RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2184
(459 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 131 bits (332), Expect = 5e-37
Identities = 59/129 (45%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
N +D G + LH AA NGH E+V+LLL N A N D G +PLHLAA G+++IV++LL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 256 CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG 315
G +VN KD T LH AA+ G+ VV LL+H D R+ T L LAA+ G
Sbjct: 61 EKG---ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNG 117
Query: 316 RLETVDTLV 324
LE V L+
Sbjct: 118 HLEVVKLLL 126
Score = 115 bits (290), Expect = 5e-31
Identities = 59/121 (48%), Positives = 73/121 (60%), Gaps = 9/121 (7%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLHLA+ NGH L G N +D+ G + LH AA NGH EIV+LLL A N
Sbjct: 9 TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D G++PLHLAA GN+D+V++LL HG +VN KD T LH AA+ GH VV L
Sbjct: 69 RDKDGNTPLHLAARNGNLDVVKLLLKHG---ADVNARDKDGRTPLHLAAKNGHLEVVKLL 125
Query: 291 L 291
L
Sbjct: 126 L 126
Score = 110 bits (278), Expect = 3e-29
Identities = 56/163 (34%), Positives = 75/163 (46%), Gaps = 37/163 (22%)
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
N D G +PLHLAA G++++V++LL +G +VN D T LH AA+ GH +V
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGA---DVNAKDNDGRTPLHLAAKNGHLEIVK 57
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPL 179
LLE D R+ T L LAA+ G L+ V L
Sbjct: 58 LLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLL------------------------- 92
Query: 180 HLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222
L+ G N +D G + LH AA NGH E+V+LLL
Sbjct: 93 ---------LKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 107 bits (270), Expect = 3e-28
Identities = 49/109 (44%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
E+V+LLL N A N D G +PLHLAA G+++IV++LL G +VN KD T L
Sbjct: 21 EVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA---DVNARDKDGNTPL 77
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
H AA+ G+ VV LL+H D R+ T L LAA+ G LE V L+
Sbjct: 78 HLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 107 bits (270), Expect = 3e-28
Identities = 62/169 (36%), Positives = 77/169 (45%), Gaps = 44/169 (26%)
Query: 229 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 288
N D G +PLHLAA G++++V++LL +G +VN D T LH AA+ GH +V
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGA---DVNAKDNDGRTPLHLAAKNGHLEIVK 57
Query: 289 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPL 348
LLE D R+ T PL
Sbjct: 58 LLLEKGADVNARDKDGNT----------------------------------------PL 77
Query: 349 HLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
HLA+RNG+ VV LL+ G DVN R G T LH AA G LEVVK LL
Sbjct: 78 HLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 95.1 bits (237), Expect = 1e-23
Identities = 53/152 (34%), Positives = 65/152 (42%), Gaps = 41/152 (26%)
Query: 265 NLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
N +D T LH AA GH VV LLE+ D +++ T
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRT------------------ 42
Query: 325 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEA 383
PLHLA++NGH +V LL+ G DVN R G T LH A
Sbjct: 43 ----------------------PLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLA 80
Query: 384 ALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
A G L+VVK LL+HGAD+ D T L L
Sbjct: 81 ARNGNLDVVKLLLKHGADVNARDKDGRTPLHL 112
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 96.2 bits (240), Expect = 3e-24
Identities = 45/96 (46%), Positives = 61/96 (63%), Gaps = 5/96 (5%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
LH AA NG+ E+V+LLL A N+ DT + LHLAA GN++IV++LL HG +VN
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGA---DVN 55
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
KD TALH AA+ G+ +V LLEH D +++
Sbjct: 56 AKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 83.5 bits (207), Expect = 9e-20
Identities = 45/115 (39%), Positives = 62/115 (53%), Gaps = 24/115 (20%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
L AA+NGN+ E+V+LLL A N+ DT + LHLAA G
Sbjct: 1 LHLAAKNGNL-------------------ELVKLLLEKGADVNLGDT--DTALHLAARNG 39
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
N++IV++LL HG +VN KD TALH AA+ G+ +V LLEH D +++
Sbjct: 40 NLEIVKLLLEHGA---DVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 80.8 bits (200), Expect = 7e-19
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 70 LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPT 129
LHLAA GN+++V++LL G ++ D +TALH AA+ G+ +V LLEH D
Sbjct: 1 LHLAAKNGNLELVKLLLEKG-----ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVN 55
Query: 130 IRNSRHETALDLAAQYGRLETVDTLV 155
++ TAL LAA+ G LE V L+
Sbjct: 56 AKDKDGNTALHLAARNGNLEIVKLLL 81
Score = 80.8 bits (200), Expect = 7e-19
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 239 LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPT 298
LHLAA GN+++V++LL G ++ D +TALH AA+ G+ +V LLEH D
Sbjct: 1 LHLAAKNGNLELVKLLLEKG-----ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVN 55
Query: 299 IRNSRHETALDLAAQYGRLETVDTLV 324
++ TAL LAA+ G LE V L+
Sbjct: 56 AKDKDGNTALHLAARNGNLEIVKLLL 81
Score = 80.8 bits (200), Expect = 8e-19
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 8/93 (8%)
Query: 179 LHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVD 232
LHLA++NG+ L +G A+V +ALH AA NG+ EIV+LLL + A N D
Sbjct: 1 LHLAAKNGNLELVKLLLEKG--ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 233 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
G++ LHLAA GN++IV++LL HG + +
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 76.9 bits (190), Expect = 2e-17
Identities = 44/133 (33%), Positives = 59/133 (44%), Gaps = 43/133 (32%)
Query: 275 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY 334
LH AA+ G+ +V LLE D + ++
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD------------------------------- 29
Query: 335 NARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVK 393
+ LHLA+RNG+ +V LL+ G DVN + G TALH AA G LE+VK
Sbjct: 30 -----------TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVK 78
Query: 394 TLLEHGADLRIID 406
LLEHGAD+ + D
Sbjct: 79 LLLEHGADINLKD 91
Score = 67.3 bits (165), Expect = 5e-14
Identities = 38/133 (28%), Positives = 53/133 (39%), Gaps = 48/133 (36%)
Query: 106 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY 165
LH AA+ G+ +V LLE D + ++
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD------------------------------- 29
Query: 166 NARAQSTLFPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVE 219
+ LHLA+RNG+ L G N +D G +ALH AA NG+ EIV+
Sbjct: 30 -----------TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVK 78
Query: 220 LLLTNEASTNIVD 232
LLL + A N+ D
Sbjct: 79 LLLEHGADINLKD 91
Score = 64.6 bits (158), Expect = 4e-13
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 348 LHLASRNGHRSVVARLLQAGLDVNIRTASGTALHEAALCGKLEVVKTLLEHGADLRIIDS 407
LHLA++NG+ +V LL+ G DVN+ + TALH AA G LE+VK LLEHGAD+ D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD-TDTALHLAARNGNLEIVKLLLEHGADVNAKDK 59
Query: 408 KHNTVL 413
NT L
Sbjct: 60 DGNTAL 65
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 94.7 bits (236), Expect = 4e-21
Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 33/239 (13%)
Query: 46 REIVELLLTNEASTNIVDTKGSSPLHLAAW-----TGNVDIVRVLLCHGPSVPNVNLMTK 100
++V++LL N A N S+PLH + T +IV++LL +G NVN
Sbjct: 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGA---NVNAPDN 104
Query: 101 DNETALHCAAQY--GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR--LETVDTLVR 156
+ T L A +V LL++ + I+NS E L L + + L+ + L+
Sbjct: 105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLID 164
Query: 157 THPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKE 216
+ NA+ + L G N++D G++ LH+A N + E
Sbjct: 165 KGVDI----NAKNRVNYL--------------LSYGVPINIKDVYGFTPLHYAVYNNNPE 206
Query: 217 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN---LMTKDNE 272
V+ LL A+ N+V+ G +PLH+A N +I ++LL +GPS+ + L KD +
Sbjct: 207 FVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIETLLYFKDKD 265
Score = 88.6 bits (220), Expect = 4e-19
Identities = 74/329 (22%), Positives = 115/329 (34%), Gaps = 66/329 (20%)
Query: 121 LLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH 180
++ + L LA + ++ V L L + ST ++PLH
Sbjct: 21 IIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKIL------LDNGADIN-SSTKNNSTPLH 73
Query: 181 LASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLH 240
S ++L EIV+LLL A+ N D G +PL
Sbjct: 74 YLSNIKYNLTDVK----------------------EIVKLLLEYGANVNAPDNNGITPLL 111
Query: 241 LAAWT--GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH--TPVVSQLLEHSCD 296
A + IV LL +G NVN+ D E LH + ++ L++ D
Sbjct: 112 YAISKKSNSYSIVEYLLDNGA---NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD 168
Query: 297 PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 356
+N ++ YG V ++ + + PLH A N +
Sbjct: 169 INAKNR-----VNYLLSYG----VPINIK---------DVYGFT------PLHYAVYNNN 204
Query: 357 RSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
V LL G + N+ G T LH A L E+ K LL +G ++ I L
Sbjct: 205 PEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIET----LLY 260
Query: 416 LKQFPPHAVHDISTIINPVMSYEFLVSGG 444
K + + I + +M Y FL+ G
Sbjct: 261 FKDKDLNTITKIKMLKKSIM-YMFLLDPG 288
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 88.7 bits (219), Expect = 4e-20
Identities = 58/159 (36%), Positives = 75/159 (47%), Gaps = 5/159 (3%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAA-----WTGNVDI 250
+D G LH AA G +IV+LLL + A N D G +PLHLAA GN+++
Sbjct: 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126
Query: 251 VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDL 310
++LL G + NL +D T LH AA G +V LLE DP RNS TALD
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186
Query: 311 AAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH 349
AA+ GR+E V L+ L S +
Sbjct: 187 AAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRN 225
Score = 78.3 bits (192), Expect = 2e-16
Identities = 51/139 (36%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAA-----WTGNVDIVRVLLCHGPSVPNVNLMTKD 101
+IV+LLL + A N D G +PLHLAA GN+++ ++LL G + NL +D
Sbjct: 87 KIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED 146
Query: 102 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 161
T LH AA G +V LLE DP RNS TALD AA+ GR+E V L+ L
Sbjct: 147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHL 206
Query: 162 IQAYNARAQSTLFPASPLH 180
S +
Sbjct: 207 SLLKFNLEGVANANVSKRN 225
Score = 66.8 bits (162), Expect = 2e-12
Identities = 46/172 (26%), Positives = 66/172 (38%), Gaps = 26/172 (15%)
Query: 96 NLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
D LH AA G +V LL D +++ +T L LAA G
Sbjct: 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPP------ 120
Query: 156 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHK 215
G I+ L N++D G + LH AALNG
Sbjct: 121 ---EGNIEVAKL-------------LLEAGADLDV----NNLRDEDGNTPLHWAALNGDA 160
Query: 216 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLM 267
+IVELLL A N ++ G + L AA G +++V++LL G + +
Sbjct: 161 DIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212
Score = 61.8 bits (149), Expect = 6e-11
Identities = 59/192 (30%), Positives = 76/192 (39%), Gaps = 52/192 (27%)
Query: 220 LLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAA 279
L L + D G PLH AA G+ IV++LL G +VN D +T LH AA
Sbjct: 58 LKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGA---DVNAKDADGDTPLHLAA 114
Query: 280 QYGHTP-----VVSQLLEH---SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLI 331
G+ P V LLE +R+ T
Sbjct: 115 LNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNT------------------------- 149
Query: 332 QAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLE 390
PLH A+ NG +V LL+AG D N R + G TAL AA G++E
Sbjct: 150 ---------------PLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIE 194
Query: 391 VVKTLLEHGADL 402
+VK LL+ G L
Sbjct: 195 LVKLLLDKGLHL 206
Score = 51.0 bits (121), Expect = 3e-07
Identities = 51/225 (22%), Positives = 71/225 (31%), Gaps = 47/225 (20%)
Query: 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
SAL ++ LL + + L+L + L
Sbjct: 1 SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLE----LALLPAASLSEL 56
Query: 259 PSV----PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY 314
++ D LH AA G +V LL D +++ +T L LAA
Sbjct: 57 LLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN 116
Query: 315 GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGL---DVN 371
G G+ V LL+AG N
Sbjct: 117 GNPP-----------------------------------EGNIEVAKLLLEAGADLDVNN 141
Query: 372 IRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
+R G T LH AAL G ++V+ LLE GAD +S T LD
Sbjct: 142 LRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 85.4 bits (211), Expect = 7e-18
Identities = 75/317 (23%), Positives = 135/317 (42%), Gaps = 53/317 (16%)
Query: 6 CVVFSVMGKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTK 65
C+ SV L++A R+G+ + IVEL + + A N ++TK
Sbjct: 27 CINISVDETTTPLIDAIRSGDAK-------------------IVELFIKHGADINHINTK 67
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
PL A G DI+++L+ +G + + + + + +L+
Sbjct: 68 IPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDM-------------IKTILDCG 114
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL-IQAYNARAQSTLFPASPLHLASR 184
D I+++ +T L A + G LE++ L + I+ N P+H+A +
Sbjct: 115 IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNG--------CYPIHIAIK 166
Query: 185 NGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSP 238
+ L +G ANV+D++G S LH+AA G ++LL+ + G +P
Sbjct: 167 HNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTP 226
Query: 239 LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYG-HTPVVSQLLEHSCDP 297
LH A N + +L+ + ++N D T LH A ++ LL H D
Sbjct: 227 LH-NAIIHNRSAIELLINNA----SINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADI 281
Query: 298 TIRNSRHETALDLAAQY 314
+I++++ E +D A +Y
Sbjct: 282 SIKDNKGENPIDTAFKY 298
Score = 68.8 bits (168), Expect = 1e-12
Identities = 81/372 (21%), Positives = 138/372 (37%), Gaps = 97/372 (26%)
Query: 47 EIVELLLTNEAS-TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA 105
E +E ++ N+ + NI + ++PL A +G+ IV + + HG + ++N
Sbjct: 15 EAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPH---P 71
Query: 106 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY 165
L A + G ++ L+++ D +I L + + T+
Sbjct: 72 LLTAIKIGAHDIIKLLIDNGVDTSI----------LPIPCIEKDMIKTI----------- 110
Query: 166 NARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNE 225
L G N++D+ + LH+A G E +++L
Sbjct: 111 -----------------------LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG 147
Query: 226 ASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTP 285
A NI D G P+H+A DI+++LL G + NV + E+ LH AA+YG
Sbjct: 148 ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG-AYANVK--DNNGESPLHNAAEYGDYA 204
Query: 286 VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA 345
+ L++H + T
Sbjct: 205 CIKLLIDHGNHIMNKCKNGFT--------------------------------------- 225
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAAL--CGKLEVVKTLLEHGADL 402
PLH A + +RS + LL +N + G T LH A C +++ LL H AD+
Sbjct: 226 -PLHNAIIH-NRSAIE-LLINNASINDQDIDGSTPLHHAINPPCDI-DIIDILLYHKADI 281
Query: 403 RIIDSKHNTVLD 414
I D+K +D
Sbjct: 282 SIKDNKGENPID 293
Score = 51.9 bits (124), Expect = 4e-07
Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 34/210 (16%)
Query: 212 NGHKEIVELLLTNEAS-TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKD 270
+G E +E ++ N+ + NI + ++PL A +G+ IV + + HG + ++N
Sbjct: 11 SGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPH 70
Query: 271 NETALHCAAQYGHTPVVSQLLEHSCD------PTIRNSRHETALDLAAQYGRLETVDTLV 324
L A + G ++ L+++ D P I +T LD +D +
Sbjct: 71 ---PLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCG--------IDVNI 119
Query: 325 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASGT-ALHEA 383
+ A+ F LH A + G + L + G DVNI +G +H A
Sbjct: 120 KD-----------AELKTF----LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA 164
Query: 384 ALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
+++K LLE GA + D+ + L
Sbjct: 165 IKHNFFDIIKLLLEKGAYANVKDNNGESPL 194
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 85.1 bits (210), Expect = 2e-17
Identities = 113/432 (26%), Positives = 179/432 (41%), Gaps = 53/432 (12%)
Query: 48 IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
I E+LL A N D +P+H AA GN +V +LL +G +VN++ D+ + L
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYG---ADVNIIALDDLSVLE 216
Query: 108 CAAQYGHTPVVSQLLEHSCD---------PTIRNSRHETALDLAAQYGRLETVDTLVRTH 158
CA + + ++++ + IRN ET+L L + ++D T
Sbjct: 217 CAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNT- 275
Query: 159 PGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGH-KEI 217
L A A + S L P L RG N ++ G + L+ A NG+ E
Sbjct: 276 -PLHHASQAPSLSRLVP-----------KLLERGADVNAKNIKGETPLYLMAKNGYDTEN 323
Query: 218 VELLLTNEASTNIVDTKGSSPLHLAAWTG-NVDIVRVLLCHGPSVPNVNLMTKDNETALH 276
+ L+ A N D +PLH A+ N DIV LL G NVN ++T +H
Sbjct: 324 IRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELG---ANVNARDYCDKTPIH 380
Query: 277 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR--LETVDTLVRTHPGLIQAY 334
AA + +++ LL++ D + + TAL A G +V TL+ +
Sbjct: 381 YAAVRNNVVIINTLLDYGADIEALSQKIGTALHFAL-CGTNPYMSVKTLID------RGA 433
Query: 335 NARAQSTLFPASPLHLASRNGHR-SVVARLLQAGLDVNIRTASGTALHEAALCGKLEVVK 393
N +++ ++PLH A + + V+ LL G DVN AL +V
Sbjct: 434 NVNSKNK-DLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIAL-EYHGIVN 491
Query: 394 TLLEHGADLRIIDSKHNTVLDLLKQF---------PPHAVHDISTIINPV--MSYEFLVS 442
LL +GA+LR H ++ D + F HDI +NP+ + F
Sbjct: 492 ILLHYGAELRDSRVLHKSLNDNMFSFRYIIAHICIQDFIRHDIRNEVNPLKRVPTRFTSL 551
Query: 443 GGGTRSVSDTDD 454
+ + +DD
Sbjct: 552 RESFKEIIQSDD 563
Score = 62.0 bits (150), Expect = 3e-10
Identities = 80/308 (25%), Positives = 128/308 (41%), Gaps = 53/308 (17%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP------------- 93
++V LLL+ A NI+ S L A + N+D ++ ++ + ++
Sbjct: 192 KMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNE 251
Query: 94 -------------NVNLMTKDNETALHCAAQYGHTP----VVSQLLEHSCDPTIRNSRHE 136
+VN + T LH A+Q P +V +LLE D +N + E
Sbjct: 252 DLETSLLLYDAGFSVNSIDDCKNTPLHHASQ---APSLSRLVPKLLERGADVNAKNIKGE 308
Query: 137 TALDLAAQYG-RLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS---RNGHS---- 188
T L L A+ G E + TL+ + + A L+ +PLH AS RN
Sbjct: 309 TPLYLMAKNGYDTENIRTLI------MLGADVNAADRLY-ITPLHQASTLDRNKDIVITL 361
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L G N +D + +H+AA+ + I+ LL A + K + LH A N
Sbjct: 362 LELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNP 421
Query: 249 DI-VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTP-VVSQLLEHSCDPTIRNSRHET 306
+ V+ L+ G NVN KD T LH A + V+ LL++ D N +++
Sbjct: 422 YMSVKTLIDRG---ANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQY 478
Query: 307 ALDLAAQY 314
L +A +Y
Sbjct: 479 PLLIALEY 486
Score = 52.8 bits (126), Expect = 3e-07
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 18/235 (7%)
Query: 43 PLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG-NVDIVRVLLCHGPSVPNVNLMTKD 101
P +V LL A N + KG +PL+L A G + + +R L+ G +VN +
Sbjct: 284 PSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLG---ADVNAADRL 340
Query: 102 NETALHCAAQYG-HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 160
T LH A+ + +V LLE + R+ +T + AA + ++TL+ +
Sbjct: 341 YITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLL-DYGA 399
Query: 161 LIQAYNARAQSTLFPASPLHLASRNGHS-----LRRGPGANVQDSSGYSALHHAALNGHK 215
I+A + + + L A L N + + RG N ++ + LH+A K
Sbjct: 400 DIEALSQKIGTALHFA----LCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCK 455
Query: 216 -EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTK 269
+++E+LL N A N ++ + PL +A IV +LL +G + + ++ K
Sbjct: 456 LDVIEMLLDNGADVNAINIQNQYPLLIA--LEYHGIVNILLHYGAELRDSRVLHK 508
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 75.4 bits (186), Expect = 1e-14
Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 31/221 (14%)
Query: 176 ASPLHLASRNGHSL-------RRGPGANVQDSSGYSALH-HAA-LNGHKEIVELLLTNEA 226
+PLHL N +L + G N +D G + LH + + N + +++ LLL A
Sbjct: 84 FTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGA 143
Query: 227 STNIVDTKGSSPLH--LAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNE--TALHCAAQYG 282
N +D G +PL L + NV+++R+L+ G ++ D+ + LH Q
Sbjct: 144 DVNALDLYGMTPLAVLLKSRNANVELLRLLIDAG-----ADVYAVDDRFRSLLHHHLQSF 198
Query: 283 HT--PVVSQLLEHSCDPTIRNSRHETALDLAAQYG--RLETVDTLVRTHPGL-IQAYNAR 337
+V +L+ CDP + T L A + V L+ G+ I A N
Sbjct: 199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA--GISINARNRY 256
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASGT 378
Q+ PLH A+ + RL+ G D+N ++ G
Sbjct: 257 GQT------PLHYAAVFNNPRACRRLIALGADINAVSSDGN 291
Score = 68.9 bits (169), Expect = 2e-12
Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 27/252 (10%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLH--LAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNET 104
++++LL+ A N D G +PLH L+ + N ++R+LL G +VN + T
Sbjct: 98 DVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGA---DVNALDLYGMT 154
Query: 105 ALHCAAQYGHTPV--VSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLI 162
L + + V + L++ D + R + L Q + +VR LI
Sbjct: 155 PLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFK--PRARIVRE---LI 209
Query: 163 QAYNARAQSTLFPASPLHLA---SRNGHS-----LRRGPGANVQDSSGYSALHHAALNGH 214
+A A + + +PLH S S L G N ++ G + LH+AA+ +
Sbjct: 210 RAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNN 269
Query: 215 KEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA 274
L+ A N V + G++PL L N VR L P+ +
Sbjct: 270 PRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAAL---AKNPSAETV----AAT 322
Query: 275 LHCAAQYGHTPV 286
L+ A+ G
Sbjct: 323 LNTASVAGGDIP 334
Score = 52.3 bits (126), Expect = 3e-07
Identities = 61/242 (25%), Positives = 87/242 (35%), Gaps = 54/242 (22%)
Query: 189 LRRGPGANVQDSSGYSALH---HAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWT 245
L G N + G + LH H + K+IV LLL A N + G +PLHL +
Sbjct: 34 LAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYN 93
Query: 246 GNV-DIVRVLLCHGPSVPNVNLMTKDNETALH--CAAQYGHTPVVSQLLEHSCDPTIRNS 302
D++++L+ G +VN K T LH + + V+ LL D
Sbjct: 94 ATTLDVIKLLIKAGA---DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN---- 146
Query: 303 RHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH--LASRNGHRSVV 360
ALDL YG +PL L SRN + ++
Sbjct: 147 ----ALDL---YGM-----------------------------TPLAVLLKSRNANVELL 170
Query: 361 ARLLQAGLDVNIRTASG-TALHEAALCGKL--EVVKTLLEHGADLRIIDSKHNTVLDLLK 417
L+ AG DV + LH K +V+ L+ G D D NT L +
Sbjct: 171 RLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMA 230
Query: 418 QF 419
Sbjct: 231 TG 232
Score = 32.3 bits (74), Expect = 0.52
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 45 AREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNET 104
R +V LL S N + G +PLH AA N R L+ G ++N ++ D T
Sbjct: 236 KRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALG---ADINAVSSDGNT 292
Query: 105 AL 106
L
Sbjct: 293 PL 294
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 72.3 bits (177), Expect = 9e-14
Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 31/268 (11%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
A G +DI R LL G N N D + + A ++ + + L++H P ++
Sbjct: 9 AILFGELDIARRLLDIGI---NPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY 65
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA--SPLHLASRNGHS-- 188
E+ L A + G ++ V+ L+ A + +PLHLA+
Sbjct: 66 PDIESELHDAVEEGDVKAVEELLDL--------GKFADDVFYKDGMTPLHLATILKKLDI 117
Query: 189 ----LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAW 244
+ RG ++ ++ +S LH A + G + +ELL+ ++A +I D G +PL +A
Sbjct: 118 MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA 177
Query: 245 TGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTP-VVSQLLEHSCDP----TI 299
G++ I ++LL G N++ K+ A C A + +V ++ D I
Sbjct: 178 KGDIAICKMLLDSG---ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMI 234
Query: 300 RNSRHETALDLAAQYG---RLETVDTLV 324
T LD+ E +D L+
Sbjct: 235 EGEEC-TILDMICNMCTNLESEAIDALI 261
Score = 61.9 bits (150), Expect = 2e-10
Identities = 59/239 (24%), Positives = 101/239 (42%), Gaps = 20/239 (8%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L G N + G S + A E ++LL+ + A ++ S LH A G+V
Sbjct: 22 LDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
V LL G +V KD T LH A ++ L+ DP I N+ + L
Sbjct: 82 KAVEELLDLGKFADDV--FYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPL 139
Query: 309 DLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTL---FPASPLHLASRNGHRSVVARLLQ 365
LA G ++ ++ L+ +A + +PL +A G ++ LL
Sbjct: 140 HLAVMMGDIKGIELLID----------HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD 189
Query: 366 AGLDVNIRTASG--TALHEAALCGKLEVVKTLLEHGADLRI---IDSKHNTVLDLLKQF 419
+G +++ +G AL A K+++V+ ++ GAD I I+ + T+LD++
Sbjct: 190 SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNM 248
Score = 53.5 bits (128), Expect = 1e-07
Identities = 52/223 (23%), Positives = 84/223 (37%), Gaps = 40/223 (17%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
E ++LL+ + A ++ S LH A G+V V LL G +V KD T L
Sbjct: 49 EAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDV--FYKDGMTPL 106
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
H A ++ L+ DP I N+ + L LA G ++ ++ L+
Sbjct: 107 HLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID---------- 156
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
H A +++D G + L A G I ++LL + A
Sbjct: 157 -------------HKAC-----------LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA 192
Query: 227 STNIVDTKGSSPLHLAAWTGN-VDIVRVLLCHGPSVPNVNLMT 268
+ + G A N +DIVR+ + G + N+M
Sbjct: 193 NIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG---ADCNIMF 232
Score = 37.3 bits (86), Expect = 0.016
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 13/149 (8%)
Query: 271 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 330
++ AL A +G + +LL+ +P + + LA ++ E + L++ G
Sbjct: 2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH--GA 59
Query: 331 IQAYNARAQSTLFPA--SPLHLASRNGHRSVVARLLQAGLDVN--IRTASGTALHEAALC 386
I +P S LH A G V LL G + T LH A +
Sbjct: 60 IPDVK-------YPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATIL 112
Query: 387 GKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
KL+++K L+ GAD I ++ + L L
Sbjct: 113 KKLDIMKLLIARGADPDIPNTDKFSPLHL 141
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 72.2 bits (177), Expect = 1e-13
Identities = 70/278 (25%), Positives = 115/278 (41%), Gaps = 45/278 (16%)
Query: 69 PLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDP 128
PLH A N+D+V+ LL G NVN + T LH + + + +++
Sbjct: 40 PLHQAVEARNLDVVKSLLTRGH---NVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC 96
Query: 129 TIRNS----------------------RHETALDLAAQYGRLETVDTLVRTH-PGLIQAY 165
++ + R++ + Y ++ D ++ L+ +Y
Sbjct: 97 SVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSY 156
Query: 166 ----NARAQSTLFPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHK 215
N + + + LH A+ N L G N+ D + S LHHA + +K
Sbjct: 157 GADINMKDRHKG--NTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNK 214
Query: 216 EIVELLLTNEASTNIVDTKGSSPLHLA-AWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA 274
IV +LL N AST+ D G++PLH++ + + DI+++LL HG V N TA
Sbjct: 215 PIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV-NAK-SYILGLTA 272
Query: 275 LHCAAQYGHTP-VVSQLLEHSCDPTIRNSRHETALDLA 311
LH + + + LLE+ D NS T L A
Sbjct: 273 LHSSI---KSERKLKLLLEYGADINSLNSYKLTPLSSA 307
Score = 68.8 bits (168), Expect = 2e-12
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 49/202 (24%)
Query: 216 EIVELLLTNEASTNIVD-TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA 274
EI +LLL+ A N+ D KG++ LH A + + +LL +G NVN+ K N +
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGA---NVNIPDKTNNSP 204
Query: 275 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY 334
LH A ++ + P+V LLE+ R+ G
Sbjct: 205 LHHAVKHYNKPIVHILLENGASTDARDK-----------CGN------------------ 235
Query: 335 NARAQSTLFPASPLHLA-SRNGHRSVVARLLQAGLDVNIRTA--SGTALHEAALCGKLEV 391
+PLH++ ++ LL+ G+DVN ++ TALH +
Sbjct: 236 -----------TPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERK 282
Query: 392 VKTLLEHGADLRIIDSKHNTVL 413
+K LLE+GAD+ ++S T L
Sbjct: 283 LKLLLEYGADINSLNSYKLTPL 304
Score = 66.8 bits (163), Expect = 8e-12
Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 53/254 (20%)
Query: 20 EAARNGNIQVVEKILSQRAK--------------RSGPLAREIVELLLTNEASTNIVD-T 64
+A N N+++ + IL+ R K + + EI +LLL+ A N+ D
Sbjct: 107 DAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRH 166
Query: 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 124
KG++ LH A + + +LL +G NVN+ K N + LH A ++ + P+V LLE+
Sbjct: 167 KGNTALHYATENKDQRLTELLLSYG---ANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN 223
Query: 125 SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR 184
R+ T L ++ G + D L L + A+S + + LH + +
Sbjct: 224 GASTDARDKCGNTPLHISV--GYCKDYDILKLL---LEHGVDVNAKSYILGLTALHSSIK 278
Query: 185 NGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAW 244
+ + ++LLL A N +++ +PL A
Sbjct: 279 S-----------------------------ERKLKLLLEYGADINSLNSYKLTPLSSAVK 309
Query: 245 T-GNVDIVRVLLCH 257
++I R+L+ +
Sbjct: 310 QYLCINIGRILISN 323
Score = 46.0 bits (109), Expect = 3e-05
Identities = 63/263 (23%), Positives = 103/263 (39%), Gaps = 42/263 (15%)
Query: 162 IQAYNARAQS-TLFPASPLHLA--SRN----GHSLRRGPGANVQDSSGYSALH----HAA 210
I + S +L P PLH A +RN L RG N D + LH
Sbjct: 23 IDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPN 82
Query: 211 LNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGP----SVPNVNL 266
G KE++ + +V K A NV+I +++L + ++ V +
Sbjct: 83 KLGMKEMIRSINKCSVFYTLVAIKD------AFNNRNVEIFKIILTNRYKNIQTIDLVYI 136
Query: 267 MTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE--TALDLAAQYGRLETVDTLV 324
K + + + LL + D +++ RH+ TAL A + + L+
Sbjct: 137 DKKSKDDIIE-------AEITKLLLSYGADINMKD-RHKGNTALHYATENKDQRLTELLL 188
Query: 325 RTHPGLIQAYNARAQS-TLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHE 382
+Y A SPLH A ++ ++ +V LL+ G + R G T LH
Sbjct: 189 --------SYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHI 240
Query: 383 A-ALCGKLEVVKTLLEHGADLRI 404
+ C +++K LLEHG D+
Sbjct: 241 SVGYCKDYDILKLLLEHGVDVNA 263
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 53.4 bits (129), Expect = 1e-09
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
G +ALH AA++G E+V+ LL N D G++ LH+AA GN++++++LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 51.1 bits (123), Expect = 7e-09
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
G + LH AA +G +++V+ LL G ++N +D TALH AA+ G+ V+ LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGV---DINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 51.1 bits (123), Expect = 7e-09
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
G + LH AA +G +++V+ LL G ++N +D TALH AA+ G+ V+ LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGV---DINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 49.5 bits (119), Expect = 3e-08
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 104 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
TALH AA G +V LLE D + TAL +AA+ G LE + L+
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 49.5 bits (119), Expect = 3e-08
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 273 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
TALH AA G +V LLE D + TAL +AA+ G LE + L+
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 48.4 bits (116), Expect = 8e-08
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
+ LH A+ +G +V LL+ G+D+N G TALH AA G LEV+K LL
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 41.8 bits (99), Expect = 2e-05
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 177 SPLHLASRNGH------SLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222
+ LH A+ +G L +G N D G +ALH AA NG+ E+++LLL
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 38.0 bits (89), Expect = 3e-04
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 86
E+V+ LL N D G++ LH+AA GN++++++LL
Sbjct: 15 ELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 37.6 bits (88), Expect = 5e-04
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 378 TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
TALH+AA+ G+LE+VK LLE G D+ D NT L +
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHI 40
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 49.7 bits (119), Expect = 3e-08
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 189 LRRGPGA-NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLA 242
L GP N D +G + LH AA G E+V+ LL N+ D+ G + L LA
Sbjct: 2 LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 47.3 bits (113), Expect = 2e-07
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 85 LLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 142
LL HGP N + T LH AA+YG +V LL+ D +R+S TALDLA
Sbjct: 1 LLEHGPIDLNAT--DGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 47.3 bits (113), Expect = 2e-07
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 254 LLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 311
LL HGP N + T LH AA+YG +V LL+ D +R+S TALDLA
Sbjct: 1 LLEHGPIDLNAT--DGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 44.7 bits (106), Expect = 2e-06
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 51 LLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCA 109
LL N D G++PLHLAA G +++V+ LL G ++NL D TAL A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPG---VDLNLRDSDGLTALDLA 56
Score = 44.7 bits (106), Expect = 2e-06
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 220 LLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCA 278
LL N D G++PLHLAA G +++V+ LL G ++NL D TAL A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPG---VDLNLRDSDGLTALDLA 56
Score = 42.0 bits (99), Expect = 2e-05
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 363 LLQAGLDVNIRT--ASGTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
LL+ G T T LH AA G LE+V+ LL+ G DL + DS T LDL
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55
Score = 35.0 bits (81), Expect = 0.004
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 330 LIQAYNARAQST-LFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEA 383
L++ +T +PLHLA++ G +V LL+ G+D+N+R + G TAL A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 28.1 bits (63), Expect = 1.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLA 73
E+V+ LL N+ D+ G + L LA
Sbjct: 30 ELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 52.6 bits (126), Expect = 3e-07
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 206 LHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
L A +G +LLT A N D G +PLH+A G+V +VRVLL G +
Sbjct: 86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFG---ADPT 142
Query: 266 LMTKDNETALHCAAQYGHTPVVSQLLEHS 294
L+ KD +T L A + G VV L HS
Sbjct: 143 LLDKDGKTPLELAEENGFREVVQLLSRHS 171
Score = 51.8 bits (124), Expect = 5e-07
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 49 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 108
+LLT A N D G +PLH+A G+V +VRVLL G + L+ KD +T L
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFG---ADPTLLDKDGKTPLEL 154
Query: 109 AAQYGHTPVVSQLLEHS 125
A + G VV L HS
Sbjct: 155 AEENGFREVVQLLSRHS 171
Score = 48.4 bits (115), Expect = 6e-06
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 358 SVVAR-LLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
+V AR LL G D N R G T LH A G ++VV+ LLE GAD ++D T L+L
Sbjct: 95 AVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLEL 154
Query: 416 LKQFPPHAVHDISTIINPVMSYEFLVSGGGTRSVSDTDDMQE 457
++ + ++ + + G + D+ +
Sbjct: 155 AEE------NGFREVVQLLSRHSQCHFELGANAKPDSFTGKP 190
Score = 46.8 bits (111), Expect = 2e-05
Identities = 38/108 (35%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 71 HLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTI 130
LAA +G+ R+LL G + N D T LH A GH VV LLE DPT+
Sbjct: 88 QLAA-SGDAVGARILLTGGA---DPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL 143
Query: 131 RNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASP 178
+ +T L+LA + G E V L R H A A+ F P
Sbjct: 144 LDKDGKTPLELAEENGFREVVQLLSR-HSQCHFELGANAKPDSFTGKP 190
Score = 46.8 bits (111), Expect = 2e-05
Identities = 38/108 (35%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 240 HLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTI 299
LAA +G+ R+LL G + N D T LH A GH VV LLE DPT+
Sbjct: 88 QLAA-SGDAVGARILLTGGA---DPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL 143
Query: 300 RNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASP 347
+ +T L+LA + G E V L R H A A+ F P
Sbjct: 144 LDKDGKTPLELAEENGFREVVQLLSR-HSQCHFELGANAKPDSFTGKP 190
Score = 44.9 bits (106), Expect = 8e-05
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L G N +D G + LH A NGH ++V +LL A ++D G +PL LA G
Sbjct: 102 LTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR 161
Query: 249 DIVRVLLCH 257
++V++L H
Sbjct: 162 EVVQLLSRH 170
Score = 38.0 bits (88), Expect = 0.011
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHG----- 399
+PLH+A NGH VV LL+ G D + G T L A G EVV+ L H
Sbjct: 117 TPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFE 176
Query: 400 ADLRIIDSKHNTVLDLLKQFPPHAVH-DISTIINPVM 435
L+ P + H D S + P+M
Sbjct: 177 LGANAKPDSFTGKPPSLEDSPISSHHPDFSAVPQPMM 213
Score = 31.8 bits (72), Expect = 0.78
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222
+PLH+A NGH L G + D G + L A NG +E+V+LL
Sbjct: 117 TPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLS 168
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 52.6 bits (126), Expect = 3e-07
Identities = 50/195 (25%), Positives = 77/195 (39%), Gaps = 46/195 (23%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
A G+ ++E LL + +I D+KG +PLH+AA G D V VLL H NV++
Sbjct: 532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHA---CNVHIRD 588
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
+ TAL A H + L + S A DL
Sbjct: 589 ANGNTALWNAISAKHHKIFRILYHFA-----SISDPHAAGDL------------------ 625
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCG 387
L A++ + + LL+ GL+V+ G TAL A
Sbjct: 626 -------------------LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAED 666
Query: 388 KLEVVKTLLEHGADL 402
+++V+ L+ +GAD+
Sbjct: 667 HVDMVRLLIMNGADV 681
Score = 52.2 bits (125), Expect = 5e-07
Identities = 54/221 (24%), Positives = 80/221 (36%), Gaps = 62/221 (28%)
Query: 15 DQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAA 74
+LL A GN ++E++L +AK +I D+KG +PLH+AA
Sbjct: 526 ASNLLTVASTGNAALLEELL--KAKLD-----------------PDIGDSKGRTPLHIAA 566
Query: 75 WTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL--LEHSCDPTIRN 132
G D V VLL H NV++ + TAL A H + L DP
Sbjct: 567 SKGYEDCVLVLLKHAC---NVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAG 623
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
L AA+ L + L L++G
Sbjct: 624 D----LLCTAAKRNDLTAMKEL----------------------------------LKQG 645
Query: 193 PGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDT 233
+ +D G +AL A H ++V LL+ N A + +T
Sbjct: 646 LNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANT 686
Score = 51.8 bits (124), Expect = 5e-07
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L+ ++ DS G + LH AA G+++ V +LL + + +I D G++ L A +
Sbjct: 545 LKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHH 604
Query: 249 DIVRVLL-CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETA 307
I R+L S P+ L AA+ + +LL+ + + + TA
Sbjct: 605 KIFRILYHFASISDPHA------AGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATA 658
Query: 308 LDLAAQYGRLETVDTLV 324
L +A ++ V L+
Sbjct: 659 LQVAMAEDHVDMVRLLI 675
Score = 42.5 bits (100), Expect = 4e-04
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 26/87 (29%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRI 404
+PLH+A+ G+ V LL+ +V+IR A+G TAL A
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA--------------------- 598
Query: 405 IDSKHNTVLDLLKQFP----PHAVHDI 427
I +KH+ + +L F PHA D+
Sbjct: 599 ISAKHHKIFRILYHFASISDPHAAGDL 625
Score = 41.4 bits (97), Expect = 0.001
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 37/127 (29%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+PLH+A+ G+ L+ +++D++G +AL +A H +I +L + ++
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP 619
Query: 231 ----------------------------VDTK---GSSPLHLAAWTGNVDIVRVLLCHGP 259
VD++ G++ L +A +VD+VR+L+ +G
Sbjct: 620 HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA 679
Query: 260 SVPNVNL 266
V N
Sbjct: 680 DVDKANT 686
Score = 39.9 bits (93), Expect = 0.003
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 20/152 (13%)
Query: 257 HGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR 316
H NL+T A G+ ++ +LL+ DP I +S+ T L +AA G
Sbjct: 520 HDDPNMASNLLT---------VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGY 570
Query: 317 LETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTAS 376
+ V L++ H + +A + L+ A +++ H + L + A
Sbjct: 571 EDCVLVLLK-HACNVHIRDANGNTALWNA----ISA--KHHKIFRILYHFASISDPHAA- 622
Query: 377 GTALHEAALCGKLEVVKTLLEHGADLRIIDSK 408
G L AA L +K LL+ G + +DS+
Sbjct: 623 GDLLCTAAKRNDLTAMKELLKQGLN---VDSE 651
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 49.7 bits (119), Expect = 2e-06
Identities = 47/195 (24%), Positives = 70/195 (35%), Gaps = 29/195 (14%)
Query: 246 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYG-HTPVVSQLLEHSCDPTIRNSRH 304
G++ V L P N+N + +AL AA + + LL SC +
Sbjct: 28 GDLASVYRDL-EEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAV----G 82
Query: 305 ETALDLAAQ--YGRLETVDTLVRTHPGLIQAY---NARAQSTLFPA-SPLHLASRNGHRS 358
+T L + +E + + N + S P + LHLA+ +
Sbjct: 83 DTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYE 142
Query: 359 VVARLLQAGLDVNIRTASGTALHE----------------AALCGKLEVVKTLLEHGADL 402
+V LL+ G V R A G + AA G +V L E AD+
Sbjct: 143 IVKLLLERGASVPAR-ACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI 201
Query: 403 RIIDSKHNTVLDLLK 417
DS NT+L LL
Sbjct: 202 LTADSLGNTLLHLLV 216
Score = 48.9 bits (117), Expect = 4e-06
Identities = 40/146 (27%), Positives = 53/146 (36%), Gaps = 35/146 (23%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEASTNI-------VDTK-------GSSPLHLAAWTGN 247
G +ALH AA + EIV+LLL AS V ++ G SPL+ AA G+
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS 187
Query: 248 VDIVRVLLCHGPSV-------------PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
IV +L + + K L C LL+
Sbjct: 188 PSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNF----ALSLLDKL 243
Query: 295 CDPT----IRNSRHETALDLAAQYGR 316
D I N + T L LAA+ GR
Sbjct: 244 RDSKELEVILNHQGLTPLKLAAKEGR 269
Score = 48.9 bits (117), Expect = 4e-06
Identities = 54/238 (22%), Positives = 83/238 (34%), Gaps = 45/238 (18%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
LL A + VE IL R+ L L N+ T+ T G + LHLAA
Sbjct: 85 LLHAISLEYVDAVEAILLHLLAA----FRKSGPLELANDQYTSEF-TPGITALHLAAHRQ 139
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET 137
N +IV++LL G SVP ++ + +
Sbjct: 140 NYEIVKLLLERGASVP----------ARACGDF----------FVKSQGVDSFYHGESP- 178
Query: 138 ALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV 197
L+ AA G V L PA L A G++L
Sbjct: 179 -LNAAACLGSPSIVALLSE-----------------DPADIL-TADSLGNTLLHLLVMEN 219
Query: 198 QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
+ + Y L N +++ L ++ I++ +G +PL LAA G + + R+ L
Sbjct: 220 EFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKL 277
Score = 41.6 bits (98), Expect = 7e-04
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 27/134 (20%)
Query: 205 ALHHAALNGHKEIVELLLT---------------NEASTNIVDTKGSSPLHLAAWTGNVD 249
L HA + + VE +L N+ T+ T G + LHLAA N +
Sbjct: 84 TLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEF-TPGITALHLAAHRQNYE 142
Query: 250 IVRVLLCHGPSVP-----NVNLMTKDN------ETALHCAAQYGHTPVVSQLLEHSCDPT 298
IV++LL G SVP + + ++ E+ L+ AA G +V+ L E D
Sbjct: 143 IVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL 202
Query: 299 IRNSRHETALDLAA 312
+S T L L
Sbjct: 203 TADSLGNTLLHLLV 216
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 41.8 bits (99), Expect = 1e-05
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 378 TALHEAALCGKLEVVKTLLEHGADLRIID 406
T LH AA G LEVVK LLE GAD+ D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 41.4 bits (98), Expect = 1e-05
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEASTNIVD 232
G + LH AA NGH E+V+LLL A N D
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 41.4 bits (98), Expect = 1e-05
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 101 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
D T LH AA+ GH VV LLE D R+
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 41.4 bits (98), Expect = 1e-05
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 270 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
D T LH AA+ GH VV LLE D R+
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 39.8 bits (94), Expect = 5e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRT 374
+PLHLA+RNGH VV LL+AG DVN R
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSV 92
G++PLHLAA G++++V++LL G V
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADV 28
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 234 KGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
G++PLHLAA G++++V++LL G V
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADV 28
Score = 25.6 bits (57), Expect = 5.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 136 ETALDLAAQYGRLETVDTLVR 156
T L LAA+ G LE V L+
Sbjct: 3 NTPLHLAARNGHLEVVKLLLE 23
Score = 25.6 bits (57), Expect = 5.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 305 ETALDLAAQYGRLETVDTLVR 325
T L LAA+ G LE V L+
Sbjct: 3 NTPLHLAARNGHLEVVKLLLE 23
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 45.4 bits (107), Expect = 3e-05
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 7/205 (3%)
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
D G S L+ A NV +V LL G NL+ +NE LH AA T +V LL
Sbjct: 27 DVHGHSALYYAIADNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIVKILL 81
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 182
D + + + TAL A G ++TV V+ + L+ +++ + A L+
Sbjct: 82 FSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV 141
Query: 183 SRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSP-LHL 241
S + L P + + S +H NGH +++ LLL STN ++ P + L
Sbjct: 142 SIVSYFLSEIP-STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKL 200
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNL 266
A ++++++ L + ++ +VNL
Sbjct: 201 AIDNKDLEMLQALFKYDINIYSVNL 225
Score = 36.9 bits (85), Expect = 0.016
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
D G S L+ A NV +V LL G NL+ +NE LH AA T +V LL
Sbjct: 27 DVHGHSALYYAIADNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIVKILL 81
Query: 292 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
D + + + TAL A G ++TV V+
Sbjct: 82 FSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 115
Score = 30.4 bits (68), Expect = 2.1
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASGTALHEAALCGKLEVVKTLLEHGADLRII 405
S L+ A + + +V LL AG N+ + LH+AA ++VK LL G D
Sbjct: 32 SALYYAIADNNVRLVCTLLNAGALKNL-LENEFPLHQAATLEDTKIVKILLFSGMDDSQF 90
Query: 406 DSKHNTVL 413
D K NT L
Sbjct: 91 DDKGNTAL 98
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 44.8 bits (106), Expect = 6e-05
Identities = 52/236 (22%), Positives = 101/236 (42%), Gaps = 38/236 (16%)
Query: 194 GANV--QDSSG----YSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGN 247
GA++ ++S G Y L + +N + EI+ ++ N A T ++D G + L + + +
Sbjct: 99 GADINKKNSDGETPLYCLLSNGYIN-NLEILLFMIENGADTTLLDKDGFTMLQVYLQSNH 157
Query: 248 ---VDIVRVLLCHGPSVPNVNLMTKDNE---TALHCAAQYGHTPVVSQLLEHSCDPTI-- 299
++I+++LL G V++ T +N+ LHC +Y + + +L+ D
Sbjct: 158 HIDIEIIKLLLEKG-----VDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII 212
Query: 300 --RNSRHETALDLAAQYGRLETVDTLVRTHP-------GLIQAYNARAQSTLFPASPLHL 350
N H+ +E +++L+ + I +Y Q +PL+
Sbjct: 213 NKENKSHKKKF--------MEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYY 264
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRII 405
+ + +R + LLQ G D+NI T G T L A + ++L + I
Sbjct: 265 SVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKNTI 320
Score = 42.5 bits (100), Expect = 4e-04
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 24 NGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPL-----HLAAWTGN 78
N N V E + Q+ + + +IV+L + A+ N +D + S+PL ++ +
Sbjct: 29 NPNEIVNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHM 88
Query: 79 VDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHT---PVVSQLLEHSCDPTIRNSRH 135
+DIV++L+ +G ++N D ET L+C G+ ++ ++E+ D T+ +
Sbjct: 89 LDIVKILIENG---ADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDG 145
Query: 136 ETALDLAAQYG 146
T L + Q
Sbjct: 146 FTMLQVYLQSN 156
Score = 39.8 bits (93), Expect = 0.002
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 216 EIVELLLTNEASTNIVDTKGSSPL-----HLAAWTGNVDIVRVLLCHGPSVPNVNLMTKD 270
+IV+L + A+ N +D + S+PL ++ + +DIV++L+ +G ++N D
Sbjct: 52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENG---ADINKKNSD 108
Query: 271 NETALHCAAQYGHT---PVVSQLLEHSCDPTIRNSRHETALDLAAQYG 315
ET L+C G+ ++ ++E+ D T+ + T L + Q
Sbjct: 109 GETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSN 156
Score = 34.4 bits (79), Expect = 0.11
Identities = 49/241 (20%), Positives = 98/241 (40%), Gaps = 23/241 (9%)
Query: 216 EIVELLLTNEASTNIVDTKGSSPLHLA---AWTGNVDIVRVLLCHGPSVPNVNLMTKDNE 272
+IV++L+ N A N ++ G +PL+ + N++I+ ++ +G + L+ KD
Sbjct: 90 DIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENG---ADTTLLDKDGF 146
Query: 273 TALHCAAQYGHT---PVVSQLLEHSCD-PTIRNSRHETALD--LAAQYGRLET-VDTLVR 325
T L Q H ++ LLE D T N L R++ + L
Sbjct: 147 TMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFV 206
Query: 326 THPGLIQAYNARAQSTLFP-ASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEA 383
+ +I N + + L ++ ++++ + + +D+N G L+ +
Sbjct: 207 DNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIF-SYIDINQVDELGFNPLYYS 265
Query: 384 ALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQFPPHAVHDISTIINP-----VMSYE 438
++ + LL+ G D+ II NT L F + ++I+N +SY
Sbjct: 266 VSHNNRKIFEYLLQLGGDINIITELGNTC--LFTAFENESKFIFNSILNKKPNKNTISYT 323
Query: 439 F 439
+
Sbjct: 324 Y 324
Score = 32.9 bits (75), Expect = 0.37
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGN---VDIVRVLLCHGPSVPNVNLMTKDNE 103
EI+ ++ N A T ++D G + L + + + ++I+++LL G V++ T +N+
Sbjct: 126 EILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG-----VDINTHNNK 180
Query: 104 ---TALHCAAQY 112
LHC +Y
Sbjct: 181 EKYDTLHCYFKY 192
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 37.2 bits (87), Expect = 4e-04
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEASTNI 230
G + LH AA NG+ E+V+LLL A N
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 36.4 bits (85), Expect = 8e-04
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSV 92
G +PLHLAA GN+++V++LL G +
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADI 28
Score = 36.4 bits (85), Expect = 8e-04
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 234 KGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
G +PLHLAA GN+++V++LL G +
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADI 28
Score = 35.3 bits (82), Expect = 0.002
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 378 TALHEAALCGKLEVVKTLLEHGADL 402
T LH AA G LEVVK LL+ GAD+
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADI 28
Score = 33.7 bits (78), Expect = 0.007
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNI 372
+PLHLA+ NG+ VV LL G D+N
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 32.9 bits (76), Expect = 0.014
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 101 DNETALHCAAQYGHTPVVSQLLEHSCDPTI 130
D T LH AA+ G+ VV LL+ D
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 32.9 bits (76), Expect = 0.014
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 270 DNETALHCAAQYGHTPVVSQLLEHSCDPTI 299
D T LH AA+ G+ VV LL+ D
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 37.2 bits (87), Expect = 5e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEASTNI 230
G + LH AA NG+ E+V+LLL + A N
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 36.1 bits (84), Expect = 0.001
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 378 TALHEAALCGKLEVVKTLLEHGADLRI 404
T LH AA G LE+VK LLEHGAD+
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADINA 30
Score = 35.3 bits (82), Expect = 0.002
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 101 DNETALHCAAQYGHTPVVSQLLEHSCDPTI 130
D T LH AA+ G+ +V LLEH D
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 35.3 bits (82), Expect = 0.002
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 270 DNETALHCAAQYGHTPVVSQLLEHSCDPTI 299
D T LH AA+ G+ +V LLEH D
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 33.8 bits (78), Expect = 0.007
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSV 92
G++PLHLAA GN+++V++LL HG +
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADI 28
Score = 33.8 bits (78), Expect = 0.007
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 234 KGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
G++PLHLAA GN+++V++LL HG +
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADI 28
Score = 33.4 bits (77), Expect = 0.009
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNI 372
+PLHLA+RNG+ +V LL+ G D+N
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADINA 30
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 40.3 bits (94), Expect = 0.002
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 235 GSSPLHLAAWTGNVDI---VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH--TPVVSQ 289
G LH A+ GN+ + + LC+ + NVNL T LH G+ V+ +
Sbjct: 177 GYGILH--AYLGNMYVDIDILEWLCN--NGVNVNLQNNHLITPLHTYLITGNVCASVIKK 232
Query: 290 LLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH 349
++E D + + + Y + + +P + Y P+
Sbjct: 233 IIELGGD---MDMKCVNGMSPIMTY-----IINIDNINPEITNIYIESLDGNKVKNIPMI 284
Query: 350 LAS-----RNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKL--EVVKTLLEHGAD 401
L S RN SVV LQ G+ ++ + ++G T LH+ L + +++K L E+G D
Sbjct: 285 LHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND 344
Query: 402 LRIIDSKHNTVL 413
L D+ NTVL
Sbjct: 345 LNEPDNIGNTVL 356
Score = 33.0 bits (75), Expect = 0.34
Identities = 56/247 (22%), Positives = 93/247 (37%), Gaps = 44/247 (17%)
Query: 66 GSSPLHLAAWTGNVDI---VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH--TPVVSQ 120
G LH A+ GN+ + + LC+ + NVNL T LH G+ V+ +
Sbjct: 177 GYGILH--AYLGNMYVDIDILEWLCN--NGVNVNLQNNHLITPLHTYLITGNVCASVIKK 232
Query: 121 LLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH 180
++E D + + + Y + + +P + Y P+
Sbjct: 233 IIELGGD---MDMKCVNGMSPIMTY-----IINIDNINPEITNIYIESLDGNKVKNIPMI 284
Query: 181 LAS-----RN------GHSLRRGPGANVQDSSGYSALHHAAL--NGHKEIVELLLTNEAS 227
L S RN L+ G + +DS+G + LH L N +I++LL
Sbjct: 285 LHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND 344
Query: 228 TNIVDTKGSSPLH-----------LAAWTGN---VDIVRVLLCHGPSVPNVNLMTKDNET 273
N D G++ LH L T N +D+++ L+ G + VN + T
Sbjct: 345 LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT 404
Query: 274 ALHCAAQ 280
+ C AQ
Sbjct: 405 SYICTAQ 411
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 39.7 bits (92), Expect = 0.002
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 197 VQDSSGYSALH-HAALNGHKE-IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVL 254
++ S Y LH + + G E VE LL S N D G+ PLH+A+ N IV +L
Sbjct: 32 IEPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAML 91
Query: 255 LCHGPSVPNVNLMTKDNETALH 276
L HG + N K ++T L+
Sbjct: 92 LTHG---ADPNACDKQHKTPLY 110
Score = 36.6 bits (84), Expect = 0.023
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 44 LAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNE 103
L VE LL S N D G+ PLH+A+ N IV +LL HG + N K ++
Sbjct: 50 LDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHG---ADPNACDKQHK 106
Query: 104 TALH 107
T L+
Sbjct: 107 TPLY 110
Score = 36.2 bits (83), Expect = 0.031
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L RG N D G LH A+ + IV +LLT+ A N D + +PL+ + T +
Sbjct: 59 LHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDE 118
Query: 249 DIVRV--LLCHGPSVPN 263
I R+ L+ +G + N
Sbjct: 119 VIERINLLVQYGAKINN 135
Score = 33.5 bits (76), Expect = 0.26
Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 21/191 (10%)
Query: 96 NLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
N D LH A++ + +V+ LL H DP + +H+T L L D V
Sbjct: 66 NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYY------LSGTDDEV 119
Query: 156 RTHPGLIQAYNARAQSTLFP--ASPLHLASRNGHSLRR-----GPGANVQDSSGYSALHH 208
L+ Y A+ +++ PL + + + G A + D G + +H
Sbjct: 120 IERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHR 179
Query: 209 AAL--NGHKEIVELLLTNEASTNIVDTKGSSPLHL--AAWTGNVDIVRVLLCHGPSVPNV 264
+ N + ++ S + D G++PLH+ + NVDI+ +LL PS +V
Sbjct: 180 HLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL---PST-DV 235
Query: 265 NLMTKDNETAL 275
N K ++ L
Sbjct: 236 NKQNKFGDSPL 246
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 38.6 bits (90), Expect = 0.003
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 194 GANVQ---DSSGYSALHHAAL---NGHKEIVELLLTNEASTNIVDTKGSSPLH--LAAWT 245
GA+V + SALHH N EI+++L+ + +S D G + LH + +
Sbjct: 76 GADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFN 135
Query: 246 GNVDIVRVLLCHGPSVPNVNLMTKDNETALH 276
++++++L+ G S N + DN L+
Sbjct: 136 VRINVIKLLIDSGVSFLNKD---FDNNNILY 163
Score = 34.8 bits (80), Expect = 0.052
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLH--LAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNET 104
EI+++L+ + +S D G + LH + + ++++++L+ G S N + DN
Sbjct: 104 EILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKD---FDNNN 160
Query: 105 ALH 107
L+
Sbjct: 161 ILY 163
Score = 30.9 bits (70), Expect = 1.0
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 212 NGHKEIVELLLTNEASTN-IVDTKGSSPLH-LAAWTGNV--DIVRVLLCHGPSVPNVNLM 267
+ EI++ L+ N A N S LH ++ NV +I+++L+ G S+ +
Sbjct: 63 KVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEED-- 120
Query: 268 TKDNETALH 276
+D + LH
Sbjct: 121 -EDGKNLLH 128
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 40.0 bits (93), Expect = 0.003
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 90 PSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR-L 148
P + ++N++ K ET LH A +Y +VS LLE D IR++ T + +A R +
Sbjct: 440 PYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNI 499
Query: 149 ETVDTLVRTHPGL 161
E + L+ P L
Sbjct: 500 ELLKMLLCHKPTL 512
Score = 40.0 bits (93), Expect = 0.003
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 259 PSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR-L 317
P + ++N++ K ET LH A +Y +VS LLE D IR++ T + +A R +
Sbjct: 440 PYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNI 499
Query: 318 ETVDTLVRTHPGL 330
E + L+ P L
Sbjct: 500 ELLKMLLCHKPTL 512
Score = 38.1 bits (88), Expect = 0.011
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAA-WTGNVDIVRVL 254
N+ D G + LH A + +V LLL + + NI G + + +A + N++++++L
Sbjct: 446 NMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKML 505
Query: 255 LCHGPSV 261
LCH P++
Sbjct: 506 LCHKPTL 512
Score = 35.7 bits (82), Expect = 0.052
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 348 LHLASRNGHRSVVARLLQAGLDVNIRTASG-----TALHEAALCGKLEVVKTLLEHGADL 402
LH A R +S+V+ LL++G DVNIR+ +G A++E+ +E++K LL H L
Sbjct: 456 LHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESR---NIELLKMLLCHKPTL 512
Query: 403 R-IIDS 407
+IDS
Sbjct: 513 DCVIDS 518
Score = 29.2 bits (65), Expect = 5.9
Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 46 REIVELLLTNEASTNIVDTKGSSPLHLAA-WTGNVDIVRVLLCHGPSV 92
+ +V LLL + + NI G + + +A + N++++++LLCH P++
Sbjct: 465 QSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPTL 512
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 39.3 bits (92), Expect = 0.004
Identities = 56/271 (20%), Positives = 103/271 (38%), Gaps = 70/271 (25%)
Query: 45 AREIVELLLTNEASTNIVDTKGSSPLHLAAWT---GNVDIVRVLLCHGPSVPNVNLMTKD 101
++IV+LLL A N+ G SP+ + N D++R LL G +V +V
Sbjct: 87 IKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGY 146
Query: 102 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 161
N LH Y + V + + + L+ L
Sbjct: 147 N--LLH---MYLESFSV----------------------------KKDVIKILLSFGVNL 173
Query: 162 IQAYNARAQSTLFPASPLHLASRNGHS----------LRRGPGANVQDSSGYSALHHAAL 211
+ + L+ +P+++ RN +++G ++ S L + L
Sbjct: 174 FEKTS------LYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLE-SFL 226
Query: 212 NGHKEIVELLLTNE----------ASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
+ +K +L E N D KG +PL ++A N + LL G +
Sbjct: 227 DNNK----ILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDI 282
Query: 262 PNVNLMTKDNETALHCAAQYGHTPVVSQLLE 292
NV +KD +T L A ++G+ +++++L+
Sbjct: 283 YNV---SKDGDTVLTYAIKHGNIDMLNRILQ 310
Score = 28.2 bits (63), Expect = 9.8
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 16/55 (29%)
Query: 359 VVARLLQAGLDVNIRTASGTALHEAALCGKL-----------EVVKTLLEHGADL 402
+V L+ G DVN + E LC L ++VK LL+ GAD+
Sbjct: 52 IVKLLIDNGADVNYK-----GYIETPLCAVLRNREITSNKIKKIVKLLLKFGADI 101
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 32.7 bits (74), Expect = 0.18
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 196 NVQDSSGYSALHHAALNGHK----EIVELLLTNEASTNIVDT-KGSSPLHLAAWTGNVDI 250
N D +G +H AA EI++ L+ A N + +G + LHLAA + D+
Sbjct: 54 NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDL 113
Query: 251 VRVLLCHGPSVPNVNLMTKDNETALHCA 278
LC P + +++ DN++ A
Sbjct: 114 AE-WLCCQPGI-DLHFCNADNKSPFELA 139
Score = 29.2 bits (65), Expect = 2.9
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 44 LAREIVELLLTNEASTNIVDT-KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDN 102
LA EI++ L+ A N + +G + LHLAA + D+ LC P + +++ DN
Sbjct: 75 LAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAE-WLCCQPGI-DLHFCNADN 132
Query: 103 ETALHCA 109
++ A
Sbjct: 133 KSPFELA 139
>gnl|CDD|197248 cd09150, PLDc_Ymt_1, Putative catalytic domain, repeat 1, of
Yersinia pestis murine toxin-like proteins. Putative
catalytic domain, repeat 1, of Yersinia pestis murine
toxin (Ymt), a plasmid-encoded phospholipase D (PLD, EC
3.1.4.4), and similar proteins. Ymt is important in
order for Yersinia pestis to survive and spread. It is
toxic to mice and rats but not to other animals. It is
not a conventional secreted exotoxin, but a cytoplasmic
protein that is released upon bacterial lysis. Ymt may
be active as a dimer. The monomeric Ymt consists of two
catalytic domains, each of which contains one copy of
the conserved HKD motif (H-x-K-x(4)-D, where x
represents any amino acid residue). Two HKD motifs from
two domains form a single active site. Ymt has PLD-like
activity and has been classified into the PLD
superfamily. It hydrolyzes the terminal phosphodiester
bond in several phospholipids, with preference for
phosphatidylethanolamine (PE) over phosphatidylcholine
(PC) and phosphatidylserine (PS). Like other PLD
enzymes, Ymt may utilize a common two-step ping-pong
catalytic mechanism involving an enzyme-substrate
intermediate to cleave phosphodiester bonds. The two
histidine residues from the two HKD motifs play key
roles in the catalysis. Upon substrate binding, a
histidine residue from one HKD motif could function as
the nucleophile, attacking the phosphodiester bond to
create a covalent phosphohistidine intermediate, while
the other histidine residue from the second HKD motif
could serve as a general acid, stabilizing the leaving
group. In terms of sequence similarity, Ymt is closely
related to Streptomyces PLDs.
Length = 215
Score = 31.3 bits (71), Expect = 0.74
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 409 HNTVLDLLKQFPPHAVHDISTII 431
HN +DL + +PP VHD+S I+
Sbjct: 179 HNLNMDLFRSYPP--VHDVSVIV 199
>gnl|CDD|226712 COG4261, COG4261, Predicted acyltransferase [General function
prediction only].
Length = 309
Score = 31.3 bits (71), Expect = 0.84
Identities = 28/190 (14%), Positives = 49/190 (25%), Gaps = 17/190 (8%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
A G + + A G L L + G+ ++ R L ++
Sbjct: 88 ALWRGELQPFRVRFAGGAEAAADLADGRGKLLLGSHLGSFEVCRALATTHGYKKINAVVY 147
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD-TLVRTH 327
+N + + L+ + ALD + D VR
Sbjct: 148 SENARRFNQILAAMNPEAAINLIPVGDIGPATAILLKEALDAGEMVAIV--GDRIAVREQ 205
Query: 328 PGLIQAYNARAQSTLFPASPLHLAS-------------RNGHRSVVARLLQAGLDVNIRT 374
+ + FP P LA+ ++G + L + R
Sbjct: 206 DWRVCWMSFLGAPAPFPQGPFILAAALKCPVNLIFGLYQHGKYHLHFESFADPLQLP-RG 264
Query: 375 ASGTALHEAA 384
AL A
Sbjct: 265 ERAQALQAAI 274
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 30.6 bits (69), Expect = 0.99
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 183 SRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIV---ELLLTNEASTNIVDTK-GSSP 238
S +GH L R D G H A V ELL+ A N + G++
Sbjct: 44 SGDGHLLHR------YDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTL 97
Query: 239 LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCA 278
LH+AA T N ++ LC V N+ + +ETA H A
Sbjct: 98 LHIAASTKNYELAE-WLCRQLGV-NLGAINYQHETAYHIA 135
>gnl|CDD|172932 PRK14456, PRK14456, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 368
Score = 31.0 bits (70), Expect = 1.2
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 362 RLLQAGLDVNIRTASGTALHEAALCGKL 389
RLL AGL V +R + GT ++ A CG+L
Sbjct: 337 RLLDAGLQVTVRKSYGTTINAA--CGQL 362
>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain. The
C-terminal domain of transketolase has been proposed as
a regulatory molecule binding site.
Length = 124
Score = 29.5 bits (67), Expect = 1.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 361 ARLLQAGLDVNIRTASGTALHEAALCGKLEVVKTLLEHGADLRIID 406
A +L+ G DV I A G+ +HEA LE + L + G +ID
Sbjct: 3 AEILREGDDVTI-VAYGSMVHEA-----LEAAEELAKEGISAEVID 42
>gnl|CDD|221296 pfam11894, DUF3414, Protein of unknown function (DUF3414). This
family of proteins are functionally uncharacterized. This
protein is found in eukaryotes. Proteins in this family
are typically between 764 to 2011 amino acids in length.
This protein has a conserved LLG sequence motif.
Length = 1612
Score = 30.8 bits (70), Expect = 1.8
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 348 LHLASRNGHRSVVARLLQAGLD-VNIRTASGTALHEAALCGKLEVVKTLLEHGADLRIID 406
LH S+NG S R+L A L + TA G + L+ + + ++
Sbjct: 1096 LHSTSKNGQPSRKERILSALLGGSSTYTADGEPGDNPTIFSLLDFLDFEFKEELPPPQLE 1155
Query: 407 SKHNTVLDLLKQFPPHA-----VHDIS 428
LDL + P ++D+S
Sbjct: 1156 FFDGLDLDLCLENEPDNDYGVRLYDLS 1182
>gnl|CDD|193531 cd05654, M20_ArgE_RocB, M20 Peptidase Arginine utilization protein,
RocB. Peptidase M20 family, ArgE RocB (Arginine
utilization protein, RocB; arginine degradation protein,
RocB) subfamily. This group of proteins is possibly
related to acetylornithine deacetylase (ArgE) and may be
involved in the arginine and/or ornithine degradation
pathway. In Bacillus subtilis, RocB is one of the three
genes found in the rocABC operon, which is sigma L
dependent and induced by arginine. The function of
members of this family is as yet unknown, although they
are predicted as deacetylases.
Length = 535
Score = 30.6 bits (70), Expect = 2.1
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 16 QDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAW 75
++L E A+ + EK L + K+ L ++L EA+ IV+ L A
Sbjct: 349 EELYEEAKKKGGEKFEKFLEELEKK---LLDGELDLR---EATIRIVEA-------LLAL 395
Query: 76 TGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQY 112
+ VL P P+VNL ++++ L +
Sbjct: 396 CKDKAPAVVLFFAPPYYPHVNLSGEEDDQKLLEVLEE 432
>gnl|CDD|227024 COG4679, COG4679, Phage-related protein [Function unknown].
Length = 116
Score = 28.5 bits (64), Expect = 2.9
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 368 LDVNIRTASGTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNT 411
L V++R G AL + G+ K + G ++ + +
Sbjct: 23 LPVSVRAEFGYALDKIQAGGEPLDWKPVSTIGPGVKELRIRDAR 66
>gnl|CDD|129319 TIGR00215, lpxB, lipid-A-disaccharide synthase. Lipid-A precursor
biosynthesis producing lipid A disaccharide in a
condensation reaction. transcribed as part of an operon
including lpxA [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 385
Score = 29.9 bits (67), Expect = 3.2
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 306 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
A L Q L V +V +Q +A+ P LHL + +++ A
Sbjct: 215 AAQLLEQQEPDLRRVLPVVNFKRR-LQFEQIKAEYG--PDLQLHLIDGDARKAMFAA--- 268
Query: 366 AGLDVNIRTASGTALHEAALCGKLEVV 392
D + ASGTA EAAL VV
Sbjct: 269 ---DAAL-LASGTAALEAALIKTPMVV 291
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 29.6 bits (66), Expect = 3.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 369 DVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
D+N A G T L+ A G +++V LLE+GA++ + S T LD+
Sbjct: 213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDV 260
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 29.6 bits (66), Expect = 3.6
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 363 LLQAGLDVNIRT--ASGTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
L++ G DVN A T L+ + L G L+ ++ LL +GAD+ I + T ++L
Sbjct: 89 LIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIEL 143
>gnl|CDD|234713 PRK00283, xerD, site-specific tyrosine recombinase XerD; Reviewed.
Length = 299
Score = 29.4 bits (67), Expect = 3.8
Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 27/89 (30%)
Query: 331 IQAYNARAQSTLFPASPLH---LASRNGH--RSVVARLLQ-AGLDVNIRTASGT------ 378
I+ Y R + L ++R G R ++ I +
Sbjct: 190 IERYLERGRPALLNGRSSDALFPSARGGQLTRQTFWHRIKHYAKRAGIDPKKLSPHVLRH 249
Query: 379 --ALHEAALCGKLEVVKTLLEHGADLRII 405
A H LL HGADLR++
Sbjct: 250 AFATH-------------LLNHGADLRVV 265
>gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of
metallo-dependent hydrolases (also called amidohydrolase
superfamily) is a large group of proteins that show
conservation in their 3-dimensional fold (TIM barrel)
and in details of their active site. The vast majority
of the members have a conserved metal binding site,
involving four histidines and one aspartic acid residue.
In the common reaction mechanism, the metal ion (or
ions) deprotonate a water molecule for a nucleophilic
attack on the substrate. The family includes urease
alpha, adenosine deaminase, phosphotriesterase
dihydroorotases, allantoinases, hydantoinases, AMP-,
adenine and cytosine deaminases, imidazolonepropionase,
aryldialkylphosphatase, chlorohydrolases,
formylmethanofuran dehydrogenases and others.
Length = 275
Score = 29.2 bits (65), Expect = 4.7
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 293 HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQS-TLFPASPLHLA 351
H+ + E + L GR+ + + P L++ S + P S L
Sbjct: 152 HAGELPDPTRALEDLVALLRLGGRV-VIGHVSHLDPELLELLKEAGVSLEVCPLSNYLLG 210
Query: 352 SRNGHRSVVARLLQAGLDVNI 372
+ RLL+ G+ V +
Sbjct: 211 RDGEGAEALRRLLELGIRVTL 231
>gnl|CDD|216830 pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes,
this domain is involved in mitochondrial biogenesis. Its
function in prokaryotes in unknown.
Length = 206
Score = 28.7 bits (65), Expect = 5.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVD 249
L+ + IVE+ L +VDT HL AWTG ++
Sbjct: 136 VFLSSYGAIVEIELAPGEPL-VVDTG-----HLVAWTGGLN 170
>gnl|CDD|223814 COG0743, Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase
[Lipid metabolism].
Length = 385
Score = 29.1 bits (66), Expect = 5.7
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 386 CGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQFPPHAVHDI 427
G+L V+ E GA L +DS+HN + L+ V I
Sbjct: 127 AGEL-VMDAAKESGAQLLPVDSEHNAIFQCLQGETQKGVKKI 167
>gnl|CDD|223035 PHA03294, PHA03294, envelope glycoprotein H; Provisional.
Length = 835
Score = 29.3 bits (66), Expect = 5.8
Identities = 35/145 (24%), Positives = 42/145 (28%), Gaps = 32/145 (22%)
Query: 300 RNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSV 359
L LAA +D L +N A+ LF A L G
Sbjct: 470 DPKASAAVLPLAA-----RLIDALYAEFLRDRILWNPTARHALFFAVASLLQPAAGAPEW 524
Query: 360 VAR------LLQAGLDVNIRTASGTALHEAALCGKLEVVKTLLEHG-------------- 399
A LL A TA TA H AA L+ L+
Sbjct: 525 EALERARRALLLA-------TAMCTAEHAAAAALDLQEALARLDARGTPFSLLDVFSPCM 577
Query: 400 ADLRIIDSKHNTVLDLLKQFPPHAV 424
A LR ++ VLDLL P
Sbjct: 578 ASLRFDLAEEAHVLDLLSAVPRRPA 602
>gnl|CDD|217912 pfam04124, Dor1, Dor1-like family. Dor1 is involved in vesicle
targeting to the yeast Golgi apparatus and complexes
with a number of other trafficking proteins, which
include Sec34 and Sec35.
Length = 339
Score = 28.2 bits (63), Expect = 9.5
Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 127 DPTIRNSRHETALDLAAQYGRLET------VDTLVRTHPGLIQAYNARAQSTLFPASPLH 180
D IRN + AL+LAA RL V + Q SPL
Sbjct: 114 DTCIRNGYYSEALELAAYASRLRQRYSTNPVIQSIAAQVEETVQELL-EQLIQQLRSPLQ 172
Query: 181 LAS--RNGHSLRRGP 193
L R LRR P
Sbjct: 173 LPECLRVVGYLRRMP 187
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.379
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,686,554
Number of extensions: 2183156
Number of successful extensions: 2657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2405
Number of HSP's successfully gapped: 199
Length of query: 459
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 359
Effective length of database: 6,502,202
Effective search space: 2334290518
Effective search space used: 2334290518
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)