Query psy2184
Match_columns 459
No_of_seqs 262 out of 2694
Neff 11.5
Searched_HMMs 29240
Date Fri Aug 16 18:24:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 1.8E-61 6.1E-66 455.9 45.7 381 13-432 13-400 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.2E-57 4E-62 429.8 42.1 367 55-453 3-376 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 5.9E-47 2E-51 344.1 35.7 291 64-405 23-330 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 2.5E-46 8.5E-51 339.9 35.2 300 14-374 25-331 (337)
5 1wdy_A 2-5A-dependent ribonucl 100.0 1.1E-44 3.9E-49 321.6 33.7 263 65-407 4-284 (285)
6 3utm_A Tankyrase-1; tankyrase, 100.0 8.9E-45 3E-49 332.3 34.0 293 14-416 24-320 (351)
7 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-45 3.7E-50 338.4 25.4 276 61-428 19-299 (351)
8 1wdy_A 2-5A-dependent ribonucl 100.0 6.3E-43 2.1E-47 310.4 33.6 268 13-329 4-278 (285)
9 2fo1_E LIN-12 protein; beta-ba 100.0 2.7E-43 9.3E-48 323.4 20.5 321 14-401 37-371 (373)
10 3d9h_A CDNA FLJ77766, highly s 100.0 6.7E-42 2.3E-46 302.3 26.4 262 62-404 11-282 (285)
11 3d9h_A CDNA FLJ77766, highly s 100.0 2.9E-41 1E-45 298.1 26.0 264 11-326 12-275 (285)
12 1yyh_A HN1;, notch 1, ankyrin 100.0 3.1E-41 1E-45 293.2 24.5 234 58-329 2-248 (253)
13 3ljn_A Hypothetical protein; a 100.0 3E-42 1E-46 316.5 18.0 292 56-369 10-314 (364)
14 2xai_A ASB-9, ankyrin repeat a 100.0 2.1E-40 7.3E-45 289.2 27.2 256 65-364 2-258 (261)
15 2fo1_E LIN-12 protein; beta-ba 100.0 3.1E-41 1.1E-45 309.7 20.4 281 18-369 70-371 (373)
16 3b7b_A Euchromatic histone-lys 100.0 1.1E-39 3.9E-44 280.9 28.5 230 57-325 2-231 (237)
17 1k1a_A B-cell lymphoma 3-encod 100.0 3E-40 1E-44 285.4 23.8 232 60-327 3-239 (241)
18 2xai_A ASB-9, ankyrin repeat a 100.0 6.6E-40 2.3E-44 286.0 25.8 250 13-325 2-259 (261)
19 3aji_A 26S proteasome non-ATPa 100.0 5.1E-39 1.7E-43 275.7 25.0 227 63-328 3-229 (231)
20 3ljn_A Hypothetical protein; a 100.0 7.4E-41 2.5E-45 307.3 14.3 269 94-408 12-321 (364)
21 1oy3_D Transcription factor in 100.0 2.4E-39 8.1E-44 286.8 23.4 254 59-315 2-269 (282)
22 1yyh_A HN1;, notch 1, ankyrin 100.0 2.9E-39 9.9E-44 280.7 22.3 226 194-429 2-243 (253)
23 3b7b_A Euchromatic histone-lys 100.0 2.1E-38 7.3E-43 273.0 27.5 219 194-422 3-223 (237)
24 3aji_A 26S proteasome non-ATPa 100.0 9.6E-39 3.3E-43 274.0 24.4 226 13-296 5-230 (231)
25 1oy3_D Transcription factor in 100.0 2.1E-38 7.2E-43 280.7 23.4 219 195-422 2-271 (282)
26 1k1a_A B-cell lymphoma 3-encod 100.0 4.9E-38 1.7E-42 271.5 24.0 229 12-295 7-240 (241)
27 4b93_B Ankyrin repeat domain-c 100.0 5.6E-39 1.9E-43 279.9 16.1 229 61-326 6-241 (269)
28 3eu9_A Huntingtin-interacting 100.0 4.8E-37 1.6E-41 265.2 27.3 232 59-330 2-236 (240)
29 4b93_B Ankyrin repeat domain-c 100.0 3.3E-38 1.1E-42 275.0 18.0 233 14-297 11-245 (269)
30 3kea_A K1L; tropism, ANK repea 100.0 6.5E-38 2.2E-42 276.6 19.8 233 45-329 12-246 (285)
31 2dzn_A Probable 26S proteasome 100.0 3.3E-37 1.1E-41 263.9 23.2 221 66-325 2-226 (228)
32 3eu9_A Huntingtin-interacting 100.0 1.8E-36 6.1E-41 261.6 26.7 234 96-405 3-239 (240)
33 1s70_B 130 kDa myosin-binding 100.0 1.1E-37 3.8E-42 278.4 18.6 218 199-419 37-275 (299)
34 2f8y_A Notch homolog 1, transl 100.0 9.7E-37 3.3E-41 260.0 23.4 208 49-296 7-216 (223)
35 3kea_A K1L; tropism, ANK repea 100.0 1.9E-37 6.6E-42 273.5 19.3 211 75-329 8-220 (285)
36 2dzn_A Probable 26S proteasome 100.0 9.7E-37 3.3E-41 261.0 23.1 210 202-419 2-218 (228)
37 2f8y_A Notch homolog 1, transl 100.0 1.8E-36 6.2E-41 258.3 23.5 214 77-329 2-216 (223)
38 1s70_B 130 kDa myosin-binding 100.0 6.3E-37 2.2E-41 273.5 19.3 243 20-312 4-273 (299)
39 1sw6_A Regulatory protein SWI6 100.0 3.9E-38 1.3E-42 283.5 6.1 283 65-420 22-327 (327)
40 1ikn_D Protein (I-kappa-B-alph 100.0 1.1E-35 3.6E-40 255.7 14.2 221 61-312 3-227 (236)
41 1sw6_A Regulatory protein SWI6 100.0 2.6E-36 8.8E-41 271.7 7.6 267 46-387 32-327 (327)
42 2rfa_A Transient receptor pote 100.0 6E-34 2.1E-38 244.2 21.7 210 65-298 2-224 (232)
43 1ikn_D Protein (I-kappa-B-alph 100.0 1.2E-35 4E-40 255.4 10.2 216 197-422 3-232 (236)
44 3hra_A Ankyrin repeat family p 100.0 5E-33 1.7E-37 232.9 24.9 193 64-294 3-201 (201)
45 2rfa_A Transient receptor pote 100.0 5.3E-33 1.8E-37 238.3 23.8 197 101-329 2-222 (232)
46 3hra_A Ankyrin repeat family p 100.0 1.2E-32 4.3E-37 230.5 25.2 192 13-258 4-201 (201)
47 4gpm_A Engineered protein OR26 100.0 8.4E-33 2.9E-37 222.2 21.4 158 16-229 6-163 (169)
48 2pnn_A Transient receptor pote 100.0 3E-33 1E-37 245.9 14.3 232 56-307 3-270 (273)
49 4gpm_A Engineered protein OR26 100.0 7.7E-32 2.6E-36 216.6 21.3 155 68-259 6-160 (169)
50 2etb_A Transient receptor pote 100.0 3.2E-33 1.1E-37 243.3 14.1 200 14-259 2-245 (256)
51 2etb_A Transient receptor pote 100.0 1.2E-32 4.1E-37 239.7 15.1 200 65-330 1-247 (256)
52 2pnn_A Transient receptor pote 100.0 9.6E-33 3.3E-37 242.7 13.7 213 194-413 5-271 (273)
53 3jxi_A Vanilloid receptor-rela 100.0 1.6E-31 5.3E-36 233.3 13.9 200 14-259 5-249 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 9.7E-31 3.3E-35 228.3 15.3 133 195-330 86-251 (260)
55 2aja_A Ankyrin repeat family p 100.0 7.9E-34 2.7E-38 257.1 -5.6 272 68-426 67-366 (376)
56 2rfm_A Putative ankyrin repeat 100.0 9.3E-30 3.2E-34 211.1 17.6 163 59-258 28-190 (192)
57 4hbd_A KN motif and ankyrin re 100.0 5.8E-30 2E-34 224.4 16.0 190 66-293 76-272 (276)
58 3v30_A DNA-binding protein rfx 100.0 1.4E-29 4.8E-34 206.1 16.4 156 68-259 4-159 (172)
59 2y1l_E Darpin-8.4; hydrolase-i 100.0 7.7E-29 2.6E-33 200.9 20.2 159 63-258 11-169 (169)
60 4hbd_A KN motif and ankyrin re 100.0 1.6E-29 5.5E-34 221.6 17.1 190 16-258 78-273 (276)
61 3v31_A Ankyrin repeat family A 100.0 8.6E-29 2.9E-33 200.4 19.5 158 65-259 2-159 (167)
62 3v30_A DNA-binding protein rfx 100.0 3.6E-29 1.2E-33 203.7 17.4 169 102-307 2-171 (172)
63 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.5E-28 8.6E-33 197.8 21.3 157 13-225 13-169 (169)
64 1ihb_A P18-INK4C(INK6), cyclin 100.0 1E-28 3.6E-33 198.9 17.7 157 65-259 4-161 (162)
65 2rfm_A Putative ankyrin repeat 100.0 9.4E-29 3.2E-33 205.0 17.8 162 95-293 28-189 (192)
66 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.9E-28 6.4E-33 197.4 19.0 158 14-227 5-162 (162)
67 3f6q_A Integrin-linked protein 100.0 3.4E-28 1.2E-32 199.1 17.4 97 57-156 30-126 (179)
68 3v31_A Ankyrin repeat family A 100.0 6.5E-28 2.2E-32 195.2 18.8 159 13-227 2-160 (167)
69 1awc_B Protein (GA binding pro 100.0 8.6E-28 2.9E-32 191.3 18.7 150 67-254 3-152 (153)
70 2vge_A RELA-associated inhibit 100.0 1.7E-31 5.8E-36 226.9 -4.0 199 49-288 1-205 (229)
71 1awc_B Protein (GA binding pro 100.0 2.9E-27 9.8E-32 188.3 20.3 150 15-221 3-152 (153)
72 2vge_A RELA-associated inhibit 100.0 1.8E-31 6.2E-36 226.7 -4.4 208 82-329 1-214 (229)
73 3f6q_A Integrin-linked protein 100.0 1E-27 3.5E-32 196.3 17.7 160 64-259 3-162 (179)
74 3twr_A Tankyrase-2; ankyrin re 100.0 5.5E-28 1.9E-32 195.2 15.3 160 63-259 5-164 (165)
75 1bd8_A P19INK4D CDK4/6 inhibit 100.0 3.1E-27 1.1E-31 188.9 18.7 152 15-223 3-154 (156)
76 3twr_A Tankyrase-2; ankyrin re 100.0 2E-27 6.8E-32 191.9 17.2 157 14-226 8-164 (165)
77 1bd8_A P19INK4D CDK4/6 inhibit 100.0 5.5E-27 1.9E-31 187.5 18.3 154 66-257 2-155 (156)
78 2aja_A Ankyrin repeat family p 99.9 8.5E-31 2.9E-35 237.3 -8.5 270 17-365 68-370 (376)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.1E-27 7.2E-32 203.8 8.7 182 64-283 3-193 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.7E-27 5.9E-32 204.3 7.6 177 201-421 4-193 (239)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 3.2E-26 1.1E-30 182.6 10.9 144 232-419 9-154 (156)
82 1d9s_A Cyclin-dependent kinase 99.9 7.7E-26 2.6E-30 175.9 12.7 134 56-227 2-136 (136)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 2.1E-25 7.2E-30 177.9 11.7 144 60-241 6-150 (156)
84 3t8k_A Uncharacterized protein 99.9 4.6E-26 1.6E-30 186.1 8.0 107 16-146 8-126 (186)
85 2jab_A H10-2-G3; HER2, darpin, 99.9 4.3E-24 1.5E-28 166.0 16.5 124 12-157 12-135 (136)
86 1d9s_A Cyclin-dependent kinase 99.9 1.2E-24 4E-29 169.2 13.2 132 193-328 3-135 (136)
87 3t8k_A Uncharacterized protein 99.9 6.5E-25 2.2E-29 179.3 9.1 152 66-256 6-175 (186)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.8E-23 6.2E-28 160.5 16.6 126 65-227 1-126 (126)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.7E-23 9.1E-28 159.5 16.7 124 14-159 2-125 (126)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 4.4E-23 1.5E-27 160.3 15.3 127 198-327 10-136 (136)
91 3c5r_A BARD-1, BRCA1-associate 99.9 9.1E-24 3.1E-28 164.5 9.3 132 56-225 1-132 (137)
92 3aaa_C Myotrophin, protein V-1 99.9 4.6E-23 1.6E-27 157.1 11.1 110 13-144 6-115 (123)
93 3c5r_A BARD-1, BRCA1-associate 99.9 4.7E-23 1.6E-27 160.5 9.5 128 197-327 5-132 (137)
94 2b0o_E UPLC1; arfgap, structur 99.9 2.5E-22 8.4E-27 177.4 12.9 122 15-158 152-282 (301)
95 3deo_A Signal recognition part 99.9 4.3E-22 1.5E-26 163.2 13.2 140 63-257 41-181 (183)
96 3deo_A Signal recognition part 99.9 5.9E-22 2E-26 162.4 12.9 140 199-366 41-181 (183)
97 3ui2_A Signal recognition part 99.9 6.9E-22 2.4E-26 169.7 13.2 139 64-257 43-182 (244)
98 3ui2_A Signal recognition part 99.9 5.5E-22 1.9E-26 170.3 12.4 139 200-366 43-182 (244)
99 3aaa_C Myotrophin, protein V-1 99.9 1.1E-21 3.9E-26 149.4 11.4 116 199-317 4-119 (123)
100 3ehr_A Osteoclast-stimulating 99.9 5.6E-22 1.9E-26 168.1 9.2 133 63-232 70-203 (222)
101 2b0o_E UPLC1; arfgap, structur 99.9 1.3E-21 4.4E-26 172.8 11.8 139 102-283 151-298 (301)
102 3ehr_A Osteoclast-stimulating 99.9 7.9E-22 2.7E-26 167.2 8.9 134 269-409 71-206 (222)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.2E-20 4.1E-25 135.7 12.6 92 65-159 1-92 (93)
104 1dcq_A PYK2-associated protein 99.8 2.3E-20 7.9E-25 162.9 15.9 128 16-159 132-262 (278)
105 3jue_A Arfgap with coiled-coil 99.8 3.1E-20 1.1E-24 167.5 15.4 122 15-158 200-324 (368)
106 3lvq_E ARF-GAP with SH3 domain 99.8 2.9E-20 9.9E-25 176.6 15.8 126 14-161 132-266 (497)
107 1dcq_A PYK2-associated protein 99.8 8E-20 2.7E-24 159.5 17.2 124 203-329 131-263 (278)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.8 6.5E-20 2.2E-24 131.8 12.3 92 14-127 2-93 (93)
109 3jue_A Arfgap with coiled-coil 99.8 6.1E-20 2.1E-24 165.5 14.0 150 99-282 196-348 (368)
110 3lvq_E ARF-GAP with SH3 domain 99.8 1.9E-19 6.4E-24 171.0 15.5 136 65-243 131-275 (497)
111 2l6b_A NR1C; ankyrin, consensu 99.8 6.5E-20 2.2E-24 137.8 9.7 107 267-413 5-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.1E-19 3.9E-24 136.5 8.1 104 13-138 8-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 2.4E-18 8.1E-23 127.7 10.7 93 59-154 17-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1.7E-16 6E-21 117.6 10.7 88 12-121 22-109 (110)
115 1gp8_A Protein (scaffolding pr 80.5 1.4 4.6E-05 23.7 2.3 21 16-36 15-35 (40)
116 3mkq_B Coatomer subunit alpha; 44.9 43 0.0015 25.9 5.5 123 14-158 8-141 (177)
117 3gvo_A Pumilio 2, pumilio homo 35.0 98 0.0034 27.1 7.1 62 62-123 69-130 (351)
118 4g26_A Pentatricopeptide repea 34.3 44 0.0015 31.1 4.9 104 116-255 91-198 (501)
119 3mkq_B Coatomer subunit alpha; 31.8 1.6E+02 0.0053 22.8 6.7 49 68-124 10-59 (177)
120 3zrh_A Ubiquitin thioesterase 27.5 2.3E+02 0.0078 25.3 7.6 62 21-87 29-90 (454)
121 3zrh_A Ubiquitin thioesterase 26.9 2.1E+02 0.0071 25.6 7.2 51 72-123 28-90 (454)
122 4g26_A Pentatricopeptide repea 21.5 92 0.0031 29.0 4.6 132 17-157 32-200 (501)
123 2ysr_A DEP domain-containing p 20.7 69 0.0024 22.2 2.7 10 81-90 72-81 (105)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-61 Score=455.86 Aligned_cols=381 Identities=34% Similarity=0.473 Sum_probs=322.4
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCC
Q psy2184 13 GKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 92 (459)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~ 92 (459)
.+.+.|+.|+..|++++|++|++. |++++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 13 ~g~t~L~~Aa~~g~~~~v~~Ll~~-------------------g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-- 71 (437)
T 1n11_A 13 SGLTPLHVASFMGHLPIVKNLLQR-------------------GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA-- 71 (437)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-------------------TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHc-------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC--
Confidence 467899999999999999999987 55666666777777777777777777777777776
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCC
Q psy2184 93 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST 172 (459)
Q Consensus 93 ~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 172 (459)
+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+... ....
T Consensus 72 -~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-------~~~~ 143 (437)
T 1n11_A 72 -KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ-------ACMT 143 (437)
T ss_dssp -CSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-------CCCC
T ss_pred -CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-------cCCC
Confidence 56666677777777777777777777777777777777777777777777777777777777654332 1112
Q ss_pred CCCCChHHHHHHcCCc------cccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcC
Q psy2184 173 LFPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTG 246 (459)
Q Consensus 173 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~ 246 (459)
....+++++++..++. ++.+.+++..+..|.||||.|+..++.+++++|++.|.+++..+..|.||||+|+..|
T Consensus 144 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 223 (437)
T 1n11_A 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223 (437)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcC
Confidence 2345677777666654 5677788889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy2184 247 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 326 (459)
Q Consensus 247 ~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~ 326 (459)
+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.
T Consensus 224 ~~~~~~~Ll~~g~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 300 (437)
T 1n11_A 224 QVEVARSLLQYGG---SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300 (437)
T ss_dssp CHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCC---CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 9999999999997 5677788999999999999999999999999999999999999999999999999999999998
Q ss_pred CCchHHHhhhhcccCCCCCChhHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCccc
Q psy2184 327 HPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRII 405 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll~~ga~~~~~ 405 (459)
+..+ ...+..|.||||+|+..|+.+++++|+++|+++|.++..| ||||+|+.+++.+++++|+++|++++.+
T Consensus 301 g~~~-------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~ 373 (437)
T 1n11_A 301 GVMV-------DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373 (437)
T ss_dssp TCCT-------TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred CccC-------CCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCC
Confidence 8765 2345678899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccCCCCHHHHHhcCCCCchhhhhhhhc
Q psy2184 406 DSKHNTVLDLLKQFPPHAVHDISTIIN 432 (459)
Q Consensus 406 ~~~g~t~l~~a~~~~~~~~~~~~~~~~ 432 (459)
|.+|.||+++|.+.+...+.+++..+.
T Consensus 374 ~~~g~t~l~~A~~~g~~~~~~~l~~~~ 400 (437)
T 1n11_A 374 SSDGTTPLAIAKRLGYISVTDVLKVVT 400 (437)
T ss_dssp CSSSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcc
Confidence 999999999999999877666665543
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-57 Score=429.80 Aligned_cols=367 Identities=31% Similarity=0.410 Sum_probs=326.7
Q ss_pred CCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy2184 55 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR 134 (459)
Q Consensus 55 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~ 134 (459)
.|++++..+..|.||||+||..|++++|++|++.|+ +++..+..+.||||+|+..|+.+++++|+++|++++.++..
T Consensus 3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~---~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~ 79 (437)
T 1n11_A 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGA---SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 79 (437)
T ss_dssp ------------CCHHHHHHHHTCHHHHHHHHHTTC---CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT
T ss_pred CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Confidence 478899999999999999999999999999999999 67888899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCc------cccCCCCccCCCCCccHHHH
Q psy2184 135 HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHH 208 (459)
Q Consensus 135 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 208 (459)
|.||||+|+..|+.+++++|++.+.... .......+++++++..++. ++.+...+..+..|.||||.
T Consensus 80 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~ 152 (437)
T 1n11_A 80 DQTPLHCAARIGHTNMVKLLLENNANPN-------LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV 152 (437)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHTCCTT-------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHhCCCCCC-------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHH
Confidence 9999999999999999999999876531 2334567899999998875 67888888889999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHH
Q psy2184 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 288 (459)
Q Consensus 209 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~ 288 (459)
|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++++. +++..+..|.||||+|+..++.++++
T Consensus 153 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG---SPHSPAWNGYTPLHIAAKQNQVEVAR 229 (437)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC---CSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC---CCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999997 56667788999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCChhHHHHhcCcHHHHHHHHHcCC
Q psy2184 289 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGL 368 (459)
Q Consensus 289 ~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~ 368 (459)
+|+++|++++..+..|.|||++|+..|+.+++++|++.+... ...+..|.||||+|+..|+.+++++|+++|+
T Consensus 230 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 302 (437)
T 1n11_A 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-------NLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302 (437)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-------TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999987764 2345567899999999999999999999999
Q ss_pred CCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCCHHHHHhcCCCCchhhhhhhhcCccchhhhhhcCCCC
Q psy2184 369 DVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQFPPHAVHDISTIINPVMSYEFLVSGGGTR 447 (459)
Q Consensus 369 ~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (459)
+++..+..| ||||+|+.+++.+++++|+++|++++.+|..|.||||+|...+.. ...++|+..|+..
T Consensus 303 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~------------~iv~~Ll~~ga~~ 370 (437)
T 1n11_A 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT------------DIVTLLLKNGASP 370 (437)
T ss_dssp CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH------------HHHHHHHHTTCCS
T ss_pred cCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChH------------HHHHHHHHCcCCC
Confidence 999999999 999999999999999999999999999999999999999998764 3667888888887
Q ss_pred CCCCcc
Q psy2184 448 SVSDTD 453 (459)
Q Consensus 448 ~~~~~~ 453 (459)
..++..
T Consensus 371 ~~~~~~ 376 (437)
T 1n11_A 371 NEVSSD 376 (437)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 776554
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=5.9e-47 Score=344.08 Aligned_cols=291 Identities=27% Similarity=0.342 Sum_probs=259.2
Q ss_pred CCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCC-CCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy2184 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTK-DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 142 (459)
Q Consensus 64 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a 142 (459)
..|.|+||.|++.|++++|++|++.|+ +++.++. .|.||||+|+..|+.+++++|+++|++++..+..+.++++.+
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Ga---dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGA---NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTC---CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCC---CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence 357899999999999999999999999 6777765 589999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHH
Q psy2184 143 AQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222 (459)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll 222 (459)
+..+...++..++.. +.+++..+..|.||++.|+..|+.+++++|+
T Consensus 100 ~~~~~~~~~~~~~~~----------------------------------~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll 145 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSK----------------------------------GADVNECDFYGFTAFMEAAVYGKVKALKFLY 145 (337)
T ss_dssp HHHTCHHHHHHHHTT----------------------------------TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHH
T ss_pred HhcccchhhHHhhhc----------------------------------cchhhhhccCCCCHHHHHHHcCcHHHHHHHH
Confidence 999999999998764 4456788999999999999999999999999
Q ss_pred hCCCCCccc----------CCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCcccccCCCCCHhhHHHHcCC----HHHH
Q psy2184 223 TNEASTNIV----------DTKGSSPLHLAAWTGNVDIVRVLLC-HGPSVPNVNLMTKDNETALHCAAQYGH----TPVV 287 (459)
Q Consensus 223 ~~~~~~~~~----------~~~~~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~g~t~L~~a~~~~~----~~~~ 287 (459)
+.|++++.. +..|.||||+|+..|+.+++++|++ .|+ +++..+..|.|+++.++..+. ..++
T Consensus 146 ~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~ga---d~n~~d~~g~t~l~~~~~~~~~~~~~~i~ 222 (337)
T 4g8k_A 146 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA---DVNACDNMGRNALIHALLSSDDSDVEAIT 222 (337)
T ss_dssp HTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCC---CTTCCCTTSCCHHHHHHHHSCTTTHHHHH
T ss_pred HcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCC---CcCccCCCCCcHHHHHHHHcCcccHHHHH
Confidence 999987654 4468899999999999999999996 466 678889999999998876554 4588
Q ss_pred HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcC-CchHHHhhhhcccCCCCCChhHHHHhcCcHHHHHHHHHc
Q psy2184 288 SQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH-PGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQA 366 (459)
Q Consensus 288 ~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~ 366 (459)
++|+++|++++.++..|.||||+|+..++.++++.|++.. ..+ +..+..|.||||+|+..|+.+++++|+++
T Consensus 223 ~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v-------n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 295 (337)
T 4g8k_A 223 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-------NDTDSDGKTALLLAVELKLKKIAELLCKR 295 (337)
T ss_dssp HHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT-------TCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc-------cCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 9999999999999999999999999999999999999864 332 23455788999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCccc
Q psy2184 367 GLDVNIRTASGTALHEAALCGKLEVVKTLLEHGADLRII 405 (459)
Q Consensus 367 g~~~~~~~~~~t~L~~A~~~~~~~i~~~Ll~~ga~~~~~ 405 (459)
|+++|.. +|||+|+..++.+++++||++||++|..
T Consensus 296 GAd~n~~----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 296 GASTDCG----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp SCSSTTC----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred CCCCCCC----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 9999754 5999999999999999999999999864
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.5e-46 Score=339.94 Aligned_cols=300 Identities=27% Similarity=0.320 Sum_probs=263.8
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCC-CCCchHHHHHhcCCHHHHHHHHhcCCCC
Q psy2184 14 KDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDT-KGSSPLHLAAWTGNVDIVRVLLCHGPSV 92 (459)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~ 92 (459)
+++.|+.|+++||+++|++|++. |+++|.++. .|.||||+||..|+.++|++|+++|+
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~-------------------Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga-- 83 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEG-------------------GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-- 83 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-------------------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--
T ss_pred CChHHHHHHHcCCHHHHHHHHHC-------------------CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCC--
Confidence 46789999999999999999987 788888875 49999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCC
Q psy2184 93 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST 172 (459)
Q Consensus 93 ~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 172 (459)
+++..+..+.++++.++..+...++..+++.+++++..+..|.||+|+|+..++.++++++++.+......
T Consensus 84 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~-------- 154 (337)
T 4g8k_A 84 -DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR-------- 154 (337)
T ss_dssp -CTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC--------
T ss_pred -chhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchh--------
Confidence 78888999999999999999999999999999999999999999999999999999999999876553100
Q ss_pred CCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHh-CCCCCcccCCCCCcHHHHHHHcCC----
Q psy2184 173 LFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLT-NEASTNIVDTKGSSPLHLAAWTGN---- 247 (459)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~L~~a~~~~~---- 247 (459)
..........+..|.||||.|+..|+.+++++|++ .|++++..+..|.|+++.++..+.
T Consensus 155 ----------------~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~ 218 (337)
T 4g8k_A 155 ----------------RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 218 (337)
T ss_dssp ----------------CCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTH
T ss_pred ----------------hccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccH
Confidence 11222344567789999999999999999999996 699999999999999998876544
Q ss_pred HHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy2184 248 VDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 326 (459)
Q Consensus 248 ~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~ 326 (459)
..++++|+++|+ +++..+..|.||||+|+..++.+++++|++. |++++.++..|.||||+|+..|+.+++++|++.
T Consensus 219 ~~i~~lLl~~ga---d~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 295 (337)
T 4g8k_A 219 EAITHLLLDHGA---DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 295 (337)
T ss_dssp HHHHHHHHHTTC---CTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 468899999998 6788899999999999999999999999986 899999999999999999999999999999999
Q ss_pred CCchHHHhhhhcccCCCCCChhHHHHhcCcHHHHHHHHHcCCCCCCCC
Q psy2184 327 HPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT 374 (459)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~ 374 (459)
+.++ ...+||++|+..++.+++++|+++|+++|...
T Consensus 296 GAd~------------n~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~~~ 331 (337)
T 4g8k_A 296 GAST------------DCGDLVMTARRNYDHSLVKVLLSHGAKEDFHP 331 (337)
T ss_dssp SCSS------------TTCCHHHHHHHTTCHHHHHHHHHTTCCC----
T ss_pred CCCC------------CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCC
Confidence 8765 23579999999999999999999999998653
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-44 Score=321.60 Aligned_cols=263 Identities=30% Similarity=0.399 Sum_probs=212.8
Q ss_pred CCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCC-CCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2184 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLM-TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAA 143 (459)
Q Consensus 65 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~ 143 (459)
.|.|+||.|++.|+++++++|++.|+ +++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGA---NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCC---CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 46799999999999999999999998 56655 778999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHh
Q psy2184 144 QYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLT 223 (459)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~ 223 (459)
..|+.+++++|++. +.+++..+..|.||||.|+..|+.+++++|++
T Consensus 81 ~~~~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 126 (285)
T 1wdy_A 81 IAGSVKLLKLFLSK----------------------------------GADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126 (285)
T ss_dssp HHTCHHHHHHHHHT----------------------------------TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc----------------------------------CCCCCccCcccCCHHHHHHHhCCHHHHHHHHH
Confidence 99999999999775 34456677888999999999999999999999
Q ss_pred CCCCCccc----------CCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCcccccCCCCCHhhHHHHcCC----HHHHH
Q psy2184 224 NEASTNIV----------DTKGSSPLHLAAWTGNVDIVRVLLCH-GPSVPNVNLMTKDNETALHCAAQYGH----TPVVS 288 (459)
Q Consensus 224 ~~~~~~~~----------~~~~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~g~t~L~~a~~~~~----~~~~~ 288 (459)
.|++++.. +..|.||||+|+..|+.+++++|++. +. +++..+..|.||||+|+..++ .++++
T Consensus 127 ~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~ 203 (285)
T 1wdy_A 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA---DVNACDNMGRNALIHALLSSDDSDVEAITH 203 (285)
T ss_dssp TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC---CTTCCCTTSCCHHHHHHHCSCTTTHHHHHH
T ss_pred hCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCC---CCCccCCCCCCHHHHHHHccccchHHHHHH
Confidence 98888776 55566677777777777777766665 44 455556666666666666666 66666
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCChhHHHHhcCcHHHHHHHHH-cC
Q psy2184 289 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ-AG 367 (459)
Q Consensus 289 ~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~-~g 367 (459)
+|+++|++++.++..|. ||||+|+..|+.+++++|++ .|
T Consensus 204 ~Ll~~g~~~~~~~~~g~----------------------------------------t~L~~A~~~~~~~~v~~Ll~~~g 243 (285)
T 1wdy_A 204 LLLDHGADVNVRGERGK----------------------------------------TPLILAVEKKHLGLVQRLLEQEH 243 (285)
T ss_dssp HHHHTTCCSSCCCTTSC----------------------------------------CHHHHHHHTTCHHHHHHHHHSSS
T ss_pred HHHHcCCCCCCcCCCCC----------------------------------------cHHHHHHHcCCHHHHHHHHhccC
Confidence 66666666666555554 55566666666777777777 78
Q ss_pred CCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCccccc
Q psy2184 368 LDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDS 407 (459)
Q Consensus 368 ~~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll~~ga~~~~~~~ 407 (459)
++++.++..| ||||+|+..++.+++++|+++|++++.+|.
T Consensus 244 ~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 244 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred CCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence 8999998888 999999999999999999999999998873
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=8.9e-45 Score=332.34 Aligned_cols=293 Identities=31% Similarity=0.377 Sum_probs=209.9
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCC
Q psy2184 14 KDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP 93 (459)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 93 (459)
+.+.|+.|++.|+.+.|+++++.. +.+++..|..|.||||+|+..|+.+++++|++.|+
T Consensus 24 ~~~~L~~A~~~g~~~~v~~ll~~~------------------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~--- 82 (351)
T 3utm_A 24 KKDELLEAARSGNEEKLMALLTPL------------------NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA--- 82 (351)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTT------------------TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTC---
T ss_pred cchhHHHHHHcCCHHHHHHHHHhc------------------CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---
Confidence 446788888888888888888753 66777788888888888888888888888888888
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCC
Q psy2184 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTL 173 (459)
Q Consensus 94 ~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 173 (459)
+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.
T Consensus 83 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------------- 146 (351)
T 3utm_A 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH---------------- 146 (351)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----------------
T ss_pred CCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----------------
Confidence 6777778888888888888888888888888888888888888888888888888888888764
Q ss_pred CCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q psy2184 174 FPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRV 253 (459)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ 253 (459)
+.+++..+..|.++++.++..+..+.+++... .+++..++..+..+.++.
T Consensus 147 ------------------g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 196 (351)
T 3utm_A 147 ------------------GADPTLVNCHGKSAVDMAPTPELRERLTYEFK------------GHSLLQAAREADLAKVKK 196 (351)
T ss_dssp ------------------TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHH------------HHHHHHHHHTTCHHHHHH
T ss_pred ------------------CCCCccccCCCCcchHHHhhhhhHHHHHhhhc------------ccHHHHHHHhccHHHHHH
Confidence 33456667778888888777776776666553 235667777777777777
Q ss_pred HHhCCCCCCCcccccCCCCCHhhHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch
Q psy2184 254 LLCHGPSVPNVNLMTKDNETALHCAAQY---GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 330 (459)
Q Consensus 254 Ll~~~~~~~~~~~~~~~g~t~L~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~ 330 (459)
++.... .....+..|.||||+|+.. +..+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus 197 ~l~~~~---~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~------------ 261 (351)
T 3utm_A 197 TLALEI---INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND------------ 261 (351)
T ss_dssp HTTTCC---TTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH------------
T ss_pred HHHhhc---ccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHH------------
Confidence 776654 2233456677888888877 4467888888888887777776666655555555544
Q ss_pred HHHhhhhcccCCCCCChhHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCcccccCC
Q psy2184 331 IQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKH 409 (459)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll~~ga~~~~~~~~g 409 (459)
++++|+++|++++.++..| ||||+|+..++.+++++|+++|++++.+|.+|
T Consensus 262 ----------------------------~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g 313 (351)
T 3utm_A 262 ----------------------------VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG 313 (351)
T ss_dssp ----------------------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred ----------------------------HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCC
Confidence 5555555555555555555 66666666666666666666666666666666
Q ss_pred CCHHHHH
Q psy2184 410 NTVLDLL 416 (459)
Q Consensus 410 ~t~l~~a 416 (459)
.||+++|
T Consensus 314 ~tal~~a 320 (351)
T 3utm_A 314 FTAAQMG 320 (351)
T ss_dssp CCHHHHS
T ss_pred CChhhhh
Confidence 6666655
No 7
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.1e-45 Score=338.43 Aligned_cols=276 Identities=25% Similarity=0.293 Sum_probs=226.3
Q ss_pred cCCCCCCchHHHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy2184 61 IVDTKGSSPLHLAAWTGNVDIVRVLLCH-GPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 139 (459)
Q Consensus 61 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l 139 (459)
..+..+.++||.|++.|+.+.++.|+.. +. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 19 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L 95 (351)
T 3utm_A 19 LTGEYKKDELLEAARSGNEEKLMALLTPLNV---NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPL 95 (351)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHCCTTTT---TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred eeccccchhHHHHHHcCCHHHHHHHHHhcCC---CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 3456678999999999999999999876 45 6778889999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHH
Q psy2184 140 DLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVE 219 (459)
Q Consensus 140 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 219 (459)
|+|+..|+.+++++|++. +.+++..+..|.||||.|+..|+.++++
T Consensus 96 ~~A~~~g~~~iv~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 141 (351)
T 3utm_A 96 HNACSYGHYEVTELLLKH----------------------------------GACVNAMDLWQFTPLHEAASKNRVEVCS 141 (351)
T ss_dssp HHHHHTTCHHHHHHHHHT----------------------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHC----------------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999765 3445667778888888888888888888
Q ss_pred HHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCCC
Q psy2184 220 LLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTI 299 (459)
Q Consensus 220 ~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~ 299 (459)
+|+++|++++..+..+.+|+++++..+..+.+++... ..++..++..+..+.+..++..+.....
T Consensus 142 ~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (351)
T 3utm_A 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK---------------GHSLLQAAREADLAKVKKTLALEIINFK 206 (351)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHH---------------HHHHHHHHHTTCHHHHHHHTTTCCTTCC
T ss_pred HHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhc---------------ccHHHHHHHhccHHHHHHHHHhhccccc
Confidence 8888888888888888888888877777766666542 2355666667777777666665443333
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCChhHHHHhc---CcHHHHHHHHHcCCCCCCCCCC
Q psy2184 300 RNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN---GHRSVVARLLQAGLDVNIRTAS 376 (459)
Q Consensus 300 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~ 376 (459)
.+..| .||||+|+.. +..+++++|+++|++++.++..
T Consensus 207 ~~~~~----------------------------------------~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~ 246 (351)
T 3utm_A 207 QPQSH----------------------------------------ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD 246 (351)
T ss_dssp CTTTC----------------------------------------CCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTT
T ss_pred CCCCC----------------------------------------CCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCC
Confidence 33333 4566666665 5578999999999999999999
Q ss_pred C-CHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCCHHHHHhcCCCCchhhhh
Q psy2184 377 G-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQFPPHAVHDIS 428 (459)
Q Consensus 377 ~-t~L~~A~~~~~~~i~~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 428 (459)
| ||||+|+..++.+++++|+++|++++.+|..|.||||+|...+.....+.+
T Consensus 247 g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~L 299 (351)
T 3utm_A 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299 (351)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 9 999999999999999999999999999999999999999999876544433
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.3e-43 Score=310.38 Aligned_cols=268 Identities=27% Similarity=0.339 Sum_probs=231.7
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcC-CCCCCchHHHHHhcCCHHHHHHHHhcCCC
Q psy2184 13 GKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIV-DTKGSSPLHLAAWTGNVDIVRVLLCHGPS 91 (459)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~ 91 (459)
.+.+.|+.|++.|++++|++|++. |++++.. +..|.||||+|+..|+.+++++|++.|+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~-------------------g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~- 63 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEG-------------------GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA- 63 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT-------------------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred ccchHHHHHHHcCCHHHHHHHHHc-------------------CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-
Confidence 356789999999999999999987 5667766 7789999999999999999999999999
Q ss_pred CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccC
Q psy2184 92 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQS 171 (459)
Q Consensus 92 ~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 171 (459)
+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.......
T Consensus 64 --~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~------ 135 (285)
T 1wdy_A 64 --DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR------ 135 (285)
T ss_dssp --CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC------
T ss_pred --CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCccccc------
Confidence 678889999999999999999999999999999999999999999999999999999999998754431000
Q ss_pred CCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCcHHHHHHHcCC---
Q psy2184 172 TLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTN-EASTNIVDTKGSSPLHLAAWTGN--- 247 (459)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~L~~a~~~~~--- 247 (459)
.........+..|.||||.|+..|+.+++++|++. |++++..+..|.||||+|+..++
T Consensus 136 ------------------~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 197 (285)
T 1wdy_A 136 ------------------KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 197 (285)
T ss_dssp ------------------CCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTT
T ss_pred ------------------ccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccch
Confidence 00000111267899999999999999999999997 99999999999999999999999
Q ss_pred -HHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy2184 248 -VDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325 (459)
Q Consensus 248 -~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~ 325 (459)
.+++++|+++|. +++..+..|.||||+|+..++.+++++|++ .|++++.++..|.|||++|+..++.+++++|++
T Consensus 198 ~~~i~~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~ 274 (285)
T 1wdy_A 198 VEAITHLLLDHGA---DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274 (285)
T ss_dssp HHHHHHHHHHTTC---CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHH
Confidence 999999999998 677888999999999999999999999999 899999998888877777776666665555555
Q ss_pred cCCc
Q psy2184 326 THPG 329 (459)
Q Consensus 326 ~~~~ 329 (459)
++.+
T Consensus 275 ~Ga~ 278 (285)
T 1wdy_A 275 RGAS 278 (285)
T ss_dssp HSSC
T ss_pred cCCC
Confidence 5443
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.7e-43 Score=323.44 Aligned_cols=321 Identities=20% Similarity=0.218 Sum_probs=206.3
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCC
Q psy2184 14 KDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP 93 (459)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 93 (459)
....|..|+..|+.+.++.+++...... .-.+++..+...|+++++++++...
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~---- 89 (373)
T 2fo1_E 37 SQHSLLEASYDGYIKRQRNELQHYSLYP-----------------------NPQGYGNGNDFLGDFNHTNLQIPTE---- 89 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCCccccchhhhhhhhcccc-----------------------CccccCCCCCccccccccccccccC----
Confidence 4457888889999999998888753211 1123566688889999999887543
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCC
Q psy2184 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN-SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST 172 (459)
Q Consensus 94 ~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 172 (459)
.+..|.||||+|+..+. +++++|+. .+++..+ ..|.||||+|+..|+.+++++|+......
T Consensus 90 ----~~~~g~t~L~~Aa~~~~-~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~----------- 151 (373)
T 2fo1_E 90 ----PEPESPIKLHTEAAGSY-AITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE----------- 151 (373)
T ss_dssp --------CCCHHHHHHHSSS-CCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHH-----------
T ss_pred ----CCCCCccHHHHHhcCCc-hHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHH-----------
Confidence 37889999999999654 78888865 4677777 78999999999999999998887431100
Q ss_pred CCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q psy2184 173 LFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252 (459)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~ 252 (459)
++..+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++++
T Consensus 152 ---------------ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~ 216 (373)
T 2fo1_E 152 ---------------CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMV 216 (373)
T ss_dssp ---------------HHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred ---------------HHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHH
Confidence 03456777888889999999999999999999999999999998889999999999999999999
Q ss_pred HHHhCCCCCCCcccccCCCCCHhhHHHHcC---CHHHHHHHHhCCCCCCC--------CCCCCCcHHHHHHHcCCHHHHH
Q psy2184 253 VLLCHGPSVPNVNLMTKDNETALHCAAQYG---HTPVVSQLLEHSCDPTI--------RNSRHETALDLAAQYGRLETVD 321 (459)
Q Consensus 253 ~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~---~~~~~~~Ll~~g~~~~~--------~~~~~~~~l~~a~~~~~~~~~~ 321 (459)
+|++.+....+++..+..|.||||+|+..+ +.+++++|+++|++++. .+..|.||||+|+..|+.++++
T Consensus 217 ~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~ 296 (373)
T 2fo1_E 217 YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVK 296 (373)
T ss_dssp HHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHH
T ss_pred HHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHH
Confidence 999876211256777888999999999887 78899999999988875 4557777777777777777777
Q ss_pred HHHhcC-CchHHHhhhhcccCCCCCChhHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCC
Q psy2184 322 TLVRTH-PGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHG 399 (459)
Q Consensus 322 ~Ll~~~-~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll~~g 399 (459)
+|++.+ ..+ +..+..|.||||+|+..|+.+++++|+++|++++.++..| |||++|+.+++.+++++|+++|
T Consensus 297 ~Ll~~~~~~~-------n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 297 YLVGEKGSNK-------DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp HHHHHSCCCT-------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHhcCCCc-------cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 777665 322 2234456677777777777777777777777777777777 7777777777777777777777
Q ss_pred CC
Q psy2184 400 AD 401 (459)
Q Consensus 400 a~ 401 (459)
++
T Consensus 370 a~ 371 (373)
T 2fo1_E 370 PE 371 (373)
T ss_dssp --
T ss_pred cc
Confidence 65
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.7e-42 Score=302.28 Aligned_cols=262 Identities=24% Similarity=0.278 Sum_probs=147.9
Q ss_pred CCCCCCchHHHHHhcCCHHHHHHHHhcCCC--------CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q psy2184 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPS--------VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS 133 (459)
Q Consensus 62 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~ 133 (459)
....|.|+||+|+..|+.+.+..++..++. ...++..+..|.||||+|+..|+.+++++|++.|++++.++.
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~ 90 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA 90 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 346789999999999998888777665533 124566788899999999999999999999999999888888
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcC
Q psy2184 134 RHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNG 213 (459)
Q Consensus 134 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~ 213 (459)
.|.||||+|+..|+.+++++|++. +.+++..+..|.||||.|+..|
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~----------------------------------ga~~~~~~~~g~t~L~~A~~~~ 136 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKH----------------------------------GAQVNGVTADWHTPLFNACVSG 136 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHT----------------------------------TCCSSCCCTTCCCHHHHHHHHT
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHC----------------------------------CCCCCCCCCCCCCHHHHHHHcC
Confidence 888888887777777777777653 2334455555666666666666
Q ss_pred CHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhC
Q psy2184 214 HKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 293 (459)
Q Consensus 214 ~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~ 293 (459)
+.+++++|++.|++++..+ .|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+..++.+++++|+++
T Consensus 137 ~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 212 (285)
T 3d9h_A 137 SWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGG---NIDHKISHLGTPLYLACENQQRACVKKLLES 212 (285)
T ss_dssp CHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTC---CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence 6666666666555554322 24555555555555555555555544 3344444444555555555555555555544
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCChhHHHHhcCcHHHHHHHHHcCCCCCCC
Q psy2184 294 SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIR 373 (459)
Q Consensus 294 g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~ 373 (459)
|++++. + ..|.||||+|+..++.+++++|+++|++++.+
T Consensus 213 ga~~~~-~----------------------------------------~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~ 251 (285)
T 3d9h_A 213 GADVNQ-G----------------------------------------KGQDSPLHAVVRTASEELACLLMDFGADTQAK 251 (285)
T ss_dssp TCCTTC-C----------------------------------------BTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCC-C----------------------------------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence 444431 2 23456677777777777788888888888888
Q ss_pred CCCC-CHHHHHHHcCCHHHHHHHHHC-CCCCcc
Q psy2184 374 TASG-TALHEAALCGKLEVVKTLLEH-GADLRI 404 (459)
Q Consensus 374 ~~~~-t~L~~A~~~~~~~i~~~Ll~~-ga~~~~ 404 (459)
+..| |||++|+ ++.+++++|+++ |+++..
T Consensus 252 d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 252 NAEGKRPVELVP--PESPLAQLFLEREGASLPK 282 (285)
T ss_dssp CTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred CCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence 8877 8888888 456788888876 776643
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.9e-41 Score=298.14 Aligned_cols=264 Identities=22% Similarity=0.237 Sum_probs=208.4
Q ss_pred ccCCCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCC
Q psy2184 11 VMGKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGP 90 (459)
Q Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~ 90 (459)
...+.+.||.|+..|+.+.+..++..++...... .++. ..++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~------~l~~--~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~ 83 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI------RLLS--NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW 83 (285)
T ss_dssp ------------------------------CCSE------ECCC--CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccch------hhhh--CcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 3457889999999999999988877764421110 0011 1245678999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhcc
Q psy2184 91 SVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQ 170 (459)
Q Consensus 91 ~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 170 (459)
+++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+..
T Consensus 84 ---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------- 150 (285)
T 3d9h_A 84 ---AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS---------- 150 (285)
T ss_dssp ---CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----------
T ss_pred ---CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC----------
Confidence 7888899999999999999999999999999999999999999999999999999999999886433
Q ss_pred CCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy2184 171 STLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDI 250 (459)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~ 250 (459)
++. +..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++
T Consensus 151 ------------------------~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~ 205 (285)
T 3d9h_A 151 ------------------------VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC 205 (285)
T ss_dssp ------------------------SSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHH
T ss_pred ------------------------CCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 232 2348999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy2184 251 VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 326 (459)
Q Consensus 251 ~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~ 326 (459)
+++|++.+++ ++ .+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+ ++.+++++|++.
T Consensus 206 v~~Ll~~ga~---~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 206 VKKLLESGAD---VN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLER 275 (285)
T ss_dssp HHHHHHTTCC---TT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred HHHHHHCCCC---CC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence 9999999985 44 3788999999999999999999999999999999999999999998 456888888887
No 12
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.1e-41 Score=293.20 Aligned_cols=234 Identities=29% Similarity=0.370 Sum_probs=183.4
Q ss_pred CCCcCCCCCCchHHHHHhcC-------------CHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHC
Q psy2184 58 STNIVDTKGSSPLHLAAWTG-------------NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 124 (459)
Q Consensus 58 ~~~~~~~~~~t~L~~A~~~g-------------~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~ 124 (459)
++|.+|..|.||||+|+..| +.+++++|++.|++. .+..+..|.||||+|+..|+.+++++|++.
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 79 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL--HNQTDRTGETALHLAARYSRSDAAKRLLEA 79 (253)
T ss_dssp ----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc--ccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 57889999999999999987 899999999999942 244588999999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCcc
Q psy2184 125 SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYS 204 (459)
Q Consensus 125 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (459)
|++++..+..|.||||+|+..++.+++++|++.+. .+++..+..|.|
T Consensus 80 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~---------------------------------~~~~~~~~~g~t 126 (253)
T 1yyh_A 80 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA---------------------------------TDLDARMHDGTT 126 (253)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT---------------------------------SCTTCCCTTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---------------------------------CCccccCCCCCc
Confidence 99999999999999999999999999999988643 245677889999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCH
Q psy2184 205 ALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHT 284 (459)
Q Consensus 205 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~ 284 (459)
|||.|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+..|+.
T Consensus 127 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~tpL~~A~~~~~~ 203 (253)
T 1yyh_A 127 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA---NKDMQNNREETPLFLAAREGSY 203 (253)
T ss_dssp HHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999999998 6778889999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCc
Q psy2184 285 PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 329 (459)
Q Consensus 285 ~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~ 329 (459)
+++++|+++|++++.++..|.||+++|+.+|+.+++++|....+.
T Consensus 204 ~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 204 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred HHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999987554
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3e-42 Score=316.50 Aligned_cols=292 Identities=20% Similarity=0.211 Sum_probs=238.4
Q ss_pred CCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy2184 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 135 (459)
Q Consensus 56 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~ 135 (459)
+.+++..|..|.||||+||..|+.++|++|++.|+ +++..+..|.||||+|+..|+.+++++|+++|++++. ..|
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g 84 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGV---SPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHG 84 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTT
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCC
Confidence 34566778899999999999999999999999999 7888999999999999999999999999999996654 578
Q ss_pred CcHHHHHHHcCCHHHHHHHHhc----CCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHH
Q psy2184 136 ETALDLAAQYGRLETVDTLVRT----HPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAAL 211 (459)
Q Consensus 136 ~t~l~~a~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 211 (459)
.||||+|+..|+.+++++|++. +.......... ..........+..+..|.||||+|+.
T Consensus 85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~g~t~L~~A~~ 147 (364)
T 3ljn_A 85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNEC-----------------DEREVNEIGSHVKHCKGQTALHWCVG 147 (364)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCC-----------------CCCCEEEETTEEEEESCCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhc-----------------chHhhhhhccccCCCCCCCHHHHHHH
Confidence 9999999999999999999987 33332211100 00011122345577889999999999
Q ss_pred cC--CHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC--CCcccccCCCCCHhhHHHHcCCHHHH
Q psy2184 212 NG--HKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV--PNVNLMTKDNETALHCAAQYGHTPVV 287 (459)
Q Consensus 212 ~~--~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~~~g~t~L~~a~~~~~~~~~ 287 (459)
.| +.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++++. .+++..+..|.||||+|+..|+.+++
T Consensus 148 ~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v 227 (364)
T 3ljn_A 148 LGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227 (364)
T ss_dssp SCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHH
T ss_pred cCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHH
Confidence 99 999999999999999999999999999999999999999999998741 12788889999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhh-----hcccCCCCCChhHHHHhcCcHHHHHH
Q psy2184 288 SQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNA-----RAQSTLFPASPLHLASRNGHRSVVAR 362 (459)
Q Consensus 288 ~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-----~~~~~~~~~~~l~~A~~~~~~~~~~~ 362 (459)
++|+++|++++.++..|.|||++|+..|+.+++++|++.+......... .......+.+++++|+..+..+.+..
T Consensus 228 ~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ 307 (364)
T 3ljn_A 228 MRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ 307 (364)
T ss_dssp HHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHH
Confidence 9999999999999999999999999999999999999998765332211 11123455677777777777777777
Q ss_pred HHHcCCC
Q psy2184 363 LLQAGLD 369 (459)
Q Consensus 363 Ll~~g~~ 369 (459)
|+..+++
T Consensus 308 ll~~~~~ 314 (364)
T 3ljn_A 308 LLQEKLD 314 (364)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=289.17 Aligned_cols=256 Identities=23% Similarity=0.257 Sum_probs=217.2
Q ss_pred CCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy2184 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 144 (459)
Q Consensus 65 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~ 144 (459)
.|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGW---AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTC---CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 58899999999999999999999999 788899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhC
Q psy2184 145 YGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTN 224 (459)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~ 224 (459)
.|+.+++++|++.+.. ++ .+..|.||||.|+..|+.+++++|++.
T Consensus 79 ~~~~~~v~~Ll~~g~~----------------------------------~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (261)
T 2xai_A 79 SGSWDCVNLLLQHGAS----------------------------------VQ-PESDLASPIHEAARRGHVECVNSLIAY 123 (261)
T ss_dssp HTCHHHHHHHHHTTCC----------------------------------SS-CSCTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHCCCC----------------------------------CC-CCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 9999999999986543 22 234589999999999999999999999
Q ss_pred CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q psy2184 225 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 304 (459)
Q Consensus 225 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~ 304 (459)
|++++..+..|.||||+|+..|+.+++++|++.|++ ++. +..|.||||+|+..++.+++++|+++|++++.++..|
T Consensus 124 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g 199 (261)
T 2xai_A 124 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD---VNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEG 199 (261)
T ss_dssp TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCC---TTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred CCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCC---CCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 999999999999999999999999999999999985 443 7889999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCchHH-HhhhhcccCCCCCChhHHHHhcCcHHHHHHHH
Q psy2184 305 ETALDLAAQYGRLETVDTLVRTHPGLIQ-AYNARAQSTLFPASPLHLASRNGHRSVVARLL 364 (459)
Q Consensus 305 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll 364 (459)
.||+++|+.++ ++++.|++.+..... ........+..|.|+++.|.+....+.++-++
T Consensus 200 ~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 200 KRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258 (261)
T ss_dssp CCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHH
T ss_pred CChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHH
Confidence 99999999665 488899887543211 11111122345566666666655555544443
No 15
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-41 Score=309.74 Aligned_cols=281 Identities=22% Similarity=0.266 Sum_probs=132.9
Q ss_pred HHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q psy2184 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNL 97 (459)
Q Consensus 18 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 97 (459)
+..+...|+++++++++... .+..|.||||.|+..+ .+++++|+....+ .
T Consensus 70 ~~~~~~~g~~~~~~~~~~~~------------------------~~~~g~t~L~~Aa~~~-~~~~~~L~~~~~n-----~ 119 (373)
T 2fo1_E 70 GNGNDFLGDFNHTNLQIPTE------------------------PEPESPIKLHTEAAGS-YAITEPITRESVN-----I 119 (373)
T ss_dssp ------------------------------------------------CCCHHHHHHHSS-SCCCSCCSTTTTT-----T
T ss_pred CCCCCccccccccccccccC------------------------CCCCCccHHHHHhcCC-chHHHHhcccccc-----c
Confidence 45566777777777766543 2344555555555533 2455555555542 1
Q ss_pred CC-CCCccHHHHHHHcCCHHHHHHHH--------HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhh
Q psy2184 98 MT-KDNETALHCAAQYGHTPVVSQLL--------EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 168 (459)
Q Consensus 98 ~~-~~~~t~L~~A~~~~~~~iv~~Ll--------~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~ 168 (459)
.+ ..|.||||+|+..|+.+++++|+ +.|++++..|..|.||||+|+..|+.+++++|++.
T Consensus 120 ~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~----------- 188 (373)
T 2fo1_E 120 IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA----------- 188 (373)
T ss_dssp CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-----------
T ss_pred cCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHC-----------
Confidence 22 34555555555555554444443 45555555555555555555555555555555443
Q ss_pred ccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCC---CCCcccCCCCCcHHHHHHHc
Q psy2184 169 AQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNE---ASTNIVDTKGSSPLHLAAWT 245 (459)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~~t~L~~a~~~ 245 (459)
+.+++..+..|.||||.|+..|+.+++++|++.+ .+++..+..|.||||+|+..
T Consensus 189 -----------------------ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~ 245 (373)
T 2fo1_E 189 -----------------------GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 245 (373)
T ss_dssp -----------------------TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS
T ss_pred -----------------------CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHh
Confidence 2233444555555555555555555555555554 45555555555555555555
Q ss_pred C---CHHHHHHHHhCCCCCCC-----cccccCCCCCHhhHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCC
Q psy2184 246 G---NVDIVRVLLCHGPSVPN-----VNLMTKDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGR 316 (459)
Q Consensus 246 ~---~~~~~~~Ll~~~~~~~~-----~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~l~~a~~~~~ 316 (459)
+ +.+++++|++.++++.. .+..+..|.||||+|+..|+.+++++|++++ ++++.++..|.||||+|+..|+
T Consensus 246 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~ 325 (373)
T 2fo1_E 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 325 (373)
T ss_dssp CSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC
Confidence 4 45555555555543211 1113345555555555555555555555543 5555555555555555555555
Q ss_pred HHHHHHHHhcCCchHHHhhhhcccCCCCCChhHHHHhcCcHHHHHHHHHcCCC
Q psy2184 317 LETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLD 369 (459)
Q Consensus 317 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~ 369 (459)
.+++++|++.+.++ ...+..|.|||++|+..|+.+++++|+++|++
T Consensus 326 ~~iv~~Ll~~gad~-------~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 326 IEVVMYLIQQGASV-------EAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHHHHTTCCS-------SCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHHHHHHHHcCCCc-------cCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 55555555554443 12233445555555555555555555555543
No 16
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.1e-39 Score=280.93 Aligned_cols=230 Identities=29% Similarity=0.395 Sum_probs=215.1
Q ss_pred CCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q psy2184 57 ASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136 (459)
Q Consensus 57 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~ 136 (459)
.+++..+..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+..|+.+++++|++.|++++..+..|.
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 78 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA---NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS 78 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSC
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCC---CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC
Confidence 4677889999999999999999999999999999 7788889999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHH
Q psy2184 137 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKE 216 (459)
Q Consensus 137 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 216 (459)
||||+|+..++.+++++|++.++ .+++..+..|.||||.|+..++.+
T Consensus 79 t~L~~A~~~~~~~~~~~Ll~~~~---------------------------------~~~~~~~~~g~t~L~~A~~~~~~~ 125 (237)
T 3b7b_A 79 TCLHLAAKKGHYEVVQYLLSNGQ---------------------------------MDVNCQDDGGWTPMIWATEYKHVD 125 (237)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTC---------------------------------CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred cHHHHHHHcCCHHHHHHHHhCCC---------------------------------CCcccCCCCCCCHHHHHHHcCCHH
Confidence 99999999999999999987642 345677889999999999999999
Q ss_pred HHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCC
Q psy2184 217 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 296 (459)
Q Consensus 217 ~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~ 296 (459)
++++|++.|++++..+..|.||||+|+..|+.+++++|++.++ +++..+..|.||||+|+..++.+++++|+++|++
T Consensus 126 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad 202 (237)
T 3b7b_A 126 LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC---DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD 202 (237)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTC---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999997 6777889999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy2184 297 PTIRNSRHETALDLAAQYGRLETVDTLVR 325 (459)
Q Consensus 297 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~ 325 (459)
++.++..|.||+++|+.+++...+..+++
T Consensus 203 ~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 203 VTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp TTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877766665
No 17
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3e-40 Score=285.42 Aligned_cols=232 Identities=27% Similarity=0.378 Sum_probs=208.2
Q ss_pred CcCCCCCCchHHHHHhcCCHHHHHHHHh----cCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy2184 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLC----HGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 135 (459)
Q Consensus 60 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~ 135 (459)
+.+|..|.||||+||..|+.+++++|++ .|. +++..+..|.||||+|+..|+.+++++|++.|++++..+..|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 79 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR---ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG 79 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTC---CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCC---CCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence 4578999999999999999999999997 677 788889999999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCH
Q psy2184 136 ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHK 215 (459)
Q Consensus 136 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~ 215 (459)
.||||+|+..++.+++++|++.+.. ...+++..+..|.||||.|+..++.
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~------------------------------~~~~~~~~~~~g~t~L~~A~~~~~~ 129 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAP------------------------------GTLDLEARNYDGLTALHVAVNTECQ 129 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCT------------------------------TSCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC------------------------------ccccccccCcCCCcHHHHHHHcCCH
Confidence 9999999999999999999987542 1235577788999999999999999
Q ss_pred HHHHHHHhCCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCC
Q psy2184 216 EIVELLLTNEASTNIVD-TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294 (459)
Q Consensus 216 ~~~~~Ll~~~~~~~~~~-~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g 294 (459)
+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+..++.+++++|+++|
T Consensus 130 ~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 206 (241)
T 1k1a_A 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA---NVNAQMYSGSSALHSASGRGLLPLVRTLVRSG 206 (241)
T ss_dssp HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 99999999999999988 789999999999999999999999997 67788899999999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy2184 295 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 327 (459)
Q Consensus 295 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 327 (459)
++++.++..|.||+++|+..++.++++.|.+.+
T Consensus 207 a~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 207 ADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239 (241)
T ss_dssp CCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred CCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence 999999999999999999999999998888764
No 18
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.6e-40 Score=286.04 Aligned_cols=250 Identities=25% Similarity=0.300 Sum_probs=225.7
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCC
Q psy2184 13 GKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 92 (459)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~ 92 (459)
.+.+.|+.|+..|+.++|++|++. |++++..|..|.||||+|+..|+.+++++|++.|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-------------------g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-- 60 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ-------------------GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA-- 60 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-------------------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC-------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC--
Confidence 467899999999999999999986 67889999999999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCC
Q psy2184 93 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST 172 (459)
Q Consensus 93 ~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 172 (459)
+++..+..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..++.+++++|++.
T Consensus 61 -~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--------------- 123 (261)
T 2xai_A 61 -QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAY--------------- 123 (261)
T ss_dssp -CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHT---------------
T ss_pred -CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHc---------------
Confidence 7888899999999999999999999999999999985 45699999999999999999999875
Q ss_pred CCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q psy2184 173 LFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252 (459)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~ 252 (459)
+.+++..+..|.||||.|+..++.+++++|++.|++++. +..|.||||+|+..++.++++
T Consensus 124 -------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~ 183 (261)
T 2xai_A 124 -------------------GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELAC 183 (261)
T ss_dssp -------------------TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHH
T ss_pred -------------------CCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHH
Confidence 445677888999999999999999999999999999995 888999999999999999999
Q ss_pred HHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCC--------CCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy2184 253 VLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDP--------TIRNSRHETALDLAAQYGRLETVDTLV 324 (459)
Q Consensus 253 ~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~--------~~~~~~~~~~l~~a~~~~~~~~~~~Ll 324 (459)
+|+++|+ +++..+..|.||+++|+..+ ++++.|++++... +.++..|.|+++.+......+.++.++
T Consensus 184 ~Ll~~ga---d~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 184 LLMDFGA---DTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258 (261)
T ss_dssp HHHHTTC---CTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHH
T ss_pred HHHHcCC---CCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHH
Confidence 9999998 67888999999999999665 4899999987654 367889999999999988888887776
Q ss_pred h
Q psy2184 325 R 325 (459)
Q Consensus 325 ~ 325 (459)
.
T Consensus 259 ~ 259 (261)
T 2xai_A 259 L 259 (261)
T ss_dssp T
T ss_pred h
Confidence 4
No 19
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.1e-39 Score=275.73 Aligned_cols=227 Identities=25% Similarity=0.287 Sum_probs=210.6
Q ss_pred CCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy2184 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 142 (459)
Q Consensus 63 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a 142 (459)
+..+.+|||.|+..|+++++++|++.++. .++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 80 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 80 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGG--GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchh--hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHH
Confidence 34578999999999999999999998874 4677889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHH
Q psy2184 143 AQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222 (459)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll 222 (459)
+..++.+++++|++. +.+++..+..|.||||.|+..++.+++++|+
T Consensus 81 ~~~~~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 126 (231)
T 3aji_A 81 ASAGXDEIVKALLVK----------------------------------GAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126 (231)
T ss_dssp HHHTCHHHHHHHHHT----------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHcCHHHHHHHHHHc----------------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999999999999875 3445777889999999999999999999999
Q ss_pred hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCCCCCC
Q psy2184 223 TNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS 302 (459)
Q Consensus 223 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~ 302 (459)
+.|++++..+..|.||||+|+..|+.+++++|+++++ +++..+..|.||||+|+..++.+++++|+++|++++.++.
T Consensus 127 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 203 (231)
T 3aji_A 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA---STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK 203 (231)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC---CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred HcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC---CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Confidence 9999999999999999999999999999999999997 6777889999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy2184 303 RHETALDLAAQYGRLETVDTLVRTHP 328 (459)
Q Consensus 303 ~~~~~l~~a~~~~~~~~~~~Ll~~~~ 328 (459)
.|.||+++|+..++.+++++|.+.++
T Consensus 204 ~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 204 EEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp TSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhhHHHHHHHHHccccc
Confidence 99999999999999999998887654
No 20
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=7.4e-41 Score=307.28 Aligned_cols=269 Identities=21% Similarity=0.217 Sum_probs=219.5
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCC
Q psy2184 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTL 173 (459)
Q Consensus 94 ~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 173 (459)
+.+..|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.+..
T Consensus 12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------- 78 (364)
T 3ljn_A 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV------------- 78 (364)
T ss_dssp ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC-------------
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-------------
Confidence 4556788899999999999999999999999999999999999999999999999999999987532
Q ss_pred CCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhC----CCCCcc-----------------cC
Q psy2184 174 FPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTN----EASTNI-----------------VD 232 (459)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~----~~~~~~-----------------~~ 232 (459)
..+..|.||||.|+..|+.+++++|++. |.+++. .+
T Consensus 79 -----------------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (364)
T 3ljn_A 79 -----------------------HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKH 135 (364)
T ss_dssp -----------------------CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEE
T ss_pred -----------------------ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCC
Confidence 2234789999999999999999999998 777766 77
Q ss_pred CCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCC-----CCCCCCCCC
Q psy2184 233 TKGSSPLHLAAWTG--NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD-----PTIRNSRHE 305 (459)
Q Consensus 233 ~~~~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~~~ 305 (459)
..|.||||+|+..| +.+++++|+++|+ +++..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.
T Consensus 136 ~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~ 212 (364)
T 3ljn_A 136 CKGQTALHWCVGLGPEYLEMIKILVQLGA---SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN 212 (364)
T ss_dssp ESCCCHHHHHHHSCGGGHHHHHHHHHHTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred CCCCCHHHHHHHcCCchHHHHHHHHHcCC---CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence 78889999999988 8899999998887 5677788889999999999999999999988888 888888888
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCChhHHHHhcCcHHHHHHHHHcCCCCCC------------C
Q psy2184 306 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNI------------R 373 (459)
Q Consensus 306 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~------------~ 373 (459)
||||+|+..|+.+++++|++.+.++ +..+..|.|||++|+..|+.+++++|+++|++++. .
T Consensus 213 t~L~~A~~~g~~~~v~~Ll~~gad~-------~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 285 (364)
T 3ljn_A 213 SHLHWAILINWEDVAMRFVEMGIDV-------NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP 285 (364)
T ss_dssp CTTHHHHTTTCHHHHHHHHTTTCCT-------TCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCG
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccc
Confidence 8888888888888888888887664 23345677888888888888888888888765432 2
Q ss_pred CCCC-CHHHHHHHcCCHHHHHHHHHCCCCCcccccC
Q psy2184 374 TASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSK 408 (459)
Q Consensus 374 ~~~~-t~L~~A~~~~~~~i~~~Ll~~ga~~~~~~~~ 408 (459)
+..+ ||++.|+..+..+.+..|+..+++...++.+
T Consensus 286 ~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~~~~~~ 321 (364)
T 3ljn_A 286 DRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLN 321 (364)
T ss_dssp GGCCCCTTSCSSCCHHHHHHHHHHHHHHHHHHTC--
T ss_pred cccccccchhhhhccCHHHHHHHHHHHHHHHhhccC
Confidence 2233 7888888888777777777776554443333
No 21
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.4e-39 Score=286.79 Aligned_cols=254 Identities=20% Similarity=0.218 Sum_probs=190.1
Q ss_pred CCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy2184 59 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETA 138 (459)
Q Consensus 59 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~ 138 (459)
++.+|..|.||||+||..|+.+++++|++.|++...++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 45678999999999999999999999999998544488899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCchHHHHHhh------ccCCCCCCChHHHHHHc-------CCccccCCCCccCCCCCccH
Q psy2184 139 LDLAAQYGRLETVDTLVRTHPGLIQAYNAR------AQSTLFPASPLHLASRN-------GHSLRRGPGANVQDSSGYSA 205 (459)
Q Consensus 139 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 205 (459)
||+|+..++.+++++|++.+.......... .........+....... ......+..++..+..|.||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence 999999999999999998765421100000 00000011111111111 11133445567778888999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCH
Q psy2184 206 LHHAALNGHKEIVELLLTNEASTNIVDTK-GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHT 284 (459)
Q Consensus 206 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~ 284 (459)
||.|+..|+.+++++|++.|++++..+.. |.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+..++.
T Consensus 162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga---d~~~~d~~g~tpL~~A~~~~~~ 238 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA---DPTARMYGGRTPLGSALLRPNP 238 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHTSSCH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC---CCcccccCCCCHHHHHHHcCCc
Confidence 99999999999999999999888888754 8899999999999999999999887 5677888899999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q psy2184 285 PVVSQLLEHSCDPTIRNSRHETALDLAAQYG 315 (459)
Q Consensus 285 ~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~ 315 (459)
+++++|+++|++++.++..|.||+++|....
T Consensus 239 ~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 239 ILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHHHHTTCCCCCCC--------------
T ss_pred HHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 9999999999999999999999998887654
No 22
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.9e-39 Score=280.75 Aligned_cols=226 Identities=25% Similarity=0.304 Sum_probs=175.3
Q ss_pred CCccCCCCCccHHHHHHHcC-------------CHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy2184 194 GANVQDSSGYSALHHAALNG-------------HKEIVELLLTNEASTNI-VDTKGSSPLHLAAWTGNVDIVRVLLCHGP 259 (459)
Q Consensus 194 ~~~~~~~~~~~~l~~a~~~~-------------~~~~~~~Ll~~~~~~~~-~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~ 259 (459)
+++.++..|.||||.|+..| +.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|+
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 46778899999999999977 89999999999999865 48899999999999999999999999997
Q ss_pred CCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhc
Q psy2184 260 SVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC-DPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARA 338 (459)
Q Consensus 260 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 338 (459)
+++..+..|.||||+|+..++.+++++|+++++ +++..+..|.||||+|+..++.+++++|++.+..+ .
T Consensus 82 ---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~ 151 (253)
T 1yyh_A 82 ---DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-------N 151 (253)
T ss_dssp ---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-------T
T ss_pred ---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-------C
Confidence 677788999999999999999999999999987 89999999999999999999999999999988765 2
Q ss_pred ccCCCCCChhHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCCHHHHHh
Q psy2184 339 QSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLK 417 (459)
Q Consensus 339 ~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll~~ga~~~~~~~~g~t~l~~a~ 417 (459)
..+..|.||||+|+..|+.+++++|+++|++++..+..| ||||+|+..++.+++++|+++|++++.+|..|.||+++|.
T Consensus 152 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 231 (253)
T 1yyh_A 152 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 231 (253)
T ss_dssp CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHH
Confidence 344568899999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCCchhhhhh
Q psy2184 418 QFPPHAVHDIST 429 (459)
Q Consensus 418 ~~~~~~~~~~~~ 429 (459)
+.+...+...+.
T Consensus 232 ~~g~~~i~~~l~ 243 (253)
T 1yyh_A 232 ERMHHDIVRLLD 243 (253)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 999876554444
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.1e-38 Score=272.96 Aligned_cols=219 Identities=24% Similarity=0.291 Sum_probs=205.8
Q ss_pred CCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCC
Q psy2184 194 GANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNET 273 (459)
Q Consensus 194 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t 273 (459)
+++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++. +++..+..|.|
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t 79 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA---LVDPKDAEGST 79 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC---CCCCCCTTSCC
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC---CCCCCCCCCCc
Confidence 457788999999999999999999999999999999999999999999999999999999999997 56777889999
Q ss_pred HhhHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCChhHHHH
Q psy2184 274 ALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS 352 (459)
Q Consensus 274 ~L~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~ 352 (459)
|||+|+..|+.+++++|+++| .+++..+..|.|||++|+..++.+++++|++.+..+ ...+..|.||||+|+
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~ 152 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-------NIRDNEENICLHWAA 152 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CccCCCCCCHHHHHH
Confidence 999999999999999999998 899999999999999999999999999999988764 234456789999999
Q ss_pred hcCcHHHHHHHHHcCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCCHHHHHhcCCCC
Q psy2184 353 RNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQFPPH 422 (459)
Q Consensus 353 ~~~~~~~~~~Ll~~g~~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~ 422 (459)
..|+.+++++|+++|++++..+..| ||||+|+..++.+++++|+++|++++.+|.+|.||+|+|...+..
T Consensus 153 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 153 FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp HHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred HCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999988 999999999999999999999999999999999999999998753
No 24
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=9.6e-39 Score=273.99 Aligned_cols=226 Identities=27% Similarity=0.319 Sum_probs=210.1
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCC
Q psy2184 13 GKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 92 (459)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~ 92 (459)
..++.|+.|++.|+++.|+++++... ..++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~------------------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-- 64 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADK------------------SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV-- 64 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCG------------------GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--
T ss_pred cccchHHHHHHhCCHHHHHHHHHhch------------------hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCC--
Confidence 46678999999999999999998753 2356678899999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCC
Q psy2184 93 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST 172 (459)
Q Consensus 93 ~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 172 (459)
+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.
T Consensus 65 -~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--------------- 128 (231)
T 3aji_A 65 -PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG--------------- 128 (231)
T ss_dssp -CSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---------------
T ss_pred -CCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---------------
Confidence 7888899999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q psy2184 173 LFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252 (459)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~ 252 (459)
+.+++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.++++
T Consensus 129 -------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 189 (231)
T 3aji_A 129 -------------------GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAK 189 (231)
T ss_dssp -------------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred -------------------CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHH
Confidence 4455778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCC
Q psy2184 253 VLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 296 (459)
Q Consensus 253 ~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~ 296 (459)
+|+++|+ +++..+..|.||+++|+..++.+++++|.++|++
T Consensus 190 ~Ll~~ga---~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 190 FLVTQGA---SIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HHHHTTC---CSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCC---CCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 9999998 5778899999999999999999999999998765
No 25
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.1e-38 Score=280.68 Aligned_cols=219 Identities=26% Similarity=0.264 Sum_probs=187.2
Q ss_pred CccCCCCCccHHHHHHHcCCHHHHHHHHhCCCC---CcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCC
Q psy2184 195 ANVQDSSGYSALHHAALNGHKEIVELLLTNEAS---TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDN 271 (459)
Q Consensus 195 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~---~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g 271 (459)
++..+..|.||||.|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|+++|+ +++..+..|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga---~~~~~~~~g 78 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA---GVLVAERGG 78 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC---CSSCCCTTS
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCCCCCCC
Confidence 356788999999999999999999999999888 78889999999999999999999999999998 677888999
Q ss_pred CCHhhHHHHcCCHHHHHHHHhCCCC-----------------------------------------------CCCCCCCC
Q psy2184 272 ETALHCAAQYGHTPVVSQLLEHSCD-----------------------------------------------PTIRNSRH 304 (459)
Q Consensus 272 ~t~L~~a~~~~~~~~~~~Ll~~g~~-----------------------------------------------~~~~~~~~ 304 (459)
.||||+|+..++.+++++|+++|++ ++..+..|
T Consensus 79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (282)
T 1oy3_D 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158 (282)
T ss_dssp CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence 9999999999999999999998765 66778899
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCChhHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CHHHHH
Q psy2184 305 ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEA 383 (459)
Q Consensus 305 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-t~L~~A 383 (459)
.||||+|+..|+.+++++|++.+..+.. .....|.||||+|+..|+.+++++|+++|++++.++..| ||||+|
T Consensus 159 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 232 (282)
T 1oy3_D 159 HTPLHVAVIHKDAEMVRLLRDAGADLNK------PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHTCCTTC------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHH
Confidence 9999999999999999999999876521 122347899999999999999999999999999999999 999999
Q ss_pred HHcCCHHHHHHHHHCCCCCcccccCCCCHHHHHhcCCCC
Q psy2184 384 ALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQFPPH 422 (459)
Q Consensus 384 ~~~~~~~i~~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~ 422 (459)
+.+++.+++++|+++|++++.+|.+|.||+++|......
T Consensus 233 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 233 LLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp HTSSCHHHHHHHHHTTCCCCCCC----------------
T ss_pred HHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcccc
Confidence 999999999999999999999999999999999987643
No 26
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.9e-38 Score=271.55 Aligned_cols=229 Identities=28% Similarity=0.324 Sum_probs=207.1
Q ss_pred cCCCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCC
Q psy2184 12 MGKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 91 (459)
Q Consensus 12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~ 91 (459)
..+.+.|+.|+..|++++|++|++.. ...|.+++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~---------------~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~- 70 (241)
T 1k1a_A 7 EDGDTPLHIAVVQGNLPAVHRLVNLF---------------QQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA- 70 (241)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHHHHH---------------HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHHH---------------HhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC-
Confidence 45788999999999999999999852 34588999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHh
Q psy2184 92 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC----DPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNA 167 (459)
Q Consensus 92 ~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~----~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~ 167 (459)
+++..+..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+..++.+++++|++.+
T Consensus 71 --~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--------- 139 (241)
T 1k1a_A 71 --SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG--------- 139 (241)
T ss_dssp --CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---------
T ss_pred --CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC---------
Confidence 678889999999999999999999999999988 88889999999999999999999999998764
Q ss_pred hccCCCCCCChHHHHHHcCCccccCCCCccCC-CCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcC
Q psy2184 168 RAQSTLFPASPLHLASRNGHSLRRGPGANVQD-SSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTG 246 (459)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~ 246 (459)
.+++..+ ..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus 140 -------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 194 (241)
T 1k1a_A 140 -------------------------ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 194 (241)
T ss_dssp -------------------------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT
T ss_pred -------------------------CCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 3445566 78999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCC
Q psy2184 247 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC 295 (459)
Q Consensus 247 ~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~ 295 (459)
+.+++++|+++|+ +++..+..|.|||++|+..++.++++.|.+.++
T Consensus 195 ~~~~v~~Ll~~ga---~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 195 LLPLVRTLVRSGA---DSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp CHHHHHHHHHTTC---CTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred CHHHHHHHHhcCC---CCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 9999999999998 678889999999999999999999999988764
No 27
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-39 Score=279.87 Aligned_cols=229 Identities=26% Similarity=0.332 Sum_probs=177.0
Q ss_pred cCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCC-----CCCCCCCCCccHHHHHHHcCCH-HHHHHHHHCCCCCCCCCCC
Q psy2184 61 IVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP-----NVNLMTKDNETALHCAAQYGHT-PVVSQLLEHSCDPTIRNSR 134 (459)
Q Consensus 61 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----~~~~~~~~~~t~L~~A~~~~~~-~iv~~Ll~~g~~~~~~~~~ 134 (459)
.+|..+.++|+.||..|++++|++|++.|+... .++..+..+.|||+.|+..+.. .++++|++.|++++..|..
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 357778899999999999999999999987421 2456677899999999988775 5899999999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCC
Q psy2184 135 HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGH 214 (459)
Q Consensus 135 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ 214 (459)
|.||||+|+..|+.+++++|++. +.+++..+..|.||++.|+..++
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~----------------------------------~a~~~~~~~~g~t~l~~a~~~~~ 131 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKH----------------------------------GANAGARNADQAVPLHLACQQGH 131 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHT----------------------------------TCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCCHHHHHHHcCcHHHHHHHHhc----------------------------------CCCcCccCCCCCCccccccccCh
Confidence 99999999999999999999875 44567788899999999999999
Q ss_pred HHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCC
Q psy2184 215 KEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294 (459)
Q Consensus 215 ~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g 294 (459)
.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+..|+.+++++|+++|
T Consensus 132 ~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga---dvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G 208 (269)
T 4b93_B 132 FQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA---SINASNNKGNTALHEAVIEKHVFVVELLLLHG 208 (269)
T ss_dssp HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTC---CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC---CCCccccCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999998 67888999999999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHcCC-HHHHHHHHhc
Q psy2184 295 CDPTIRNSRHETALDLAAQYGR-LETVDTLVRT 326 (459)
Q Consensus 295 ~~~~~~~~~~~~~l~~a~~~~~-~~~~~~Ll~~ 326 (459)
++++.+|..|.|||++|++++. .++++.+...
T Consensus 209 ad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~ 241 (269)
T 4b93_B 209 ASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSC 241 (269)
T ss_dssp CCSCCCCTTSCCSGGGSCTTCHHHHHTTC----
T ss_pred CCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHh
Confidence 9999999999999999988775 3444444433
No 28
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=265.20 Aligned_cols=232 Identities=30% Similarity=0.368 Sum_probs=208.5
Q ss_pred CCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCc
Q psy2184 59 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN-SRHET 137 (459)
Q Consensus 59 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~-~~~~t 137 (459)
++..|..|.|+|+.|+..|+.+++++|++.|+ +++..+..|.||||+|+..|+.+++++|++.|++++..+ ..+.|
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t 78 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGY---DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST 78 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCC---CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC
Confidence 34567889999999999999999999999998 678888999999999999999999999999999987655 44899
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHH
Q psy2184 138 ALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEI 217 (459)
Q Consensus 138 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 217 (459)
|||+|+..++.+++++|++. +.+++..+..|.||||.|+..++.++
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~l~~A~~~~~~~~ 124 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKY----------------------------------GADPSLIDGEGCSCIHLAAQFGHTSI 124 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHT----------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred hhHHHHHcCCHHHHHHHHHc----------------------------------CCCCcccCCCCCCHHHHHHHcCHHHH
Confidence 99999999999999999875 44457778899999999999999999
Q ss_pred HHHHHhCCCCCcccCCCCCcHHHHHHHcCC-HHHHHHHHhCCCCCCCcccccC-CCCCHhhHHHHcCCHHHHHHHHhCCC
Q psy2184 218 VELLLTNEASTNIVDTKGSSPLHLAAWTGN-VDIVRVLLCHGPSVPNVNLMTK-DNETALHCAAQYGHTPVVSQLLEHSC 295 (459)
Q Consensus 218 ~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~~-~g~t~L~~a~~~~~~~~~~~Ll~~g~ 295 (459)
+++|++.|++++..+..|.||||+|+..++ .+++++|++.+. +++..+. .|.||||+|+..++.+++++|+++|+
T Consensus 125 ~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 201 (240)
T 3eu9_A 125 VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV---SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201 (240)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTC---CTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCC---CcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999999999997766 899999999998 5566665 89999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch
Q psy2184 296 DPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 330 (459)
Q Consensus 296 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~ 330 (459)
+++..+..|.||+++|+..++.+++++|++.+...
T Consensus 202 ~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 202 NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999887653
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-38 Score=275.03 Aligned_cols=233 Identities=28% Similarity=0.413 Sum_probs=173.5
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCH-HHHHHHHhcCCCC
Q psy2184 14 KDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV-DIVRVLLCHGPSV 92 (459)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~-~~v~~Ll~~g~~~ 92 (459)
+.+.|+.||..|++++|++|++.++.... .....++..+..+.|||+.|+..++. .++++|++.|+
T Consensus 11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~-----------~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga-- 77 (269)
T 4b93_B 11 EVEKLLRAVADGDLEMVRYLLEWTEEDLE-----------DAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL-- 77 (269)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------CCC--
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCcccc-----------cccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC--
Confidence 34689999999999999999998754321 11334566788899999999998876 48899999999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCC
Q psy2184 93 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST 172 (459)
Q Consensus 93 ~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 172 (459)
+++..|..|.||||+|+..|+.+++++|++.|++++..+..|.||++.|+..++.+++++|++.
T Consensus 78 -dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~--------------- 141 (269)
T 4b93_B 78 -GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS--------------- 141 (269)
T ss_dssp -CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---------------
T ss_pred -CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC---------------
Confidence 7889999999999999999999999999999999999999999999999999999999999775
Q ss_pred CCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q psy2184 173 LFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252 (459)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~ 252 (459)
+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++++
T Consensus 142 -------------------g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~ 202 (269)
T 4b93_B 142 -------------------NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVE 202 (269)
T ss_dssp -------------------TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred -------------------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHH
Confidence 5566888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCcccccCCCCCHhhHHHHcCC-HHHHHHHHhCCCCC
Q psy2184 253 VLLCHGPSVPNVNLMTKDNETALHCAAQYGH-TPVVSQLLEHSCDP 297 (459)
Q Consensus 253 ~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~-~~~~~~Ll~~g~~~ 297 (459)
+|+++|+ +++..+..|.||||+|+++++ .++++++.+.+...
T Consensus 203 ~Ll~~Ga---d~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~ 245 (269)
T 4b93_B 203 LLLLHGA---SVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL 245 (269)
T ss_dssp HHHHTTC---CSCCCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred HHHHCCC---CCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence 9999998 678889999999999998876 35556665555443
No 30
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=6.5e-38 Score=276.56 Aligned_cols=233 Identities=23% Similarity=0.226 Sum_probs=193.1
Q ss_pred HHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHC
Q psy2184 45 AREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 124 (459)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~ 124 (459)
..++.++|... +++.+|..|.||||+|+..|+.+++++|++.|+ +++.. +|.||||+|+..|+.+++++|+++
T Consensus 12 ~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 12 SKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGA---LKNLL--ENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTG---GGSCC--TTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCC---CCCCC--CCCCHHHHHHHcCCHHHHHHHHHC
Confidence 34555555554 477889999999999999999999999999998 56655 489999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCC-c
Q psy2184 125 SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSG-Y 203 (459)
Q Consensus 125 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 203 (459)
|++++..+..|.||||+|+..|+.+++++|++.+. +++..+..| .
T Consensus 85 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga----------------------------------~~~~~~~~g~~ 130 (285)
T 3kea_A 85 GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW----------------------------------RLMFYGKTGWK 130 (285)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCG----------------------------------GGGGCSSSGGG
T ss_pred CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC----------------------------------CCCccCCCCCC
Confidence 99999999999999999999999999999987643 346677778 7
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCH-hhHHHHcC
Q psy2184 204 SALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA-LHCAAQYG 282 (459)
Q Consensus 204 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~-L~~a~~~~ 282 (459)
||||.|+..|+.+++++|++.|++.... ..|.||||+|+..|+.+++++|+++|+ +++..+..|.|| ||+|+..+
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga---d~n~~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMT---STNTNNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHH---HTCTTCCCBCCTTHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCC---CCCcccCCCCChHHHHHHHcC
Confidence 9999999999999999999988776322 278899999999999999999998887 577778888887 99999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCc
Q psy2184 283 HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 329 (459)
Q Consensus 283 ~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~ 329 (459)
+.+++++|+++|++++..+. .++..++.+++++|++.+.+
T Consensus 207 ~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~ 246 (285)
T 3kea_A 207 DIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVE 246 (285)
T ss_dssp CHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCC
Confidence 99999999999998887762 34556666666666666544
No 31
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.3e-37 Score=263.91 Aligned_cols=221 Identities=25% Similarity=0.294 Sum_probs=198.5
Q ss_pred CCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCC--CCCCC-CCCCCCcHHHHH
Q psy2184 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS--CDPTI-RNSRHETALDLA 142 (459)
Q Consensus 66 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g--~~~~~-~~~~~~t~l~~a 142 (459)
|.||||+|+..|+.+++++|++.|++ ..+..+..|.||||+|+..|+.+++++|++.| ++++. .+..|.||||+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPS--LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGG--GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCcc--ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 68999999999999999999999984 34457899999999999999999999999999 55555 778999999999
Q ss_pred HHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHH
Q psy2184 143 AQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222 (459)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll 222 (459)
+..++.+++++|++.+. ..+++..+..|.||||.|+..++.+++++|+
T Consensus 80 ~~~~~~~~~~~Ll~~g~--------------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 127 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPL--------------------------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127 (228)
T ss_dssp HHHCCHHHHHHHHSSSS--------------------------------CCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHhCCC--------------------------------CcccccCCcCCCCHHHHHHHcCCHhHHHHHH
Confidence 99999999999987641 1355777889999999999999999999999
Q ss_pred hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHH-hCCCCCCCCC
Q psy2184 223 TNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL-EHSCDPTIRN 301 (459)
Q Consensus 223 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll-~~g~~~~~~~ 301 (459)
+.|++++..+..|.||||+|+..|+.+++++|++.+.. +++..+..|.||||+|+..++.+++++|+ ++|++++.++
T Consensus 128 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~ 205 (228)
T 2dzn_A 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS--AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205 (228)
T ss_dssp HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBC
T ss_pred HcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcc--cccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence 99999999999999999999999999999999999932 67888999999999999999999999999 8999999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHh
Q psy2184 302 SRHETALDLAAQYGRLETVDTLVR 325 (459)
Q Consensus 302 ~~~~~~l~~a~~~~~~~~~~~Ll~ 325 (459)
..|.||+++|+.. ++.++|++
T Consensus 206 ~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 206 NKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp TTSCBGGGGCSST---THHHHHHT
T ss_pred CCCCcHHHHHHHH---HHHHHHHh
Confidence 9999999999765 55666654
No 32
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=261.65 Aligned_cols=234 Identities=25% Similarity=0.317 Sum_probs=189.2
Q ss_pred CCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCC
Q psy2184 96 NLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFP 175 (459)
Q Consensus 96 ~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 175 (459)
+..|..+.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.+...
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-------------- 68 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV-------------- 68 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--------------
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc--------------
Confidence 445788999999999999999999999999999999999999999999999999999998865432
Q ss_pred CChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy2184 176 ASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255 (459)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll 255 (459)
....+..|.|||+.|+..++.+++++|++.|++++..+..|.|||++|+..|+.+++++|+
T Consensus 69 -------------------~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 129 (240)
T 3eu9_A 69 -------------------DQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129 (240)
T ss_dssp -------------------TCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -------------------hhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHH
Confidence 1223445788999999888899999988888888888888888888888888888888888
Q ss_pred hCCCCCCCcccccCCCCCHhhHHHHcCC-HHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhcCCchHHH
Q psy2184 256 CHGPSVPNVNLMTKDNETALHCAAQYGH-TPVVSQLLEHSCDPTIRNS-RHETALDLAAQYGRLETVDTLVRTHPGLIQA 333 (459)
Q Consensus 256 ~~~~~~~~~~~~~~~g~t~L~~a~~~~~-~~~~~~Ll~~g~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~ 333 (459)
+++. +++..+..|.||||+|+..+. .+++++|++.|++++..+. .|
T Consensus 130 ~~~~---~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g----------------------------- 177 (240)
T 3eu9_A 130 AKGQ---DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK----------------------------- 177 (240)
T ss_dssp HTTC---CTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTC-----------------------------
T ss_pred hcCC---CccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCC-----------------------------
Confidence 8876 566677788888888886655 6788888888887776554 33
Q ss_pred hhhhcccCCCCCChhHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCccc
Q psy2184 334 YNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRII 405 (459)
Q Consensus 334 ~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll~~ga~~~~~ 405 (459)
.||||+|+..++.+++++|+++|++++..+..| |||++|+..++.+++++|+++|++....
T Consensus 178 -----------~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 178 -----------NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp -----------CCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC------
T ss_pred -----------CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCcC
Confidence 466677777777778888888899999888888 9999999999999999999998876543
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-37 Score=278.38 Aligned_cols=218 Identities=28% Similarity=0.345 Sum_probs=197.3
Q ss_pred CCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHH
Q psy2184 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCA 278 (459)
Q Consensus 199 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a 278 (459)
+..+.|+|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga---~~~~~~~~g~tpL~~A 113 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA---NINQPDNEGWIPLHAA 113 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC---CCCCCCCCCCcHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999997 6778889999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhh--------------------hhc
Q psy2184 279 AQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN--------------------ARA 338 (459)
Q Consensus 279 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--------------------~~~ 338 (459)
+..|+.+++++|+++|++++..+..|.|||++|+..+..+++++++........... ...
T Consensus 114 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (299)
T 1s70_B 114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV 193 (299)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchh
Confidence 999999999999999999999999999999999999999999998875333221110 011
Q ss_pred ccCCCCCChhHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCCHHHHHh
Q psy2184 339 QSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLK 417 (459)
Q Consensus 339 ~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll~~ga~~~~~~~~g~t~l~~a~ 417 (459)
.....|.||||+|+..|+.+++++|+++|++++..+..| ||||+|+.+++.+++++|+++|++++.+|..|.||+++|.
T Consensus 194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 273 (299)
T 1s70_B 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273 (299)
T ss_dssp CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 133568899999999999999999999999999999999 9999999999999999999999999999999999999997
Q ss_pred cC
Q psy2184 418 QF 419 (459)
Q Consensus 418 ~~ 419 (459)
+.
T Consensus 274 ~~ 275 (299)
T 1s70_B 274 ED 275 (299)
T ss_dssp SG
T ss_pred HH
Confidence 64
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=9.7e-37 Score=260.01 Aligned_cols=208 Identities=27% Similarity=0.306 Sum_probs=137.2
Q ss_pred HHHHHhCCCCCCcC-CCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCC-
Q psy2184 49 VELLLTNEASTNIV-DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC- 126 (459)
Q Consensus 49 ~~~l~~~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~- 126 (459)
+++|++.|++++.. |..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 7 i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 83 (223)
T 2f8y_A 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA---DANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83 (223)
T ss_dssp EETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTS
T ss_pred HHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 33444445666554 5667777777777777777777777776 556666777777777777777777777777765
Q ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHH
Q psy2184 127 DPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSAL 206 (459)
Q Consensus 127 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (459)
+++..+..|.||||+|+..++.+++++|++. +.+++..+..|.|||
T Consensus 84 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----------------------------------g~~~~~~~~~g~t~L 129 (223)
T 2f8y_A 84 DLDARMHDGTTPLILAARLAVEGMLEDLINS----------------------------------HADVNAVDDLGKSAL 129 (223)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----------------------------------TCCTTCBCTTSCBHH
T ss_pred CcccCCCCCCcHHHHHHHhCcHHHHHHHHHc----------------------------------CCCCcCcCCCCCcHH
Confidence 6666666667777777777777776666553 233455556666666
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHH
Q psy2184 207 HHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPV 286 (459)
Q Consensus 207 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~ 286 (459)
|.|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++++ +++..+..|.||+++|+..++.++
T Consensus 130 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~t~l~~A~~~~~~~i 206 (223)
T 2f8y_A 130 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA---NRDITDHMDRLPRDIAQERMHHDI 206 (223)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC---CCccccccCCCHHHHHHHhcchHH
Confidence 66666666666666666666666666666666666666666666666666665 445556666666666666666666
Q ss_pred HHHHHhCCCC
Q psy2184 287 VSQLLEHSCD 296 (459)
Q Consensus 287 ~~~Ll~~g~~ 296 (459)
+++|+++|+.
T Consensus 207 ~~~L~~~g~~ 216 (223)
T 2f8y_A 207 VRLLDEYNLV 216 (223)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHcCCC
Confidence 6666666654
No 35
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.9e-37 Score=273.54 Aligned_cols=211 Identities=19% Similarity=0.191 Sum_probs=170.3
Q ss_pred hcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy2184 75 WTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154 (459)
Q Consensus 75 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l 154 (459)
...+.+.+..++..+ +++.+|..|.||||+|+..|+.+++++|++.|++++..+ |.||||+|+..|+.+++++|
T Consensus 8 ~~~~~~~v~~lL~~~----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 8 NTWKSKQLKSFLSSK----DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GGCCHHHHHHHHHST----TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHH
T ss_pred HhcCHHHHHHHHHhC----CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHH
Confidence 344444444444433 467788999999999999999999999999999988874 89999999999999999999
Q ss_pred HhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCC
Q psy2184 155 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTK 234 (459)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~ 234 (459)
++. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..
T Consensus 82 l~~----------------------------------ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~ 127 (285)
T 3kea_A 82 LFS----------------------------------GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKT 127 (285)
T ss_dssp HHT----------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSS
T ss_pred HHC----------------------------------CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCC
Confidence 775 4456778888999999999999999999999999999998888
Q ss_pred C-CcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHH
Q psy2184 235 G-SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETA-LDLAA 312 (459)
Q Consensus 235 ~-~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~-l~~a~ 312 (459)
| .||||+|+..|+.+++++|+++++...+. ..|.||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+
T Consensus 128 g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~ 203 (285)
T 3kea_A 128 GWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL----AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAI 203 (285)
T ss_dssp GGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC----STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCccccc----cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHH
Confidence 8 79999999999999999999998743221 278899999999999999999999999988888877765 66666
Q ss_pred HcCCHHHHHHHHhcCCc
Q psy2184 313 QYGRLETVDTLVRTHPG 329 (459)
Q Consensus 313 ~~~~~~~~~~Ll~~~~~ 329 (459)
..++.+++++|++.+.+
T Consensus 204 ~~~~~~~v~~Ll~~gad 220 (285)
T 3kea_A 204 DNKDIEMLQALFKYDIN 220 (285)
T ss_dssp HHTCHHHHHHHTTSCBC
T ss_pred HcCCHHHHHHHHHcCCC
Confidence 65555555555544433
No 36
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=9.7e-37 Score=261.01 Aligned_cols=210 Identities=25% Similarity=0.277 Sum_probs=193.1
Q ss_pred CccHHHHHHHcCCHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccc-ccCCCCCHhhHHH
Q psy2184 202 GYSALHHAALNGHKEIVELLLTNEASTNI-VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNL-MTKDNETALHCAA 279 (459)
Q Consensus 202 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~g~t~L~~a~ 279 (459)
|.||||.|+..|+.+++++|++.+.+... .+..|.||||+|+..|+.+++++|++.+++. +++. .+..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV-NLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTC-CGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccc-cccccCCCCCCCHHHHHH
Confidence 68999999999999999999998877654 7889999999999999999999999999543 4444 7889999999999
Q ss_pred HcCCHHHHHHHHhCC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCChhHHHHhcCcH
Q psy2184 280 QYGHTPVVSQLLEHS--CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHR 357 (459)
Q Consensus 280 ~~~~~~~~~~Ll~~g--~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~ 357 (459)
..|+.+++++|+++| ++++..+..|.||||+|+..++.+++++|++.+... ...+..|.||||+|+..|+.
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~ 153 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-------RIKDKFNQIPLHRAASVGSL 153 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-------CCCCTTSCCHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-------cccCCCCCCHHHHHHHcCCH
Confidence 999999999999998 888999999999999999999999999999997764 23455788999999999999
Q ss_pred HHHHHHHHcC-CCCCCCCCCC-CHHHHHHHcCCHHHHHHHH-HCCCCCcccccCCCCHHHHHhcC
Q psy2184 358 SVVARLLQAG-LDVNIRTASG-TALHEAALCGKLEVVKTLL-EHGADLRIIDSKHNTVLDLLKQF 419 (459)
Q Consensus 358 ~~~~~Ll~~g-~~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll-~~ga~~~~~~~~g~t~l~~a~~~ 419 (459)
+++++|+++| ++++..+..| ||||+|+..++.+++++|+ ++|++++.+|.+|.||+++|.+.
T Consensus 154 ~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 154 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred HHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 9999999999 9999999999 9999999999999999999 89999999999999999999764
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.8e-36 Score=258.33 Aligned_cols=214 Identities=28% Similarity=0.338 Sum_probs=196.0
Q ss_pred CCHHHHHHHHhcCCCCCCCC-CCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy2184 77 GNVDIVRVLLCHGPSVPNVN-LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155 (459)
Q Consensus 77 g~~~~v~~Ll~~g~~~~~~~-~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~ 155 (459)
|+.+++++|++.|++ ++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+
T Consensus 2 g~~~~i~~Ll~~g~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQGAS---LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEETTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHcCCC---cccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 678899999999994 44 34789999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCC
Q psy2184 156 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKG 235 (459)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~ 235 (459)
+.+. ..++..+..|.||||.|+..++.+++++|++.|++++..+..|
T Consensus 79 ~~~~---------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 125 (223)
T 2f8y_A 79 RNRA---------------------------------TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 125 (223)
T ss_dssp HBTT---------------------------------SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTS
T ss_pred HcCC---------------------------------CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCC
Confidence 8643 2456678889999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q psy2184 236 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG 315 (459)
Q Consensus 236 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~ 315 (459)
.||||+|+..|+.+++++|+++++ +++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..+
T Consensus 126 ~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 202 (223)
T 2f8y_A 126 KSALHWAAAVNNVDAAVVLLKNGA---NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 202 (223)
T ss_dssp CBHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhc
Confidence 999999999999999999999987 67778899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCc
Q psy2184 316 RLETVDTLVRTHPG 329 (459)
Q Consensus 316 ~~~~~~~Ll~~~~~ 329 (459)
+.+++++|++.+..
T Consensus 203 ~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 203 HHDIVRLLDEYNLV 216 (223)
T ss_dssp CHHHHHHHHHTTCS
T ss_pred chHHHHHHHHcCCC
Confidence 99999999988765
No 38
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=6.3e-37 Score=273.49 Aligned_cols=243 Identities=23% Similarity=0.318 Sum_probs=172.0
Q ss_pred HHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q psy2184 20 EAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 99 (459)
Q Consensus 20 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~ 99 (459)
.+++.|+.+.++.++........+. ..+ .....+..+.||||.||..|+.+++++|++.|+ +++..+
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~---~~~~~~ 70 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPV---------VKR-KKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA---DINYAN 70 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSC---------CCC-SCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCC---CTTCBC
T ss_pred hHHHHHHHHHHHHHHcccccccccc---------ccC-cccccccCCccHHHHHHHcCCHHHHHHHHHcCC---CCcccC
Confidence 4778888888888887764432211 001 111234567899999999999999999999999 788889
Q ss_pred CCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChH
Q psy2184 100 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPL 179 (459)
Q Consensus 100 ~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (459)
..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~---------------------- 128 (299)
T 1s70_B 71 VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ---------------------- 128 (299)
T ss_dssp TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT----------------------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC----------------------
Confidence 9999999999999999999999999999999999999999999999999999999875
Q ss_pred HHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHh-CCCCCcc--------------------------cC
Q psy2184 180 HLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLT-NEASTNI--------------------------VD 232 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~~~~~~~--------------------------~~ 232 (459)
+.+++..+..|.||||.|+..++.+++++++. .+.+++. .+
T Consensus 129 ------------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 196 (299)
T 1s70_B 129 ------------GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196 (299)
T ss_dssp ------------TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred ------------CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhc
Confidence 44557788899999999999999999988776 3444332 22
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q psy2184 233 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAA 312 (459)
Q Consensus 233 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~ 312 (459)
..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+
T Consensus 197 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~---d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 273 (299)
T 1s70_B 197 KSGGTALHVAAAKGYTEVLKLLIQARY---DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273 (299)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTC---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHcCC---CCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 334445555555555555555554443 33444444455555555555555555555555554444444555544443
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=3.9e-38 Score=283.54 Aligned_cols=283 Identities=18% Similarity=0.172 Sum_probs=196.8
Q ss_pred CCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy2184 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 144 (459)
Q Consensus 65 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~ 144 (459)
.+.+|++ ....+++++|++.|+ +++..+..|.|+++ |+.+++++|+++|++++. ++++.|+.
T Consensus 22 ~~~~~~~----~~~~dlv~~ll~~ga---~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~------~~~~~a~~ 83 (327)
T 1sw6_A 22 RTAGPII----TFTHDLTSDFLSSPL---KIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI------QEMPTSLN 83 (327)
T ss_dssp ---CCEE----ECCTTCCCSTTTSSC---CCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------
T ss_pred ccccchh----hhcCchHHHHhhCCc---ccccCCCCCCcccC-----chhHHHHHHHHhccCCcc------ccchHhhh
Confidence 3445555 456678899999998 67777888888877 889999999999988543 34555543
Q ss_pred cCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhC
Q psy2184 145 YGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTN 224 (459)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~ 224 (459)
..... .. ........+..|.++..+..+++++|++.
T Consensus 84 ~~~~~------~~--------------------------------------~~~~~~~~~~~~~a~~~~~~~~~~~l~~~ 119 (327)
T 1sw6_A 84 NDSSN------RN--------------------------------------SEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119 (327)
T ss_dssp ----------------------------------------------------------------CHHHHHHHHHHHCTTS
T ss_pred ccccc------cc--------------------------------------ccccCCccchhHHHHHhhHHHHHHHHHhc
Confidence 21000 00 00011112345667777777888888888
Q ss_pred CCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCC---HHHHHHHHhCC-CCCCC
Q psy2184 225 EASTNI-VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH---TPVVSQLLEHS-CDPTI 299 (459)
Q Consensus 225 ~~~~~~-~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~Ll~~g-~~~~~ 299 (459)
|++++. .+..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+..|+ .++++.|++.+ ++++.
T Consensus 120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga---d~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~ 196 (327)
T 1sw6_A 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS---NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196 (327)
T ss_dssp CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC---CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC
Confidence 888888 78888888888888888888888888887 567778888888888888887 56777777765 56778
Q ss_pred CCCCCCcHHHHHHH----cCCHHHHHHHHhcCCchHHH-------------hhhhcccCCCCCChhHHHHhcCcHHHHHH
Q psy2184 300 RNSRHETALDLAAQ----YGRLETVDTLVRTHPGLIQA-------------YNARAQSTLFPASPLHLASRNGHRSVVAR 362 (459)
Q Consensus 300 ~~~~~~~~l~~a~~----~~~~~~~~~Ll~~~~~~~~~-------------~~~~~~~~~~~~~~l~~A~~~~~~~~~~~ 362 (459)
++..|.||||+|+. .|+.+++++|++.+...... .......+..|.|||++|+. +++
T Consensus 197 ~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~ 270 (327)
T 1sw6_A 197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKW 270 (327)
T ss_dssp ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHH
T ss_pred CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHH
Confidence 88888888888888 78888888888764322111 11112334567899999986 899
Q ss_pred HHHcCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCCHHHHHhcCC
Q psy2184 363 LLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQFP 420 (459)
Q Consensus 363 Ll~~g~~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll~~ga~~~~~~~~g~t~l~~a~~~~ 420 (459)
|+++ +++.++..| ||||+|+.+++.+++++|+++|++++.+|.+|.||||+|++.+
T Consensus 271 Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 271 IIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred HHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 9998 588889888 9999999999999999999999999999999999999998753
No 40
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.1e-35 Score=255.72 Aligned_cols=221 Identities=26% Similarity=0.321 Sum_probs=187.6
Q ss_pred cCCCCCCchHHHHHhcCCHHHHHHHHhcCCCC-CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy2184 61 IVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV-PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 139 (459)
Q Consensus 61 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l 139 (459)
.+|..|.||||+|+..|+.+++++|++.++.. .+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 46788999999999999999999999987632 14788899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHH
Q psy2184 140 DLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVE 219 (459)
Q Consensus 140 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 219 (459)
|+|+..++.+++++|++.+... ......+..+..|.||||+|+..|+.++++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~----------------------------~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 134 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTP----------------------------HLHSILKATNYNGHTCLHLASIHGYLGIVE 134 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTT----------------------------SSSCGGGCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcccch----------------------------hHHHHhhccCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999999875431 011123567788999999999999999999
Q ss_pred HHHhCCCCCcccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCC
Q psy2184 220 LLLTNEASTNIVDT-KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPT 298 (459)
Q Consensus 220 ~Ll~~~~~~~~~~~-~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~ 298 (459)
+|++.|++++..+. .|.||||+|+..|+.+++++|+++|+ +++..+..|.|||++|+..++.+++++|+++|++..
T Consensus 135 ~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA---DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp HHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC---CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred HHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 99999999999987 89999999999999999999999987 677888999999999999999999999999999765
Q ss_pred --CCCCCCCcHHHHHH
Q psy2184 299 --IRNSRHETALDLAA 312 (459)
Q Consensus 299 --~~~~~~~~~l~~a~ 312 (459)
..+..+.++...+.
T Consensus 212 ~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 212 QMLPESEDEESYDTES 227 (236)
T ss_dssp SSCCCCCTTTCCCCC-
T ss_pred hcCCccchHHHHhhhc
Confidence 66777777665443
No 41
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-36 Score=271.69 Aligned_cols=267 Identities=16% Similarity=0.096 Sum_probs=147.0
Q ss_pred HHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCC
Q psy2184 46 REIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125 (459)
Q Consensus 46 ~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g 125 (459)
.+++++|+++|++++..+..|.++++ |+.+++++|++.|++. + .+++++|+......
T Consensus 32 ~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~---~------~~~~~~a~~~~~~~--------- 88 (327)
T 1sw6_A 32 HDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFP---E------IQEMPTSLNNDSSN--------- 88 (327)
T ss_dssp TTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC----------------------------------
T ss_pred CchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCC---c------cccchHhhhccccc---------
Confidence 35688888899999999999999987 9999999999999732 1 23343333221000
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCcc-CCCCCcc
Q psy2184 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV-QDSSGYS 204 (459)
Q Consensus 126 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 204 (459)
.-........+..|.++..+..+++++|++ .+.+++. .+..|.|
T Consensus 89 -~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~----------------------------------~g~dvn~~~d~~g~T 133 (327)
T 1sw6_A 89 -RNSEGGSSNQQQQHVSFDSLLQEVNDAFPN----------------------------------TQLNLNIPVDEHGNT 133 (327)
T ss_dssp ----------------CHHHHHHHHHHHCTT----------------------------------SCCCSCSCCSTTCCC
T ss_pred -ccccccCCccchhHHHHHhhHHHHHHHHHh----------------------------------cCCCcccccCCCCCc
Confidence 000000001112233333333344444322 2333344 3444445
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCCcccccCCCCCHhhHHHH-
Q psy2184 205 ALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGN---VDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ- 280 (459)
Q Consensus 205 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~- 280 (459)
|||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+ .++++.|++.+.. +++..+..|.||||+|+.
T Consensus 134 pLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~--~~~~~d~~g~tpLh~A~~~ 211 (327)
T 1sw6_A 134 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP--CLILEDSMNRTILHHIIIT 211 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG--GGGEECTTCCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc--cccCCCCCCCCHHHHHHHH
Confidence 5555555555555555555555555555555555555555544 3344444443321 344445555555555555
Q ss_pred ---cCCHHHHHHHHhC--------------------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhh
Q psy2184 281 ---YGHTPVVSQLLEH--------------------SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337 (459)
Q Consensus 281 ---~~~~~~~~~Ll~~--------------------g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~ 337 (459)
.|+.+++++|++. |++++.++..|.|||+.|+. +++|++...
T Consensus 212 ~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~~--------- 276 (327)
T 1sw6_A 212 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANML--------- 276 (327)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHHTT---------
T ss_pred ccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhCC---------
Confidence 4555555555544 88888899999999999885 788887631
Q ss_pred cccCCCCCChhHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CHHHHHHHcC
Q psy2184 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCG 387 (459)
Q Consensus 338 ~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-t~L~~A~~~~ 387 (459)
+..+..|.||||+|+..|+.+++++|+++|++++.++..| ||||+|+.+|
T Consensus 277 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 2345678899999999999999999999999999999999 9999998754
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=6e-34 Score=244.21 Aligned_cols=210 Identities=24% Similarity=0.194 Sum_probs=162.7
Q ss_pred CCCchHHHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCC-----CCCCCCCCcH
Q psy2184 65 KGSSPLHLAAWTGNVDIVRVLLCH-GPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDP-----TIRNSRHETA 138 (459)
Q Consensus 65 ~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~-----~~~~~~~~t~ 138 (459)
.|.||||+|+..|+.+++++|++. |+ +++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGC---EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCS---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCC---CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH
Confidence 478999999999999999999998 88 78888999999999999999999999999999987 6678899999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHH
Q psy2184 139 LDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIV 218 (459)
Q Consensus 139 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 218 (459)
||+|+..++.+++++|++.+......... .......+..+..|.||||.|+..|+.+++
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~---------------------~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 137 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVSARATG---------------------SVFHYRPHNLIYYGEHPLSFAACVGSEEIV 137 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCS---------------------GGGSCCTTCSCCCCSSHHHHHHHHTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcccCC---------------------cceeecccccccCCCCHHHHHHHcCCHHHH
Confidence 99999999999999999876553110000 000112233455777888888888888888
Q ss_pred HHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHH----HHHHhCCCCCCC---cccccCCCCCHhhHHHHcCCHHHHHHHH
Q psy2184 219 ELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV----RVLLCHGPSVPN---VNLMTKDNETALHCAAQYGHTPVVSQLL 291 (459)
Q Consensus 219 ~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~----~~Ll~~~~~~~~---~~~~~~~g~t~L~~a~~~~~~~~~~~Ll 291 (459)
++|+++|++++..|..|.||||+|+..++.+++ ++|++++++... .+..+..|.||||+|+..|+.+++++|+
T Consensus 138 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll 217 (232)
T 2rfa_A 138 RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217 (232)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 888888888887788888888888888887776 777777763210 1456677777777777777777777777
Q ss_pred hCCCCCC
Q psy2184 292 EHSCDPT 298 (459)
Q Consensus 292 ~~g~~~~ 298 (459)
++|+...
T Consensus 218 ~~g~~~~ 224 (232)
T 2rfa_A 218 QKRKHIA 224 (232)
T ss_dssp HHHHHC-
T ss_pred hcCccch
Confidence 7765543
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.2e-35 Score=255.44 Aligned_cols=216 Identities=24% Similarity=0.234 Sum_probs=186.9
Q ss_pred cCCCCCccHHHHHHHcCCHHHHHHHHhCCC----CCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCC
Q psy2184 197 VQDSSGYSALHHAALNGHKEIVELLLTNEA----STNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNE 272 (459)
Q Consensus 197 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~ 272 (459)
..+..|.||||.|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|+ +++..+..|.
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~ 79 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC---DPELRDFRGN 79 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC---CSCCCCTTCC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCC
Confidence 467889999999999999999999988765 688899999999999999999999999999997 6777889999
Q ss_pred CHhhHHHHcCCHHHHHHHHhCCCC------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCC-CCC
Q psy2184 273 TALHCAAQYGHTPVVSQLLEHSCD------PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTL-FPA 345 (459)
Q Consensus 273 t~L~~a~~~~~~~~~~~Ll~~g~~------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~-~~~ 345 (459)
||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|++.+..+. ..+. .|.
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------~~~~~~g~ 152 (236)
T 1ikn_D 80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-------AQEPCNGR 152 (236)
T ss_dssp CHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-------CCCTTTCC
T ss_pred CHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-------CCCCCCCC
Confidence 999999999999999999999876 45677889999999999999999999999987652 2232 678
Q ss_pred ChhHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCc--ccccCCCCHHHHHhcCCCC
Q psy2184 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLR--IIDSKHNTVLDLLKQFPPH 422 (459)
Q Consensus 346 ~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll~~ga~~~--~~~~~g~t~l~~a~~~~~~ 422 (459)
||||+|+..|+.+++++|+++|++++..+..| ||||+|+.+++.+++++|+++|+++. ..+..|.||.+.+.+....
T Consensus 153 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~ 232 (236)
T 1ikn_D 153 TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEF 232 (236)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcccccc
Confidence 99999999999999999999999999999999 99999999999999999999999876 8899999999888776554
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=5e-33 Score=232.92 Aligned_cols=193 Identities=24% Similarity=0.296 Sum_probs=153.6
Q ss_pred CCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2184 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAA 143 (459)
Q Consensus 64 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~ 143 (459)
..+.||||.|+..|+.+.++.|++.+.. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTY--QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG 80 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 5678999999999999999999988763 57778889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHh
Q psy2184 144 QYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLT 223 (459)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~ 223 (459)
..++.+++++|++.. +.+++..+..|.||||.|+..++.+++++|++
T Consensus 81 ~~~~~~~~~~Ll~~~---------------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 127 (201)
T 3hra_A 81 AQGRTEILAYMLKHA---------------------------------TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE 127 (201)
T ss_dssp HTTCHHHHHHHHHHS---------------------------------CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcc---------------------------------CcccccccCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 999999999888542 33456667777788888888888888888877
Q ss_pred CC-CCCcccCCCCCcHHHHHHHcCC-----HHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCC
Q psy2184 224 NE-ASTNIVDTKGSSPLHLAAWTGN-----VDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294 (459)
Q Consensus 224 ~~-~~~~~~~~~~~t~L~~a~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g 294 (459)
.| ++++..+..|.||||+|+..++ .+++++|+++|+ +++..+..|.||||+|+..|+.+++++|+++|
T Consensus 128 ~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga---~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 128 DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA---DQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCC---CCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 77 7777777777777777777766 677777777765 45556666777777777777777777776654
No 45
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5.3e-33 Score=238.33 Aligned_cols=197 Identities=28% Similarity=0.356 Sum_probs=160.3
Q ss_pred CCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChH
Q psy2184 101 DNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPL 179 (459)
Q Consensus 101 ~~~t~L~~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (459)
.|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.+....
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~----------------- 64 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV----------------- 64 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-----------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhc-----------------
Confidence 488999999999999999999998 99999999999999999999999999999998765431
Q ss_pred HHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCC-------------CCCcHHHHHHHcC
Q psy2184 180 HLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDT-------------KGSSPLHLAAWTG 246 (459)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-------------~~~t~L~~a~~~~ 246 (459)
....+..+..|.||||.|+..|+.+++++|++.|++++..+. .|.||||+|+..|
T Consensus 65 ------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 132 (232)
T 2rfa_A 65 ------------FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG 132 (232)
T ss_dssp ------------GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHT
T ss_pred ------------cccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcC
Confidence 112355677899999999999999999999999999988765 5777777777777
Q ss_pred CHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHH----HHHHhCCCCC------CCCCCCCCcHHHHHHHcCC
Q psy2184 247 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVV----SQLLEHSCDP------TIRNSRHETALDLAAQYGR 316 (459)
Q Consensus 247 ~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~----~~Ll~~g~~~------~~~~~~~~~~l~~a~~~~~ 316 (459)
+.+++++|+++|+ +++..+..|.||||+|+..++.+++ ++|+++|+++ +.++..|.|||++|+..|+
T Consensus 133 ~~~~v~~Ll~~ga---~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~ 209 (232)
T 2rfa_A 133 SEEIVRLLIEHGA---DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209 (232)
T ss_dssp CHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred CHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence 7777777777776 5666677777777777777777766 7777777766 3667777777777777777
Q ss_pred HHHHHHHHhcCCc
Q psy2184 317 LETVDTLVRTHPG 329 (459)
Q Consensus 317 ~~~~~~Ll~~~~~ 329 (459)
.+++++|+++++.
T Consensus 210 ~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 210 IVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc
Confidence 7777777776543
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.2e-32 Score=230.49 Aligned_cols=192 Identities=27% Similarity=0.397 Sum_probs=179.0
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCC
Q psy2184 13 GKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 92 (459)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~ 92 (459)
.+.+.|+.|+..|+.+.|++|++.+ +.+++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-- 63 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDT------------------TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA-- 63 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCT------------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--
T ss_pred ccccHHHHHHHhccHHHHHHHHHcC------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--
Confidence 3668899999999999999999875 56888999999999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccC
Q psy2184 93 PNVNLMTKDNETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQS 171 (459)
Q Consensus 93 ~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll-~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 171 (459)
+++..+..|.||||+|+..|+.+++++|+ ..+++++..+..|.||||+|+..++.+++++|++.+.
T Consensus 64 -~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------ 130 (201)
T 3hra_A 64 -DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR------------ 130 (201)
T ss_dssp -CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC------------
T ss_pred -CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC------------
Confidence 78888999999999999999999999999 6688999999999999999999999999999987641
Q ss_pred CCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCC-----HHHHHHHHhCCCCCcccCCCCCcHHHHHHHcC
Q psy2184 172 TLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGH-----KEIVELLLTNEASTNIVDTKGSSPLHLAAWTG 246 (459)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~ 246 (459)
.+++..+..|.||||.|+..++ .+++++|++.|++++..+..|.|||++|+..|
T Consensus 131 ---------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 189 (201)
T 3hra_A 131 ---------------------EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG 189 (201)
T ss_dssp ---------------------CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred ---------------------CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC
Confidence 4567788999999999999998 99999999999999999999999999999999
Q ss_pred CHHHHHHHHhCC
Q psy2184 247 NVDIVRVLLCHG 258 (459)
Q Consensus 247 ~~~~~~~Ll~~~ 258 (459)
+.+++++|+++|
T Consensus 190 ~~~~~~~Ll~~G 201 (201)
T 3hra_A 190 YTEISKILAQYN 201 (201)
T ss_dssp CHHHHHHHHTCC
T ss_pred CHhHHHHHHhcC
Confidence 999999999875
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=8.4e-33 Score=222.19 Aligned_cols=158 Identities=35% Similarity=0.531 Sum_probs=121.1
Q ss_pred HHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCC
Q psy2184 16 QDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNV 95 (459)
Q Consensus 16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~ 95 (459)
..|+.||+.|++++|++|++. |+++|.+|..|.||||+|+..++.+++++|++.|+ ++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~-------------------Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga---d~ 63 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN-------------------GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA---DV 63 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CT
T ss_pred HHHHHHHHcCCHHHHHHHHHC-------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc---ch
Confidence 358888888888888888775 67788888888888888888888888888888888 67
Q ss_pred CCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCC
Q psy2184 96 NLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFP 175 (459)
Q Consensus 96 ~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 175 (459)
+.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.
T Consensus 64 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~------------------ 125 (169)
T 4gpm_A 64 NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK------------------ 125 (169)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------------------
T ss_pred hhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------------------
Confidence 77788888888888888888888888888888888888888888888888887777777654
Q ss_pred CChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCc
Q psy2184 176 ASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTN 229 (459)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~ 229 (459)
+.+++.++..|.|||++|+..|+.+++++|+++|++++
T Consensus 126 ----------------gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 126 ----------------GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp ----------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred ----------------CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 44456667777777777777777777777777777665
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=3e-33 Score=245.93 Aligned_cols=232 Identities=19% Similarity=0.189 Sum_probs=165.0
Q ss_pred CCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhc----CCCCCCCC-CCCCCCccHHHHHHHc---CCHHHHHHHHHCCCC
Q psy2184 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH----GPSVPNVN-LMTKDNETALHCAAQY---GHTPVVSQLLEHSCD 127 (459)
Q Consensus 56 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~-~~~~~~~t~L~~A~~~---~~~~iv~~Ll~~g~~ 127 (459)
++..+..|..|.||||+|+..|+.++|+.|++. ++++...+ ..+..|.||||+|+.. |+.+++++|++.|++
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~ 82 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK 82 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence 445566789999999999999999999888874 44221111 3578999999999987 999999999999865
Q ss_pred C-------C----CCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCc
Q psy2184 128 P-------T----IRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196 (459)
Q Consensus 128 ~-------~----~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (459)
+ + ..+..|.||||+|+..|+.+++++|++.+.......... ........
T Consensus 83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~--------------------~~~~~~~~ 142 (273)
T 2pnn_A 83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD--------------------FFKKTKGR 142 (273)
T ss_dssp TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSG--------------------GGSSCSSS
T ss_pred ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccc--------------------cccccccc
Confidence 3 2 256789999999999999999999998755431100000 00001122
Q ss_pred cCCCCCccHHHHHHHcCCHHHHHHHHh---CCCCCcccCCCCCcHHHHHHHcCC---------HHHHHHHHhCCCCCCC-
Q psy2184 197 VQDSSGYSALHHAALNGHKEIVELLLT---NEASTNIVDTKGSSPLHLAAWTGN---------VDIVRVLLCHGPSVPN- 263 (459)
Q Consensus 197 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~t~L~~a~~~~~---------~~~~~~Ll~~~~~~~~- 263 (459)
..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+ .+++++|+++|+++..
T Consensus 143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~ 222 (273)
T 2pnn_A 143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222 (273)
T ss_dssp CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccc
Confidence 333478999999999999999999999 899999999999999999999887 7888899988863210
Q ss_pred ---cccccCCCCCHhhHHHHcCCHHHHHHHHhCCC-CCCCCCCCCCcH
Q psy2184 264 ---VNLMTKDNETALHCAAQYGHTPVVSQLLEHSC-DPTIRNSRHETA 307 (459)
Q Consensus 264 ---~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~~~~~ 307 (459)
++..+..|.||||+|+..|+.+++++|+++|+ ++......+.+|
T Consensus 223 ~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence 13477888999999999999999999999888 666555554443
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=7.7e-32 Score=216.59 Aligned_cols=155 Identities=41% Similarity=0.570 Sum_probs=110.2
Q ss_pred chHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2184 68 SPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR 147 (459)
Q Consensus 68 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~ 147 (459)
+.|+.||+.|+.++|++|++.|+ +++.+|..|.|||++|+..++.+++++|++.|++++.++..|.||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Ga---dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGA---DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence 46778888888888888888887 677778888888888888888888888888888887777777777777777777
Q ss_pred HHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCC
Q psy2184 148 LETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAS 227 (459)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~ 227 (459)
.+++++|++. +.+++.++..|.||||+|+..|+.+++++|++.|++
T Consensus 83 ~~~v~~Ll~~----------------------------------gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad 128 (169)
T 4gpm_A 83 KEVVKLLISK----------------------------------GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128 (169)
T ss_dssp HHHHHHHHHT----------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHC----------------------------------cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7777777553 334455666666666666666666666666666666
Q ss_pred CcccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy2184 228 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGP 259 (459)
Q Consensus 228 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~ 259 (459)
++.+|..|.|||++|+..|+.+++++|+++|+
T Consensus 129 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 160 (169)
T 4gpm_A 129 VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160 (169)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 66666666666666666666666666666665
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=3.2e-33 Score=243.32 Aligned_cols=200 Identities=24% Similarity=0.256 Sum_probs=171.8
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCc----CCCCCCchHHHHHhc---CCHHHHHHHH
Q psy2184 14 KDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNI----VDTKGSSPLHLAAWT---GNVDIVRVLL 86 (459)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~t~L~~A~~~---g~~~~v~~Ll 86 (459)
+.+.|+.|+..|+.+.|+.+++. |++.|++++. .|..|.||||+|+.. |+.+++++|+
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~---------------l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll 66 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEY---------------LRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLL 66 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHH---------------HHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHH
T ss_pred CccHHHHHHHcCCHHHHHHHHHH---------------HHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHH
Confidence 46789999999999987666653 4556889998 899999999999999 9999999999
Q ss_pred hcCCCCCCCC--------CCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-------------CCcHHHHHHHc
Q psy2184 87 CHGPSVPNVN--------LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR-------------HETALDLAAQY 145 (459)
Q Consensus 87 ~~g~~~~~~~--------~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~-------------~~t~l~~a~~~ 145 (459)
+.|++..... ..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..
T Consensus 67 ~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 146 (256)
T 2etb_A 67 QIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146 (256)
T ss_dssp HHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT
T ss_pred hcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHc
Confidence 9998542221 23467999999999999999999999999999999886 99999999999
Q ss_pred CCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHH--cCCHH-------
Q psy2184 146 GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAAL--NGHKE------- 216 (459)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~--~~~~~------- 216 (459)
|+.+++++|++.. ..+.+++..+..|.||||+|+. .++.+
T Consensus 147 ~~~~~v~~Ll~~~-------------------------------~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~ 195 (256)
T 2etb_A 147 KQWDVVTYLLENP-------------------------------HQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195 (256)
T ss_dssp TCHHHHHHHHHCS-------------------------------SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred CCHHHHHHHHhcc-------------------------------ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence 9999999998721 0355678889999999999998 78888
Q ss_pred HHHHHHhCCCCC-------cccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy2184 217 IVELLLTNEAST-------NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGP 259 (459)
Q Consensus 217 ~~~~Ll~~~~~~-------~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~ 259 (459)
++++|++.|+++ +..|..|.||||+|+..|+.+++++|++++.
T Consensus 196 iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp HHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 999999998888 7788888888888888888888888888775
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.2e-32 Score=239.72 Aligned_cols=200 Identities=21% Similarity=0.209 Sum_probs=137.0
Q ss_pred CCCchHHHHHhcCCHH----HHHHHHhcCCCCCCCCC----CCCCCccHHHHHHHc---CCHHHHHHHHHCCCCCCCC--
Q psy2184 65 KGSSPLHLAAWTGNVD----IVRVLLCHGPSVPNVNL----MTKDNETALHCAAQY---GHTPVVSQLLEHSCDPTIR-- 131 (459)
Q Consensus 65 ~~~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~----~~~~~~t~L~~A~~~---~~~~iv~~Ll~~g~~~~~~-- 131 (459)
.|.||||.|+..|+.+ ++++|++.|+ +++. .+..|.||||+|+.. |+.+++++|++.|++++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~---~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 77 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSK---YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP 77 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTC---CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCC---CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh
Confidence 3789999999999997 6678888999 6776 789999999999999 9999999999999887643
Q ss_pred ---------CCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCC-
Q psy2184 132 ---------NSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSS- 201 (459)
Q Consensus 132 ---------~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 201 (459)
|..|.||||+|+..|+.+++++|++.+.. ++..+..
T Consensus 78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----------------------------------~~~~~~~~ 123 (256)
T 2etb_A 78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD----------------------------------VHLRACGR 123 (256)
T ss_dssp GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC----------------------------------TTCCCCSG
T ss_pred hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC----------------------------------CCcccccc
Confidence 36799999999999999999999886543 3444433
Q ss_pred ------------CccHHHHHHHcCCHHHHHHHHh---CCCCCcccCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCCc
Q psy2184 202 ------------GYSALHHAALNGHKEIVELLLT---NEASTNIVDTKGSSPLHLAAW--TGNVDIVRVLLCHGPSVPNV 264 (459)
Q Consensus 202 ------------~~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~t~L~~a~~--~~~~~~~~~Ll~~~~~~~~~ 264 (459)
|.||||+|+..|+.+++++|++ .|++++..|..|.||||+|+. .++.+..+.+
T Consensus 124 ~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~---------- 193 (256)
T 2etb_A 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALV---------- 193 (256)
T ss_dssp GGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH----------
T ss_pred cccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHH----------
Confidence 5555555555555555555555 455555555555555555554 4444400000
Q ss_pred ccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch
Q psy2184 265 NLMTKDNETALHCAAQYGHTPVVSQLLEHSCDP-------TIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 330 (459)
Q Consensus 265 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~-------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~ 330 (459)
.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++++...
T Consensus 194 -------------------~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 194 -------------------IHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp -------------------HHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 01555555555555 555666666666666666666666666655443
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=9.6e-33 Score=242.67 Aligned_cols=213 Identities=21% Similarity=0.210 Sum_probs=169.2
Q ss_pred CCccCCCCCccHHHHHHHcCCHHHHHHHHh----CCCCCc----ccCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCC
Q psy2184 194 GANVQDSSGYSALHHAALNGHKEIVELLLT----NEASTN----IVDTKGSSPLHLAAWT---GNVDIVRVLLCHGPSVP 262 (459)
Q Consensus 194 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~----~~~~~~----~~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~ 262 (459)
..+..+..|.|+||.|+..|+.++++.|++ .+.+++ ..+..|.||||+|+.. |+.+++++|++.+++..
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~ 84 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD 84 (273)
T ss_dssp ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT
T ss_pred cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc
Confidence 445678899999999999999998888876 566655 3578899999999987 99999999999875321
Q ss_pred --------CcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCCCCCC--------------CCCcHHHHHHHcCCHHHH
Q psy2184 263 --------NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS--------------RHETALDLAAQYGRLETV 320 (459)
Q Consensus 263 --------~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~--------------~~~~~l~~a~~~~~~~~~ 320 (459)
.....+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++
T Consensus 85 ~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 164 (273)
T 2pnn_A 85 SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164 (273)
T ss_dssp CHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred chhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence 1222456899999999999999999999999999999887 799999999999999999
Q ss_pred HHHHh---cCCchHHHhhhhcccCCCCCChhHHHHhcCc---------HHHHHHHHHcCCCCC-------CCCCCC-CHH
Q psy2184 321 DTLVR---THPGLIQAYNARAQSTLFPASPLHLASRNGH---------RSVVARLLQAGLDVN-------IRTASG-TAL 380 (459)
Q Consensus 321 ~~Ll~---~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~~-t~L 380 (459)
++|++ .+..+ ...+..|.||||+|+..++ .+++++|+++|++++ .++..| |||
T Consensus 165 ~~Ll~~~~~gad~-------~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL 237 (273)
T 2pnn_A 165 KFLLQNSWQPADI-------SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPL 237 (273)
T ss_dssp HHHHHCSSCCCCT-------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH
T ss_pred HHHHhcccCCCCc-------eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHH
Confidence 99999 66654 2345578899999999887 799999999999997 478888 999
Q ss_pred HHHHHcCCHHHHHHHHHCCC-CCcccccCCCCHH
Q psy2184 381 HEAALCGKLEVVKTLLEHGA-DLRIIDSKHNTVL 413 (459)
Q Consensus 381 ~~A~~~~~~~i~~~Ll~~ga-~~~~~~~~g~t~l 413 (459)
|+|+..++.+++++|+++|+ |+......+.+|-
T Consensus 238 ~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 238 ALAASSGKIGVLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence 99999999999999999999 8888877776653
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.6e-31 Score=233.31 Aligned_cols=200 Identities=25% Similarity=0.271 Sum_probs=168.5
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCC----CCCCchHHHHH---hcCCHHHHHHHH
Q psy2184 14 KDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVD----TKGSSPLHLAA---WTGNVDIVRVLL 86 (459)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~t~L~~A~---~~g~~~~v~~Ll 86 (459)
+.+.|+.|++.|+.+.|+.|++. |++.|++++..+ ..|.||||+|+ ..|+.+++++|+
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~---------------l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll 69 (260)
T 3jxi_A 5 NRPILFDIVSRGSPDGLEGLLSF---------------LLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69 (260)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHH---------------HHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHH
T ss_pred hHHHHHHHHHhCCHHHHHHHHHH---------------HHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHH
Confidence 56789999999999988877763 344577777555 67999999999 779999999999
Q ss_pred hcCCCCC--------CCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC--------------CCCCcHHHHHHH
Q psy2184 87 CHGPSVP--------NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN--------------SRHETALDLAAQ 144 (459)
Q Consensus 87 ~~g~~~~--------~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~--------------~~~~t~l~~a~~ 144 (459)
+.|++.. ..+..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus 70 ~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~ 149 (260)
T 3jxi_A 70 DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC 149 (260)
T ss_dssp HHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHH
T ss_pred HhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHH
Confidence 9986421 244555689999999999999999999999999999998 689999999999
Q ss_pred cCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCC---------H
Q psy2184 145 YGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGH---------K 215 (459)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~---------~ 215 (459)
.|+.+++++|++.+ ..+.+++.++..|.||||+|+..++ .
T Consensus 150 ~g~~~~v~~Ll~~~-------------------------------~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~ 198 (260)
T 3jxi_A 150 TNQPHIVHYLTENG-------------------------------HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVT 198 (260)
T ss_dssp TTCHHHHHHHHHCS-------------------------------SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHH
T ss_pred cCCHHHHHHHHhcc-------------------------------ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHH
Confidence 99999999998721 0255678889999999999998777 6
Q ss_pred HHHHHHHhCCCCC-------cccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy2184 216 EIVELLLTNEAST-------NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGP 259 (459)
Q Consensus 216 ~~~~~Ll~~~~~~-------~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~ 259 (459)
+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+++++
T Consensus 199 ~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 199 KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence 8999999988887 5678888888888888888888888888775
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=9.7e-31 Score=228.28 Aligned_cols=133 Identities=25% Similarity=0.248 Sum_probs=115.3
Q ss_pred CccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccC--------------CCCCcHHHHHHHcCCHHHHHHHHh---C
Q psy2184 195 ANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVD--------------TKGSSPLHLAAWTGNVDIVRVLLC---H 257 (459)
Q Consensus 195 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~t~L~~a~~~~~~~~~~~Ll~---~ 257 (459)
.+..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++ .
T Consensus 86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 165 (260)
T 3jxi_A 86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165 (260)
T ss_dssp BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 34456689999999999999999999999999999988 578999999999999999999999 6
Q ss_pred CCCCCCcccccCCCCCHhhHHHHcCC---------HHHHHHHHhCCCCC-------CCCCCCCCcHHHHHHHcCCHHHHH
Q psy2184 258 GPSVPNVNLMTKDNETALHCAAQYGH---------TPVVSQLLEHSCDP-------TIRNSRHETALDLAAQYGRLETVD 321 (459)
Q Consensus 258 ~~~~~~~~~~~~~g~t~L~~a~~~~~---------~~~~~~Ll~~g~~~-------~~~~~~~~~~l~~a~~~~~~~~~~ 321 (459)
++ +++..+..|.||||+|+..++ .+++++|+++|+++ +..+..|.||||+|+..|+.++++
T Consensus 166 ga---~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 166 QA---DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242 (260)
T ss_dssp CC---CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CC---CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence 66 677888889999999998777 68899999998887 668888999999999999999999
Q ss_pred HHHhcCCch
Q psy2184 322 TLVRTHPGL 330 (459)
Q Consensus 322 ~Ll~~~~~~ 330 (459)
+|+++++..
T Consensus 243 ~Ll~~g~~~ 251 (260)
T 3jxi_A 243 HIIRREIAD 251 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhCCCc
Confidence 888876654
No 55
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=7.9e-34 Score=257.14 Aligned_cols=272 Identities=18% Similarity=0.147 Sum_probs=166.0
Q ss_pred chHHHHHh-cCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHH
Q psy2184 68 SPLHLAAW-TGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDP---TIRNSRHETALDLAA 143 (459)
Q Consensus 68 t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~---~~~~~~~~t~l~~a~ 143 (459)
+++++|.. .++.++++++++.|.+ +.||||+|++.|+.+++++|++.|+.. ...+..+.||||+|+
T Consensus 67 l~~~~a~~~~~~~~~~~~l~~~g~~----------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa 136 (376)
T 2aja_A 67 LCLYYAHYNRNAKQLWSDAHKKGIK----------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 136 (376)
T ss_dssp HHHHHHHTTTTCTTHHHHHHHHTCC----------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCC----------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence 45555554 3566666777666542 247777777777777777777776622 123344566777777
Q ss_pred HcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHh
Q psy2184 144 QYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLT 223 (459)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~ 223 (459)
..|+.+++++|++.+++.... +..... .||||.|+..|+.+++++|++
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~-------------------------------~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~ 184 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMA-------------------------------MIQAEN-YHAFRLAAENGHLHVLNRLCE 184 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHH-------------------------------HHSHHH-HHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCcccc-------------------------------ccCCCC-CCHHHHHHHCCCHHHHHHHHH
Confidence 777777777777665321100 001111 678888888888888888888
Q ss_pred CCCCCcc--cCCCCCcHHHHHH-HcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCCCC
Q psy2184 224 NEASTNI--VDTKGSSPLHLAA-WTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIR 300 (459)
Q Consensus 224 ~~~~~~~--~~~~~~t~L~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~ 300 (459)
+|++++. .+..|.||||+|+ .+|+.+++++|++.++ .|.|||++|+..|+.+++++|+++|++++..
T Consensus 185 ~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga----------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~ 254 (376)
T 2aja_A 185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV----------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 254 (376)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH----------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHH
T ss_pred cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC----------ccchHHHHHHHCCCHHHHHHHHhcCcccccc
Confidence 8877665 6667778888888 8888888888877552 2678888888888888888888887765443
Q ss_pred CCCCCcHHHHHHHcCCHHHH------------HHHHhcCCchHHHhhhhcccCCCCCChhHHHHhcCcHHHHHHHHH---
Q psy2184 301 NSRHETALDLAAQYGRLETV------------DTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ--- 365 (459)
Q Consensus 301 ~~~~~~~l~~a~~~~~~~~~------------~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~--- 365 (459)
+ ++++.|+.+|+.+++ +.++..+ ..+..+.+++|++
T Consensus 255 ~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~-------------------------~~~~~~~~~~Ll~~~~ 305 (376)
T 2aja_A 255 H----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN-------------------------DEVLLDDIRFLLSIPG 305 (376)
T ss_dssp H----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC-------------------------CGGGHHHHHHHHTSTT
T ss_pred c----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc-------------------------hhhHHHHHHHHHhChh
Confidence 2 255666666665533 3333322 1223566677665
Q ss_pred ------cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCCHHHHHhcCCCCchhh
Q psy2184 366 ------AGLDVNIRTASGTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQFPPHAVHD 426 (459)
Q Consensus 366 ------~g~~~~~~~~~~t~L~~A~~~~~~~i~~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~ 426 (459)
.|++++.. .||||+|+..|+.+++++|++.| ..++..|.|++++|...+-.+...
T Consensus 306 vk~l~~~g~~~n~~---~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~ 366 (376)
T 2aja_A 306 IKALAPTATIPGDA---NELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRA 366 (376)
T ss_dssp TGGGSSCCSSTTCC---CHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC-----------------
T ss_pred hhhhhccCCCCCCc---cHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHH
Confidence 35554422 28999999999999999999874 778899999999999887765443
No 56
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=9.3e-30 Score=211.09 Aligned_cols=163 Identities=21% Similarity=0.228 Sum_probs=136.0
Q ss_pred CCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy2184 59 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETA 138 (459)
Q Consensus 59 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~ 138 (459)
++.+|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 104 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFD---KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP 104 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcc---ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 45678889999999999999999999999888 677788889999999999999999999999999988888888888
Q ss_pred HHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHH
Q psy2184 139 LDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIV 218 (459)
Q Consensus 139 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 218 (459)
||+|+..++.+++++|++. +.+++..+..|.||||+|+..++.+++
T Consensus 105 L~~A~~~~~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v 150 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEH----------------------------------GANVNDRNLEGETPLIVASKYGRSEIV 150 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHT----------------------------------TCCSSCCCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHC----------------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 8888888888888888764 344566777788888888888888888
Q ss_pred HHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy2184 219 ELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258 (459)
Q Consensus 219 ~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~ 258 (459)
++|++.|++++..+..|.||+++|+..|+.+++++|++++
T Consensus 151 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 151 KKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 8888888888888888888888888888888888887654
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=5.8e-30 Score=224.44 Aligned_cols=190 Identities=27% Similarity=0.319 Sum_probs=125.2
Q ss_pred CCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHH-
Q psy2184 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC-DPTIRNSRHETALDLAA- 143 (459)
Q Consensus 66 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~-~~~~~~~~~~t~l~~a~- 143 (459)
..+++|.|+..|+++.++.+++.+.+. .++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~-~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDY-VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL 154 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHH-HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhh-cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence 456888888889999988888776532 377788889999999999999999999999988 88888888888888887
Q ss_pred ----HcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHH
Q psy2184 144 ----QYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVE 219 (459)
Q Consensus 144 ----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 219 (459)
..++.+++++|++.+ ...+..+..|.||||+|+..|+.++++
T Consensus 155 ~~~~~~~~~~~v~~Ll~~g----------------------------------~~~~~~~~~g~tpLh~A~~~g~~~~v~ 200 (276)
T 4hbd_A 155 ATLKTQDDIETVLQLFRLG----------------------------------NINAKASQAGQTALMLAVSHGRVDVVK 200 (276)
T ss_dssp CCCCSHHHHHHHHHHHHHS----------------------------------CTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred HHhhhhhhHHHHHHHHHcC----------------------------------CCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 445555566555432 222334445555555555555555555
Q ss_pred HHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhC
Q psy2184 220 LLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLC-HGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 293 (459)
Q Consensus 220 ~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~ 293 (459)
+|++.|++++..|..|.||||+|+..|+.+++++|++ .|+ +++..+..|.|||++|+..|+.+++++|+++
T Consensus 201 ~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~ga---d~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 201 ALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSC---DISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC---CCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 5555555555555555555555555555555555555 443 3444455555555555555555555555544
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=1.4e-29 Score=206.07 Aligned_cols=156 Identities=29% Similarity=0.323 Sum_probs=82.8
Q ss_pred chHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2184 68 SPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR 147 (459)
Q Consensus 68 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~ 147 (459)
||||.|+..|+.+++++|++.++. .++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 4 LSIHQLAAQGELDQLKEHLRKGDN--LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp CCHHHHHHTTCHHHHHHHHTTCSG--GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred hhHHHHHHcCCHHHHHHHHHcCcc--cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 455555555555555555555442 244444555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCC
Q psy2184 148 LETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAS 227 (459)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~ 227 (459)
.+++++|++. +.+++..+..|.||||.|+..++.+++++|++.|++
T Consensus 82 ~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 127 (172)
T 3v30_A 82 TDIVGLLLER----------------------------------DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD 127 (172)
T ss_dssp HHHHHHHHTT----------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHc----------------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 5555555432 223344445555555555555555555555555555
Q ss_pred CcccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy2184 228 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGP 259 (459)
Q Consensus 228 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~ 259 (459)
++..+..|.|||++|+..|+.+++++|+++++
T Consensus 128 ~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (172)
T 3v30_A 128 LTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159 (172)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence 55555555555555555555555555555554
No 59
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=7.7e-29 Score=200.88 Aligned_cols=159 Identities=36% Similarity=0.476 Sum_probs=129.3
Q ss_pred CCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy2184 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 142 (459)
Q Consensus 63 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a 142 (459)
...+.++|++|++.|+.+++++|++.|+ +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGA---DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 3456789999999999999999999988 6777888889999999999999999999999998888888888888888
Q ss_pred HHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHH
Q psy2184 143 AQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222 (459)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll 222 (459)
+..++.+++++|++. +.+++..+..|.||||.|+..++.+++++|+
T Consensus 88 ~~~~~~~~~~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 133 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKN----------------------------------GADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133 (169)
T ss_dssp HHTTCHHHHHHHHHT----------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc----------------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 888888888888764 3345666777888888888888888888888
Q ss_pred hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy2184 223 TNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258 (459)
Q Consensus 223 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~ 258 (459)
++|++++..+..|.|||++|+..|+.+++++|++.|
T Consensus 134 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 888888877778888888888888888888877654
No 60
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=221.64 Aligned_cols=190 Identities=26% Similarity=0.334 Sum_probs=171.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCC
Q psy2184 16 QDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNV 95 (459)
Q Consensus 16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~ 95 (459)
+.++.|+..|+++.++.+++..... .+|..|..|.||||+|+..|+.+++++|++.|+. ++
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~-----------------~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~--~~ 138 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDY-----------------VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVC--KV 138 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHH-----------------HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCC--CT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhh-----------------cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC--cC
Confidence 3456777888888888887765331 2677899999999999999999999999999974 57
Q ss_pred CCCCCCCccHHHHHH-----HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhcc
Q psy2184 96 NLMTKDNETALHCAA-----QYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQ 170 (459)
Q Consensus 96 ~~~~~~~~t~L~~A~-----~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 170 (459)
+..+..|.||||+|+ ..++.+++++|++.|.+.+..+..|.||||+|+..|+.+++++|++.
T Consensus 139 ~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~------------- 205 (276)
T 4hbd_A 139 DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC------------- 205 (276)
T ss_dssp TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-------------
T ss_pred CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhC-------------
Confidence 788999999999999 66889999999999999999999999999999999999999999875
Q ss_pred CCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHh-CCCCCcccCCCCCcHHHHHHHcCCHH
Q psy2184 171 STLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLT-NEASTNIVDTKGSSPLHLAAWTGNVD 249 (459)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~L~~a~~~~~~~ 249 (459)
+.+++.++..|.||||+|+..|+.+++++|++ .|++++..|..|.|||++|+..|+.+
T Consensus 206 ---------------------gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~ 264 (276)
T 4hbd_A 206 ---------------------EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSE 264 (276)
T ss_dssp ---------------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred ---------------------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHH
Confidence 55678889999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHhCC
Q psy2184 250 IVRVLLCHG 258 (459)
Q Consensus 250 ~~~~Ll~~~ 258 (459)
++++|+++.
T Consensus 265 iv~~Ll~~~ 273 (276)
T 4hbd_A 265 IASMLYSRM 273 (276)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcc
Confidence 999999876
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=8.6e-29 Score=200.36 Aligned_cols=158 Identities=27% Similarity=0.304 Sum_probs=139.8
Q ss_pred CCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy2184 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 144 (459)
Q Consensus 65 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~ 144 (459)
.|.||||.|+..|+.+++++|++.|+ +++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQEN---VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSS---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCC---CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 47899999999999999999999998 688889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhC
Q psy2184 145 YGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTN 224 (459)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~ 224 (459)
.++.+++++|++. +.+++..+..|.||||.|+..++.+++++|+++
T Consensus 79 ~~~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 124 (167)
T 3v31_A 79 KGYTDIVKMLLDC----------------------------------GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124 (167)
T ss_dssp HTCHHHHHHHHHH----------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHC----------------------------------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999765 344567778888888888888888888888888
Q ss_pred CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy2184 225 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGP 259 (459)
Q Consensus 225 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~ 259 (459)
|++++..+..|.||+++|+..|+.+++++|++++.
T Consensus 125 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (167)
T 3v31_A 125 GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159 (167)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence 88888888888888888888888888888887754
No 62
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=3.6e-29 Score=203.65 Aligned_cols=169 Identities=25% Similarity=0.294 Sum_probs=150.3
Q ss_pred CccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHH
Q psy2184 102 NETALHCAAQYGHTPVVSQLLEHSCD-PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH 180 (459)
Q Consensus 102 ~~t~L~~A~~~~~~~iv~~Ll~~g~~-~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (459)
+.||||.|+..|+.+++++|++.|.+ ++..+..|.||||+|+..++.+++++|++.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------------------- 58 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW----------------------- 58 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------------------
Confidence 46899999999999999999999887 788899999999999999999999999875
Q ss_pred HHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy2184 181 LASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260 (459)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~ 260 (459)
+.+++..+..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|+
T Consensus 59 -----------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga- 126 (172)
T 3v30_A 59 -----------GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA- 126 (172)
T ss_dssp -----------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred -----------CCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-
Confidence 44567788899999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q psy2184 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETA 307 (459)
Q Consensus 261 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~ 307 (459)
+++..+..|.|||++|+..++.+++++|+++|+++...+..+.+|
T Consensus 127 --~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 127 --DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp --CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred --CccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 677888999999999999999999999999999888888777776
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=2.5e-28 Score=197.82 Aligned_cols=157 Identities=36% Similarity=0.555 Sum_probs=146.0
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCC
Q psy2184 13 GKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 92 (459)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~ 92 (459)
...+.|+.|++.|++++|++|++. |++++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-- 71 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMAN-------------------GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-- 71 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--
T ss_pred cccchHHHHHHcCCHHHHHHHHHC-------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--
Confidence 455789999999999999999987 67888899999999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCC
Q psy2184 93 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST 172 (459)
Q Consensus 93 ~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 172 (459)
+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.
T Consensus 72 -~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------------- 135 (169)
T 2y1l_E 72 -DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN--------------- 135 (169)
T ss_dssp -CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---------------
T ss_pred -CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---------------
Confidence 7788899999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCC
Q psy2184 173 LFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNE 225 (459)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 225 (459)
+.+++..+..|.||++.|+..++.+++++|++.|
T Consensus 136 -------------------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 136 -------------------GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp -------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred -------------------CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 4456778899999999999999999999999875
No 64
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1e-28 Score=198.90 Aligned_cols=157 Identities=28% Similarity=0.394 Sum_probs=107.8
Q ss_pred CCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy2184 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 144 (459)
Q Consensus 65 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~ 144 (459)
...||||.|+..|+.+++++|++.|+ +++..+..|.||||+|+. |+.+++++|++.|++++.++..|.||||+|+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~---~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 79 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNV---NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR 79 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCC---CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCC---CccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 34578888888888888888888887 567777788888888887 88888888888888887777777777777777
Q ss_pred cCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhC
Q psy2184 145 YGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTN 224 (459)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~ 224 (459)
.++.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.
T Consensus 80 ~~~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 125 (162)
T 1ihb_A 80 AGFLDTLQTLLEF----------------------------------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125 (162)
T ss_dssp HTCHHHHHHHHHT----------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc----------------------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 7777777776553 233455555666666666666666666666666
Q ss_pred CCC-CcccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy2184 225 EAS-TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGP 259 (459)
Q Consensus 225 ~~~-~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~ 259 (459)
|++ ++..+..|.|||++|+..|+.+++++|+++|+
T Consensus 126 g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 655 35555556666666666666666666665554
No 65
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=9.4e-29 Score=205.04 Aligned_cols=162 Identities=27% Similarity=0.315 Sum_probs=118.6
Q ss_pred CCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCC
Q psy2184 95 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLF 174 (459)
Q Consensus 95 ~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 174 (459)
++.+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------------- 90 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK----------------- 90 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-----------------
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHC-----------------
Confidence 355678889999999999999999999999888888888888888888888888888887664
Q ss_pred CCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q psy2184 175 PASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVL 254 (459)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~L 254 (459)
+.+++..+..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|
T Consensus 91 -----------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 153 (192)
T 2rfm_A 91 -----------------GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153 (192)
T ss_dssp -----------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred -----------------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 233455666677777777777777777777777777776666667777777776666666666
Q ss_pred HhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhC
Q psy2184 255 LCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 293 (459)
Q Consensus 255 l~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~ 293 (459)
+++|+ +++..+..|.||+++|+..++.+++++|+++
T Consensus 154 l~~ga---~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 154 LELGA---DISARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp HHTTC---CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHCCC---CCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 66665 4555566666666666666666666666654
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.9e-28 Score=197.41 Aligned_cols=158 Identities=28% Similarity=0.422 Sum_probs=145.3
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCC
Q psy2184 14 KDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP 93 (459)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 93 (459)
..+.|+.|+..|+.++|++|++. |++++..+..|.||||+|+. |+.+++++|++.|+
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~-------------------~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~--- 61 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQN-------------------NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA--- 61 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTS-------------------CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTC---
T ss_pred HhhHHHHHHHcCCHHHHHHHHhC-------------------CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCC---
Confidence 45789999999999999999976 67888999999999999999 99999999999999
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCC
Q psy2184 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTL 173 (459)
Q Consensus 94 ~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 173 (459)
+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.+..
T Consensus 62 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------- 128 (162)
T 1ihb_A 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS------------- 128 (162)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC-------------
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC-------------
Confidence 7888899999999999999999999999999999999999999999999999999999999886433
Q ss_pred CCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCC
Q psy2184 174 FPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAS 227 (459)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~ 227 (459)
.++..+..|.|||++|+..++.+++++|+++|++
T Consensus 129 --------------------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 129 --------------------NVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp --------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred --------------------CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 1467788999999999999999999999999974
No 67
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=3.4e-28 Score=199.15 Aligned_cols=97 Identities=32% Similarity=0.504 Sum_probs=48.8
Q ss_pred CCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q psy2184 57 ASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136 (459)
Q Consensus 57 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~ 136 (459)
.+++..+..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~ 106 (179)
T 3f6q_A 30 NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA---RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 106 (179)
T ss_dssp SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Confidence 3444444555555555555555555555555554 3444444555555555555555555555555555555554555
Q ss_pred cHHHHHHHcCCHHHHHHHHh
Q psy2184 137 TALDLAAQYGRLETVDTLVR 156 (459)
Q Consensus 137 t~l~~a~~~~~~~~~~~l~~ 156 (459)
||||+|+..++.+++++|++
T Consensus 107 t~L~~A~~~~~~~~v~~Ll~ 126 (179)
T 3f6q_A 107 VPLHYACFWGQDQVAEDLVA 126 (179)
T ss_dssp CHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHH
Confidence 55555554444444444443
No 68
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=6.5e-28 Score=195.20 Aligned_cols=159 Identities=25% Similarity=0.358 Sum_probs=147.7
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCC
Q psy2184 13 GKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 92 (459)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~ 92 (459)
.+.+.|+.|+..|++++|++|++. |.+++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-- 60 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-------------------ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA-- 60 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-------------------SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-------------------CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC--
Confidence 467889999999999999999987 56788899999999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCC
Q psy2184 93 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST 172 (459)
Q Consensus 93 ~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 172 (459)
+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.
T Consensus 61 -~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------------- 124 (167)
T 3v31_A 61 -DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--------------- 124 (167)
T ss_dssp -CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---------------
T ss_pred -CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---------------
Confidence 7788899999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCC
Q psy2184 173 LFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAS 227 (459)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~ 227 (459)
+.+++..+..|.||+++|+..|+.+++++|++++..
T Consensus 125 -------------------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 125 -------------------GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp -------------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------------------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 455677889999999999999999999999987643
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=8.6e-28 Score=191.29 Aligned_cols=150 Identities=30% Similarity=0.421 Sum_probs=131.6
Q ss_pred CchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2184 67 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG 146 (459)
Q Consensus 67 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~ 146 (459)
.++|+.|++.|+.+++++|++.|++ ++ .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~---~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAP---FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCC---CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCC---CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 5799999999999999999999984 33 5788999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCC
Q psy2184 147 RLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226 (459)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~ 226 (459)
+.+++++|++. +.+++..+..|.||||.|+..++.+++++|+++|+
T Consensus 79 ~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 124 (153)
T 1awc_B 79 HANIVEVLLKH----------------------------------GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124 (153)
T ss_dssp CHHHHHHHHTT----------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hHHHHHHHHHc----------------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999764 44557778888888888888888888888888888
Q ss_pred CCcccCCCCCcHHHHHHHcCCHHHHHHH
Q psy2184 227 STNIVDTKGSSPLHLAAWTGNVDIVRVL 254 (459)
Q Consensus 227 ~~~~~~~~~~t~L~~a~~~~~~~~~~~L 254 (459)
+++..+..|.|||++|+..|+.+++++|
T Consensus 125 ~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 8888888888888888888888888876
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.7e-31 Score=226.89 Aligned_cols=199 Identities=21% Similarity=0.144 Sum_probs=126.7
Q ss_pred HHHHHhCCCCCCcCC---CCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCC
Q psy2184 49 VELLLTNEASTNIVD---TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125 (459)
Q Consensus 49 ~~~l~~~~~~~~~~~---~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g 125 (459)
++.|+++|++++..+ ..+.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+..|+.+++++|++.|
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 77 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN---DPSQPNEEGITALHNAICGANYSIVDFLITAG 77 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 356777777776544 345567888888888888888888887 66777778888888888888888888888888
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCC-CCCcc
Q psy2184 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQD-SSGYS 204 (459)
Q Consensus 126 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (459)
++++..|..|.||||+|+..|+.+++++|++. +.+++..+ ..|.|
T Consensus 78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~----------------------------------ga~~~~~~~~~g~t 123 (229)
T 2vge_A 78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQH----------------------------------GAAIFATTLSDGAT 123 (229)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT----------------------------------TCCTTCCCSSTTCC
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----------------------------------CCCcccccCCCCCC
Confidence 88887777777777777777777777777654 33345544 46677
Q ss_pred HHHHH--HHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcC
Q psy2184 205 ALHHA--ALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYG 282 (459)
Q Consensus 205 ~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~ 282 (459)
||++| +..++.+++++|++.|++++..+..+.++++.++..+.. ++|++.|++. +++..+..|.||||+|+..|
T Consensus 124 pL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~---~~ll~~ga~~-~~~~~d~~G~TpL~~A~~~g 199 (229)
T 2vge_A 124 AFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD---ELSFREGESV-TVLRRDGPEETDWWWAALHG 199 (229)
T ss_dssp TGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTT---BCCBCTTCEE-EEEESSCTTCSSEEEEEETT
T ss_pred HHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcccc---ccCccccccc-cccccCCCcccHHHHHHHcC
Confidence 77776 666677777777776666666666666666543333222 3444444421 24455555666666666666
Q ss_pred CHHHHH
Q psy2184 283 HTPVVS 288 (459)
Q Consensus 283 ~~~~~~ 288 (459)
+.++++
T Consensus 200 ~~~~v~ 205 (229)
T 2vge_A 200 QEGYVP 205 (229)
T ss_dssp EEEEEE
T ss_pred Ccceee
Confidence 555553
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.9e-27 Score=188.26 Aligned_cols=150 Identities=34% Similarity=0.450 Sum_probs=138.5
Q ss_pred CHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCC
Q psy2184 15 DQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPN 94 (459)
Q Consensus 15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 94 (459)
.+.|+.|++.|+.++|++|++.+ ++++ .+..|.||||+|+..|+.+++++|++.|+ +
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g-------------------~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~ 59 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANG-------------------APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV---S 59 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHT-------------------CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTC---C
T ss_pred cHHHHHHHHcCCHHHHHHHHHcC-------------------CCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCC---C
Confidence 36799999999999999999974 4444 47889999999999999999999999999 7
Q ss_pred CCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCC
Q psy2184 95 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLF 174 (459)
Q Consensus 95 ~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 174 (459)
++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.
T Consensus 60 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------------- 122 (153)
T 1awc_B 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY----------------- 122 (153)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------------
T ss_pred CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------------
Confidence 788899999999999999999999999999999999999999999999999999999999875
Q ss_pred CCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHH
Q psy2184 175 PASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221 (459)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L 221 (459)
+.+++..+..|.||+++|+..|+.+++++|
T Consensus 123 -----------------ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 123 -----------------GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp -----------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred -----------------CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 445678889999999999999999999987
No 72
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.8e-31 Score=226.72 Aligned_cols=208 Identities=23% Similarity=0.172 Sum_probs=175.8
Q ss_pred HHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch
Q psy2184 82 VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 161 (459)
Q Consensus 82 v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~ 161 (459)
++.|++.|++....+..+..+.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++.
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~---- 76 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA---- 76 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC----
Confidence 4678899987666666777888999999999999999999999999999999999999999999999999999875
Q ss_pred HHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCCCcHHH
Q psy2184 162 IQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVD-TKGSSPLH 240 (459)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~L~ 240 (459)
+.+++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.|||+
T Consensus 77 ------------------------------ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~ 126 (229)
T 2vge_A 77 ------------------------------GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFE 126 (229)
T ss_dssp ------------------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGG
T ss_pred ------------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHH
Confidence 45568889999999999999999999999999999999986 69999999
Q ss_pred HH--HHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCcHHHHHHHcCC
Q psy2184 241 LA--AWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD--PTIRNSRHETALDLAAQYGR 316 (459)
Q Consensus 241 ~a--~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~--~~~~~~~~~~~l~~a~~~~~ 316 (459)
+| +..|+.+++++|++.|+ +++..+..|.||++.++..... ++|++.|++ ++.++..|.|||++|+.+|+
T Consensus 127 ~A~a~~~~~~~~v~~Ll~~ga---~~~~~~~~~~~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~ 200 (229)
T 2vge_A 127 KCDPYREGYADCATYLADVEQ---SMGLMNSGAVYALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQ 200 (229)
T ss_dssp GCCTTSTTHHHHHHHHHHHHH---HTTTSGGGEEEESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTE
T ss_pred HHHHHhcChHHHHHHHHHcCC---CcccccCCchHHHHHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCC
Confidence 99 99999999999999998 5777788899999966555433 577888988 67789999999999999999
Q ss_pred HHHHHH-HHhcCCc
Q psy2184 317 LETVDT-LVRTHPG 329 (459)
Q Consensus 317 ~~~~~~-Ll~~~~~ 329 (459)
.++++. +++..+.
T Consensus 201 ~~~v~~~~l~~~p~ 214 (229)
T 2vge_A 201 EGYVPRNYFGLFPR 214 (229)
T ss_dssp EEEEEGGGEESSCC
T ss_pred cceeehhhhhhCCC
Confidence 999976 4444444
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=1e-27 Score=196.25 Aligned_cols=160 Identities=23% Similarity=0.261 Sum_probs=112.1
Q ss_pred CCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2184 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAA 143 (459)
Q Consensus 64 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~ 143 (459)
..+.++|+.||..|+.+++++|++.+.. +++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 4567899999999999999999988543 57778888999999999999999999999999988888877777777777
Q ss_pred HcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHh
Q psy2184 144 QYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLT 223 (459)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~ 223 (459)
..++.+++++|++. +.+++..+..|.||||+|+..++.+++++|++
T Consensus 81 ~~~~~~~v~~Ll~~----------------------------------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 126 (179)
T 3f6q_A 81 SHGHRDIVQKLLQY----------------------------------KADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126 (179)
T ss_dssp HTTCHHHHHHHHHT----------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc----------------------------------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 77777777777553 23344555556666666666666666666666
Q ss_pred CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy2184 224 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGP 259 (459)
Q Consensus 224 ~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~ 259 (459)
+|++++..+..|.||+++|+..++.+++++|++.++
T Consensus 127 ~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~ 162 (179)
T 3f6q_A 127 NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162 (179)
T ss_dssp TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 666555555555555555555555555555555555
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=5.5e-28 Score=195.18 Aligned_cols=160 Identities=31% Similarity=0.430 Sum_probs=126.7
Q ss_pred CCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy2184 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 142 (459)
Q Consensus 63 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a 142 (459)
+..+.|+||.|++.|+.+++++|++.+.. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSV--NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCC--CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence 56688999999999999999999986542 5667778889999999999999999999999999998888888888888
Q ss_pred HHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHH
Q psy2184 143 AQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222 (459)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll 222 (459)
+..++.+++++|++. +.+++..+..|.||||+|+..++.+++++|+
T Consensus 83 ~~~~~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 128 (165)
T 3twr_A 83 CSYGHYEVAELLVKH----------------------------------GAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128 (165)
T ss_dssp HHTTCHHHHHHHHHT----------------------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHcCcHHHHHHHHhC----------------------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 888888888888664 3345666677777777777777777777777
Q ss_pred hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy2184 223 TNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGP 259 (459)
Q Consensus 223 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~ 259 (459)
++|++++..+..|.||+++|+. ++.+++++|++.|+
T Consensus 129 ~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 129 QHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp HTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred HcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 7777777777777777777655 67777777776653
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=3.1e-27 Score=188.87 Aligned_cols=152 Identities=24% Similarity=0.369 Sum_probs=108.9
Q ss_pred CHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCC
Q psy2184 15 DQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPN 94 (459)
Q Consensus 15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 94 (459)
.+.|+.|+..|+.++|++|++.. +.+++..+..|.||||+ +..|+.+++++|++.|+ +
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~------------------~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~---~ 60 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRE------------------LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGA---S 60 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTT------------------CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTC---C
T ss_pred chHHHHHHHhCCHHHHHHHHHhh------------------CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCC---C
Confidence 35677777777777777777752 44566677777777777 77777777777777777 5
Q ss_pred CCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCC
Q psy2184 95 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLF 174 (459)
Q Consensus 95 ~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 174 (459)
++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.
T Consensus 61 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------------- 123 (156)
T 1bd8_A 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE----------------- 123 (156)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-----------------
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-----------------
Confidence 666777777777777777777777777777777777777777777777777777777777643
Q ss_pred CCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHh
Q psy2184 175 PASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLT 223 (459)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~ 223 (459)
.+++..+..|.|||++|+..|+.+++++|++
T Consensus 124 ------------------~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 124 ------------------SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp ------------------SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred ------------------cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 2345556666677777777777777776664
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=2e-27 Score=191.89 Aligned_cols=157 Identities=30% Similarity=0.455 Sum_probs=143.7
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCC
Q psy2184 14 KDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP 93 (459)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 93 (459)
+.+.|+.|++.|++++|++|++.. +.+++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 8 ~~~~l~~A~~~g~~~~v~~ll~~~------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--- 66 (165)
T 3twr_A 8 ADRQLLEAAKAGDVETVKKLCTVQ------------------SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA--- 66 (165)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTT------------------TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHhCCHHHHHHHHHcC------------------CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCC---
Confidence 457899999999999999999865 55677788899999999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCC
Q psy2184 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTL 173 (459)
Q Consensus 94 ~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 173 (459)
+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.
T Consensus 67 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------------- 130 (165)
T 3twr_A 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH---------------- 130 (165)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----------------
T ss_pred CCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc----------------
Confidence 7888899999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCC
Q psy2184 174 FPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226 (459)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~ 226 (459)
+.+++..+..|.||+++|.. ++.+++++|++.|+
T Consensus 131 ------------------ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 131 ------------------GADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp ------------------TCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred ------------------CCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 45568889999999999776 89999999998875
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=5.5e-27 Score=187.45 Aligned_cols=154 Identities=30% Similarity=0.458 Sum_probs=122.4
Q ss_pred CCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy2184 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY 145 (459)
Q Consensus 66 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~ 145 (459)
+.|+||.|+..|+.+++++|++.+.. +++..+..|.||||+ +..|+.+++++|++.|++++.++..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELV--HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCC--CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCc--CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence 45789999999999999999988321 577778889999999 888999999999999999888888888888888888
Q ss_pred CCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCC
Q psy2184 146 GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNE 225 (459)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 225 (459)
|+.+++++|++. +.+++..+..|.||||.|+..|+.+++++|++.
T Consensus 79 ~~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~- 123 (156)
T 1bd8_A 79 GFLDTLKVLVEH----------------------------------GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 123 (156)
T ss_dssp TCHHHHHHHHHT----------------------------------TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-
T ss_pred CcHHHHHHHHHc----------------------------------CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-
Confidence 888888888664 344566677777777777777777777777777
Q ss_pred CCCcccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy2184 226 ASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257 (459)
Q Consensus 226 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~ 257 (459)
++++..+..|.|||++|+..|+.+++++|+++
T Consensus 124 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 124 SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 77777777777777777777777777777653
No 78
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=8.5e-31 Score=237.30 Aligned_cols=270 Identities=20% Similarity=0.153 Sum_probs=174.2
Q ss_pred HHHHHHH-cCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCC
Q psy2184 17 DLLEAAR-NGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNV 95 (459)
Q Consensus 17 ~l~~A~~-~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~ 95 (459)
.++.|.. .++.++++++++.+ ..+.||||+|++.|+.+++++|++.|+.....
T Consensus 68 ~~~~a~~~~~~~~~~~~l~~~g--------------------------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~ 121 (376)
T 2aja_A 68 CLYYAHYNRNAKQLWSDAHKKG--------------------------IKSEVICFVAAITGCSSALDTLCLLLTSDEIV 121 (376)
T ss_dssp HHHHHHTTTTCTTHHHHHHHHT--------------------------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC
T ss_pred HHHHHHhcCCCHHHHHHHHHcC--------------------------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHH
Confidence 3445555 57888888888763 33459999999999999999999998743233
Q ss_pred CCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCC
Q psy2184 96 NLMTKDNETALHCAAQYGHTPVVSQLLEHSCDP---TIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST 172 (459)
Q Consensus 96 ~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~---~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 172 (459)
+..+..+.||||+|+..|+.+++++|+++|+++ +..+.. .||||+|+..|+.+++++|++.+......
T Consensus 122 ~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~-------- 192 (376)
T 2aja_A 122 KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATA-------- 192 (376)
T ss_dssp C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHH--------
T ss_pred HHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchh--------
Confidence 345667889999999999999999999999762 222223 89999999999999999999987654220
Q ss_pred CCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHH-HcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHH
Q psy2184 173 LFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAA-LNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV 251 (459)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~ 251 (459)
..+..|.||||.|+ ..|+.+++++|++.|+ .+.|||++|+..|+.+++
T Consensus 193 ------------------------~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv 241 (376)
T 2aja_A 193 ------------------------MIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVN 241 (376)
T ss_dssp ------------------------HHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHH
T ss_pred ------------------------ccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHH
Confidence 02345789999999 9999999999998764 267899999999999999
Q ss_pred HHHHhCCCCCCCcccc-------cCCCCCH-------------hhHHHH---cCCHHHHHHHHhCCC-----CCCCCCCC
Q psy2184 252 RVLLCHGPSVPNVNLM-------TKDNETA-------------LHCAAQ---YGHTPVVSQLLEHSC-----DPTIRNSR 303 (459)
Q Consensus 252 ~~Ll~~~~~~~~~~~~-------~~~g~t~-------------L~~a~~---~~~~~~~~~Ll~~g~-----~~~~~~~~ 303 (459)
++|++++++ ++.. ...|... +...+. .+..+.+++|++.++ +.......
T Consensus 242 ~lL~~~ga~---~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~ 318 (376)
T 2aja_A 242 PFIARHVNR---LKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD 318 (376)
T ss_dssp HHHHHHHHH---HHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTC
T ss_pred HHHHhcCcc---cccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCC
Confidence 999988753 2221 1122111 111111 223556777776421 11122345
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCChhHHHHhcCcHHHHHHHHH
Q psy2184 304 HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365 (459)
Q Consensus 304 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~ 365 (459)
+.+|+++|+..|+.+++++|++.+.- .+..+.|++.+|-..|..++.+.-+.
T Consensus 319 ~~~~L~~A~~~g~~e~v~lLl~~~~v----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (376)
T 2aja_A 319 ANELLRLALRLGNQGACALLLSIPSV----------LALTKANNYYINETGGRLDLRAVALE 370 (376)
T ss_dssp CCHHHHHHHHHTCTTHHHHHTTSHHH----------HHSCC---------------------
T ss_pred ccHHHHHHHHcCcHHHHHHHHcChHH----------HHHHHHhccccccccccccHHHHHHH
Confidence 67899999999999999999986421 12244689999999999998876554
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=2.1e-27 Score=203.78 Aligned_cols=182 Identities=20% Similarity=0.199 Sum_probs=122.4
Q ss_pred CCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2184 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAA 143 (459)
Q Consensus 64 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~ 143 (459)
..|.||||.|++.|+.+.++.|++.|+ +++. +..+.||||.|+..|+.+++++|++.|++++..|..|.||||+|+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~---~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGM---RVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV 78 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCC---Cccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 458899999999999999999999998 4553 467899999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHh
Q psy2184 144 QYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLT 223 (459)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~ 223 (459)
..|+.+++++|++. +.+++..+..|.||||.|+..|+.+++++|++
T Consensus 79 ~~g~~~~v~~Ll~~----------------------------------ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 124 (239)
T 1ycs_B 79 CAGHTEIVKFLVQF----------------------------------GVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124 (239)
T ss_dssp HHTCHHHHHHHHHH----------------------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc----------------------------------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99999999999765 44567788889999999999999999999999
Q ss_pred CCCCCcccCCCCC-cHHHHH--HHcCCHHHHHHHHhCCCCCCCcc------cccCCCCCHhhHHHHcCC
Q psy2184 224 NEASTNIVDTKGS-SPLHLA--AWTGNVDIVRVLLCHGPSVPNVN------LMTKDNETALHCAAQYGH 283 (459)
Q Consensus 224 ~~~~~~~~~~~~~-t~L~~a--~~~~~~~~~~~Ll~~~~~~~~~~------~~~~~g~t~L~~a~~~~~ 283 (459)
+|++++..+..+. ||||+| +..|+.+++++|++.+++....+ ..+..+.+++++++..|.
T Consensus 125 ~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 125 SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred cCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 9999988887776 899988 77888899999988876432211 124556777777766664
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=1.7e-27 Score=204.34 Aligned_cols=177 Identities=20% Similarity=0.181 Sum_probs=101.3
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHH
Q psy2184 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ 280 (459)
Q Consensus 201 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~ 280 (459)
.|.||||.|+..++.+.++.|++.|++++.. ..+.||||.|+..|+.+++++|++.++ +++..+..|.||||+|+.
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVD---DPSLPNDEGITALHNAVC 79 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS---SCCCCCTTSCCHHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCC---CCCCcCCCCCCHHHHHHH
Confidence 3556666666666666666666666655543 345566666666666666666665554 445555556666666666
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCChhHHHHhcCcHHHH
Q psy2184 281 YGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVV 360 (459)
Q Consensus 281 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~~ 360 (459)
.|+.+++++|+++|++++.++..| .||||+|+..|+.+++
T Consensus 80 ~g~~~~v~~Ll~~ga~~~~~d~~g----------------------------------------~tpL~~A~~~~~~~~v 119 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVNAADSDG----------------------------------------WTPLHCAASCNNVQVC 119 (239)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTC----------------------------------------CCHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCCCC----------------------------------------CCHHHHHHHcCCHHHH
Confidence 666666666666666655555444 4666666677777788
Q ss_pred HHHHHcCCCCCCCCCCC--CHHHHH--HHcCCHHHHHHHHHCCCCCccc---------ccCCCCHHHHHhcCCC
Q psy2184 361 ARLLQAGLDVNIRTASG--TALHEA--ALCGKLEVVKTLLEHGADLRII---------DSKHNTVLDLLKQFPP 421 (459)
Q Consensus 361 ~~Ll~~g~~~~~~~~~~--t~L~~A--~~~~~~~i~~~Ll~~ga~~~~~---------~~~g~t~l~~a~~~~~ 421 (459)
++|+++|++++..+..+ ||||+| +..++.+++++|+++|++++.. +..+.++.+++.+.+.
T Consensus 120 ~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 120 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 88888899999888665 999999 7788999999999999998877 5557788777776654
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=3.2e-26 Score=182.64 Aligned_cols=144 Identities=24% Similarity=0.275 Sum_probs=87.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q psy2184 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 311 (459)
Q Consensus 232 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a 311 (459)
+..+.||||+|+..|+.+++++|++++. +++..+..|.||||+|+ .++.+++++|+++|++++.++..|
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g------- 77 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGA---NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPAT------- 77 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTC---CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTT-------
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCC-------
Confidence 4445556666666666666666665554 34445555556665553 555566666665555555554444
Q ss_pred HHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCC-hhHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CHHHHHHHcCCH
Q psy2184 312 AQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPAS-PLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKL 389 (459)
Q Consensus 312 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~-~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-t~L~~A~~~~~~ 389 (459)
.| |||+|+..|+.+++++|+++|++++.++..| ||||+|+..++.
T Consensus 78 ---------------------------------~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~ 124 (156)
T 1bi7_B 78 ---------------------------------LTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR 124 (156)
T ss_dssp ---------------------------------CCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCH
T ss_pred ---------------------------------CcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHH
Confidence 45 7777777788888889999999999999989 999999999999
Q ss_pred HHHHHHHHCCCCCcccccCCCCHHHHHhcC
Q psy2184 390 EVVKTLLEHGADLRIIDSKHNTVLDLLKQF 419 (459)
Q Consensus 390 ~i~~~Ll~~ga~~~~~~~~g~t~l~~a~~~ 419 (459)
+++++|+++|++++.+|..|.||.+-+.+.
T Consensus 125 ~~v~~Ll~~ga~~~~~~~~g~t~~~~~~~i 154 (156)
T 1bi7_B 125 DVARYLRAAAGGTRGSNHARIDAAEGPSDI 154 (156)
T ss_dssp HHHHHHSSCC--------------------
T ss_pred HHHHHHHHcCCCCCccCcCcCcccccCCCC
Confidence 999999999999999999999998865543
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=7.7e-26 Score=175.93 Aligned_cols=134 Identities=25% Similarity=0.340 Sum_probs=105.1
Q ss_pred CCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-
Q psy2184 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR- 134 (459)
Q Consensus 56 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~- 134 (459)
+++++..+..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+. |+.+++++|+++|++++.++..
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~ 77 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA---DPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT 77 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCC---CcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC
Confidence 56778888888888888888888888888888888 677778888888888888 8888888888888888888877
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCC
Q psy2184 135 HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGH 214 (459)
Q Consensus 135 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ 214 (459)
|.||||+|+..++.+++++|++. +.+++..+..|.|||++|+..++
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~----------------------------------ga~~~~~d~~g~tpl~~A~~~~~ 123 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRA----------------------------------GARLDVCDAWGRLPVDLAEEQGH 123 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHT----------------------------------CCCCCCCSSSSSCHHHHHHHHTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHc----------------------------------CCCCCccCCCCCCHHHHHHHcCC
Confidence 78888888887777777777654 33445666677777777777777
Q ss_pred HHHHHHHHhCCCC
Q psy2184 215 KEIVELLLTNEAS 227 (459)
Q Consensus 215 ~~~~~~Ll~~~~~ 227 (459)
.+++++|+++|++
T Consensus 124 ~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 124 RDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCC
Confidence 7777777766653
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=2.1e-25 Score=177.91 Aligned_cols=144 Identities=24% Similarity=0.254 Sum_probs=109.2
Q ss_pred CcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc-H
Q psy2184 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET-A 138 (459)
Q Consensus 60 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t-~ 138 (459)
+..+..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| |
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGA---NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP 81 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTC---CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 3456778999999999999999999999998 67888889999999985 89999999999999999999999998 9
Q ss_pred HHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHH
Q psy2184 139 LDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIV 218 (459)
Q Consensus 139 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 218 (459)
||+|+..++.+++++|++. +.+++..+..|.||||+|+..++.+++
T Consensus 82 L~~A~~~~~~~~v~~Ll~~----------------------------------ga~~~~~d~~g~tpl~~A~~~~~~~~v 127 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRA----------------------------------GARLDVRDAWGRLPVDLAEELGHRDVA 127 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHH----------------------------------TCCSSCCCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHc----------------------------------CCCCcccCCCCCCHHHHHHHhCHHHHH
Confidence 9999999999999988765 445677788888888888888888888
Q ss_pred HHHHhCCCCCcccCCCCCcHHHH
Q psy2184 219 ELLLTNEASTNIVDTKGSSPLHL 241 (459)
Q Consensus 219 ~~Ll~~~~~~~~~~~~~~t~L~~ 241 (459)
++|+++|++++..+..|.|+.+.
T Consensus 128 ~~Ll~~ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 128 RYLRAAAGGTRGSNHARIDAAEG 150 (156)
T ss_dssp HHHSSCC----------------
T ss_pred HHHHHcCCCCCccCcCcCccccc
Confidence 88888888888888888877653
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=4.6e-26 Score=186.14 Aligned_cols=107 Identities=19% Similarity=0.121 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCC-CCCCchHHHHHhcCCH----HHHHHHHhcCC
Q psy2184 16 QDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVD-TKGSSPLHLAAWTGNV----DIVRVLLCHGP 90 (459)
Q Consensus 16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~L~~A~~~g~~----~~v~~Ll~~g~ 90 (459)
+.|+.|++.|+++.|+.+++.. ++.++ ..|.||||+|+..|+. +++++|++.|+
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~---------------------~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Ga 66 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKG---------------------YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHS---------------------SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHcCCHHHHHHHHhcC---------------------cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCC
Confidence 5689999999999988888753 33444 6688999999998875 48999999999
Q ss_pred CCCCCCCCCCCCccHHHHHHHcCC------HHHHHHHHHCCCCCCCCCCCCC-cHHHHHHHcC
Q psy2184 91 SVPNVNLMTKDNETALHCAAQYGH------TPVVSQLLEHSCDPTIRNSRHE-TALDLAAQYG 146 (459)
Q Consensus 91 ~~~~~~~~~~~~~t~L~~A~~~~~------~~iv~~Ll~~g~~~~~~~~~~~-t~l~~a~~~~ 146 (459)
+++.++..|.||||+|+..++ .+++++|+++|++++.+|..|. ||||+|+..+
T Consensus 67 ---dvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~ 126 (186)
T 3t8k_A 67 ---DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYF 126 (186)
T ss_dssp ---CSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCC
T ss_pred ---CCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcC
Confidence 788888899999999998886 5789999999999999998888 8888887743
No 85
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=4.3e-24 Score=166.00 Aligned_cols=124 Identities=33% Similarity=0.439 Sum_probs=117.2
Q ss_pred cCCCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCC
Q psy2184 12 MGKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 91 (459)
Q Consensus 12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~ 91 (459)
..+.+.|+.|++.|+.++|++|++. |++++..|..|.||||+|+..|+.+++++|++.|+
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~- 71 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMAN-------------------GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA- 71 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHT-------------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHc-------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-
Confidence 3466799999999999999999986 67888999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy2184 92 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 157 (459)
Q Consensus 92 ~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~ 157 (459)
+++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.
T Consensus 72 --~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 72 --DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp --CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred --CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 7888899999999999999999999999999999999999999999999999999999999875
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=1.2e-24 Score=169.22 Aligned_cols=132 Identities=23% Similarity=0.319 Sum_probs=117.8
Q ss_pred CCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCC-C
Q psy2184 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKD-N 271 (459)
Q Consensus 193 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-g 271 (459)
.+++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+. ++.+++++|+++++ +++..+.. |
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~---~~~~~~~~~g 78 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGA---EPNCADPATL 78 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC---CSSCCBTTTT
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC---CCCCcCCCCC
Confidence 4567788899999999999999999999999999999999999999999999 99999999999987 56777888 8
Q ss_pred CCHhhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy2184 272 ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328 (459)
Q Consensus 272 ~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~ 328 (459)
.||||+|+..++.+++++|+++|++++.++..|.|||++|+..++.+++++|++.+.
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999998888888888887654
No 87
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=6.5e-25 Score=179.34 Aligned_cols=152 Identities=13% Similarity=0.025 Sum_probs=104.5
Q ss_pred CCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC-CCCccHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2184 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT-KDNETALHCAAQYGHT----PVVSQLLEHSCDPTIRNSRHETALD 140 (459)
Q Consensus 66 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~~~~t~L~~A~~~~~~----~iv~~Ll~~g~~~~~~~~~~~t~l~ 140 (459)
+.++|+.|++.|+++.++.++..+.+ ..+ ..|.||||+|+..++. +++++|+++|++++.++..|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~-----~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE-----DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS-----CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc-----cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 45799999999999999999988752 234 6799999999999975 5999999999999999999999999
Q ss_pred HHHHcCCH------HHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCc-cHHHHHHHcC
Q psy2184 141 LAAQYGRL------ETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGY-SALHHAALNG 213 (459)
Q Consensus 141 ~a~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~a~~~~ 213 (459)
+|+..++. +++++|++. +.+++.++..|. ||||+|+..+
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~----------------------------------Gadin~~d~~g~ttpLh~A~~~~ 126 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEK----------------------------------GADITALYKPYKIVVFKNIFNYF 126 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHT----------------------------------TCCSSSCBGGGTBCTTGGGGGCC
T ss_pred HHHHcCCcchhhHHHHHHHHHHC----------------------------------CCCCCccCCCcCchHHHHHHHcC
Confidence 99998763 344444332 333444555555 5555555422
Q ss_pred -----CHHHHHHHHh-CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy2184 214 -----HKEIVELLLT-NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLC 256 (459)
Q Consensus 214 -----~~~~~~~Ll~-~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~ 256 (459)
..+++++|++ .|++++.+|..|.||||+|+..|+.+++++|.+
T Consensus 127 ~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 127 VDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175 (186)
T ss_dssp SCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 2234455555 455555555555555555555555555555443
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=1.8e-23 Score=160.48 Aligned_cols=126 Identities=44% Similarity=0.649 Sum_probs=100.1
Q ss_pred CCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy2184 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 144 (459)
Q Consensus 65 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~ 144 (459)
+|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTC---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCC---CCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence 47788888888888888888888888 667778888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhC
Q psy2184 145 YGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTN 224 (459)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~ 224 (459)
.++.+++++|++. +.+++..+..|.||++.|+..++.+++++|+++
T Consensus 78 ~~~~~~~~~Ll~~----------------------------------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 123 (126)
T 1n0r_A 78 NGHLEVVKLLLEA----------------------------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123 (126)
T ss_dssp TTCHHHHHHHHHT----------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cChHHHHHHHHHc----------------------------------CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 8888888877654 334455666777777777777777777777777
Q ss_pred CCC
Q psy2184 225 EAS 227 (459)
Q Consensus 225 ~~~ 227 (459)
|++
T Consensus 124 Gad 126 (126)
T 1n0r_A 124 GAY 126 (126)
T ss_dssp TCC
T ss_pred CCC
Confidence 653
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=2.7e-23 Score=159.53 Aligned_cols=124 Identities=40% Similarity=0.579 Sum_probs=117.2
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCC
Q psy2184 14 KDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP 93 (459)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 93 (459)
+.+.|+.|++.|+.++|++|++. |++++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~-------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--- 59 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEA-------------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--- 59 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHH-------------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC---
T ss_pred CccHHHHHHHcCcHHHHHHHHHc-------------------CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC---
Confidence 57889999999999999999986 67788889999999999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy2184 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 159 (459)
Q Consensus 94 ~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~ 159 (459)
+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..++.+++++|++.+.
T Consensus 60 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 778889999999999999999999999999999999999999999999999999999999998753
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=4.4e-23 Score=160.25 Aligned_cols=127 Identities=32% Similarity=0.419 Sum_probs=117.6
Q ss_pred CCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhH
Q psy2184 198 QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 277 (459)
Q Consensus 198 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~ 277 (459)
....+.|+||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++++ +++..+..|.||||+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~d~~g~t~L~~ 86 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA---DVNAVDAIGFTPLHL 86 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTCCCHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCcCCCCCCCHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999987 677788999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy2184 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 327 (459)
Q Consensus 278 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 327 (459)
|+..++.+++++|+++|++++..+..|.|||++|+..++.+++++|++.+
T Consensus 87 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999998764
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=9.1e-24 Score=164.50 Aligned_cols=132 Identities=26% Similarity=0.353 Sum_probs=100.2
Q ss_pred CCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy2184 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 135 (459)
Q Consensus 56 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~ 135 (459)
|+++ .+|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 76 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGS---DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC---CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGG
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCC
Confidence 4556 567888899999999899999999998888 677788888899999998888889998888888888888888
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCH
Q psy2184 136 ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHK 215 (459)
Q Consensus 136 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~ 215 (459)
.||||+|+..++.+++++|++. +.+++..+..|.||+++|+..+..
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~----------------------------------ga~~~~~~~~g~tpl~~A~~~~~~ 122 (137)
T 3c5r_A 77 DSPLHDAAKNGHVDIVKLLLSY----------------------------------GASRNAVNIFGLRPVDYTDDESMK 122 (137)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHT----------------------------------TCCTTCCCTTSCCGGGGCCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHc----------------------------------CCCCCCCCCCCCCHHHHHhhccHH
Confidence 8888888888888888777654 344566677777777777766666
Q ss_pred HHHHHHHhCC
Q psy2184 216 EIVELLLTNE 225 (459)
Q Consensus 216 ~~~~~Ll~~~ 225 (459)
++++++.+.+
T Consensus 123 ~~l~~l~~~~ 132 (137)
T 3c5r_A 123 SLLLLPEKNE 132 (137)
T ss_dssp HHHSCC----
T ss_pred HHHhhccccc
Confidence 6666655443
No 92
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=4.6e-23 Score=157.14 Aligned_cols=110 Identities=28% Similarity=0.410 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCC
Q psy2184 13 GKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 92 (459)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~ 92 (459)
.+.+.|+.|+..|+.++|++|++. |++++.++..|.||||+|+..|+.+++++|++.|+
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~-------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-- 64 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAK-------------------GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA-- 64 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHT-------------------TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC--
T ss_pred ccchHHHHHHHcCCHHHHHHHHHc-------------------CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--
Confidence 467899999999999999999986 67888999999999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy2184 93 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 144 (459)
Q Consensus 93 ~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~ 144 (459)
+++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||+|+|..
T Consensus 65 -~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 65 -DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp -CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred -CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 788899999999999999999999999999999999999999999999943
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=4.7e-23 Score=160.46 Aligned_cols=128 Identities=28% Similarity=0.347 Sum_probs=114.7
Q ss_pred cCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhh
Q psy2184 197 VQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 276 (459)
Q Consensus 197 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~ 276 (459)
..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++++ +++..+..|.||||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---~~~~~~~~g~t~L~ 81 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA---LVNTTGYQNDSPLH 81 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCGGGCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---cccCcCCCCCCHHH
Confidence 567889999999999999999999999999999999999999999999999999999999987 57778889999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy2184 277 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 327 (459)
Q Consensus 277 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 327 (459)
+|+..++.+++++|+++|++++.++..|.||+++|+..+..++++++.+..
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 999999999999999999999999999999999999888888877776543
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=2.5e-22 Score=177.42 Aligned_cols=122 Identities=25% Similarity=0.275 Sum_probs=113.1
Q ss_pred CHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCc------CCCCCCchHHHHHhc---CCHHHHHHH
Q psy2184 15 DQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNI------VDTKGSSPLHLAAWT---GNVDIVRVL 85 (459)
Q Consensus 15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~t~L~~A~~~---g~~~~v~~L 85 (459)
.+.|+.|+..|+++.|++|++. |++++. .+..|.||||+|+.. |+.+++++|
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~-------------------g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~L 212 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFAN-------------------GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 212 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-------------------TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHH
T ss_pred HHHHhhhhhccCHHHHHHHHhc-------------------CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHH
Confidence 3569999999999999999876 566666 688999999999997 899999999
Q ss_pred HhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy2184 86 LCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 158 (459)
Q Consensus 86 l~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~ 158 (459)
+++|+ +++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+
T Consensus 213 l~~ga---dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g 282 (301)
T 2b0o_E 213 IQNGG---HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 282 (301)
T ss_dssp HHHSS---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhcCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence 99999 78889999999999999999999999999999999999999999999999999999999998753
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=4.3e-22 Score=163.21 Aligned_cols=140 Identities=28% Similarity=0.322 Sum_probs=116.0
Q ss_pred CCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHH
Q psy2184 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN-SRHETALDL 141 (459)
Q Consensus 63 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~ 141 (459)
+..|.||||+|+..|+.+++++|++ |+ +++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~---~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DR---DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TS---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 3568899999999999999999999 87 788889999999999999999999999999999998888 788899999
Q ss_pred HHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHH
Q psy2184 142 AAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221 (459)
Q Consensus 142 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L 221 (459)
|+..++.+++++|++. +.+++.++..|.||||+|+..++.
T Consensus 117 A~~~~~~~~v~~Ll~~----------------------------------ga~~~~~d~~g~tpl~~A~~~~~~------ 156 (183)
T 3deo_A 117 AAGYVRPEVVEALVEL----------------------------------GADIEVEDERGLTALELAREILKT------ 156 (183)
T ss_dssp HHHTTCHHHHHHHHHH----------------------------------TCCTTCCCTTSCCHHHHHHHHHHT------
T ss_pred HHhcCcHHHHHHHHHc----------------------------------CCCCcCCCCCCCCHHHHHHHhccC------
Confidence 9998888888888765 445577788888888888763322
Q ss_pred HhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy2184 222 LTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257 (459)
Q Consensus 222 l~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~ 257 (459)
..+.++|++++..|..+++++|.++
T Consensus 157 -----------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 -----------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp -----------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred -----------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 2346788888888888888877654
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=5.9e-22 Score=162.37 Aligned_cols=140 Identities=27% Similarity=0.323 Sum_probs=126.6
Q ss_pred CCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccccc-CCCCCHhhH
Q psy2184 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT-KDNETALHC 277 (459)
Q Consensus 199 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~g~t~L~~ 277 (459)
+..|.||||.|+..|+.+++++|++ |.+++..+..|.||||+|+..|+.+++++|+++++ +++..+ ..|.||||+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA---DLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCSSSSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCcCCCCCCCCHHHH
Confidence 4578899999999999999999999 99999999999999999999999999999999998 566677 889999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCChhHHHHhcCcH
Q psy2184 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHR 357 (459)
Q Consensus 278 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~ 357 (459)
|+..|+.+++++|+++|++++.++..|.|||++|+..++. ..+.+++++|+..|..
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------------~~~~~~l~~a~~~~~~ 172 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------------TPKGNPMQFGRRIGLE 172 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------------CCCCSHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------------cccccHHHHHHHcCHH
Confidence 9999999999999999999999999999999999874322 1235889999999999
Q ss_pred HHHHHHHHc
Q psy2184 358 SVVARLLQA 366 (459)
Q Consensus 358 ~~~~~Ll~~ 366 (459)
+++++|.++
T Consensus 173 ~i~~~L~~~ 181 (183)
T 3deo_A 173 KVINVLEGQ 181 (183)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999998765
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=6.9e-22 Score=169.70 Aligned_cols=139 Identities=28% Similarity=0.331 Sum_probs=100.1
Q ss_pred CCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH
Q psy2184 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN-SRHETALDLA 142 (459)
Q Consensus 64 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~-~~~~t~l~~a 142 (459)
..|.||||+|+..|+.+++++|++ |+ +++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DR---DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TC---CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CC---CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 356788888888888888888888 76 667777788888888888888888888888888887777 6677777777
Q ss_pred HHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHH
Q psy2184 143 AQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222 (459)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll 222 (459)
+..|+.+++++|++. +.+++..+..|.||||+|+..+.
T Consensus 119 ~~~g~~~~v~~Ll~~----------------------------------ga~~~~~d~~g~t~l~~A~~~~~-------- 156 (244)
T 3ui2_A 119 AGYVRPEVVEALVEL----------------------------------GADIEVEDERGLTALELAREILK-------- 156 (244)
T ss_dssp HHTTCHHHHHHHHHT----------------------------------TCCTTCCCTTCCCHHHHHHHHHT--------
T ss_pred HHcCCHHHHHHHHHC----------------------------------CCCCCCCCCCCCcHHHHHHHHHh--------
Confidence 777777777777654 34456666777777777764211
Q ss_pred hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy2184 223 TNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257 (459)
Q Consensus 223 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~ 257 (459)
...+.+||++|+..|+.+++++|++.
T Consensus 157 ---------~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 157 ---------TTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp ---------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 13355677777777777777766654
No 98
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=5.5e-22 Score=170.30 Aligned_cols=139 Identities=27% Similarity=0.332 Sum_probs=120.0
Q ss_pred CCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCccccc-CCCCCHhhHH
Q psy2184 200 SSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT-KDNETALHCA 278 (459)
Q Consensus 200 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~g~t~L~~a 278 (459)
..|.||||.|+..|+.+++++|++ |++++..+..|.||||+|+..|+.+++++|+++++ +++..+ ..|.||||+|
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga---~~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA---DLDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC---CTTCCCSSSCCCHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC---CCCcCCCCCCCCHHHHH
Confidence 468899999999999999999999 99999999999999999999999999999999998 566666 7899999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCChhHHHHhcCcHH
Q psy2184 279 AQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRS 358 (459)
Q Consensus 279 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~ 358 (459)
+..|+.+++++|+++|++++.++..|.||||+|+..+.. ..+.+|+++|+..|+.+
T Consensus 119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~------------------------~~~~~~l~~a~~~g~~~ 174 (244)
T 3ui2_A 119 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------------TPKGNPMQFGRRIGLEK 174 (244)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT------------------------CCCSSHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc------------------------cCCCCHHHHHHHcChHH
Confidence 999999999999999999999999999999999852211 12356677777776666
Q ss_pred HHHHHHHc
Q psy2184 359 VVARLLQA 366 (459)
Q Consensus 359 ~~~~Ll~~ 366 (459)
++++|+++
T Consensus 175 iv~~L~~~ 182 (244)
T 3ui2_A 175 VINVLEGQ 182 (244)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666664
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=1.1e-21 Score=149.37 Aligned_cols=116 Identities=27% Similarity=0.308 Sum_probs=105.9
Q ss_pred CCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcccccCCCCCHhhHH
Q psy2184 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCA 278 (459)
Q Consensus 199 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~a 278 (459)
+..|.++||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.++ +++..+..|.||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA---DINAPDKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC---CTTCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC---CCCcCCCCCCCHHHHH
Confidence 4568899999999999999999999999999999999999999999999999999999997 6788889999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2184 279 AQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRL 317 (459)
Q Consensus 279 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~ 317 (459)
+..++.+++++|+++|++++.++..|.||+++|...+..
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 119 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK 119 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHH
Confidence 999999999999999999999999999999999544333
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=5.6e-22 Score=168.13 Aligned_cols=133 Identities=25% Similarity=0.274 Sum_probs=91.4
Q ss_pred CCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHH
Q psy2184 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDL 141 (459)
Q Consensus 63 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~~t~l~~ 141 (459)
+..|.||||+||..|+.+++++|++.|+ +++..+..|.||||+|+..|+.+++++|++. |++++..|..|.||||+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRV---GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCC---CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence 4456778888888888888888888877 5677777788888888888888888888887 88888777777778777
Q ss_pred HHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHH
Q psy2184 142 AAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221 (459)
Q Consensus 142 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L 221 (459)
|+..|+.+++++|++. +.+++..+..|.|||++|+..+..++++.|
T Consensus 147 A~~~~~~~~v~~Ll~~----------------------------------ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l 192 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAK----------------------------------GARTDLRNIEKKLAFDMATNAACASLLKKK 192 (222)
T ss_dssp HHHHTCHHHHHHHHHH----------------------------------TCCSCCCCTTSCCHHHHCCSHHHHHHHC--
T ss_pred HHHcCCHHHHHHHHHc----------------------------------CCCCccccCCCCCHHHHhcchhHHHHHHHH
Confidence 7777777777777654 344566677777777777777777777777
Q ss_pred HhCCCCCcccC
Q psy2184 222 LTNEASTNIVD 232 (459)
Q Consensus 222 l~~~~~~~~~~ 232 (459)
++.++.....+
T Consensus 193 ~~~~~~~~~~~ 203 (222)
T 3ehr_A 193 QGTDAVRTLSN 203 (222)
T ss_dssp -----------
T ss_pred hccchhhhccc
Confidence 77666655443
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=172.81 Aligned_cols=139 Identities=22% Similarity=0.231 Sum_probs=87.3
Q ss_pred CccHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCchHHHHHhhccCC
Q psy2184 102 NETALHCAAQYGHTPVVSQLLEHSCDPTI------RNSRHETALDLAAQY---GRLETVDTLVRTHPGLIQAYNARAQST 172 (459)
Q Consensus 102 ~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~------~~~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~ 172 (459)
..++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. ++.+++++|++.
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--------------- 215 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--------------- 215 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH---------------
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc---------------
Confidence 34556666666666666666666666655 455666666666665 566666666553
Q ss_pred CCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q psy2184 173 LFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252 (459)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~ 252 (459)
+.+++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.|||++|+..++.++++
T Consensus 216 -------------------gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~ 276 (301)
T 2b0o_E 216 -------------------GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 276 (301)
T ss_dssp -------------------SSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred -------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 3334555666666777777777777777777777777777777777777777777777777
Q ss_pred HHHhCCCCCCCcccccCCCCCHhhHHHHcCC
Q psy2184 253 VLLCHGPSVPNVNLMTKDNETALHCAAQYGH 283 (459)
Q Consensus 253 ~Ll~~~~~~~~~~~~~~~g~t~L~~a~~~~~ 283 (459)
+|++.+++ .|.||||+|+..|+
T Consensus 277 ~Ll~~ga~---------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 277 LLEQAQAG---------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHHHHHH---------TTSSCCC-------
T ss_pred HHHHhcCC---------CCCChhHHHHhcCC
Confidence 77777652 35677887777765
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=7.9e-22 Score=167.22 Aligned_cols=134 Identities=21% Similarity=0.230 Sum_probs=76.0
Q ss_pred CCCCCHhhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhc-CCchHHHhhhhcccCCCCCCh
Q psy2184 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT-HPGLIQAYNARAQSTLFPASP 347 (459)
Q Consensus 269 ~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~~~ 347 (459)
..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++. +... ...+..|.||
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-------~~~d~~g~tp 143 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-------NQQNKLGDTA 143 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-------CCCCTTSCCH
T ss_pred cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-------cccCCCCCCH
Confidence 3445555555555555555555555555555555555555555555555555555544 3221 1223344577
Q ss_pred hHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCcccccCC
Q psy2184 348 LHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKH 409 (459)
Q Consensus 348 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll~~ga~~~~~~~~g 409 (459)
||+|+..|+.+++++|+++|++++.++..| |||++|+..++.++++.|++.|++.+.+|.+|
T Consensus 144 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 777777777888888888889999888888 99999999999999999999999888777664
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=1.2e-20 Score=135.70 Aligned_cols=92 Identities=41% Similarity=0.622 Sum_probs=86.8
Q ss_pred CCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q psy2184 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 144 (459)
Q Consensus 65 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~ 144 (459)
+|.||||+|+..|+.+++++|++.|+ +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCC---CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 47899999999999999999999999 788899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCC
Q psy2184 145 YGRLETVDTLVRTHP 159 (459)
Q Consensus 145 ~~~~~~~~~l~~~~~ 159 (459)
.++.+++++|++.+.
T Consensus 78 ~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGA 92 (93)
T ss_dssp TTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCC
Confidence 999999999998753
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=2.3e-20 Score=162.91 Aligned_cols=128 Identities=21% Similarity=0.233 Sum_probs=113.9
Q ss_pred HHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhc---CCHHHHHHHHhcCCCC
Q psy2184 16 QDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWT---GNVDIVRVLLCHGPSV 92 (459)
Q Consensus 16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~ 92 (459)
..|+.|+..|+++.++++++.+.+.... ..++..+..|.||||+|+.. |+.+++++|+++|+
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~-------------~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga-- 196 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEK-------------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-- 196 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSB-------------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS--
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhh-------------ccccccccCCCCcchHHHHhcccchHHHHHHHHHCCC--
Confidence 4789999999999999988875432210 11455678899999999999 89999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy2184 93 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 159 (459)
Q Consensus 93 ~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~ 159 (459)
+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.+.
T Consensus 197 -~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 197 -NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp -CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 788899999999999999999999999999999999999999999999999999999999998754
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=3.1e-20 Score=167.50 Aligned_cols=122 Identities=24% Similarity=0.308 Sum_probs=114.7
Q ss_pred CHHHHHHHHc-CCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCC--CCCCchHHHHHhcCCHHHHHHHHhcCCC
Q psy2184 15 DQDLLEAARN-GNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVD--TKGSSPLHLAAWTGNVDIVRVLLCHGPS 91 (459)
Q Consensus 15 ~~~l~~A~~~-g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~t~L~~A~~~g~~~~v~~Ll~~g~~ 91 (459)
.+.|+.|+.. |++++|++|++. |++++..+ ..|.||||+|+..|+.+++++|+++|+
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~-------------------Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga- 259 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAH-------------------GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA- 259 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHT-------------------TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred CcHHHHHHHccCCHHHHHHHHHc-------------------CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCC-
Confidence 4589999999 999999999876 77888888 889999999999999999999999999
Q ss_pred CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy2184 92 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 158 (459)
Q Consensus 92 ~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~ 158 (459)
+++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+...
T Consensus 260 --dvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 260 --NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp --CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999999999999999999998753
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=2.9e-20 Score=176.57 Aligned_cols=126 Identities=25% Similarity=0.279 Sum_probs=115.8
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcC------CCCCCchHHHHHh---cCCHHHHHH
Q psy2184 14 KDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIV------DTKGSSPLHLAAW---TGNVDIVRV 84 (459)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~t~L~~A~~---~g~~~~v~~ 84 (459)
..+.|+.|+..|+++.|+.|++. |+++|.. +..|.||||+||. .|+.+++++
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~-------------------g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~ 192 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFAN-------------------GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDF 192 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHT-------------------TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHH
T ss_pred cHHHHHHHHhccCHHHHHHHHhh-------------------cccccCCCCCcccccccchHHHHHHHhcccccHHHHHH
Confidence 34689999999999999999987 5666655 8899999999966 899999999
Q ss_pred HHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch
Q psy2184 85 LLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 161 (459)
Q Consensus 85 Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~ 161 (459)
|+++|+ +++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.+...
T Consensus 193 Ll~~ga---~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 266 (497)
T 3lvq_E 193 IIQNGG---HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT 266 (497)
T ss_dssp HHHHSC---CTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--
T ss_pred HHHcCC---CCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 999999 78999999999999999999999999999999999999999999999999999999999999987665
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=8e-20 Score=159.50 Aligned_cols=124 Identities=21% Similarity=0.209 Sum_probs=113.7
Q ss_pred ccHHHHHHHcCCHHHHHHHHhCCCCCc------ccCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCcccccCCCCC
Q psy2184 203 YSALHHAALNGHKEIVELLLTNEASTN------IVDTKGSSPLHLAAWT---GNVDIVRVLLCHGPSVPNVNLMTKDNET 273 (459)
Q Consensus 203 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~------~~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~g~t 273 (459)
.++|+.|+..++.+.++.+++.|.+++ ..+..|.||||+|+.. ++.+++++|+++|+ +++..+..|.|
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga---~in~~d~~g~T 207 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG---NLDKQTGKGST 207 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS---CTTCCCTTCCC
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCC---CccccCCCCCC
Confidence 468999999999999999999998844 4478899999999999 89999999999998 67888999999
Q ss_pred HhhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCc
Q psy2184 274 ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 329 (459)
Q Consensus 274 ~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~ 329 (459)
|||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.+..
T Consensus 208 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 208 ALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999988664
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=6.5e-20 Score=131.82 Aligned_cols=92 Identities=42% Similarity=0.603 Sum_probs=86.3
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCC
Q psy2184 14 KDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP 93 (459)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 93 (459)
+.+.|+.|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~-------------------g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga--- 59 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEA-------------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--- 59 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---
T ss_pred CCcHHHHHHHcCCHHHHHHHHHc-------------------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC---
Confidence 56889999999999999999976 78899999999999999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCC
Q psy2184 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 127 (459)
Q Consensus 94 ~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~ 127 (459)
+++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 60 ~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7888899999999999999999999999999985
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=6.1e-20 Score=165.54 Aligned_cols=150 Identities=27% Similarity=0.324 Sum_probs=107.1
Q ss_pred CCCCccHHHHHHHc-CCHHHHHHHHHCCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCC
Q psy2184 99 TKDNETALHCAAQY-GHTPVVSQLLEHSCDPTIRN--SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFP 175 (459)
Q Consensus 99 ~~~~~t~L~~A~~~-~~~~iv~~Ll~~g~~~~~~~--~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 175 (459)
...+.|+||.|+.. ++.+++++|++.|++++..+ ..|.||||+|+..++.+++++|++.
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~------------------ 257 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN------------------ 257 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT------------------
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHc------------------
Confidence 34456789999988 89999999999999988887 7888888888888888888888765
Q ss_pred CChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy2184 176 ASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255 (459)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll 255 (459)
+.+++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+
T Consensus 258 ----------------Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl 321 (368)
T 3jue_A 258 ----------------GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321 (368)
T ss_dssp ----------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ----------------CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 4456777888888888888888888888888888888888888889999999989999888888
Q ss_pred hCCCCCCCcccccCCCCCHhhHHHHcC
Q psy2184 256 CHGPSVPNVNLMTKDNETALHCAAQYG 282 (459)
Q Consensus 256 ~~~~~~~~~~~~~~~g~t~L~~a~~~~ 282 (459)
..+.........+..+.|++..+-...
T Consensus 322 ~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 322 LAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHC-----------------------
T ss_pred HcCCCcccccccCCCCCCHHHHHHHHH
Confidence 776543333444556677777665543
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1.9e-19 Score=171.00 Aligned_cols=136 Identities=24% Similarity=0.265 Sum_probs=114.7
Q ss_pred CCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCC------CCCCccHHHHHHH---cCCHHHHHHHHHCCCCCCCCCCCC
Q psy2184 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLM------TKDNETALHCAAQ---YGHTPVVSQLLEHSCDPTIRNSRH 135 (459)
Q Consensus 65 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~------~~~~~t~L~~A~~---~~~~~iv~~Ll~~g~~~~~~~~~~ 135 (459)
...+.||.|+..|+.+.++.|++.|+ +++.. +..|.||||+||. .|+.+++++|+++|++++.+|..|
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~---~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g 207 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQ---DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG 207 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTC---CSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSS
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcc---cccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCC
Confidence 34478999999999999999999999 55555 7889999999977 899999999999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCCccCCCCCccHHHHHHHcCCH
Q psy2184 136 ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHK 215 (459)
Q Consensus 136 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~ 215 (459)
.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.
T Consensus 208 ~TpLh~A~~~g~~~~v~~Ll~~----------------------------------ga~~~~~d~~g~tpl~~A~~~~~~ 253 (497)
T 3lvq_E 208 NTALHYAALYNQPDCLKLLLKG----------------------------------RALVGTVNEAGETALDIARKKHHK 253 (497)
T ss_dssp CCHHHHHTTTTCHHHHHHHHHT----------------------------------CCCCSCCCTTCCCHHHHHHHTTCH
T ss_pred CcHHHHHHHcCCHHHHHHHHHc----------------------------------CCCCCCcCCCCCCHHHHHHHcCCH
Confidence 9999999999999999999775 566788999999999999999999
Q ss_pred HHHHHHHhCCCCCcccCCCCCcHHHHHH
Q psy2184 216 EIVELLLTNEASTNIVDTKGSSPLHLAA 243 (459)
Q Consensus 216 ~~~~~Ll~~~~~~~~~~~~~~t~L~~a~ 243 (459)
+++++|+++|++++. +|+|.+.
T Consensus 254 ~~~~~Ll~~ga~~~~------~~~h~~~ 275 (497)
T 3lvq_E 254 ECEELLEQAQAGTFA------FPLHVDY 275 (497)
T ss_dssp HHHHHHHHTCC-----------------
T ss_pred HHHHHHHHhCCCCCC------Ccceeec
Confidence 999999999999875 4666544
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=6.5e-20 Score=137.79 Aligned_cols=107 Identities=39% Similarity=0.516 Sum_probs=85.8
Q ss_pred ccCCCCCHhhHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHhhhhcccCCCCCC
Q psy2184 267 MTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPAS 346 (459)
Q Consensus 267 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~ 346 (459)
.+..|.||||+|+..++.+++++|+++|++++..+..| .|
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g----------------------------------------~t 44 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG----------------------------------------NT 44 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSS----------------------------------------CC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC----------------------------------------CC
Confidence 45667777777777777777777777777766665554 46
Q ss_pred hhHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCcccccCCCCHH
Q psy2184 347 PLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413 (459)
Q Consensus 347 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-t~L~~A~~~~~~~i~~~Ll~~ga~~~~~~~~g~t~l 413 (459)
|||+|+..++.+++++|+++|++++..+..+ ||||+|+..++.+++++|+++|++++.++..|.+|-
T Consensus 45 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 45 PLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 6667777777788888888899999999888 999999999999999999999999999999999874
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=1.1e-19 Score=136.48 Aligned_cols=104 Identities=36% Similarity=0.513 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCC
Q psy2184 13 GKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 92 (459)
Q Consensus 13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~ 92 (459)
.+.+.|+.|+..|+.+++++|++. |++++..|..|.||||+|+..|+.+++++|++.|+
T Consensus 8 ~g~t~L~~A~~~~~~~~~~~Ll~~-------------------g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~-- 66 (115)
T 2l6b_A 8 DGNTPLHNAAKNGHAEEVKKLLSK-------------------GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA-- 66 (115)
T ss_dssp SSCCHHHHHHHHTCHHHHHHHTTT-------------------TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC--
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHc-------------------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC--
Confidence 344555555555555555555543 34455555555555555555555555555555555
Q ss_pred CCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy2184 93 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETA 138 (459)
Q Consensus 93 ~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~ 138 (459)
+++..+..|.||||+|+..++.+++++|+++|++++..+..+.+|
T Consensus 67 -~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 67 -DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp -CTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred -CCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 444555555555555555555555555555555555555555444
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.77 E-value=2.4e-18 Score=127.75 Aligned_cols=93 Identities=31% Similarity=0.397 Sum_probs=85.4
Q ss_pred CCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy2184 59 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETA 138 (459)
Q Consensus 59 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~ 138 (459)
+...+.+|.|+||+|+..|+.+++++|++.|+ +++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGA---DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence 34567889999999999999999999999999 788889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHH
Q psy2184 139 LDLAAQYGRLETVDTL 154 (459)
Q Consensus 139 l~~a~~~~~~~~~~~l 154 (459)
||+|+..++.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 9999999999999887
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=1.7e-16 Score=117.59 Aligned_cols=88 Identities=33% Similarity=0.481 Sum_probs=81.9
Q ss_pred cCCCHHHHHHHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHhcCCC
Q psy2184 12 MGKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 91 (459)
Q Consensus 12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~ 91 (459)
..+.+.|+.|+..|+.++|++|++. |++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 22 ~~g~t~L~~A~~~g~~~~v~~Ll~~-------------------g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga- 81 (110)
T 2zgd_A 22 SDLGKKLLEAARAGQDDEVRILMAN-------------------GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA- 81 (110)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHT-------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred CccchHHHHHHHcCCHHHHHHHHHc-------------------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-
Confidence 4566789999999999999999976 67889999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccHHHHHHHcCCHHHHHHH
Q psy2184 92 VPNVNLMTKDNETALHCAAQYGHTPVVSQL 121 (459)
Q Consensus 92 ~~~~~~~~~~~~t~L~~A~~~~~~~iv~~L 121 (459)
+++.++..|.||||+|+..|+.+++++|
T Consensus 82 --~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 82 --DVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp --CTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred --CccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 7888899999999999999999999987
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=80.50 E-value=1.4 Score=23.71 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.4
Q ss_pred HHHHHHHHcCCHHHHHHHHhh
Q psy2184 16 QDLLEAARNGNIQVVEKILSQ 36 (459)
Q Consensus 16 ~~l~~A~~~g~~~~v~~ll~~ 36 (459)
+.++.||..||.+.++.|-.+
T Consensus 15 QqiyvA~seGd~etv~~Le~Q 35 (40)
T 1gp8_A 15 KQMDAAASKGDVETYRKLKAK 35 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHH
Confidence 578999999999999988665
No 116
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=44.90 E-value=43 Score=25.94 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=68.3
Q ss_pred CCHHHHHHHHcCCHHHHHHHHhhhh---hhc-------CccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHH
Q psy2184 14 KDQDLLEAARNGNIQVVEKILSQRA---KRS-------GPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 83 (459)
Q Consensus 14 ~~~~l~~A~~~g~~~~v~~ll~~~~---~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~ 83 (459)
.+..+-.|+..|++++.-.+.+... .+. ...+.++++....+--++. ..+......|+.+-++
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-------~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFD-------KLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-------HHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-------HHHHHHHHhCCHHHHH
Confidence 4567788888999888876655421 110 0113344444444332221 2444444556666555
Q ss_pred HHHhcCCCCCCCCCCCCCCccHHHHHHHcCCH-HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy2184 84 VLLCHGPSVPNVNLMTKDNETALHCAAQYGHT-PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 158 (459)
Q Consensus 84 ~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~-~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~ 158 (459)
.+.+.- ......+.+.+.+...|+. +.+++|.+.|--+ -+...|...|..++.+.+++..
T Consensus 81 kla~iA-------~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~--------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIA-------QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLP--------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-------HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH--------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-------HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChH--------HHHHHHHHcCcHHHHHHHHHHh
Confidence 553211 1123345667777777775 5777777665211 2556677778888888887653
No 117
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=34.99 E-value=98 Score=27.06 Aligned_cols=62 Identities=11% Similarity=-0.049 Sum_probs=33.9
Q ss_pred CCCCCCchHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHH
Q psy2184 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 123 (459)
Q Consensus 62 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~ 123 (459)
.|..|+..+......++.+....+++.-...-.-=..+..|.-.+..+......+-...+++
T Consensus 69 ~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~ 130 (351)
T 3gvo_A 69 TDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVK 130 (351)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHG
T ss_pred hChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHH
Confidence 46667777777777777766665554321100000235566666666666666554444544
No 118
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=34.29 E-value=44 Score=31.11 Aligned_cols=104 Identities=17% Similarity=0.122 Sum_probs=54.2
Q ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchHHHHHhhccCCCCCCChHHHHHHcCCccccCCCC
Q psy2184 116 PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGA 195 (459)
Q Consensus 116 ~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (459)
++++.+.+.|..++... ..+.+...++.|+.+.+..+++.- ...+..+
T Consensus 91 ~lf~~M~~~G~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M------------------------------~~~g~~P 138 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEAT--FTNGARLAVAKDDPEMAFDMVKQM------------------------------KAFGIQP 138 (501)
T ss_dssp HHHHHHHHTTCCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHH------------------------------HHTTCCC
T ss_pred HHHHHHHHhCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHH------------------------------HHcCCCC
Confidence 56677777777665421 224556677778877766665421 0011111
Q ss_pred ccCCCCCccHHHHHHHcCCHH----HHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy2184 196 NVQDSSGYSALHHAALNGHKE----IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255 (459)
Q Consensus 196 ~~~~~~~~~~l~~a~~~~~~~----~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll 255 (459)
+.. .-.+.+...+..|..+ +++.+.+.|..++.. ...+.+...++.|+.+-+..++
T Consensus 139 d~~--tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~--ty~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 139 RLR--SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP--ELAALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp CHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccc--eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHhhCCCHHHHHHHH
Confidence 111 1123445556777765 344445567666532 1234556667777766555444
No 119
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=31.85 E-value=1.6e+02 Score=22.82 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=25.6
Q ss_pred chHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCC-CCccHHHHHHHcCCHHHHHHHHHC
Q psy2184 68 SPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTK-DNETALHCAAQYGHTPVVSQLLEH 124 (459)
Q Consensus 68 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~t~L~~A~~~~~~~iv~~Ll~~ 124 (459)
+=+..|...|+++....+.+... +. .....=..|...|++++++....+
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l~--------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKLN--------DSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhC--------CHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34556667777666655543211 11 122333345556677777666655
No 120
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=27.49 E-value=2.3e+02 Score=25.34 Aligned_cols=62 Identities=26% Similarity=0.330 Sum_probs=34.8
Q ss_pred HHHcCCHHHHHHHHhhhhhhcCccHHHHHHHHHhCCCCCCcCCCCCCchHHHHHhcCCHHHHHHHHh
Q psy2184 21 AARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLC 87 (459)
Q Consensus 21 A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 87 (459)
.+..|+...|+..+..+-+.+..+-.+-+.+| ++.+ .-..|.|.+|.|++..+-+++..|+.
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~ll--n~~~---af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQLTADEVRLL--NRPS---AFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHH--CCTT---TCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcccCHHHHHHh--CCCc---ccccCchhhhhhhhhhhhhHHHHhhh
Confidence 34679999998888776443333222222222 2222 12346667777777766666666664
No 121
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=26.92 E-value=2.1e+02 Score=25.59 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=29.4
Q ss_pred HHHhcCCHHHHHHHHhcCCCCC------------CCCCCCCCCccHHHHHHHcCCHHHHHHHHH
Q psy2184 72 LAAWTGNVDIVRVLLCHGPSVP------------NVNLMTKDNETALHCAAQYGHTPVVSQLLE 123 (459)
Q Consensus 72 ~A~~~g~~~~v~~Ll~~g~~~~------------~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~ 123 (459)
..+..|+...|+..+.+|-+.. ..+. -..|.|.+|.|++..+.+++..|+.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~a-f~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSA-FDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTT-CCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcc-cccCchhhhhhhhhhhhhHHHHhhh
Confidence 3446788888888888776431 1111 2235556666666666555555554
No 122
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=21.48 E-value=92 Score=28.96 Aligned_cols=132 Identities=12% Similarity=0.169 Sum_probs=80.5
Q ss_pred HHHHHHHcCCHHHHHHHHhhhhhhcC-c----------------------------cHHHHHHHHHhCCCCCCcCCCCCC
Q psy2184 17 DLLEAARNGNIQVVEKILSQRAKRSG-P----------------------------LAREIVELLLTNEASTNIVDTKGS 67 (459)
Q Consensus 17 ~l~~A~~~g~~~~v~~ll~~~~~~~~-~----------------------------~~~~~~~~l~~~~~~~~~~~~~~~ 67 (459)
.|...++.|+++....+++.-...-- + ...++++.+...|..+|.... .
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty--n 109 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF--T 109 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH--H
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH--H
Confidence 35566788998877777665433100 0 023567777788877765432 4
Q ss_pred chHHHHHhcCCHHHHHHHH----hcCCCCCCCCCCCCCCccHHHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCcHH
Q psy2184 68 SPLHLAAWTGNVDIVRVLL----CHGPSVPNVNLMTKDNETALHCAAQYGHTP----VVSQLLEHSCDPTIRNSRHETAL 139 (459)
Q Consensus 68 t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~~~~~t~L~~A~~~~~~~----iv~~Ll~~g~~~~~~~~~~~t~l 139 (459)
+.+...++.|+++....++ +.|.. ++. ....+.|...++.|+.+ +++.+.+.|..++... ..+.+
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~---Pd~--~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t--y~~Li 182 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQ---PRL--RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE--LAALL 182 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCC---CCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH--HHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC---Ccc--ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH--HHHHH
Confidence 5777888999977554444 45542 111 11335566667888865 5666677887766431 23456
Q ss_pred HHHHHcCCHHHHHHHHhc
Q psy2184 140 DLAAQYGRLETVDTLVRT 157 (459)
Q Consensus 140 ~~a~~~~~~~~~~~l~~~ 157 (459)
...+..|+.+-+..+++.
T Consensus 183 ~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHH
Confidence 777788888777666653
No 123
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.73 E-value=69 Score=22.21 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=5.7
Q ss_pred HHHHHHhcCC
Q psy2184 81 IVRVLLCHGP 90 (459)
Q Consensus 81 ~v~~Ll~~g~ 90 (459)
+.+.|++.|.
T Consensus 72 lgq~Ll~~gv 81 (105)
T 2ysr_A 72 LLRKFLKNHV 81 (105)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHCCC
Confidence 4456666654
Done!