 112 NRATD--LDARMHDGTTPLILAARLAVEGMLEDLIN---SHADVNAVDDLGKSALHWAAA 166
Query: 281 YGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
+ LL++ + ++N+R ET L LAA+ G ET L+
Sbjct: 167 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 22/201 (10%)
Query: 229 NIVDTKGSSPLHLAAW------TGNVD-------IVRVLLCHGPSVPNVNLMTKDNETAL 275
N+ G +PL +A+ TGN + ++ + G S+ N T TAL
Sbjct: 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRT--GATAL 61
Query: 276 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 335
H AA Y + +LLE S D I+++ T L A L+R +
Sbjct: 62 HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA---TDLD 118
Query: 336 ARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVN-IRTASGTALHEAALCGKLEVVKT 394
AR +PL LA+R ++ L+ + DVN + +ALH AA ++
Sbjct: 119 ARMHDG---TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175
Query: 395 LLEHGADLRIIDSKHNTVLDL 415
LL++GA+ + +++ T L L
Sbjct: 176 LLKNGANKDMQNNREETPLFL 196
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 31/135 (22%)
Query: 52 LLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL----------CHGPSVP-------- 93
LL A NI D G +PLH A + ++L+ H + P
Sbjct: 76 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135
Query: 94 -------------NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALD 140
+VN + ++ALH AA + LL++ + ++N+R ET L
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 141 LAAQYGRLETVDTLV 155
LAA+ G ET L+
Sbjct: 196 LAAREGSYETAKVLL 210
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
++E L+ + A N VD G S LH AA NVD VLL +G N ++ ET L
Sbjct: 139 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG---ANKDMQNNREETPLF 195
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 144
AA+ G LL+H + I + D+A +
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 95 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
VN+ + TALH + + + PVV QLL+ + +R + + L+T D
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD- 162
Query: 155 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHH 208
+ T L + N A+++ + L LA +G L NVQD G +AL
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMC 222
Query: 209 AALNGHKEIVELLL-TNEASTNIVDTKGSSPLHLAAWTGNVDIVRVL 254
A +GHKEI LLL ++ D GS+ L +A G +I +L
Sbjct: 223 ACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 66 GSSPLHLAAWTGNVDIVRVLL-CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE- 123
G + L LA G VD+V+ LL C +VN+ D TAL CA ++GH + LL
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEA----DVNVQDDDGSTALMCACEHGHKEIAGLLLAV 238
Query: 124 HSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
SCD ++ + TAL +A G+ E L
Sbjct: 239 PSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 3/152 (1%)
Query: 264 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
VN+ + TALH + + + PVV QLL+ + +R + + L+T D
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD- 162
Query: 324 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHE 382
+ T L + N A+++ + L LA +G VV LL DVN++ G TAL
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMC 222
Query: 383 AALCGKLEVVKTLLE-HGADLRIIDSKHNTVL 413
A G E+ LL D+ + D +T L
Sbjct: 223 ACEHGHKEIAGLLLAVPSCDISLTDRDGSTAL 254
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTK---GSSPLHLAAWT-----GN 247
N+ DS+G +ALH++ + + +V+ LL ++ VD + G SP+ L A +
Sbjct: 105 NIADSNGNTALHYSVSHANFPVVQQLL--DSGVCKVDKQNRAGYSPIMLTALATLKTQDD 162
Query: 248 VDIVRVLLCHGPSVPNVNL-MTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET 306
++ V L G N+N ++ +TAL A +G VV LL D +++ T
Sbjct: 163 IETVLQLFRLG----NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGST 218
Query: 307 ALDLAAQYGRLETVDTLV 324
AL A ++G E L+
Sbjct: 219 ALMCACEHGHKEIAGLLL 236
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
+ G +ALH+A GH EIV+ L+ + N D+ G +PLH AA NV + + L+ G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 259 PSV 261
+V
Sbjct: 127 AAV 129
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 333 AYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEV 391
A+ R + P + L +S G +V R++ D ++ G TALH A G E+
Sbjct: 26 AHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEI 85
Query: 392 VKTLLEHGADLRIIDSKHNTVLDLLKQFPPHAVHDISTIINPVMSYEFLVSGGGTRSVSD 451
VK L++ G ++ DS T P H + N V +FLV G
Sbjct: 86 VKFLVQFGVNVNAADSDGWT--------PLHC----AASCNNVQVCKFLVESGAAVFAMT 133
Query: 452 TDDMQ 456
DMQ
Sbjct: 134 YSDMQ 138
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAR--------------EIVELLLTNEASTNIVD 63
LL+++ G +V++I+ + S P EIV+ L+ + N D
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSV 92
+ G +PLH AA NV + + L+ G +V
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 77 GNVDIVRVLLCH--GPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR 134
G D+V+ ++ PS+PN + TALH A GHT +V L++ + +S
Sbjct: 48 GEFDLVQRIIYEVDDPSLPN-----DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 135 HETALDLAAQYGRLETVDTLVRT 157
T L AA ++ LV +
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVES 125
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 246 GNVDIVRVLLCH--GPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR 303
G D+V+ ++ PS+PN + TALH A GHT +V L++ + +S
Sbjct: 48 GEFDLVQRIIYEVDDPSLPN-----DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 304 HETALDLAAQYGRLETVDTLVRT 326
T L AA ++ LV +
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVES 125
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
+ G +ALH+A GH EIV+ L+ + N D+ G +PLH AA NV + + L+ G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 259 PSV 261
+V
Sbjct: 127 AAV 129
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAR--------------EIVELLLTNEASTNIVD 63
LL+++ G +V++I+ + S P EIV+ L+ + N D
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSV 92
+ G +PLH AA NV + + L+ G +V
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 13/114 (11%)
Query: 344 PASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADL 402
P + L +S G +V R++ D ++ G TALH A G E+VK L++ G ++
Sbjct: 37 PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Query: 403 RIIDSKHNTVLDLLKQFPPHAVHDISTIINPVMSYEFLVSGGGTRSVSDTDDMQ 456
DS T P H + N V +FLV G DMQ
Sbjct: 97 NAADSDGWT--------PLHC----AASCNNVQVCKFLVESGAAVFAMTYSDMQ 138
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 77 GNVDIVRVLLCH--GPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR 134
G D+V+ ++ PS+PN + TALH A GHT +V L++ + +S
Sbjct: 48 GEFDLVQRIIYEVDDPSLPN-----DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 135 HETALDLAAQYGRLETVDTLVRT 157
T L AA ++ LV +
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVES 125
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 246 GNVDIVRVLLCH--GPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR 303
G D+V+ ++ PS+PN + TALH A GHT +V L++ + +S
Sbjct: 48 GEFDLVQRIIYEVDDPSLPN-----DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 304 HETALDLAAQYGRLETVDTLVRT 326
T L AA ++ LV +
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVES 125
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ G N +D GY+ LH AA GH EIVE+LL A N D G + ++ GN
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNE 81
Query: 249 DIVRVL 254
D+ +L
Sbjct: 82 DLAEIL 87
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A N D G +PLHLAA G+++IV VLL G +VN
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVN 62
Query: 266 LMTKDNETALHCAAQYGH 283
K +TA + G+
Sbjct: 63 AQDKFGKTAFDISIDNGN 80
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G D VR+L+ +G +VN KD T LH AA+ GH +V LL+ D ++
Sbjct: 9 AARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 133 SRHETALDLAAQYGRLETVDTL 154
+TA D++ G + + L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G +VN KD T LH AA+ GH +V LL+ D ++
Sbjct: 9 AARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 302 SRHETALDLAAQYGRLETVDTL 323
+TA D++ G + + L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKH 409
A+R G V L+ G DVN + G T LH AA G LE+V+ LL+ GAD+ D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 410 NTVLDL 415
T D+
Sbjct: 69 KTAFDI 74
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
V +L+ N A N D G +PLHLAA G+++IV VLL G +VN K +TA
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAQDKFGKTAFDI 74
Query: 109 AAQYGH 114
+ G+
Sbjct: 75 SIDNGN 80
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASGTALHEAALCGKLEVVKTLLEHGA 400
+PLHLA+R GH +V LL+AG DVN + G + ++ E + +L+ A
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQKAA 91
Score = 35.8 bits (81), Expect = 0.048, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 177 SPLHLASRNGH------SLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
+PLHLA+R GH L+ G N QD G +A + NG++++ E+L
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 18/86 (20%)
Query: 16 QDLLEAARNGNIQVVEKILS----------------QRAKRSGPLAREIVELLLTNEAST 59
+ LLEAAR G V +++ A R G L EIVE+LL A
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHL--EIVEVLLKAGADV 61
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVL 85
N D G + ++ GN D+ +L
Sbjct: 62 NAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 205 ALHHAALNGH-KEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPN 263
++H A G ++ E L + N D +G +PL A+ G ++ VR LL G +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA---D 61
Query: 264 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
+++ K+ E+AL A+ G+T +V LLE D I + T L A + ++ V+ L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 324 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSV-------VARLLQAGL 368
+ L A S +P+ LA G+R V + +L Q+ L
Sbjct: 122 LARGADL----TTEADSGY---TPMDLAVALGYRKVQQVIENHILKLFQSNL 166
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 59 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVV 118
N D +G +PL A+ G ++ VR LL G + +++ K+ E+AL A+ G+T +V
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGA---DPHILAKERESALSLASTGGYTDIV 85
Query: 119 SQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
LLE D I + T L A + ++ V+ L+
Sbjct: 86 GLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL 122
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Query: 265 NLMTKDNE---TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 321
NL+ K +E T L A+ +G V LLE DP I E+AL LA+ G + V
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 322 TLVRTHPGL-IQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASGTAL 380
L+ + I +N +PL A R H V LL G D+ SG
Sbjct: 87 LLLERDVDINIYDWNG--------GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP 138
Query: 381 HEAALCGKLEVVKTLLEH 398
+ A+ V+ ++E+
Sbjct: 139 MDLAVALGYRKVQQVIEN 156
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 141 LAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDS 200
LAAQ G L+ + +R L+ + R + L AS L G ++
Sbjct: 9 LAAQ-GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK 67
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
SAL A+ G+ +IV LLL + NI D G +PL A +V V LL G
Sbjct: 68 ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 301 NSRHETALDLAAQYGRLETVDTLVR--THPGLIQAYNARAQSTLFPASPLHLASRNGHRS 358
+ R T L A+ +G +ETV L+ P ++ A+ + S L LAS G+
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHIL----AKERE-----SALSLASTGGYTD 83
Query: 359 VVARLLQAGLDVNIRTAS-GTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
+V LL+ +D+NI + GT L A ++ V+ LL GADL T +DL
Sbjct: 84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDL 141
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 89
+IV LLL + NI D G +PL A +V V LL G
Sbjct: 83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L+ G N DS+G LHHA + GH + L L A D++G PL +A T N
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314
Query: 249 DIVRVL 254
DIV +L
Sbjct: 315 DIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L+ G N DS+G LHHA + GH + L L A D++G PL +A T N
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314
Query: 249 DIVRVL 254
DIV +L
Sbjct: 315 DIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L+ G N DS+G LHHA + GH + L L A D++G PL +A T N
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314
Query: 249 DIVRVL 254
DIV +L
Sbjct: 315 DIVTLL 320
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 18/172 (10%)
Query: 205 ALHHAALNGH-KEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPN 263
++H A G ++ E L + N D +G +PL A+ G ++ VR LL G +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA---D 61
Query: 264 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
+++ K+ E+AL A+ G+T +V LLE D I + T L A ++ V+ L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL 121
Query: 324 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSV-------VARLLQAGL 368
+ L A S +P+ LA G+R V + +L Q+ L
Sbjct: 122 LARGADL----TTEADSGY---TPMDLAVALGYRKVQQVIENHILKLFQSNL 166
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 59 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVV 118
N D +G +PL A+ G ++ VR LL G + +++ K+ E+AL A+ G+T +V
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGA---DPHILAKERESALSLASTGGYTDIV 85
Query: 119 SQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
LLE D I + T L A ++ V+ L+
Sbjct: 86 GLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALL 122
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 141 LAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDS 200
LAAQ G L+ + +R L+ + R + L AS L G ++
Sbjct: 9 LAAQ-GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK 67
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
SAL A+ G+ +IV LLL + NI D G +PL A +V V LL G
Sbjct: 68 ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 12/138 (8%)
Query: 265 NLMTKDNE---TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 321
NL+ K +E T L A+ +G V LLE DP I E+AL LA+ G + V
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 322 TLVRTHPGL-IQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASGTAL 380
L+ + I +N +PL A H V LL G D+ SG
Sbjct: 87 LLLERDVDINIYDWNG--------GTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTP 138
Query: 381 HEAALCGKLEVVKTLLEH 398
+ A+ V+ ++E+
Sbjct: 139 MDLAVALGYRKVQQVIEN 156
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 301 NSRHETALDLAAQYGRLETVDTLVR--THPGLIQAYNARAQSTLFPASPLHLASRNGHRS 358
+ R T L A+ +G +ETV L+ P ++ A+ + S L LAS G+
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHIL----AKERE-----SALSLASTGGYTD 83
Query: 359 VVARLLQAGLDVNIRTAS-GTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
+V LL+ +D+NI + GT L A ++ V+ LL GADL T +DL
Sbjct: 84 IVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDL 141
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 89
+IV LLL + NI D G +PL A +V V LL G
Sbjct: 83 DIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G D VR+L+ +G V + K+ T LH AA+ GH VV LLE D ++
Sbjct: 31 AARAGQDDEVRILMANGADVAAKD---KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 133 SRHETALDLAAQYGRLETVDTL 154
+TA D++ G + + L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G V + K+ T LH AA+ GH VV LLE D ++
Sbjct: 31 AARAGQDDEVRILMANGADVAAKD---KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 302 SRHETALDLAAQYGRLETVDTL 323
+TA D++ G + + L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
L AA G + V +L+ N A D GS+PLHLAA G++++V++LL G V
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKH 409
A+R G V L+ G DV + +G T LH AA G LEVVK LLE GAD+ D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 410 NTVLDL 415
T D+
Sbjct: 91 KTAFDI 96
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 194 GANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV 251
GA+V +D +G + LH AA NGH E+V+LLL A D G + ++ GN D+
Sbjct: 47 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLA 106
Query: 252 RVL 254
+L
Sbjct: 107 EIL 109
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 21/83 (25%)
Query: 12 MGKD--QDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSP 69
MG D + LLEAAR G + V +L+ N A D GS+P
Sbjct: 20 MGSDLGKKLLEAARAGQ-------------------DDEVRILMANGADVAAKDKNGSTP 60
Query: 70 LHLAAWTGNVDIVRVLLCHGPSV 92
LHLAA G++++V++LL G V
Sbjct: 61 LHLAARNGHLEVVKLLLEAGADV 83
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 345 ASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
++PLHLA+RNGH VV LL+AG DV + G
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 176 ASPLHLASRNGH------SLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
++PLHLA+RNGH L G QD G +A + NG++++ E+L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 192 GPGANVQDSSGYSALHHAALN-GHKEIVELLLTNEASTNI--VDTKGSSPLHLAAWTGNV 248
G + + S SALH AA N V L + + +I +D G + L + A
Sbjct: 189 GADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGR 248
Query: 249 DIV---RVLLCHGPSVPNVNLMTKDNE-----TALHCAAQYGHTPVVSQLL-EHSCDPTI 299
D V ++L+ G V KD+E TALH AAQ + P+V L+ E +
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDK 308
Query: 300 RNSRHETALDLAAQYGRLETVDTLVR 325
++ +T + LAAQ GR+E V L++
Sbjct: 309 QDEDGKTPIXLAAQEGRIEVVXYLIQ 334
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 98/255 (38%), Gaps = 48/255 (18%)
Query: 227 STNIVDTK-GSSPLHLAAWTGNVDIVRVLLCHGPSV-----PNVNLMTKDNETALHCAAQ 280
S NI+D + + LH A + + L+ H +VN D T L A
Sbjct: 116 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVL 175
Query: 281 YGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ----------------YGRLETVD--- 321
+V+ L + DPTI N +AL AA G +E +D
Sbjct: 176 ARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNG 235
Query: 322 ----TLVRTHPGLIQA--------------YN--ARAQSTLFPA-SPLHLASRNGHRSVV 360
+V + G Q Y+ AR S + + LH A++ + +V
Sbjct: 236 XTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIV 295
Query: 361 ARLL-QAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQ 418
L+ + G + + + G T + AA G++EVV L++ GA + +D+ +T L +
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQA 355
Query: 419 FPPHAVHDISTIINP 433
H + DI P
Sbjct: 356 NNHHNIVDIFDRCRP 370
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 84/216 (38%), Gaps = 25/216 (11%)
Query: 57 ASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG--PSVPNVNLMTKDNETALHCAA---Q 111
A N D ++PL LA +V L G P++ N K +ALH AA
Sbjct: 157 ADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYN-----KSERSALHQAAANRD 211
Query: 112 YGHT--PVVSQLLEHSCDPTIRNSRHETALDLAA-QYGRLETVDTLVRTHPGLIQAYN-- 166
+G + S L+ + RN TAL + A GR + + G Y+
Sbjct: 212 FGXXVYXLNSTKLKGDIEELDRNG--XTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269
Query: 167 ARAQSTLFPA-SPLHLASRNGHSL-------RRGPGANVQDSSGYSALHHAALNGHKEIV 218
AR S + + LH A++ + +G + QD G + + AA G E+V
Sbjct: 270 ARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVV 329
Query: 219 ELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVL 254
L+ AS VD + LA + +IV +
Sbjct: 330 XYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
+ G +ALH+A + IV+ L+T A+ N D+ G +PLH AA + I L+ HG
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 259 PSVPNVNLMTKDNETALHCAAQY--GHTPVVSQLLEHSCDPTIRNSRHETAL-DLAAQYG 315
++ L D TA Y G+ + L + + NS AL D +A++G
Sbjct: 111 AAIFATTL--SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG 168
Query: 316 ------RLETVDTLVRTHP 328
E+V L R P
Sbjct: 169 DELSFREGESVTVLRRDGP 187
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 25/165 (15%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGP--------------LAREIVELLLTNEASTNIVD 63
LL+AA G ++VV++ + + S P IV+ L+T A+ N D
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQY--GHTPVVSQL 121
+ G +PLH AA + I L+ HG ++ L D TA Y G+ + L
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIFATTL--SDGATAFEKCDPYREGYADCATYL 142
Query: 122 LEHSCDPTIRNSRHETAL-DLAAQYG------RLETVDTLVRTHP 159
+ + NS AL D +A++G E+V L R P
Sbjct: 143 ADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGP 187
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AAL G E+V+ + + + +G + LH A N IV L+ G NVN
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAG---ANVN 81
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEH 293
T LHCAA T + L++H
Sbjct: 82 SPDSHGWTPLHCAASCNDTVICMALVQH 109
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 311 AAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDV 370
AA G LE V V+ N +Q + LH A + S+V L+ AG +V
Sbjct: 28 AALTGELEVVQQAVKEM-------NDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Query: 371 NIRTASG-TALHEAALCGKLEVVKTLLEHGA 400
N + G T LH AA C + L++HGA
Sbjct: 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L AA G + V +L+ N A D GS+PLHLAA G++++V++LL G +VN
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG---ADVN 66
Query: 266 LMTKDNETALHCAAQYGH 283
K +TA + G+
Sbjct: 67 AQDKFGKTAFDISIDNGN 84
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 194 GANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV 251
GA+V +D +G + LH AA NGH E+V+LLL A N D G + ++ GN D+
Sbjct: 29 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLA 88
Query: 252 RVL 254
+L
Sbjct: 89 EIL 91
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKH 409
A+R G V L+ G DV + +G T LH AA G LEVVK LLE GAD+ D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 410 NTVLDL 415
T D+
Sbjct: 73 KTAFDI 78
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
AA G D VR+L+ +G V + K+ T LH AA+ GH VV LLE D ++
Sbjct: 13 AARAGQDDEVRILMANGADVAAKD---KNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 133 SRHETALDLAAQYGRLETVDTL 154
+TA D++ G + + L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
AA G D VR+L+ +G V + K+ T LH AA+ GH VV LLE D ++
Sbjct: 13 AARAGQDDEVRILMANGADVAAKD---KNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 302 SRHETALDLAAQYGRLETVDTL 323
+TA D++ G + + L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 345 ASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
++PLHLA+RNGH VV LL+AG DVN + G
Sbjct: 40 STPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 24/105 (22%)
Query: 12 MGKD--QDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSP 69
MG D + LLEAAR G + V +L+ N A D GS+P
Sbjct: 2 MGSDLGKKLLEAARAGQ-------------------DDEVRILMANGADVAAKDKNGSTP 42
Query: 70 LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 114
LHLAA G++++V++LL G +VN K +TA + G+
Sbjct: 43 LHLAARNGHLEVVKLLLEAG---ADVNAQDKFGKTAFDISIDNGN 84
Score = 37.0 bits (84), Expect = 0.022, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 176 ASPLHLASRNGH------SLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
++PLHLA+RNGH L G N QD G +A + NG++++ E+L
Sbjct: 40 STPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 7/205 (3%)
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
D G S + A NV +V LL G NL+ +NE LH AA T +V LL
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIVKILL 82
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 182
D + + + TAL A G +TV V+ + L +++ + A L+
Sbjct: 83 FSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDV 142
Query: 183 SRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSP-LHL 241
S + L P + S +H NGH + LLL STN ++ P + L
Sbjct: 143 SIVSYFLSEIPST-FDLAILLSCIHITIKNGHVDXXILLLDYXTSTNTNNSLLFIPDIKL 201
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNL 266
A +++ ++ L + ++ + NL
Sbjct: 202 AIDNKDIEXLQALFKYDINIYSANL 226
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
D G S + A NV +V LL G NL+ +NE LH AA T +V LL
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIVKILL 82
Query: 292 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 330
D + + + TAL A G +TV V+ + L
Sbjct: 83 FSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRL 121
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 191 RGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDI 250
+G N G LH+AA G EI+E LL A N D +PL A + G+V
Sbjct: 29 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 88
Query: 251 VRVLLCHG 258
V++LL G
Sbjct: 89 VKLLLSKG 96
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG--TALHEAALCGKLEVVKTLLEHGADLRIIDSK 408
A +NG V + G DVN RT G LH AA CG+LE+++ LL GAD+ D
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 409 HNTVL 413
H T L
Sbjct: 73 HITPL 77
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
G PLH AA G ++I+ LL G ++N K + T L A GH V LL
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKG---ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96
Query: 126 CDPTIRNSRHETALD 140
D T++ TA +
Sbjct: 97 ADKTVKGPDGLTAFE 111
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
G PLH AA G ++I+ LL G ++N K + T L A GH V LL
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKG---ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96
Query: 295 CDPTIRNSRHETALD 309
D T++ TA +
Sbjct: 97 ADKTVKGPDGLTAFE 111
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 15 DQDLLEAARNGNIQVVEKILSQ-----RAKRSG--PL-------AREIVELLLTNEASTN 60
D++ + A +NG++ V+ +++ R G PL EI+E LL A N
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 61 IVDTKGSSPLHLAAWTGNVDIVRVLLCHG 89
D +PL A + G+V V++LL G
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKG 96
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 347 PLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGAD 401
PLH A+ G ++ LL G D+N T L A G + VK LL GAD
Sbjct: 43 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 33/68 (48%)
Query: 191 RGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDI 250
+G N G LH+AA G EI+E LL A N D +PL A + G+V
Sbjct: 24 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 83
Query: 251 VRVLLCHG 258
V++LL G
Sbjct: 84 VKLLLSKG 91
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG--TALHEAALCGKLEVVKTLLEHGADLRIIDSK 408
A +NG V + G DVN RT G LH AA CG+LE+++ LL GAD+ D
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 409 HNTVL 413
H T L
Sbjct: 68 HITPL 72
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
G PLH AA G ++I+ LL G ++N K + T L A GH V LL
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGA---DINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 91
Query: 126 CDPTIRNSRHETALD 140
D T++ TAL+
Sbjct: 92 ADKTVKGPDGLTALE 106
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
G PLH AA G ++I+ LL G ++N K + T L A GH V LL
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKG---ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 91
Query: 295 CDPTIRNSRHETALD 309
D T++ TAL+
Sbjct: 92 ADKTVKGPDGLTALE 106
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 15 DQDLLEAARNGNIQVVEKILSQ-----RAKRSG--PL-------AREIVELLLTNEASTN 60
D++ + A +NG++ V+ +++ R G PL EI+E LL A N
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
Query: 61 IVDTKGSSPLHLAAWTGNVDIVRVLLCHG 89
D +PL A + G+V V++LL G
Sbjct: 63 APDKHHITPLLSAVYEGHVSCVKLLLSKG 91
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 347 PLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGAD 401
PLH A+ G ++ LL G D+N T L A G + VK LL GAD
Sbjct: 38 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 53 LTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQY 112
L + + VD G + L A G+ VR+L G + + ++ + TALH AA Y
Sbjct: 64 LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM--RGGLTALHMAAGY 121
Query: 113 GHTPVVSQLLEHSCDPTIRNSRHETALDLA------------AQYGRLETVDTLVRTHPG 160
VV L+E D + + R TAL+LA Q+GR ++ ++ G
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG 181
Query: 161 LIQAY 165
+ Y
Sbjct: 182 QVFEY 186
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 222 LTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQY 281
L + + VD G + L A G+ VR+L G + + ++ + TALH AA Y
Sbjct: 64 LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM--RGGLTALHMAAGY 121
Query: 282 GHTPVVSQLLEHSCDPTIRNSRHETALDLA------------AQYGRLETVDTLVRTHPG 329
VV L+E D + + R TAL+LA Q+GR ++ ++ G
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG 181
Query: 330 LIQAY 334
+ Y
Sbjct: 182 QVFEY 186
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 355 GHRSVVARLLQAGLDVNIRTASG--TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTV 412
G V L +AG D++ R G TALH AA + EVV+ L+E GAD+ + D + T
Sbjct: 88 GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 147
Query: 413 LDLLKQF 419
L+L ++
Sbjct: 148 LELAREI 154
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 53 LTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQY 112
L + + VD G + L A G+ VR+L G + + ++ + TALH AA Y
Sbjct: 63 LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM--RGGLTALHMAAGY 120
Query: 113 GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 144
VV L+E D + + R TAL+LA +
Sbjct: 121 VRPEVVEALVELGADIEVEDERGLTALELARE 152
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 222 LTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQY 281
L + + VD G + L A G+ VR+L G + + ++ + TALH AA Y
Sbjct: 63 LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM--RGGLTALHMAAGY 120
Query: 282 GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 313
VV L+E D + + R TAL+LA +
Sbjct: 121 VRPEVVEALVELGADIEVEDERGLTALELARE 152
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 355 GHRSVVARLLQAGLDVNIRTASG--TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTV 412
G V L +AG D++ R G TALH AA + EVV+ L+E GAD+ + D + T
Sbjct: 87 GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 146
Query: 413 LDLLKQF 419
L+L ++
Sbjct: 147 LELAREI 153
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 47/206 (22%)
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN-------LMTKDNETALHCAAQYGH 114
+D G+S L LA GN ++ C PS V + KD TA + +Y
Sbjct: 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYA- 120
Query: 115 TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST-L 173
R +TA L + ++T D GL+QAY T
Sbjct: 121 ----------------RKKHADTAAKLHSLCEAVKTRDIF-----GLLQAYADGVDLTEK 159
Query: 174 FP--------ASPLHLASRN---------GHSLRRGPGANVQDSSGYSALHHAALNGHKE 216
P + LHLA R+ ++ + Q G +ALH+ L + E
Sbjct: 160 IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE 219
Query: 217 IVELLLTNEASTNIVDTKGSSPLHLA 242
++LLL +AS I + G +PL +A
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIA 245
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 82/209 (39%), Gaps = 42/209 (20%)
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN-------LMTKDNETALHCAAQYGH 283
+D G+S L LA GN ++ C PS V + KD TA + +Y
Sbjct: 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYA- 120
Query: 284 TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST-L 342
R +TA L + ++T D GL+QAY T
Sbjct: 121 ----------------RKKHADTAAKLHSLCEAVKTRDIF-----GLLQAYADGVDLTEK 159
Query: 343 FP--------ASPLHLASRNGHRS---VVARLLQAGLDVNIRTASG-TALHEAALCGKLE 390
P + LHLA R+ R+ +V L+Q +++ +T G TALH L E
Sbjct: 160 IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE 219
Query: 391 VVKTLLEHGADLRIIDSKHNTVLDLLKQF 419
+K LL A + I + T LD+ K+
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIAKRL 248
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
IV+ L+ N + + KGS+ LH T N + +++LL S+ N + ET L
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN---ESGETPLD 243
Query: 108 CAAQYGH 114
A + H
Sbjct: 244 IAKRLKH 250
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
N D G SALH AA + + +LL N A+ ++ + K +PL LAA G+ + +VLL
Sbjct: 42 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 101
Query: 256 CH 257
H
Sbjct: 102 DH 103
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
++E L+ + A N VD G S LH AA NVD VLL +G N ++ ET L
Sbjct: 30 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG---ANKDMQNNKEETPLF 86
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 144
AA+ G LL+H + I + D+A +
Sbjct: 87 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 123
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 217 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 276
++E L+ + A N VD G S LH AA NVD VLL +G N ++ ET L
Sbjct: 30 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG---ANKDMQNNKEETPLF 86
Query: 277 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 313
AA+ G LL+H + I + D+A +
Sbjct: 87 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 123
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
G++PL LAA ++ L+ V V+ + K +ALH AA + LL++
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGK---SALHWAAAVNNVDAAVVLLKNG 71
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLV 155
+ ++N++ ET L LAA+ G ET L+
Sbjct: 72 ANKDMQNNKEETPLFLAAREGSYETAKVLL 101
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
G++PL LAA ++ L+ V V+ + K +ALH AA + LL++
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGK---SALHWAAAVNNVDAAVVLLKNG 71
Query: 295 CDPTIRNSRHETALDLAAQYGRLETVDTLV 324
+ ++N++ ET L LAA+ G ET L+
Sbjct: 72 ANKDMQNNKEETPLFLAAREGSYETAKVLL 101
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 85/223 (38%), Gaps = 33/223 (14%)
Query: 200 SSGYSALHHAALNGHKEIVELLLTNEASTNIVDTK---GSSPLHLAAWTGNVDIVRVLLC 256
G +ALH A ++ H+ ++ LL A +D + G + LHLAA G V L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 257 HGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY-- 314
G V + + TALH A + + H+C + R D + Y
Sbjct: 67 AGA---GVLVAERGGHTALHLACR---------VRAHTCACVLLQPRPSHPRDASDTYLT 114
Query: 315 -GRLETVDT-----LVRTHPGLIQAYNARAQSTLFPA--------SPLHLASRNGHRSVV 360
+ T DT V + P R + +PLH+A + +V
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMV 174
Query: 361 ARLLQAGLDVNI--RTASGTALHEAALCGKLEVVKTLLEHGAD 401
L AG D+N T T LH A V++ LL+ GAD
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 80/213 (37%), Gaps = 14/213 (6%)
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
V G + LHLA + + LL ++L +TALH AA G V
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG---------LIQAYNARAQ 170
+L + TAL LA + L++ P L Q+ +
Sbjct: 63 KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
Query: 171 STLFPASPLHLASRNGHSLRRGPGANVQ----DSSGYSALHHAALNGHKEIVELLLTNEA 226
++ PA+ + R +Q + G++ LH A ++ E+V LL A
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182
Query: 227 STNIVD-TKGSSPLHLAAWTGNVDIVRVLLCHG 258
N + T G +PLHLA ++ +LL G
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 79/222 (35%), Gaps = 28/222 (12%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
++Q+ G +ALH AA+ G VE L A + + G + LHLA VLL
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Query: 256 CHGPSVP---NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAA 312
PS P + +T+ + C H P P N D
Sbjct: 99 QPRPSHPRDASDTYLTQSQD----CTPDTSHAPAAV-----DSQPNPENEEEPRDEDWRL 149
Query: 313 QYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA-------------SPLHLASRNGHRSV 359
Q E D H +I +A L A +PLHLA SV
Sbjct: 150 QL-EAENYDGHTPLHVAVIHK-DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 360 VARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGA 400
+ LL+AG D R G T L A L + + L HGA
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 85/223 (38%), Gaps = 33/223 (14%)
Query: 200 SSGYSALHHAALNGHKEIVELLLTNEASTNIVDTK---GSSPLHLAAWTGNVDIVRVLLC 256
G +ALH A ++ H+ ++ LL A +D + G + LHLAA G V L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 257 HGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY-- 314
G V + + TALH A + + H+C + R D + Y
Sbjct: 67 AGA---GVLVAERGGHTALHLACR---------VRAHTCACVLLQPRPSHPRDASDTYLT 114
Query: 315 -GRLETVDT-----LVRTHPGLIQAYNARAQSTLFPA--------SPLHLASRNGHRSVV 360
+ T DT V + P R + +PLH+A + +V
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMV 174
Query: 361 ARLLQAGLDVNI--RTASGTALHEAALCGKLEVVKTLLEHGAD 401
L AG D+N T T LH A V++ LL+ GAD
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 80/213 (37%), Gaps = 14/213 (6%)
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
V G + LHLA + + LL ++L +TALH AA G V
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG---------LIQAYNARAQ 170
+L + TAL LA + L++ P L Q+ +
Sbjct: 63 KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
Query: 171 STLFPASPLHLASRNGHSLRRGPGANVQ----DSSGYSALHHAALNGHKEIVELLLTNEA 226
++ PA+ + R +Q + G++ LH A ++ E+V LL A
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182
Query: 227 STNIVD-TKGSSPLHLAAWTGNVDIVRVLLCHG 258
N + T G +PLHLA ++ +LL G
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 79/222 (35%), Gaps = 28/222 (12%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
++Q+ G +ALH AA+ G VE L A + + G + LHLA VLL
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Query: 256 CHGPSVP---NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAA 312
PS P + +T+ + C H P P N D
Sbjct: 99 QPRPSHPRDASDTYLTQSQD----CTPDTSHAPAAV-----DSQPNPENEEEPRDEDWRL 149
Query: 313 QYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA-------------SPLHLASRNGHRSV 359
Q E D H +I +A L A +PLHLA SV
Sbjct: 150 QL-EAENYDGHTPLHVAVIHK-DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 360 VARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGA 400
+ LL+AG D R G T L A L + + L HGA
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
>pdb|3NOH|A Chain A, Crystal Structure Of A Putative Peptide Binding Protein
(Rumgna_00914) From Ruminococcus Gnavus Atcc 29149 At
1.60 A Resolution
Length = 139
Score = 32.3 bits (72), Expect = 0.50, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 358 SVVARLLQAGLDVNIRTASGTALHEAALCGKLE-------VVKTLLEHGADLRIIDS 407
S+ RL AG DV I+ SGT L A+ GK E +V T AD I+DS
Sbjct: 79 SLCERLNDAGADVQIKQYSGTXLRSRAVSGKYEAFLSESDLVSTDALENADYIILDS 135
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 42/200 (21%)
Query: 183 SRNGHSLRRGPGANVQDS--SGYSALHHAALNGHKEIVELLLTN----EASTN---IVDT 233
+R SL++ A+ DS G +ALH A + +V LL+ N +A+ N T
Sbjct: 80 ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKT 139
Query: 234 KGSS-------PLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPV 286
KG PL LAA T + IV+ LL + +++ T LH
Sbjct: 140 KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHA--------- 190
Query: 287 VSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL-IQAYNARAQSTLFPA 345
L D T+ N++ T + Y + + + HP L ++ R T
Sbjct: 191 ----LVEVADNTVDNTKFVT-----SXYNEILILG--AKLHPTLKLEEITNRKGLT---- 235
Query: 346 SPLHLASRNGHRSVVARLLQ 365
PL LA+ +G V+A +LQ
Sbjct: 236 -PLALAASSGKIGVLAYILQ 254
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 101/261 (38%), Gaps = 43/261 (16%)
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGH-KEIVELLLTNE 225
A Q LFP S N S R N + S H + + +E+ + +
Sbjct: 65 AFLQRLLFPEIQEMPTSLNNDSSNR----NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ 120
Query: 226 ASTNI-VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNE------TALHCA 278
+ NI VD G++PLH N+++V+ L+ HG N + DN A+
Sbjct: 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS-----NRLYGDNMGESCLVKAVKSV 175
Query: 279 AQYGHTPVVSQL--------LEHSCDPTIRN----SRHETALDLAAQYGRLETVDTLVRT 326
Y + L LE S + TI + + T AA+Y + +V+
Sbjct: 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235
Query: 327 HPGLIQAYNARAQSTLFPASPLHLASRNGHR--SVVARLLQAGLDVNIRTA----SGTAL 380
IQ+ +S P +NG R S++ L + N+ A T L
Sbjct: 236 QNRPIQSGTNEKES-----KP---NDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 287
Query: 381 HEAALCGKLEVVKTLLEHGAD 401
+ AA G + +V LL++GAD
Sbjct: 288 NIAARLGNISIVDALLDYGAD 308
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAA 243
N QDS+G + L+ AA G+ IV+ LL A I + G P+ A
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
>pdb|3Q9N|A Chain A, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|B Chain B, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 141
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 391 VVKTLLEHGADLRIIDSKHNTVLDLLKQFP-----PHAVHDISTIINPVMSYEFLV 441
V+K LLEHG D+ ++ + VL K +P P V + +NP ++ F+V
Sbjct: 39 VMKYLLEHGYDVYPVNPNYEEVLG-RKCYPSVLDIPDKVEVVDLFVNPAKAWRFVV 93
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 348 LHLASRNGHRS---VVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLR 403
LHLA + +++ +V ++Q G ++ + A G TALH AAL + + +K LL+ A +
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 404 IIDSKHNTVLDLLKQ 418
++ T LD+ ++
Sbjct: 254 TVNEAGETALDIARK 268
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLA 242
++ G + + + G +ALH+AAL + ++LLL A V+ G + L +A
Sbjct: 213 IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 348 LHLASRNGHRS---VVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLR 403
LHLA + +++ +V ++Q G ++ + A G TALH AAL + + +K LL+ A +
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 404 IIDSKHNTVLDLLKQ 418
++ T LD+ ++
Sbjct: 235 TVNEAGETALDIARK 249
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLA 242
++ G + + + G +ALH+AAL + ++LLL A V+ G + L +A
Sbjct: 194 IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 58/163 (35%), Gaps = 36/163 (22%)
Query: 93 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 152
P ++++ ++ L AA G V QLLE DP N ++GR
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN-----------RFGR----- 46
Query: 153 TLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYS-ALHHAAL 211
P + + + L L G N D + + +H AA
Sbjct: 47 -----RPIQVMMMGSAQVAELL--------------LLHGAEPNCADPATLTRPVHDAAR 87
Query: 212 NGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVL 254
G + + +L A ++ D G P+ LA G+ DI R L
Sbjct: 88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 262 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
P ++++ ++ L AA G V QLLE DP N
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN 42
>pdb|3A06|A Chain A, Crystal Structure Of Dxr From Thermooga Maritia, In
Complex Fosmidomycin And Nadph
pdb|3A06|B Chain B, Crystal Structure Of Dxr From Thermooga Maritia, In
Complex Fosmidomycin And Nadph
pdb|3A14|A Chain A, Crystal Structure Of Dxr From Thermotoga Maritima, In
Comple Nadph
pdb|3A14|B Chain B, Crystal Structure Of Dxr From Thermotoga Maritima, In
Comple Nadph
Length = 376
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 382 EAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLK 417
E+ +CG V K L E G +L +DS+H+ + +++
Sbjct: 118 ESLVCGGFLVKKKLKEKGTELIPVDSEHSAIFQVME 153
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEASTNI-------------VDTKGSSPLHLAAWTGNV 248
G+SALH A + V+LL+ N A ++ G PL LAA T
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 249 DIVRVLLCHGPSVPNVNLMTKDN--ETALHCAAQYG-HTPVVSQLLEHSCD--------- 296
D+V LL P P +L D+ T LH ++P S L+ H D
Sbjct: 163 DVVTYLL-ENPHQP-ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 220
Query: 297 -PTIR-----NSRHETALDLAAQYGRLE 318
PT++ N + T L LAA+ G++E
Sbjct: 221 CPTVQLEEISNHQGLTPLKLAAKEGKIE 248
>pdb|4DZH|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Xanthomonas Campestris (Target Nysgrc-200456) With Bound
Zn
Length = 472
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 120 QLLEHSCDPTIRNSRHETALDLA---AQYGR--LETVDTLVRTHPGLIQAYNARAQSTLF 174
++L D + HETA ++A AQYG+ L +D L GL+ T
Sbjct: 215 RMLADQLDMPVHLHTHETAQEVADSVAQYGQRPLARLDRL-----GLVNDRLIAVHMTQL 269
Query: 175 PASPLHLASRNGHSLRRGPGANVQDSSGY---SALHHAALN 212
+ +HL + G S+ P +N++ +SG+ AL A++N
Sbjct: 270 TEAEIHLCAERGVSVVHCPESNLKLASGFCPACALQRASVN 310
>pdb|3J20|H Chain H, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 215
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 146 GRLETVDTLVRT---------HPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196
GR T D VR P L+ + R F + +H+ R + + R G++
Sbjct: 19 GRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSH 78
Query: 197 VQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAW 244
+ + + H +LN K++ + EA I G +P+ + W
Sbjct: 79 YKVAGHFMRREHRSLNS-KKVKAYEVVKEAFKIIEQRTGKNPIQVLVW 125
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEASTNI-------------VDTKGSSPLHLAAWTGNV 248
G+SALH A + V+LL+ N A ++ G PL LAA T
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 249 DIVRVLLCHGPSVPNVNLMTKDN--ETALHCAAQYG-HTPVVSQLLEHSCD--------- 296
D+V LL P P +L D+ T LH ++P S L+ H D
Sbjct: 150 DVVTYLL-ENPHQP-ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 207
Query: 297 -PTIR-----NSRHETALDLAAQYGRLE 318
PT++ N + T L LAA+ G++E
Sbjct: 208 CPTVQLEEISNHQGLTPLKLAAKEGKIE 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,502,600
Number of Sequences: 62578
Number of extensions: 536014
Number of successful extensions: 3226
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1312
Number of HSP's gapped (non-prelim): 857
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)