RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2184
(459 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 292 bits (751), Expect = 4e-95
Identities = 121/420 (28%), Positives = 175/420 (41%), Gaps = 65/420 (15%)
Query: 18 LLEAARNGNIQVVEKILSQRAK-----RSG--PL-------AREIVELLLTNEASTNIVD 63
L AAR G+ +V + +L +AK + PL +V+LLL N A+ N+
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110
Query: 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 123
T G +PLH+AA G+V+ V LL + MTK T LH AA+YG V LLE
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEKEA---SQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Query: 124 HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS 183
P T L +A + L+ V L
Sbjct: 168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL----------------------------- 198
Query: 184 RNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAA 243
L RG + +GY+ LH AA E+ LL S N +G +PLHLAA
Sbjct: 199 -----LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 253
Query: 244 WTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR 303
G+ ++V +LL N NL K T LH AQ GH PV L++H
Sbjct: 254 QEGHAEMVALLLSKQA---NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 310
Query: 304 HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARL 363
T L +A+ YG ++ V L++ + NA+ T SPLH A++ GH +V L
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADV----NAK---TKLGYSPLHQAAQQGHTDIVTLL 363
Query: 364 LQAGLDVNIRTASG-TALHEAALCGKLEVVKTL---LEHGADLRIIDSKHNTVLDLLKQF 419
L+ G N ++ G T L A G + V L + + + + D + + + +
Sbjct: 364 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEI 423
Score = 290 bits (744), Expect = 5e-94
Identities = 117/397 (29%), Positives = 176/397 (44%), Gaps = 67/397 (16%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
L A+ G++ IV+ LL AS N+ + K +PLH+AA G
Sbjct: 18 LHVASFMGHL-------------------PIVKNLLQRGASPNVSNVKVETPLHMAARAG 58
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET 137
+ ++ + LL + VN KD++T LHCAA+ GHT +V LLE++ +P + + T
Sbjct: 59 HTEVAKYLLQNK---AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHT 115
Query: 138 ALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV 197
L +AA+ G +ETV L L +
Sbjct: 116 PLHIAAREGHVETVLAL----------------------------------LEKEASQAC 141
Query: 198 QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257
G++ LH AA G + ELLL +A N G +PLH+A N+DIV++LL
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 258 GPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRL 317
G + + + T LH AA+ V LL++ + + T L LAAQ G
Sbjct: 202 G---GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258
Query: 318 ETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
E V L+ N +S L +PLHL ++ GH V L++ G+ V+ T G
Sbjct: 259 EMVALLLSKQANG----NLGNKSGL---TPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 311
Query: 378 -TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
T LH A+ G +++VK LL+H AD+ + L
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL 348
Score = 277 bits (712), Expect = 3e-89
Identities = 102/358 (28%), Positives = 152/358 (42%), Gaps = 48/358 (13%)
Query: 57 ASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTP 116
S G +PLH+A++ G++ IV+ LL G + N+ ET LH AA+ GHT
Sbjct: 5 ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRG---ASPNVSNVKVETPLHMAARAGHTE 61
Query: 117 VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA 176
V LL++ + +T L AA+ G V L
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL---------------------- 99
Query: 177 SPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGS 236
L N+ ++G++ LH AA GH E V LL EAS + KG
Sbjct: 100 ------------LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF 147
Query: 237 SPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 296
+PLH+AA G V + +LL + N K+ T LH A + + +V LL
Sbjct: 148 TPLHVAAKYGKVRVAELLLERD---AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Query: 297 PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 356
P T L +AA+ ++E +L++ + G A + + +PLHLA++ GH
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGV------TPLHLAAQEGH 257
Query: 357 RSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
+VA LL + N+ SG T LH A G + V L++HG + T L
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL 315
Score = 263 bits (674), Expect = 1e-83
Identities = 110/401 (27%), Positives = 164/401 (40%), Gaps = 72/401 (17%)
Query: 18 LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTNEASTNIVD 63
L AAR G+ +V+ +L A +G PL AR E V LL EAS +
Sbjct: 84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143
Query: 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 123
KG +PLH+AA G V + +LL + N K+ T LH A + + +V LL
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDA---HPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200
Query: 124 HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS 183
P T L +AA+ ++E +L
Sbjct: 201 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSL----------------------------- 231
Query: 184 RNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAA 243
L+ G AN + G + LH AA GH E+V LLL+ +A+ N+ + G +PLHL A
Sbjct: 232 -----LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVA 286
Query: 244 WTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR 303
G+V + VL+ HG V+ T+ T LH A+ YG+ +V LL+H D +
Sbjct: 287 QEGHVPVADVLIKHGV---MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343
Query: 304 HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARL 363
+ L AAQ G + V L++ + ++ + PL +A R G+ SV L
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTT------PLAIAKRLGYISVTDVL 396
Query: 364 LQA---GLDVNIRTASGTALHEAALCGKLEVVKTLLEHGAD 401
V + + E V +L+ D
Sbjct: 397 KVVTDETSFVLVSDKHRMSF--------PETVDEILDVSED 429
Score = 209 bits (535), Expect = 4e-63
Identities = 90/300 (30%), Positives = 134/300 (44%), Gaps = 39/300 (13%)
Query: 18 LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTNEASTNIVD 63
L AA+ G ++V E +L + A ++G PL +IV+LLL S +
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209
Query: 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 123
G +PLH+AA V++ R LL +G + N + T LH AAQ GH +V+ LL
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGG---SANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Query: 124 HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS 183
+ + N T L L AQ G + D L++ + +A + +PLH+AS
Sbjct: 267 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV----DATTRMGY---TPLHVAS 319
Query: 184 RNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSS 237
G+ L+ N + GYS LH AA GH +IV LLL N AS N V + G++
Sbjct: 320 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT 379
Query: 238 PLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDP 297
PL +A G + + VL V + K + V ++L+ S D
Sbjct: 380 PLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDVSEDE 430
Score = 205 bits (525), Expect = 1e-61
Identities = 78/293 (26%), Positives = 115/293 (39%), Gaps = 45/293 (15%)
Query: 124 HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS 183
T L +A+ G L V L
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNL----------------------------- 33
Query: 184 RNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAA 243
L+RG NV + + LH AA GH E+ + LL N+A N +PLH AA
Sbjct: 34 -----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAA 88
Query: 244 WTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR 303
G+ ++V++LL + N NL T T LH AA+ GH V LLE +
Sbjct: 89 RIGHTNMVKLLLENN---ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK 145
Query: 304 HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARL 363
T L +AA+YG++ + L+ A +PLH+A + + +V L
Sbjct: 146 GFTPLHVAAKYGKVRVAELLL-ERDAHPNAAGKNGL------TPLHVAVHHNNLDIVKLL 198
Query: 364 LQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
L G + +G T LH AA ++EV ++LL++G + T L L
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 251
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 279 bits (715), Expect = 8e-91
Identities = 62/368 (16%), Positives = 121/368 (32%), Gaps = 31/368 (8%)
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
D + +H+AA G D VR L+ G + + + TALH A ++G
Sbjct: 14 IKSDDENMEKIHVAARKGQTDEVRRLIETGV---SPTIQNRFGCTALHLACKFGCVDTAK 70
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPL 179
L ++ + + + LA + + V LV P
Sbjct: 71 YLASVGEVHSLWHGQ--KPIHLAVMANKTDLVVALV--------EGAKERGQM-----PE 115
Query: 180 HLASRNGHSLRRGPGANVQDSSGYSALHHAALNG--HKEIVELLLTNEASTNIVDTKGSS 237
L + G++V+ G +ALH G + E++++L+ AS D +
Sbjct: 116 SLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADET 175
Query: 238 PLHLAAWTGNVDIVRVLLCHGPSVP--NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC 295
PL A N + + +++ PS ++ K + LH A V + +E
Sbjct: 176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI 235
Query: 296 DPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQS-------TLFPASPL 348
D + ++ H L L+ + + L+ + + + +
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELL-QKTDVFLIQACPYHNGTTVLPDRVVWLDFV 294
Query: 349 HLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDS 407
A+ + V+ L + +V +G + V + L A +R
Sbjct: 295 PAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSR 354
Query: 408 KHNTVLDL 415
+
Sbjct: 355 SRARSSAV 362
Score = 216 bits (552), Expect = 2e-66
Identities = 62/331 (18%), Positives = 111/331 (33%), Gaps = 62/331 (18%)
Query: 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDT 153
N +N +H AA+ G T V +L+E PTI+N TAL LA ++G ++T
Sbjct: 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY 71
Query: 154 LVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNG 213
L G G +H A +
Sbjct: 72 LASV------------------------------------GEVHSLWHGQKPIHLAVMAN 95
Query: 214 HKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNET 273
++V L+ +G P L ++ + ++ +T
Sbjct: 96 KTDLVVALVEGAKE------RGQMPESLLNECDEREVNEI---------GSHVKHCKGQT 140
Query: 274 ALHCAAQYG--HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLI 331
ALH G + ++ L++ PT ++ ET L A ++ E +D ++ T P
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS 200
Query: 332 QAY-NARAQS--TLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCG 387
+ + + LH A V R ++ G+DVN+ L+ +
Sbjct: 201 SLRLDYANKQGNS-----HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA 255
Query: 388 KLEVVKTLLEHGADLRIIDSKHNTVLDLLKQ 418
+ + K LL+ I ++ +L
Sbjct: 256 MVLLTKELLQKTDVFLIQACPYHNGTTVLPD 286
Score = 201 bits (514), Expect = 8e-61
Identities = 45/338 (13%), Positives = 97/338 (28%), Gaps = 63/338 (18%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK---RSG--PL---AR----EIVELLLTNEA 57
+++ L A + G + + + S G P+ ++V L+
Sbjct: 49 QNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAK 108
Query: 58 STNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYG--HT 115
+G P L ++ + ++ +TALH G +
Sbjct: 109 E------RGQMPESLLNECDEREVNEI---------GSHVKHCKGQTALHWCVGLGPEYL 153
Query: 116 PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY-NARAQS--T 172
++ L++ PT ++ ET L A ++ E +D ++ T P + + +
Sbjct: 154 EMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS 213
Query: 173 LFPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
LH A + G N++D+ L+ + + + LL
Sbjct: 214 -----HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268
Query: 227 STNIVDTK-------------GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNET 273
I + AA +++++L V
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD---EVVRSLNTGAG 325
Query: 274 ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 311
+ V L S R+ + ++
Sbjct: 326 GAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 233 bits (598), Expect = 2e-73
Identities = 99/361 (27%), Positives = 143/361 (39%), Gaps = 61/361 (16%)
Query: 18 LLEAARNGNI-QVVEKILSQRAK-----RSG--PL-------AREIVELLLTNEASTNIV 62
LLEAAR+GN +++ + PL IV+LLL + A +
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
D G PLH A G+ ++ +LL HG VN M T LH AA V S LL
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGA---CVNAMDLWQFTPLHEAASKNRVEVCSLLL 144
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 182
H DPT+ N ++A+D+A E + + H S L A
Sbjct: 145 SHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH------------------SLLQAA 186
Query: 183 SRNGHS-----LRRGPGANVQDSSGYSALHHAALNGH---KEIVELLLTNEASTNIVDTK 234
+ L Q S +ALH A + H K++ ELLL A+ N +
Sbjct: 187 READLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD 246
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
+PLH+AA + D++ VL HG +N + +TALH AA GH LL +
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGA---KMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Query: 295 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 354
DP+I + + TA + E V ++ + + L AS+
Sbjct: 304 SDPSIISLQGFTAAQMGN-----EAVQQIL-SESTPM---RTSDVDY-----RLLEASKA 349
Query: 355 G 355
G
Sbjct: 350 G 350
Score = 227 bits (582), Expect = 5e-71
Identities = 85/376 (22%), Positives = 131/376 (34%), Gaps = 68/376 (18%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVD-IVRVLLCHGPSVPNVNLMTKDNETA 105
+ L A + L AA +GN + ++ +L N + T
Sbjct: 5 KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV---NCHASDGRKSTP 61
Query: 106 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY 165
LH AA Y +V LL+H D ++ L A YG E + L+ H
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLL-KH------- 113
Query: 166 NARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLT 223
GA V D ++ LH AA E+ LLL+
Sbjct: 114 ----------------------------GACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145
Query: 224 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 283
+ A +V+ G S + +A + + + L AA+
Sbjct: 146 HGADPTLVNCHGKSAVDMAPTPELRERLTYEF--------------KGHSLLQ-AAREAD 190
Query: 284 TPVVSQLLEHSCDPTIRNSRHETALDLAAQYG---RLETVDTLVRTHPGLIQAYNARAQS 340
V + L + HETAL A R + + L+R + N
Sbjct: 191 LAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFM- 248
Query: 341 TLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHG 399
+PLH+A+ H V+ L + G +N + G TALH AAL G L+ + LL +G
Sbjct: 249 -----TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Query: 400 ADLRIIDSKHNTVLDL 415
+D II + T +
Sbjct: 304 SDPSIISLQGFTAAQM 319
Score = 127 bits (323), Expect = 2e-33
Identities = 48/245 (19%), Positives = 72/245 (29%), Gaps = 57/245 (23%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQR----AKRSGPLAREIVELLLTNEASTNIVDTK 65
+ + A + + A R L V+ L E
Sbjct: 153 VNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADL--AKVKKTLALEIINFKQPQS 210
Query: 66 GSSPLHLAAWTG---NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
+ LH A + + +LL G NVN KD T LH AA+ H V+ L
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGA---NVNEKNKDFMTPLHVAAERAHNDVMEVLH 267
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 182
+H +S +TAL AA G L+T L
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLL---------------------------- 299
Query: 183 SRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLA 242
L G ++ G++A E V+ +L+ D L A
Sbjct: 300 ------LSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDY--RLLEA 346
Query: 243 AWTGN 247
+ G+
Sbjct: 347 SKAGD 351
Score = 122 bits (309), Expect = 2e-31
Identities = 47/204 (23%), Positives = 68/204 (33%), Gaps = 45/204 (22%)
Query: 214 HKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVD-IVRVLLCHGPSVPNVNLMTKDNE 272
+ L A + L AA +GN + ++ +L N +
Sbjct: 3 FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV---NCHASDGRKS 59
Query: 273 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 332
T LH AA Y +V LL+H D ++
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLV-------------------------- 93
Query: 333 AYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEV 391
PLH A GH V LL+ G VN T LHEAA ++EV
Sbjct: 94 --------------PLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEV 139
Query: 392 VKTLLEHGADLRIIDSKHNTVLDL 415
LL HGAD +++ + +D+
Sbjct: 140 CSLLLSHGADPTLVNCHGKSAVDM 163
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 228 bits (583), Expect = 4e-72
Identities = 52/280 (18%), Positives = 84/280 (30%), Gaps = 21/280 (7%)
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
V G + LHLA + + LL ++L +TALH AA G V
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV--------RTHPGLIQAYNARAQS 171
+L + TAL LA + L+ +
Sbjct: 63 KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
Query: 172 TLFPASPLHLASRNGHS-------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTN 224
T +P + S+ ++ G++ LH A ++ E+V LL
Sbjct: 123 TSH--APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180
Query: 225 EASTNIVDTK-GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 283
A N + G +PLHLA ++ +LL G + T L A +
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA---DPTARMYGGRTPLGSALLRPN 237
Query: 284 TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
+ L H + + + D
Sbjct: 238 PILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEG 277
Score = 188 bits (479), Expect = 1e-56
Identities = 60/259 (23%), Positives = 81/259 (31%), Gaps = 27/259 (10%)
Query: 178 PLHLASRNGHS------LRRG---PGANVQDSSGYSALHHAALNGHKEIVELLLTNEAST 228
LHLA + H L ++Q+ G +ALH AA+ G VE L A
Sbjct: 12 ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71
Query: 229 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPN----------VNLMTKDNETALHCA 278
+ + G + LHLA VLL PS P + +
Sbjct: 72 LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131
Query: 279 AQYGHTPVVSQLL-EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
+Q + N T L +A + E V L +
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-AGADLNKPEPT 190
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLL 396
T PLHLA SV+ LL+AG D R G T L A L + + L
Sbjct: 191 CGRT-----PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245
Query: 397 EHGADLRIIDSKHNTVLDL 415
HGA +
Sbjct: 246 AHGAPEPEDGGDKLSPCSS 264
Score = 171 bits (437), Expect = 2e-50
Identities = 48/287 (16%), Positives = 72/287 (25%), Gaps = 72/287 (25%)
Query: 21 AARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVD 80
AA G VE L A + + G + LHLA
Sbjct: 52 AAILGEA-------------------STVEKLYAAGAGVLVAERGGHTALHLACRVRAHT 92
Query: 81 IVRVLLCHGPSVPN----------VNLMTKDNETALHCAAQYGHTPVVSQLL-EHSCDPT 129
VLL PS P + + +Q +
Sbjct: 93 CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE 152
Query: 130 IRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSL 189
N T L +A + E V L
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVRLLR---------------------------DA----- 180
Query: 190 RRGPGANV---QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTG 246
GA++ + + G + LH A ++ELLL A G +PL A
Sbjct: 181 ----GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236
Query: 247 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 293
N + R+L HG D + + + + E+
Sbjct: 237 NPILARLLRAHG---APEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280
Score = 126 bits (320), Expect = 1e-33
Identities = 35/242 (14%), Positives = 54/242 (22%), Gaps = 70/242 (28%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAKRS--------------------GPLA---- 45
++ L A R +L R P A
Sbjct: 74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ 133
Query: 46 ----REIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKD 101
E + G +PLH+A + ++VR+L G ++N
Sbjct: 134 PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA---DLNKPEPT 190
Query: 102 N-ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 160
T LH A + V+ LL+ DPT R T L A L
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL------ 244
Query: 161 LIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVEL 220
G S + + + +
Sbjct: 245 ----------------------------RAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDE 276
Query: 221 LL 222
Sbjct: 277 GD 278
Score = 96.5 bits (241), Expect = 1e-22
Identities = 35/184 (19%), Positives = 50/184 (27%), Gaps = 40/184 (21%)
Query: 264 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
+T+D +TALH A + H P + LL S + +++ G+
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND--------LGQ------- 46
Query: 324 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHE 382
+ LHLA+ G S V +L AG V + G TALH
Sbjct: 47 ----------------------TALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL 84
Query: 383 AALCGKLEVVKTLLEHGADLRIIDSKHNTVL--DLLKQFPPHAVHDISTIINPVMSYEFL 440
A LL+ S D S
Sbjct: 85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144
Query: 441 VSGG 444
Sbjct: 145 EDWR 148
Score = 90.3 bits (225), Expect = 1e-20
Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 22/130 (16%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRA------KRSG--PL-------AREIVELLLT 54
++ D L A + + ++V + A G PL A ++ELLL
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 55 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 114
A G +PL A N + R+L HG D + +
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA---PEPEDGGDKLSPCSSSGSDSD 270
Query: 115 TPVVSQLLEH 124
+ + E+
Sbjct: 271 SDNRDEGDEY 280
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 224 bits (574), Expect = 6e-71
Identities = 65/337 (19%), Positives = 108/337 (32%), Gaps = 87/337 (25%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
SP+H AA G+ +R L+ G VN++T D+ + LH A GH V LL+H
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGW---AVNIITADHVSPLHEACLGGHLSCVKILLKHG 59
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
+ T L A G + V+ L++ H
Sbjct: 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQ-H--------------------------- 91
Query: 186 GHSLRRGPGANVQ-DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAW 244
GA+VQ +S S +H AA GH E V L+ + + + +PL+LA
Sbjct: 92 --------GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE 143
Query: 245 TGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 304
V+ LL G +VN K ++ LH A+ + L++ D +N+
Sbjct: 144 NQQRACVKKLLESG---ADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEG 199
Query: 305 ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLL 364
+ P+ L + L
Sbjct: 200 KR----------------------------------------PVELVPPESP--LAQLFL 217
Query: 365 QAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGA 400
+ ++ + ++ K +L
Sbjct: 218 EREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 210 bits (538), Expect = 1e-65
Identities = 57/307 (18%), Positives = 102/307 (33%), Gaps = 63/307 (20%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
+ EAA +G+ + L++ + NI+ SPLH A G
Sbjct: 7 MHEAAIHGHQ-------------------LSLRNLISQGWAVNIITADHVSPLHEACLGG 47
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET 137
++ V++LL HG VN +T D T L A G V+ LL+H + +
Sbjct: 48 HLSCVKILLKHG---AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-AS 103
Query: 138 ALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV 197
+ AA+ G +E V++L + G +
Sbjct: 104 PIHEAARRGHVECVNSL----------------------------------IAYGGNIDH 129
Query: 198 QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257
+ S + L+ A N + V+ LL + A N SPLH A T + ++ +L+
Sbjct: 130 KISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDF 188
Query: 258 GPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRL 317
G + + + + + LE P++
Sbjct: 189 G---ADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPSLMQLCRLRIRKCFGIQQHH 243
Query: 318 ETVDTLV 324
+ ++
Sbjct: 244 KITKLVL 250
Score = 196 bits (502), Expect = 3e-60
Identities = 60/246 (24%), Positives = 96/246 (39%), Gaps = 21/246 (8%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
SP+H A+ +GH + +G N+ + S LH A L GH V++LL + A N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
V +PL A +G+ D V +LL HG +V D + +H AA+ GH V+ L
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHG---ASVQP-ESDLASPIHEAARRGHVECVNSL 120
Query: 291 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHL 350
+ + + + S T L LA + + V L+ A SPLH
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLL--------ESGADVNQGKGQDSPLHA 172
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKH 409
+R + L+ G D + A G + + + LE ++
Sbjct: 173 VARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCR 230
Query: 410 NTVLDL 415
+
Sbjct: 231 LRIRKC 236
Score = 186 bits (476), Expect = 2e-56
Identities = 63/215 (29%), Positives = 106/215 (49%), Gaps = 11/215 (5%)
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
S +S +H AA++GH+ + L++ + NI+ SPLH A G++ V++LL HG
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG-- 59
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 320
VN +T D T L A G V+ LL+H + + + AA+ G +E V
Sbjct: 60 -AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECV 117
Query: 321 DTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASGTAL 380
++L+ + G I + +PL+LA N R+ V +LL++G DVN + L
Sbjct: 118 NSLIA-YGGNIDHKISHLG------TPLYLACENQQRACVKKLLESGADVNQGKGQDSPL 170
Query: 381 HEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
H A E+ L++ GAD + +++ ++L
Sbjct: 171 HAVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 151 bits (385), Expect = 4e-43
Identities = 50/227 (22%), Positives = 83/227 (36%), Gaps = 30/227 (13%)
Query: 18 LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTNEASTNIVD 63
L EA G++ V+ +L A+ PL + V LLL + AS +
Sbjct: 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-E 98
Query: 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 123
+ +SP+H AA G+V+ V L+ +G N++ T L+ A + V +LLE
Sbjct: 99 SDLASPIHEAARRGHVECVNSLIAYGG---NIDHKISHLGTPLYLACENQQRACVKKLLE 155
Query: 124 HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS 183
D ++ L A+ E L+ QA NA + P+ L
Sbjct: 156 SGADVNQGKG-QDSPLHAVARTASEELACLLM-DFGADTQAKNAEGKR------PVELVP 207
Query: 184 RNGHS----LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
L R ++ + H +I +L+L +
Sbjct: 208 PESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 226 bits (578), Expect = 3e-70
Identities = 66/374 (17%), Positives = 111/374 (29%), Gaps = 55/374 (14%)
Query: 55 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 114
+ T L A++ G + N + + G+
Sbjct: 26 KNRKNHQSITSSQHSLLEASYDGYIKR------------QRNELQHYSLYPNPQGYGNGN 73
Query: 115 TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLF 174
+ + PT L A G + + R +I + R
Sbjct: 74 DFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHNR------ 126
Query: 175 PASPLHLASRNGH------------SLRRGPGANV--QDSSGYSALHHAALNGHKEIVEL 220
+ LH + N GA+V D + L A L + +V
Sbjct: 127 --TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184
Query: 221 LLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ 280
L+ A I + S LH AA + ++ +L ++ + ++ TAL A
Sbjct: 185 LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 244
Query: 281 YGHTPVVSQ---LLEH--------SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 329
V+ L+E + + TAL AAQ + V LV G
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV-GEKG 303
Query: 330 L-IQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCG 387
+ + +P+ LA++ G VV L+Q G V A+ TA A
Sbjct: 304 SNKDKQDEDGK------TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN 357
Query: 388 KLEVVKTLLEHGAD 401
+V +
Sbjct: 358 HHNIVDIFDRCRPE 371
Score = 180 bits (459), Expect = 9e-53
Identities = 56/283 (19%), Positives = 102/283 (36%), Gaps = 44/283 (15%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
L A N + + E ++ AK + A N +D ++PL LA
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAK-----------ECIAAGADVNAMDCDENTPLMLAVLAR 177
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC---DPTIRNSR 134
+V L+ G + + K +ALH AA ++ +L + D +
Sbjct: 178 RRRLVAYLMKAG---ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN 234
Query: 135 HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPG 194
TAL + A + V + L++ A +
Sbjct: 235 GMTALMIVAHNEGRDQVASAKL----LVE----------------KGAKVD---YDGAAR 271
Query: 195 ANVQDSSGYSALHHAALNGHKEIVELLLTNE-ASTNIVDTKGSSPLHLAAWTGNVDIVRV 253
+ + G +ALH+AA + IV+ L+ + ++ + D G +P+ LAA G +++V
Sbjct: 272 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 331
Query: 254 LLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 296
L+ G +V + + TA A H +V +
Sbjct: 332 LIQQG---ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 139 bits (353), Expect = 2e-37
Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 29/234 (12%)
Query: 190 RRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVD 249
+ + +S +L A+ +G+ + L + + P GN
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLY---------PNPQGYGNGNDF 75
Query: 250 IVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALD 309
+ + ++ LH A G + + S + T L
Sbjct: 76 LGDFNHTNL---QIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHN-RTVLH 130
Query: 310 LAAQYGRLETVDTLVRTHPGLIQAYNA------RAQSTLFPASPLHLASRNGHRSVVARL 363
A E + L+ A A ++T PL LA R +VA L
Sbjct: 131 WIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT-----PLMLAVLARRRRLVAYL 185
Query: 364 LQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEH---GADLRIIDSKHNTVL 413
++AG D I S +ALH+AA ++ +L D+ +D T L
Sbjct: 186 MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 212 bits (542), Expect = 6e-66
Identities = 80/363 (22%), Positives = 128/363 (35%), Gaps = 100/363 (27%)
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDN-ETALHCAAQYGHTPVVSQL 121
+ + L A +VD+V+ LL G NVN ++ T LH A Q +V L
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGG---ANVNFQEEEGGWTPLHNAVQMSREDIVELL 58
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHL 181
L H DP +R T LAA G ++ + +
Sbjct: 59 LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL-------------------------- 92
Query: 182 ASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVD------- 232
S+ GA+V D G++A AA+ G + ++ L A+ N+
Sbjct: 93 -SK---------GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 142
Query: 233 ---TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTP---- 285
G++ L AA G+V+++++LL + +VN AL A
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGA--DVNACDNMGRNALIHALLSSDDSDVEA 200
Query: 286 VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA 345
+ LL+H D +R + G+
Sbjct: 201 ITHLLLDHGADVNVRG-----------ERGK----------------------------- 220
Query: 346 SPLHLASRNGHRSVVARLL-QAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLR 403
+PL LA H +V RLL Q +++N + G TAL A ++ + L + GA
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
Query: 404 IID 406
D
Sbjct: 281 CGD 283
Score = 204 bits (521), Expect = 8e-63
Identities = 75/314 (23%), Positives = 121/314 (38%), Gaps = 56/314 (17%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTK-GSSPLHLAAWT 76
L++A +N ++ ++V+ LL A+ N + + G +PLH A
Sbjct: 9 LIKAVQNEDV-------------------DLVQQLLEGGANVNFQEEEGGWTPLHNAVQM 49
Query: 77 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136
DIV +LL HG + L K+ T AA G ++ L D +
Sbjct: 50 SREDIVELLLRHGA---DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF 106
Query: 137 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196
TA AA YG+++ + L A+ N +
Sbjct: 107 TAFMEAAVYGKVKALKFLY-----------------------KRGANVNLRR-KTKEDQE 142
Query: 197 VQDSSGYSALHHAALNGHKEIVELLLTNE-ASTNIVDTKGSSPLHLAAWTGNVD----IV 251
G +AL AA GH E++++LL A N D G + L A + + I
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 202
Query: 252 RVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDL 310
+LL HG +VN+ + +T L A + H +V +LLE + +S +TAL L
Sbjct: 203 HLLLDHG---ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259
Query: 311 AAQYGRLETVDTLV 324
A + + + L
Sbjct: 260 AVELKLKKIAELLC 273
Score = 173 bits (440), Expect = 7e-51
Identities = 62/227 (27%), Positives = 89/227 (39%), Gaps = 23/227 (10%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEASTNIVDTK-GSSPLHLAAWTGNVDIVRVLLCHGPS 260
L A N ++V+ LL A+ N + + G +PLH A DIV +LL HG
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG-- 62
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 320
+ L K+ T AA G ++ L D + TA AA YG+++ +
Sbjct: 63 -ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121
Query: 321 DTLV--------RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLL-QAGLDVN 371
L R Q + +T L A+ GH V+ LL + G DVN
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGAT-----ALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 372 IRTASG-TALHEAALCG----KLEVVKTLLEHGADLRIIDSKHNTVL 413
G AL A L + LL+HGAD+ + + T L
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223
Score = 120 bits (304), Expect = 3e-31
Identities = 47/189 (24%), Positives = 69/189 (36%), Gaps = 48/189 (25%)
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDN-ETALHCAAQYGHTPVVSQL 290
+ + L A +VD+V+ LL G NVN ++ T LH A Q +V L
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGA---NVNFQEEEGGWTPLHNAVQMSREDIVELL 58
Query: 291 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHL 350
L H DP +R T P L
Sbjct: 59 LRHGADPVLRKKNGAT----------------------------------------PFLL 78
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKH 409
A+ G ++ L G DVN G TA EAA+ GK++ +K L + GA+ ++ +
Sbjct: 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN---VNLRR 135
Query: 410 NTVLDLLKQ 418
T D +
Sbjct: 136 KTKEDQERL 144
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 210 bits (536), Expect = 5e-65
Identities = 68/275 (24%), Positives = 120/275 (43%), Gaps = 14/275 (5%)
Query: 141 LAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDS 200
+ + + LV + + + + Q + + P G L
Sbjct: 1 MGSSHHHHHHSSGLVP-RGSHMASMDGK-QGGMDGSKPAGPRDFPGIRLLSN-PLMGDAV 57
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
S +S +H AA++GH+ + L++ + NI+ SPLH A G++ V++LL HG
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG-- 115
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 320
VN +T D T L A G V+ LL+H + + + AA+ G +E V
Sbjct: 116 -AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECV 173
Query: 321 DTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASGTAL 380
++L+ + G I + +PL+LA N R+ V +LL++G DVN + L
Sbjct: 174 NSLIA-YGGNIDHKISHLG------TPLYLACENQQRACVKKLLESGADVNQGKGQDSPL 226
Query: 381 HEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
H E+ L++ GAD + +++ ++L
Sbjct: 227 HAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261
Score = 209 bits (534), Expect = 8e-65
Identities = 67/334 (20%), Positives = 108/334 (32%), Gaps = 57/334 (17%)
Query: 72 LAAWTGNVDIVRVLLCHGPSV--PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPT 129
+ + + L+ G + + D G LL +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGD 55
Query: 130 IRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSL 189
+ + + AA +G ++ L +
Sbjct: 56 AVSDW--SPMHEAAIHGHQLSLRNL----------------------------------I 79
Query: 190 RRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVD 249
+G N+ + S LH A L GH V++LL + A N V +PL A +G+ D
Sbjct: 80 SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD 139
Query: 250 IVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALD 309
V +LL HG +V D + +H AA+ GH V+ L+ + + + S T L
Sbjct: 140 CVNLLLQHG---ASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY 195
Query: 310 LAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLD 369
LA + + V L+ A SPLH R + L+ G D
Sbjct: 196 LACENQQRACVKKLLE--------SGADVNQGKGQDSPLHAVVRTASEELACLLMDFGAD 247
Query: 370 VNIRTASG-TALHEAALCGKLEVVKTLLEHGADL 402
+ A G + L + L GA L
Sbjct: 248 TQAKNAEGKRPVELVPPESPLAQLF-LEREGASL 280
Score = 173 bits (442), Expect = 4e-51
Identities = 62/251 (24%), Positives = 99/251 (39%), Gaps = 40/251 (15%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
+ EAA +G+ + L++ + NI+ SPLH A G
Sbjct: 63 MHEAAIHGHQ-------------------LSLRNLISQGWAVNIITADHVSPLHEACLGG 103
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET 137
++ V++LL HG VN +T D T L A G V+ LL+H + +
Sbjct: 104 HLSCVKILLKHGA---QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-AS 159
Query: 138 ALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHS------LRR 191
+ AA+ G +E V++L+ + G I + + PL+LA N L
Sbjct: 160 PIHEAARRGHVECVNSLIA-YGGNIDHKISHLGT------PLYLACENQQRACVKKLLES 212
Query: 192 GPGANV-QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDI 250
G A+V Q S LH +E+ LL+ A T + +G P+ L +
Sbjct: 213 G--ADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ 270
Query: 251 VRVLLCHGPSV 261
+ L G S+
Sbjct: 271 L-FLEREGASL 280
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 209 bits (534), Expect = 2e-64
Identities = 69/292 (23%), Positives = 107/292 (36%), Gaps = 38/292 (13%)
Query: 21 AARNGNIQVVEKILSQRAKRSG-------PLA------REIVELLLTNEASTNIVDTKGS 67
G+ +E + +R K LA E V LL A N + G
Sbjct: 15 KRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGL 74
Query: 68 SPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 127
+ LH A NVD+V+ L+ +G N+N + LH AA G+ + L+
Sbjct: 75 TALHQACIDDNVDMVKFLVENGA---NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH 131
Query: 128 PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 187
NS +T LD+A + E + V I+A R
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA-------------ARKEEERIML 178
Query: 188 S----LRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHL 241
N SG +ALH AA G+ E+++LL+ NI D G +PLH
Sbjct: 179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHA 238
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 293
AA G + R+L+ + ++ + K +TA A + + +
Sbjct: 239 AAHWGKEEACRILVENLC---DMEAVNKVGQTAFDVADEDILGYLEELQKKQ 287
Score = 204 bits (522), Expect = 9e-63
Identities = 69/322 (21%), Positives = 115/322 (35%), Gaps = 52/322 (16%)
Query: 95 VNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
+ + + G + + ++ L A G E V L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLRL 59
Query: 155 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGH 214
L RG N + G +ALH A ++ +
Sbjct: 60 ----------------------------------LERGADINYANVDGLTALHQACIDDN 85
Query: 215 KEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA 274
++V+ L+ N A+ N D +G PLH AA G +DI L+ G +V + + +T
Sbjct: 86 VDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG---AHVGAVNSEGDTP 142
Query: 275 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY 334
L A + ++ + + E A + + L H
Sbjct: 143 LDIAEEEAMEELLQNEVNR------QGVDIEAARKEEERIMLRDARQWLNSGHIND---- 192
Query: 335 NARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVK 393
A+S + LH+A+ G+ V+ L+QA DVNI+ G T LH AA GK E +
Sbjct: 193 VRHAKS---GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR 249
Query: 394 TLLEHGADLRIIDSKHNTVLDL 415
L+E+ D+ ++ T D+
Sbjct: 250 ILVENLCDMEAVNKVGQTAFDV 271
Score = 188 bits (480), Expect = 2e-56
Identities = 61/358 (17%), Positives = 105/358 (29%), Gaps = 92/358 (25%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
+E + T + + A +G+ + V LL G ++N D TAL
Sbjct: 22 TDLEPPVVKRKKTKVKF-DDGAVFLAACSSGDTEEVLRLLERG---ADINYANVDGLTAL 77
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
H A + +V L+E+ + ++ L AA G L+ + L+ +
Sbjct: 78 HQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI-SQ-------- 128
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTN 224
GA+V +S G + L A +E+++ +
Sbjct: 129 ---------------------------GAHVGAVNSEGDTPLDIAEEEAMEELLQNEV-- 159
Query: 225 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHT 284
N + D + L N K TALH AA G+T
Sbjct: 160 ----NRQGVDIEAARKEEERIMLRDARQWLNSGH---INDVRHAKSGGTALHVAAAKGYT 212
Query: 285 PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFP 344
V+ L++ D I++ G
Sbjct: 213 EVLKLLIQARYDVNIKD-----------YDGW---------------------------- 233
Query: 345 ASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGAD 401
+PLH A+ G L++ D+ G TA A + + +
Sbjct: 234 -TPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290
Score = 118 bits (299), Expect = 2e-30
Identities = 49/252 (19%), Positives = 82/252 (32%), Gaps = 50/252 (19%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
+ D L +A + N+ +V+ ++ A G PL A +I E L++
Sbjct: 69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHT 115
A V+++G +PL +A ++++ + N D E A +
Sbjct: 129 GAHVGAVNSEGDTPLDIAEEEAMEELLQNEV---------NRQGVDIEAARKEEERIMLR 179
Query: 116 PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQA---YNARAQS- 171
L + TAL +AA G E + L IQA N +
Sbjct: 180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL-------IQARYDVNIKDYDG 232
Query: 172 -TLFPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTN 224
T PLH A+ G + + G +A A + + EL
Sbjct: 233 WT-----PLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ 287
Query: 225 EASTNIVDTKGS 236
+ K S
Sbjct: 288 NLLHSEKREKKS 299
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 205 bits (525), Expect = 4e-64
Identities = 67/269 (24%), Positives = 111/269 (41%), Gaps = 45/269 (16%)
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
+ SPLH AA G+VDI +L+ G N++ ++D T L AA+ H V
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAG---ANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPL 179
L++ +++ T L LAA+ G E V L+
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN---------------------- 99
Query: 180 HLASRNGHSLRRGPGA---NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGS 236
G N QD G++ + A H ++V+LLL+ + NI D + +
Sbjct: 100 --------------GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEEN 145
Query: 237 SPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 296
LH AA++G VDI +LL +++ + ++ LH AA+ V L D
Sbjct: 146 ICLHWAAFSGCVDIAEILLAAK---CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD 202
Query: 297 PTIRNSRHETALDLAAQYGRLETVDTLVR 325
T++N ET L A+ ++ + + +
Sbjct: 203 VTLKNKEGETPLQCASLNSQVWSALQMSK 231
Score = 196 bits (501), Expect = 2e-60
Identities = 69/312 (22%), Positives = 109/312 (34%), Gaps = 83/312 (26%)
Query: 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDT 153
N + ++ + LH AA+ GH + L++ + + T L AA+ LE V
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 154 LVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAAL 211
L+ GA V +D+ G + LH AA
Sbjct: 63 LI------------------------------KA------GALVDPKDAEGSTCLHLAAK 86
Query: 212 NGHKEIVELLLTNEAST-NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKD 270
GH E+V+ LL+N N D G +P+ A +VD+V++LL G ++N+ +
Sbjct: 87 KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG---SDINIRDNE 143
Query: 271 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 330
LH AA G + LL CD N ++
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS------------------------ 179
Query: 331 IQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKL 389
PLH+A+R V L DV ++ G T L A+L ++
Sbjct: 180 ----------------PLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
Query: 390 EVVKTLLEHGAD 401
+ + D
Sbjct: 224 WSALQMSKALQD 235
Score = 192 bits (491), Expect = 6e-59
Identities = 65/290 (22%), Positives = 109/290 (37%), Gaps = 68/290 (23%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSP 69
+ Q+ L AA G++ +I +L+ A+ + +P
Sbjct: 7 EHQNKRSPLHAAAEAGHV-------------------DICHMLVQAGANIDTCSEDQRTP 47
Query: 70 LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH-SCDP 128
L AA +++ V+ L+ G V+ + T LH AA+ GH VV LL + D
Sbjct: 48 LMEAAENNHLEAVKYLIKAG---ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 129 TIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHS 188
++ T + A +Y ++ V L+
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLL------------------------------SK- 133
Query: 189 LRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTG 246
G+++ +D+ LH AA +G +I E+LL + + V+ G SPLH+AA
Sbjct: 134 -----GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN 188
Query: 247 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 296
D V + L +V L K+ ET L CA+ Q+ + D
Sbjct: 189 RYDCVVLFLSRD---SDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 184 bits (471), Expect = 5e-56
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 12/222 (5%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
++ + S LH AA GH +I +L+ A+ + +PL AA +++ V+ L+
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 256 CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQY 314
G V+ + T LH AA+ GH VV LL + D ++ T + A +Y
Sbjct: 65 KAG---ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 315 GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT 374
++ V L+ + I + LH A+ +G + LL A D++
Sbjct: 122 KHVDLVKLLL-SKGSDINIRDNEEN------ICLHWAAFSGCVDIAEILLAAKCDLHAVN 174
Query: 375 ASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
G + LH AA + + V L +D+ + + + T L
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQC 216
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 204 bits (521), Expect = 2e-63
Identities = 64/270 (23%), Positives = 104/270 (38%), Gaps = 41/270 (15%)
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLL----CHGPSVPNVNLMTKDNETALHCAAQYGHT 115
D G +PLH+A GN+ V L+ G +++ +T LH A
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR---ELDIYNNLRQTPLHLAVITTLP 59
Query: 116 PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFP 175
VV L+ P + +TA LA ++ + L+
Sbjct: 60 SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD------------------- 100
Query: 176 ASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTK- 234
+ ++ G +ALH A +E V+LLL A + VD K
Sbjct: 101 -----------SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS 149
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
G SPL A ++ +V++LL HG NVN +ALH A+ G P+V L+
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHG---ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG 206
Query: 295 CDPTIRNSRHETALDLAAQYGRLETVDTLV 324
D +++N ++T L +A ++ +
Sbjct: 207 ADSSLKNCHNDTPLMVARSRRVIDILRGKA 236
Score = 198 bits (505), Expect = 6e-61
Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 20/236 (8%)
Query: 178 PLHLASRNGH--------SLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEAS 227
PLH+A G+ +L + G + ++ + LH A + +V LL+T AS
Sbjct: 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71
Query: 228 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG-PSVPNVNLMTKDNETALHCAAQYGHTPV 286
+D G + HLA + +R LL P ++ D TALH A
Sbjct: 72 PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 131
Query: 287 VSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA 345
V LLE D + + + L A + L V L+ H + A
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHGANVNAQMYSGS------ 184
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGA 400
S LH AS G +V L+++G D +++ T L A +++++ A
Sbjct: 185 SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 183 bits (467), Expect = 2e-55
Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 18/230 (7%)
Query: 195 ANVQDSSGYSALHHAALNGHKEIVELLL----TNEASTNIVDTKGSSPLHLAAWTGNVDI 250
A D G + LH A + G+ V L+ +I + +PLHLA T +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 251 VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH----SCDPTIRNSRHET 306
VR+L+ G + + + +TA H A ++ + LL+ + D RN T
Sbjct: 62 VRLLVTAG---ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118
Query: 307 ALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQA 366
AL +A ETV L+ I A + ++ + PL A N S+V LLQ
Sbjct: 119 ALHVAVNTECQETVQLLL-ERGADIDAVDIKSGRS-----PLIHAVENNSLSMVQLLLQH 172
Query: 367 GLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
G +VN + SG +ALH A+ G L +V+TL+ GAD + + ++T L +
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222
Score = 173 bits (442), Expect = 9e-52
Identities = 63/271 (23%), Positives = 95/271 (35%), Gaps = 62/271 (22%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK---------RSG--PL---AR----EIVEL 51
D+D L A GN+ V ++++ + PL +V L
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64
Query: 52 LLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG-PSVPNVNLMTKDNETALHCAA 110
L+T AS +D G + HLA + +R LL P ++ D TALH A
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 111 QYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARA 169
V LLE D + + + L A + L V L+
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-------------- 170
Query: 170 QSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEAS 227
H GANV Q SG SALH A+ G +V L+ + A
Sbjct: 171 ---------QH-------------GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208
Query: 228 TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
+++ + +PL +A +DI+R
Sbjct: 209 SSLKNCHNDTPLMVARSRRVIDILRGKATRP 239
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 199 bits (510), Expect = 8e-62
Identities = 62/313 (19%), Positives = 106/313 (33%), Gaps = 83/313 (26%)
Query: 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDT 153
++ + + + A QYG +L+E D + + T L AA R++ V
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 154 LVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV---QDSSGYSALHHAA 210
+ GA V + LH A
Sbjct: 61 YI------------------------------SK------GAIVDQLGGDLNSTPLHWAT 84
Query: 211 LNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKD 270
GH +V L+ A +++D +G S +HLAA G+ IV L+ G +V++M ++
Sbjct: 85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG---QDVDMMDQN 141
Query: 271 NETALHCAAQYGHTP-VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 329
T L AA H+ LL + + + H
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYH----------KN------------- 178
Query: 330 LIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGK 388
+ LH A G+ +V++ LL+AG +V+ + G +AL A
Sbjct: 179 ----------------TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN 222
Query: 389 LEVVKTLLEHGAD 401
+ ++ L E
Sbjct: 223 VWMINHLQEARQA 235
Score = 199 bits (510), Expect = 1e-61
Identities = 70/268 (26%), Positives = 104/268 (38%), Gaps = 43/268 (16%)
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
+D + + A G + R L+ G +V K+N T LH AA +V
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELVEAG---YDVRQPDKENVTLLHWAAINNRIDLVK 59
Query: 120 QLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASP 178
+ T L A + G L V L
Sbjct: 60 YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL------------------------ 95
Query: 179 LHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSP 238
++ G ++ D G S +H AA GH IV L+ +++D G +P
Sbjct: 96 ----------MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145
Query: 239 LHLAAWTGN-VDIVRVLLCHGPSVPNVNLMTKDN-ETALHCAAQYGHTPVVSQLLEHSCD 296
L AA+ + VD R+LL +VNL K + TALH A G+T V+S LLE +
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFN---VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202
Query: 297 PTIRNSRHETALDLAAQYGRLETVDTLV 324
+N + E+ALDLA Q + ++ L
Sbjct: 203 VDAQNIKGESALDLAKQRKNVWMINHLQ 230
Score = 188 bits (480), Expect = 2e-57
Identities = 66/282 (23%), Positives = 107/282 (37%), Gaps = 66/282 (23%)
Query: 17 DLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWT 76
D+++A + G E L+ D + + LH AA
Sbjct: 12 DIVKATQYGIY-------------------ERCRELVEAGYDVRQPDKENVTLLHWAAIN 52
Query: 77 GNVDIVRVLLCHGPSVPNVNLMTKD-NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 135
+D+V+ + G V+ + D N T LH A + GH +V QL+++ DP++ +
Sbjct: 53 NRIDLVKYYISKG---AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEG 109
Query: 136 ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGA 195
+ + LAAQ+G V L+ G
Sbjct: 110 CSCIHLAAQFGHTSIVAYLI------------------------------AK------GQ 133
Query: 196 NV--QDSSGYSALHHAALNGH-KEIVELLLTNEASTNIVD-TKGSSPLHLAAWTGNVDIV 251
+V D +G + L AA H + LLLT S N+ D ++ LH A GN ++
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193
Query: 252 RVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 293
+LL G NV+ E+AL A Q + +++ L E
Sbjct: 194 SLLLEAG---ANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232
Score = 182 bits (464), Expect = 6e-55
Identities = 60/224 (26%), Positives = 93/224 (41%), Gaps = 14/224 (6%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
D + A G E L+ D + + LH AA +D+V+ +
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62
Query: 256 CHGPSVPNVNLMTKD-NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY 314
G V+ + D N T LH A + GH +V QL+++ DP++ + + + LAAQ+
Sbjct: 63 SKG---AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF 119
Query: 315 GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLL-QAGLDVNIR 373
G V L+ + + +PL A+ H RLL + VN+
Sbjct: 120 GHTSIVAYLI-AKGQDVDMMDQNGM------TPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172
Query: 374 TASG--TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
TALH A L G V+ LLE GA++ + K + LDL
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Score = 134 bits (339), Expect = 1e-36
Identities = 55/236 (23%), Positives = 86/236 (36%), Gaps = 62/236 (26%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRA------KRSG--PL---AR----EIVELLLT 54
D++ L AA N I +V+ +S+ A PL R +V L+
Sbjct: 38 PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK 97
Query: 55 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 114
A +++D +G S +HLAA G+ IV L+ G +V++M ++ T L AA H
Sbjct: 98 YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG---QDVDMMDQNGMTPLMWAAYRTH 154
Query: 115 TP-VVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST 172
+ LL + + + H TAL A G + L++A
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL-------LLEA-------- 199
Query: 173 LFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEA 226
GANV Q+ G SAL A + ++ L
Sbjct: 200 ---------------------GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 200 bits (511), Expect = 1e-61
Identities = 67/278 (24%), Positives = 102/278 (36%), Gaps = 51/278 (18%)
Query: 60 NIVDTKGSSPLHLAAWTGNV-------------DIVRVLLCHGPSVPNVNLMTKDNETAL 106
N+ G +PL +A+ +G ++ + G S+ N + ETAL
Sbjct: 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ--TDRTGETAL 61
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
H AA+Y + +LLE S D I+++ T L A L+R
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR---------- 111
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
R + + G + L AA + ++E L+ + A
Sbjct: 112 -----------------------NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 227 STNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPV 286
N VD G S LH AA NVD VLL +G N ++ ET L AA+ G
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG---ANKDMQNNREETPLFLAAREGSYET 205
Query: 287 VSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
LL+H + I + D+A + + V L
Sbjct: 206 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 183 bits (467), Expect = 3e-55
Identities = 54/312 (17%), Positives = 95/312 (30%), Gaps = 69/312 (22%)
Query: 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDT 153
+VN+ D T L A+ G + + +
Sbjct: 2 DVNVRGPDGFTPLMIASCSGG--------------------GLETGNSEEEEDAPAVISD 41
Query: 154 LVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQ---DSSGYSALHHAA 210
+ GA++ D +G +ALH AA
Sbjct: 42 FI-----------------------YQ-------------GASLHNQTDRTGETALHLAA 65
Query: 211 LNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKD 270
+ + LL A NI D G +PLH A + ++L+ + +++ D
Sbjct: 66 RYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR--ATDLDARMHD 123
Query: 271 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 330
T L AA+ ++ L+ D + ++AL AA ++ L+ +
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGAN 182
Query: 331 IQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKL 389
N R + +PL LA+R G LL + +I A
Sbjct: 183 KDMQNNREE------TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 236
Query: 390 EVVKTLLEHGAD 401
++V+ L
Sbjct: 237 DIVRLLDLEHHH 248
Score = 161 bits (411), Expect = 5e-47
Identities = 54/270 (20%), Positives = 93/270 (34%), Gaps = 55/270 (20%)
Query: 13 GKDQDLLEAARNGNIQVVEKILSQRAK------RSG--PL---AR----EIVELLLTNEA 57
G + V+ + Q A R+G L AR + + LL A
Sbjct: 22 GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81
Query: 58 STNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPV 117
NI D G +PLH A + ++L+ + +++ D T L AA+ +
Sbjct: 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNR--ATDLDARMHDGTTPLILAARLAVEGM 139
Query: 118 VSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPAS 177
+ L+ D + ++AL AA ++ L+
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL---------------------- 177
Query: 178 PLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKG 235
+ GAN Q++ + L AA G E ++LL + A+ +I D
Sbjct: 178 -KN-------------GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 223
Query: 236 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
P +A + DIVR+L + +
Sbjct: 224 RLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253
Score = 117 bits (297), Expect = 1e-30
Identities = 43/220 (19%), Positives = 72/220 (32%), Gaps = 64/220 (29%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
NV+ G++ L A+ +G G + ++ +
Sbjct: 4 NVRGPDGFTPLMIASCSGG--------------------GLETGNSEEEEDAPAVISDFI 43
Query: 256 CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG 315
G S+ N + ETALH AA+Y + +LLE S D I+++ T
Sbjct: 44 YQGASLHNQ--TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT--------- 92
Query: 316 RLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAG-LDVNIRT 374
PLH A + V L++ D++ R
Sbjct: 93 -------------------------------PLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 375 ASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
G T L AA +++ L+ AD+ +D + L
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 200 bits (512), Expect = 2e-61
Identities = 58/282 (20%), Positives = 100/282 (35%), Gaps = 32/282 (11%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
+ ++ L + T D G S + A NV +V LL G N +NE L
Sbjct: 13 KQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGA---LKN--LLENEFPL 66
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
H AA T +V LL D + + + TAL A G ++TV V+ + Y
Sbjct: 67 HQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK-KNWRLMFYG 125
Query: 167 ARAQSTLFPASPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVEL 220
T + A L P + + S +H NGH +++ L
Sbjct: 126 KTGWKT-----SFYHAVMLNDVSIVSYFLSEIP-STFDLAILLSCIHITIKNGHVDMMIL 179
Query: 221 LLTNEASTNIVDTKGSSP-LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAA 279
LL STN ++ P + LA ++++++ L + N+ +A
Sbjct: 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD---INIY-------SANLENV 229
Query: 280 QYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 321
+ ++E + + + LD+ E +
Sbjct: 230 LLDDAEIAKMIIEKHVEYKSDS--YTKDLDIVKNNKLDEIIS 269
Score = 187 bits (478), Expect = 2e-56
Identities = 49/311 (15%), Positives = 98/311 (31%), Gaps = 56/311 (18%)
Query: 109 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 168
+ + L S D + +A A + V TL+
Sbjct: 6 RINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNA----------- 53
Query: 169 AQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAST 228
GA LH AA +IV++LL +
Sbjct: 54 -------------------------GALKNLLENEFPLHQAATLEDTKIVKILLFSGLDD 88
Query: 229 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDN-ETALHCAAQYGHTPVV 287
+ D KG++ L+ A +GN+ V++ + + K +T+ + A +V
Sbjct: 89 SQFDDKGNTALYYAVDSGNMQTVKLFVKKN---WRLMFYGKTGWKTSFYHAVMLNDVSIV 145
Query: 288 SQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASP 347
S L + + + + G ++ + L+ + N P
Sbjct: 146 SYFLSEIPSTFDLAIL-LSCIHITIKNGHVDMMILLL-DYMTST---NTNNSLLFIPD-- 198
Query: 348 LHLASRNGHRSVVARLLQAGLDVNIRTASGTALHEAALCGKLEVVKTLLEHGADLRIIDS 407
+ LA N ++ L + +++ +A E L E+ K ++E + +
Sbjct: 199 IKLAIDNKDIEMLQALFKYDINIY------SANLENVLLDDAEIAKMIIEKHVEYKSDS- 251
Query: 408 KHNTVLDLLKQ 418
+ LD++K
Sbjct: 252 -YTKDLDIVKN 261
Score = 174 bits (443), Expect = 2e-51
Identities = 45/296 (15%), Positives = 91/296 (30%), Gaps = 44/296 (14%)
Query: 19 LEAARNGNIQVVEKILSQ----RAKRSG--PL---AR----EIVELLLTNEASTNIVDTK 65
L + ++ LS +A G +V LL A N+++
Sbjct: 4 LSRINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE-- 61
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
PLH AA + IV++LL G + + TAL+ A G+ V ++ +
Sbjct: 62 NEFPLHQAATLEDTKIVKILLFSGL---DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 118
Query: 126 CDPTIR-NSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR 184
+ +T+ A + V + P S +H+ +
Sbjct: 119 WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILL--------SCIHITIK 170
Query: 185 NGHS------LRRGPGANVQDSSGYS-ALHHAALNGHKEIVELLLTNEASTNIVDTKGSS 237
NGH L N +S + + A N E+++ L + + S
Sbjct: 171 NGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------S 223
Query: 238 PLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 293
+ +I ++++ + + + + ++ L
Sbjct: 224 ANLENVLLDDAEIAKMIIEKHV---EYKSDSYTKDLDIVKNNKLDEIISKNKELRL 276
Score = 163 bits (416), Expect = 2e-47
Identities = 45/207 (21%), Positives = 71/207 (34%), Gaps = 13/207 (6%)
Query: 205 ALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNV 264
L K++ L + T D G S + A NV +V LL G
Sbjct: 3 DLSRINTWKSKQLKSFL--SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAG---ALK 57
Query: 265 NLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
N +NE LH AA T +V LL D + + + TAL A G ++TV V
Sbjct: 58 N--LLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV 115
Query: 325 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASGTALHEAA 384
+ + Y T + A S+V+ L + +H
Sbjct: 116 K-KNWRLMFYGKTGWKT-----SFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITI 169
Query: 385 LCGKLEVVKTLLEHGADLRIIDSKHNT 411
G ++++ LL++ +S
Sbjct: 170 KNGHVDMMILLLDYMTSTNTNNSLLFI 196
Score = 82.2 bits (204), Expect = 1e-17
Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 26/149 (17%)
Query: 18 LLEAARNGNIQVVEKILSQRA----KRSG--PL---AR----EIVELLLTNEASTNIVDT 64
A ++ +V LS+ + + +++ LLL STN ++
Sbjct: 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNS 192
Query: 65 KGSSP-LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 123
P + LA ++++++ L + N+ +A + ++E
Sbjct: 193 LLFIPDIKLAIDNKDIEMLQALFKYDI---NIY-------SANLENVLLDDAEIAKMIIE 242
Query: 124 HSCDPTIRNSRHETALDLAAQYGRLETVD 152
+ + + LD+ E +
Sbjct: 243 KHVEYKSDS--YTKDLDIVKNNKLDEIIS 269
Score = 54.8 bits (133), Expect = 1e-08
Identities = 9/122 (7%), Positives = 34/122 (27%), Gaps = 25/122 (20%)
Query: 18 LLEAARNGNIQVVEKILSQRAK--------RSGPL--A-----REIVELLLTNEASTNIV 62
+ +NG++ ++ +L + A E+++ L + +
Sbjct: 165 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-- 222
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
S + +I ++++ + + + + ++ L
Sbjct: 223 -----SANLENVLLDDAEIAKMIIEKHV---EYKSDSYTKDLDIVKNNKLDEIISKNKEL 274
Query: 123 EH 124
Sbjct: 275 RL 276
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 188 bits (480), Expect = 2e-57
Identities = 58/251 (23%), Positives = 90/251 (35%), Gaps = 46/251 (18%)
Query: 47 EIVELLLTNEAS-TNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA 105
++ + AS N D G + LHLAA D + LL + N+ T
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS---ADANIQDNMGRTP 61
Query: 106 LHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQA 164
LH A V L+ + D R T L LAA+ ++ L+
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI--------- 112
Query: 165 YNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLL 222
A+V D G SALH AA + + +LL
Sbjct: 113 --------------NS-------------HADVNAVDDLGKSALHWAAAVNNVDAAVVLL 145
Query: 223 TNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYG 282
N A+ ++ + + +PL LAA G+ + +VLL H N ++ + A +
Sbjct: 146 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF---ANRDITDHMDRLPRDIAQERM 202
Query: 283 HTPVVSQLLEH 293
H +V L E+
Sbjct: 203 HHDIVRLLDEY 213
Score = 188 bits (479), Expect = 2e-57
Identities = 61/248 (24%), Positives = 91/248 (36%), Gaps = 38/248 (15%)
Query: 77 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136
++ + G S+ N + ETALH AA+Y + +LLE S D I+++
Sbjct: 2 DAPAVISDFIYQGASLHNQT--DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR 59
Query: 137 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196
T L A L+ RN +
Sbjct: 60 TPLHAAVSADAQGVFQILI----------------------------RNR-----ATDLD 86
Query: 197 VQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLC 256
+ G + L AA + ++E L+ + A N VD G S LH AA NVD VLL
Sbjct: 87 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146
Query: 257 HGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR 316
+G N ++ ET L AA+ G LL+H + I + D+A +
Sbjct: 147 NG---ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203
Query: 317 LETVDTLV 324
+ V L
Sbjct: 204 HDIVRLLD 211
Score = 174 bits (443), Expect = 4e-52
Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 17/214 (7%)
Query: 194 GANV---QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDI 250
GA++ D +G +ALH AA + + LL A NI D G +PLH A +
Sbjct: 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73
Query: 251 VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDL 310
++L+ + + +++ D T L AA+ ++ L+ D + ++AL
Sbjct: 74 FQILIRNRAT--DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 131
Query: 311 AAQYGRLETVDTLVRTHPGLIQAYNARAQS--TLFPASPLHLASRNGHRSVVARLLQAGL 368
AA ++ L+ + + + T PL LA+R G LL
Sbjct: 132 AAAVNNVDAAVVLL-KNGANK---DMQNNREET-----PLFLAAREGSYETAKVLLDHFA 182
Query: 369 DVNIRTASG-TALHEAALCGKLEVVKTLLEHGAD 401
+ +I A ++V+ L E+
Sbjct: 183 NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216
Score = 160 bits (407), Expect = 9e-47
Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 46/230 (20%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
+ + LL A NI D G +PLH A + ++L+ + + +++ D T L
Sbjct: 39 DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT--DLDARMHDGTTPL 96
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
AA+ ++ L+ D + ++AL AA ++ L
Sbjct: 97 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL------------ 144
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
L+ G ++Q++ + L AA G E ++LL + A
Sbjct: 145 ----------------------LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182
Query: 227 STNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 276
+ +I D P +A + DIVR+L + LH
Sbjct: 183 NRDITDHMDRLPRDIAQERMHHDIVRLLDEYN----------LVRSPQLH 222
Score = 134 bits (340), Expect = 4e-37
Identities = 52/237 (21%), Positives = 83/237 (35%), Gaps = 60/237 (25%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL-------AREIVELLLTN 55
D+ L AAR +++L A G PL A+ + ++L+ N
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80
Query: 56 EAST-NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 114
A+ + G++PL LAA ++ L+ +VN + ++ALH AA +
Sbjct: 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA---DVNAVDDLGKSALHWAAAVNN 137
Query: 115 TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLF 174
LL++ + ++N+R ET L LAA+ G ET L+
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL------------------- 178
Query: 175 PASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTN 229
H AN D A H +IV LL +
Sbjct: 179 ----DH-------------FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 95.6 bits (239), Expect = 8e-23
Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 44/170 (25%)
Query: 246 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 305
++ + G S+ N + ETALH AA+Y + +LLE S D I+++
Sbjct: 2 DAPAVISDFIYQGASLHNQT--DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR 59
Query: 306 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
T PLH A + V L++
Sbjct: 60 T----------------------------------------PLHAAVSADAQGVFQILIR 79
Query: 366 AG-LDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
D++ R G T L AA +++ L+ AD+ +D + L
Sbjct: 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 129
Score = 59.7 bits (146), Expect = 2e-10
Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 28/112 (25%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
D L AA N+ +L A PL AR E ++LL +
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 107
A+ +I D P +A + DIVR+L + LH
Sbjct: 181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN----------LVRSPQLH 222
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 188 bits (480), Expect = 2e-57
Identities = 58/265 (21%), Positives = 97/265 (36%), Gaps = 39/265 (14%)
Query: 62 VDTKGSSPLHLAAWTGN----VDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPV 117
+ G S LHLA ++++R + +N +T LH A +
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLA---FLNFQNNLQQTPLHLAVITNQPEI 60
Query: 118 VSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPAS 177
LL CDP +R+ R T L LA + G L +V L +
Sbjct: 61 AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ--------------------- 99
Query: 178 PLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTK-GS 236
+ + + +G++ LH A+++G+ IVELL++ A N + G
Sbjct: 100 -------SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR 152
Query: 237 SPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 296
+ LHLA N D+V +LL G +VN +T + T + QL + + +
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGA---DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 209
Query: 297 PTIRNSRHETALDLAAQYGRLETVD 321
E + E +
Sbjct: 210 NLQMLPESEDEESYDTESEFTEFTE 234
Score = 176 bits (448), Expect = 1e-52
Identities = 54/229 (23%), Positives = 83/229 (36%), Gaps = 20/229 (8%)
Query: 198 QDSSGYSALHHAALNGHK----EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRV 253
G S LH A ++ K E++ + + A N + +PLHLA T +I
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 254 LLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTI------RNSRHETA 307
LL G + L T LH A + G V L + P + N T
Sbjct: 64 LLGAGC---DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Query: 308 LDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAG 367
L LA+ +G L V+ LV + AQ + LHLA + +V+ LL+ G
Sbjct: 121 LHLASIHGYLGIVELLVS------LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 174
Query: 368 LDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
DVN T G + + + L + + + +
Sbjct: 175 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 223
Score = 158 bits (403), Expect = 5e-46
Identities = 49/237 (20%), Positives = 78/237 (32%), Gaps = 48/237 (20%)
Query: 99 TKDNETALHCAAQYGHTP----VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
T+D ++ LH A + V+ Q+ +N+ +T L LA + E + L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 155 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGH 214
L G ++D G + LH A G
Sbjct: 65 ----------------------------------LGAGCDPELRDFRGNTPLHLACEQGC 90
Query: 215 KEIVELLLTNEAST------NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMT 268
V +L + + + G + LHLA+ G + IV +L+ G +VN
Sbjct: 91 LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA---DVNAQE 147
Query: 269 KDN-ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
N TALH A + +VS LL+ D + + L L
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 204
Score = 157 bits (400), Expect = 1e-45
Identities = 47/243 (19%), Positives = 72/243 (29%), Gaps = 36/243 (14%)
Query: 21 AARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVD 80
A + + E++ + + A N + +PLHLA T +
Sbjct: 15 AIIHEEKAL---------------TMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPE 59
Query: 81 IVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTI------RNSR 134
I LL G + L T LH A + G V L + P + N
Sbjct: 60 IAEALLGAGC---DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 116
Query: 135 HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHS------ 188
T L LA+ +G L V+ LV + AQ + LHLA +
Sbjct: 117 GHTCLHLASIHGYLGIVELLVS------LGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170
Query: 189 LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
L+ G N GYS I + L + + +
Sbjct: 171 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 230
Query: 249 DIV 251
+
Sbjct: 231 EFT 233
Score = 97.6 bits (244), Expect = 1e-23
Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 24/153 (15%)
Query: 21 AARNGNIQVVEKILSQRAKRSGPLA--------------------REIVELLLTNEASTN 60
A G + V + IVELL++ A N
Sbjct: 85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Query: 61 IVDTK-GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
+ G + LHLA N D+V +LL G +VN +T + T +
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGA---DVNRVTYQGYSPYQLTWGRPSTRIQQ 201
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 152
QL + + + E + E +
Sbjct: 202 QLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 184 bits (470), Expect = 5e-56
Identities = 53/260 (20%), Positives = 88/260 (33%), Gaps = 46/260 (17%)
Query: 66 GSSPLHLAAWTGNVDIVR-VLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 124
+ PLH A V+ +L + +D LH + + + S LL
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPS---LLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 58
Query: 125 SCDPTIRNSRHE---TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHL 181
+ + + + T +A G LE V +L
Sbjct: 59 MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL--------------------------- 91
Query: 182 ASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPL 239
R ++ + G + LH A E+ + L+ N AS I D PL
Sbjct: 92 -------YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPL 144
Query: 240 HLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE-HSCDPT 298
H AA G++ ++ +L G S VN K T L A GH L+E + +
Sbjct: 145 HRAASVGSLKLIELLCGLGKS--AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 299 IRNSRHETALDLAAQYGRLE 318
+ +++ A D+A +
Sbjct: 203 LVDNKGAKAEDVALNEQVKK 222
Score = 172 bits (439), Expect = 2e-51
Identities = 53/254 (20%), Positives = 85/254 (33%), Gaps = 48/254 (18%)
Query: 46 REIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA 105
++ ELL + + D G PLH + +I LL +V + T
Sbjct: 16 FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTP 75
Query: 106 LHCAAQYGHTPVVSQLLEHSCDPTI--RNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 163
H A G+ VV L + P + ++ T L LA E L+ +
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI-EN----- 129
Query: 164 AYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELL 221
GA+V +D LH AA G +++ELL
Sbjct: 130 ------------------------------GASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Query: 222 LTN-EASTNIVDTKGSSPLHLAAWTGNVDIVRVLL-CHGPSVPNVNLMTKDNETALHCAA 279
+++ N D +G +PL A G+ D +L+ +G +L+ A A
Sbjct: 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG---AEYDLVDNKGAKAEDVAL 216
Query: 280 QYGHTPVVSQLLEH 293
V L +
Sbjct: 217 NEQ---VKKFFLNN 227
Score = 164 bits (417), Expect = 3e-48
Identities = 51/220 (23%), Positives = 82/220 (37%), Gaps = 13/220 (5%)
Query: 202 GYSALHHAALNGHK-EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
LH A + ++ ELL + + D G PLH + +I LL +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTI--RNSRHETALDLAAQYGRLE 318
V + T H A G+ VV L + P + ++ T L LA E
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 319 TVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGL-DVNIRTASG 377
L+ + ++ + Q PLH A+ G ++ L G VN + G
Sbjct: 122 VSQFLI-ENGASVRIKDKFNQ------IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 378 -TALHEAALCGKLEVVKTLLE-HGADLRIIDSKHNTVLDL 415
T L A G + L+E +GA+ ++D+K D+
Sbjct: 175 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 173 bits (441), Expect = 6e-52
Identities = 48/253 (18%), Positives = 79/253 (31%), Gaps = 46/253 (18%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
G + A +T L ++ +T ++T G T ++
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEG---DIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 68
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
+ L AA+ G L +
Sbjct: 69 QA-----ESIDNPLHEAAKRGNLSWLREC------------------------------- 92
Query: 186 GHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNE-ASTNIVDTKGSSPLHLAAW 244
L G N D +G +AL+ A GHK+IVE+L T N + G + LH AAW
Sbjct: 93 ---LDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149
Query: 245 TGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 304
G DIV++LL G +L + + A A ++ + T+ N+
Sbjct: 150 KGYADIVQLLLAKGA---RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206
Query: 305 ETALDLAAQYGRL 317
+ +
Sbjct: 207 YLDDEDSDLEHHH 219
Score = 164 bits (417), Expect = 3e-48
Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 17/220 (7%)
Query: 196 NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
G + A + L E + + G ++
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN- 64
Query: 256 CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG 315
V + + LH AA+ G+ + + L++ + TAL A G
Sbjct: 65 -------YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117
Query: 316 RLETVDTLVRTHPG-LIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT 374
+ V+ L T P + N + LH A+ G+ +V LL G ++R
Sbjct: 118 HKDIVEMLF-TQPNIELNQQNKLGD------TALHAAAWKGYADIVQLLLAKGARTDLRN 170
Query: 375 ASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
A A ++K A + +++
Sbjct: 171 IEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210
Score = 163 bits (416), Expect = 3e-48
Identities = 35/239 (14%), Positives = 68/239 (28%), Gaps = 48/239 (20%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
+ L E + + G ++ V + + L
Sbjct: 26 RTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN--------YVAEQAESIDNPL 77
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
H AA+ G+ + + L++ + TAL A G + V+ L
Sbjct: 78 HEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQP-------- 129
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTN 224
+ Q+ G +ALH AA G+ +IV+LLL
Sbjct: 130 ---------------------------NIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Query: 225 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 283
A T++ + + +A +++ L ++ + H
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACASLLKKKQGTD---AVRTLSNAEDYLDDEDSDLEHH 218
Score = 116 bits (292), Expect = 3e-30
Identities = 40/181 (22%), Positives = 60/181 (33%), Gaps = 32/181 (17%)
Query: 11 VMGKDQD----LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKG 66
V + + L EAA+ GN+ + L N N +D G
Sbjct: 66 VAEQAESIDNPLHEAAKRGNL-------------------SWLRECLDNRVGVNGLDKAG 106
Query: 67 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC 126
S+ L+ A G+ DIV +L +N K +TALH AA G+ +V LL
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNI--ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Query: 127 DPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNG 186
+RN + A D+A + + NA +
Sbjct: 165 RTDLRNIEKKLAFDMATNAACASLLKKKQ-GTDAVRTLSNAEDY------LDDEDSDLEH 217
Query: 187 H 187
H
Sbjct: 218 H 218
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 167 bits (426), Expect = 6e-50
Identities = 42/241 (17%), Positives = 82/241 (34%), Gaps = 51/241 (21%)
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
+ + L A + +L V+ + + T L+ A + L+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTY---QVDEVDTEGNTPLNIAVHNNDIEIAKALI 59
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 182
+ D ++NS ++ A GR E + +++
Sbjct: 60 DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH------------------------- 94
Query: 183 SRNGHSLRRGPGA---NVQDSSGYSALHHAALNGHKEIVELLLTN-EASTNIVDTKGSSP 238
N + G +AL AA GH + V+LLL + + + G +
Sbjct: 95 -----------ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA 143
Query: 239 LHLAAWT-----GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 293
L A DIV++L+ +G + ++ TA+ A Q G+T + L ++
Sbjct: 144 LIEAVGLREGNQLYQDIVKLLMENG---ADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Query: 294 S 294
+
Sbjct: 201 N 201
Score = 163 bits (415), Expect = 3e-48
Identities = 49/209 (23%), Positives = 93/209 (44%), Gaps = 16/209 (7%)
Query: 197 VQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLC 256
++ + L A K++ E+L + VDT+G++PL++A +++I + L+
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 257 HGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYG 315
G ++NL +++ A G T +++ +L+H+ D N AL AA+ G
Sbjct: 61 RG---ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG 117
Query: 316 RLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA-----SRNGHRSVVARLLQAGLDV 370
++ V L+ I N + L A ++ +V L++ G D
Sbjct: 118 HIDNVKLLLEDGREDIDFQNDFGY------TALIEAVGLREGNQLYQDIVKLLMENGADQ 171
Query: 371 NIRTASG-TALHEAALCGKLEVVKTLLEH 398
+I+ SG TA+ A G E+ K L ++
Sbjct: 172 SIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 147 bits (375), Expect = 2e-42
Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 46/219 (21%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
++ E+L + VDT+G++PL++A +++I + L+ G ++NL +++
Sbjct: 20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG---ADINLQNSISDSPY 76
Query: 107 HCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY 165
A G T +++ +L+H+ D N AL AA+ G ++ V L
Sbjct: 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL----------- 125
Query: 166 NARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAAL-----NGHKEIV 218
L G ++ Q+ GY+AL A +++IV
Sbjct: 126 -----------------------LEDGR-EDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161
Query: 219 ELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257
+LL+ N A +I D G + + A G +I ++L +
Sbjct: 162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 125 bits (317), Expect = 5e-34
Identities = 50/233 (21%), Positives = 80/233 (34%), Gaps = 60/233 (25%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
K + L A + +V E + + G PL EI + L+
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHT 115
A N+ ++ SP A G +I+ +L H P++N + AL AA+ GH
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHA--TPDLNKHNRYGGNALIPAAEKGHI 119
Query: 116 PVVSQLLEHSC-DPTIRNSRHETALDLAAQY-----GRLETVDTLVRTHPGLIQAYNARA 169
V LLE D +N TAL A + V L
Sbjct: 120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL--------------- 164
Query: 170 QSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222
+ G +++D+SG +A+ +A G+ EI ++L
Sbjct: 165 -------------------MENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 109 bits (276), Expect = 3e-28
Identities = 34/184 (18%), Positives = 56/184 (30%), Gaps = 44/184 (23%)
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
+ + L A + +L V+ + + T L+ A + L+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTY---QVDEVDTEGNTPLNIAVHNNDIEIAKALI 59
Query: 292 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 351
+ D ++NS ++ A GR E + +
Sbjct: 60 DRGADINLQNSISDSPYLYAGAQGRTEILAYM---------------------------- 91
Query: 352 SRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHG-ADLRIIDSKH 409
L A D+N G AL AA G ++ VK LLE G D+ +
Sbjct: 92 -----------LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFG 140
Query: 410 NTVL 413
T L
Sbjct: 141 YTAL 144
Score = 53.6 bits (130), Expect = 2e-08
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 24/99 (24%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQ--------------------RAKRSGPLAREIV 49
++ L+ AA G+I V+ +L + L ++IV
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161
Query: 50 ELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 88
+LL+ N A +I D G + + A G +I ++L +
Sbjct: 162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 165 bits (421), Expect = 1e-48
Identities = 36/219 (16%), Positives = 73/219 (33%), Gaps = 12/219 (5%)
Query: 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
+ +G +L ++ + + + + L ++ G D+V+ ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 259 PSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLE 318
+ +L + TALH A GHT +V L++ + +S T L AA ++
Sbjct: 61 D---DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 319 TVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG- 377
LV + A T A+ G+ L + I
Sbjct: 118 VCKFLV-ESGAAVFAMTYSDMQT---AADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVI 173
Query: 378 TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLL 416
AL + E+ ++ G + II + ++
Sbjct: 174 YALWDYEPQNDDEL---PMKEGDCMTIIHREDEDEIEWW 209
Score = 155 bits (395), Expect = 7e-45
Identities = 43/261 (16%), Positives = 73/261 (27%), Gaps = 53/261 (20%)
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
+ G L T + HG V L ++ G +V +++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHG---MRVKF-NPLPLALLLDSSLEGEFDLVQRII 57
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 182
DP++ N TAL A G E V LV
Sbjct: 58 YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV--------------------------- 90
Query: 183 SRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKG---SS 237
G NV DS G++ LH AA + ++ + L+ + A+ + ++
Sbjct: 91 ---QF------GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA 141
Query: 238 PLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDP 297
G + L + +M K AL + ++
Sbjct: 142 DKCEEMEEGYTQCSQFLYGVQ---EKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCM 195
Query: 298 TIRNSRH--ETALDLAAQYGR 316
TI + E A +
Sbjct: 196 TIIHREDEDEIEWWWARLNDK 216
Score = 149 bits (379), Expect = 1e-42
Identities = 39/220 (17%), Positives = 66/220 (30%), Gaps = 35/220 (15%)
Query: 100 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 159
+ +L + S+ + H N L ++ G + V +
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRI----- 56
Query: 160 GLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVE 219
+ ++ + G +ALH+A GH EIV+
Sbjct: 57 -----------------------------IYEVDDPSLPNDEGITALHNAVCAGHTEIVK 87
Query: 220 LLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAA 279
L+ + N D+ G +PLH AA NV + + L+ G +V +
Sbjct: 88 FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM 147
Query: 280 QYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLET 319
+ G+T L I N AL E
Sbjct: 148 EEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187
Score = 137 bits (347), Expect = 6e-38
Identities = 37/276 (13%), Positives = 70/276 (25%), Gaps = 71/276 (25%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
L R R+ + + + + L ++ G
Sbjct: 9 LPPGKRTNL-------------------RKTGSERIAHGMRVKF-NPLPLALLLDSSLEG 48
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET 137
D+V+ ++ + +L + TALH A GHT +V L++ + +S T
Sbjct: 49 EFDLVQRIIYEVD---DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWT 105
Query: 138 ALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV 197
L AA ++ LV GA V
Sbjct: 106 PLHCAASCNNVQVCKFLV-ES-----------------------------------GAAV 129
Query: 198 -----QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
D + G+ + + L + I++ L + +
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE--- 186
Query: 253 VLLCHGPSVPNVNLMTKDNETALHCAAQYGH---TP 285
L + ++E A P
Sbjct: 187 -LPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVP 221
Score = 38.0 bits (89), Expect = 0.004
Identities = 10/103 (9%), Positives = 20/103 (19%), Gaps = 26/103 (25%)
Query: 17 DLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWT 76
D E G + + L + I++ L
Sbjct: 142 DKCEEMEEGYT-------------------QCSQFLYGVQEKMGIMNKGVIYALWDYEPQ 182
Query: 77 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH---TP 116
+ + L + ++E A P
Sbjct: 183 NDDE----LPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVP 221
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 161 bits (409), Expect = 7e-48
Identities = 47/203 (23%), Positives = 71/203 (34%), Gaps = 44/203 (21%)
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
+ ++H A G + + E N D +G +PL AA G + +V LL +G
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA- 60
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 320
+ L+ K E+AL A G+T +V LL+ D + G
Sbjct: 61 --DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD-----------WNGG---- 103
Query: 321 DTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TA 379
+PL A H V LL++G D I T SG +
Sbjct: 104 -------------------------TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS 138
Query: 380 LHEAALCGKLEVVKTLLEHGADL 402
+ A G V + + H L
Sbjct: 139 MDLAVALGYRSVQQVIESHLLKL 161
Score = 156 bits (398), Expect = 4e-46
Identities = 44/205 (21%), Positives = 71/205 (34%), Gaps = 40/205 (19%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
S +H A G + + + +N ++ T L AA +G VV LL++
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQEN---VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 59
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
DP + E+AL LA G + V L
Sbjct: 60 ADPQLLGKGRESALSLACSKGYTDIVKML------------------------------- 88
Query: 186 GHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWT 245
L G N D +G + L +A H + V++LL + A I G + + LA
Sbjct: 89 ---LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVAL 145
Query: 246 GNVDIVRVLLCHGPSVPNVNLMTKD 270
G + +V+ H + K+
Sbjct: 146 GYRSVQQVIESHL---LKLLQNIKE 167
Score = 154 bits (393), Expect = 2e-45
Identities = 39/196 (19%), Positives = 65/196 (33%), Gaps = 37/196 (18%)
Query: 101 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 160
N ++H A G ++ +E + T L AA +G++ V+ L
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL------ 55
Query: 161 LIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVEL 220
L+ G + SAL A G+ +IV++
Sbjct: 56 ----------------------------LQNGADPQLLGKGRESALSLACSKGYTDIVKM 87
Query: 221 LLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ 280
LL N D G +PL A +V V++LL G + + T ++ A
Sbjct: 88 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA---DPTIETDSGYNSMDLAVA 144
Query: 281 YGHTPVVSQLLEHSCD 296
G+ V + H
Sbjct: 145 LGYRSVQQVIESHLLK 160
Score = 152 bits (387), Expect = 1e-44
Identities = 44/153 (28%), Positives = 61/153 (39%), Gaps = 9/153 (5%)
Query: 178 PLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
+H + G + + N D G++ L AA +G +VE LL N A ++
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
S L LA G DIV++LL G +VN + T L A H V LL
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCG---VDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 292 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
E DPTI ++DLA G +
Sbjct: 123 ESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
Score = 119 bits (302), Expect = 2e-32
Identities = 42/152 (27%), Positives = 57/152 (37%), Gaps = 17/152 (11%)
Query: 18 LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTNEASTNIVD 63
+ + A G + + + Q G PL A +VE LL N A ++
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 123
S L LA G DIV++LL G +VN + T L A H V LLE
Sbjct: 67 KGRESALSLACSKGYTDIVKMLLDCG---VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 124 HSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
DPTI ++DLA G +
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
Score = 115 bits (290), Expect = 1e-30
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 8/147 (5%)
Query: 270 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 329
N ++H A G ++ +E + T L AA +G++ V+ L+ +
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL-QNGA 60
Query: 330 LIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGK 388
Q + S L LA G+ +V LL G+DVN +G T L A
Sbjct: 61 DPQLLGKGRE------SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNH 114
Query: 389 LEVVKTLLEHGADLRIIDSKHNTVLDL 415
++ VK LLE GAD I +DL
Sbjct: 115 VKCVKMLLESGADPTIETDSGYNSMDL 141
Score = 63.9 bits (157), Expect = 2e-12
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 21/106 (19%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
+ L A G +V+ +L +G PL + V++LL +
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKD 101
A I G + + LA G + +V+ H + K+
Sbjct: 125 GADPTIETDSGYNSMDLAVALGYRSVQQVIESHL---LKLLQNIKE 167
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 161 bits (409), Expect = 2e-47
Identities = 47/236 (19%), Positives = 81/236 (34%), Gaps = 50/236 (21%)
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
+ +D G + + L N N T L A G +
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFL---------RNYRDSYNRTPLMVACMLGMENAID 52
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPL 179
+L+E+ ++ TAL A + RL + L+
Sbjct: 53 KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL-----------------------S 89
Query: 180 HLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSS 237
G+NV +D SG + L + + G+ E+ LL + A+ N + +G +
Sbjct: 90 K-------------GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGET 136
Query: 238 PLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 293
PL +A+ G +IV+ LL G +++ TA A +G V+ E
Sbjct: 137 PLIVASKYGRSEIVKKLLELGA---DISARDLTGLTAEASARIFGRQEVIKIFTEV 189
Score = 154 bits (391), Expect = 6e-45
Identities = 50/224 (22%), Positives = 81/224 (36%), Gaps = 44/224 (19%)
Query: 178 PLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSS 237
+ + N +DS + L A + G + ++ L+ N D +GS+
Sbjct: 11 VEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGST 70
Query: 238 PLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDP 297
L A + I LL G NVN +T L + +G++ + LLEH +
Sbjct: 71 ALIWAVKNNRLGIAEKLLSKGS---NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127
Query: 298 TIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHR 357
RN G +PL +AS+ G
Sbjct: 128 NDRN-----------LEGE-----------------------------TPLIVASKYGRS 147
Query: 358 SVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGA 400
+V +LL+ G D++ R +G TA A + G+ EV+K E
Sbjct: 148 EIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 152 bits (387), Expect = 3e-44
Identities = 53/227 (23%), Positives = 82/227 (36%), Gaps = 47/227 (20%)
Query: 100 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 159
K+ E + + L + R+S + T L +A G +D LV +
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFLRNY------RDSYNRTPLMVACMLGMENAIDKLV-EN- 57
Query: 160 GLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEI 217
+ +D G +AL A N I
Sbjct: 58 ----------------------------------FDKLEDKDIEGSTALIWAVKNNRLGI 83
Query: 218 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 277
E LL+ ++ N D G +PL + G ++ LL HG NVN + ET L
Sbjct: 84 AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG---ANVNDRNLEGETPLIV 140
Query: 278 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
A++YG + +V +LLE D + R+ TA A +GR E +
Sbjct: 141 ASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 142 bits (362), Expect = 1e-40
Identities = 43/239 (17%), Positives = 83/239 (34%), Gaps = 53/239 (22%)
Query: 21 AARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVD 80
+ + N ++VEKI ++ + ++ L N D+ +PL +A G +
Sbjct: 2 SHMDKNGEIVEKIKDEK------SINQNLDFLR------NYRDSYNRTPLMVACMLGMEN 49
Query: 81 IVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALD 140
+ L+ + + + TAL A + + +LL + ++ +T L
Sbjct: 50 AIDKLVENF---DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106
Query: 141 LAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--Q 198
+ +G E L+ H GANV +
Sbjct: 107 WSIIFGYSEMSYFLL-----------------------EH-------------GANVNDR 130
Query: 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257
+ G + L A+ G EIV+ LL A + D G + A G +++++
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189
Score = 110 bits (279), Expect = 1e-28
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 21/160 (13%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
+D L+ A G ++K++ K G L + I E LL+
Sbjct: 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHT 115
++ N D G +PL + G ++ LL HG NVN + ET L A++YG +
Sbjct: 91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA---NVNDRNLEGETPLIVASKYGRS 147
Query: 116 PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
+V +LLE D + R+ TA A +GR E +
Sbjct: 148 EIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 99.8 bits (250), Expect = 1e-24
Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 50/186 (26%)
Query: 229 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 288
+ +D G + + L N N T L A G +
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFL---------RNYRDSYNRTPLMVACMLGMENAID 52
Query: 289 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPL 348
+L+E+ ++ T L
Sbjct: 53 KLVENFDKLEDKDIEGST----------------------------------------AL 72
Query: 349 HLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDS 407
A +N + +LL G +VN + SG T L + + G E+ LLEHGA++ +
Sbjct: 73 IWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL 132
Query: 408 KHNTVL 413
+ T L
Sbjct: 133 EGETPL 138
Score = 88.2 bits (220), Expect = 1e-20
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 21/129 (16%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
KD + L+ A +N + + EK+LS+ + SG PL E+ LL +
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHT 115
A+ N + +G +PL +A+ G +IV+ LL G +++ TA A +G
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA---DISARDLTGLTAEASARIFGRQ 180
Query: 116 PVVSQLLEH 124
V+ E
Sbjct: 181 EVIKIFTEV 189
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 162 bits (413), Expect = 2e-47
Identities = 43/327 (13%), Positives = 80/327 (24%), Gaps = 87/327 (26%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
G + + T + + GH+P +
Sbjct: 1 GEVNKIIGSRTAG----------------------EGAMEYLIEWKDGHSPSWVPSSYIA 38
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
D S +ET AA+ + + L L
Sbjct: 39 ADV---VSEYETPWWTAARKADEQALSQL------------------------LE----- 66
Query: 186 GHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTK-GSSPLHLA 242
+V D +G +AL A G + V LL A + D + G + LH+A
Sbjct: 67 --------DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118
Query: 243 AWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS 302
A ++V L+ G ++ + + TAL A + T ++
Sbjct: 119 AGYVRPEVVEALVELGA---DIEVEDERGLTALELAREILKTTPKGNPMQFGRRI---GL 172
Query: 303 RHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVAR 362
+ + E + + + G +L
Sbjct: 173 EKVINVLEGQVFEYAEVDEIVEKRGKGKD---------------VEYLVRWKDGGDCEWV 217
Query: 363 LLQAGLDVNIRTASGTALHEAALCGKL 389
+ + L A +
Sbjct: 218 KGVHVAEDVAKDYE-DGLEYAVAESVI 243
Score = 160 bits (407), Expect = 1e-46
Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 27/231 (11%)
Query: 176 ASPLHLASRNGHS----LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
A + ++GHS A+V S + AA ++ + LL + + V
Sbjct: 16 AMEYLIEWKDGHSPSWVPSSYIAADV-VSEYETPWWTAARKADEQALSQLLED-RDVDAV 73
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLM-TKDNETALHCAAQYGHTPVVSQL 290
D G + L A G+ VR+L G +++ + TALH AA Y VV L
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLAEAGA---DLDHRDMRGGLTALHMAAGYVRPEVVEAL 130
Query: 291 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHL 350
+E D + + R TAL+LA + + + + R +
Sbjct: 131 VELGADIEVEDERGLTALELAREILKTTPKGNPM--------QFGRRIGLE--KVINVLE 180
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASGTALHEAALCGKLEVVKTLLEHGAD 401
+ V + + G + + H A+
Sbjct: 181 GQVFEYAEVDEIVEKRG-------KGKDVEYLVRWKDGGDCEWVKGVHVAE 224
Score = 159 bits (404), Expect = 4e-46
Identities = 44/284 (15%), Positives = 74/284 (26%), Gaps = 63/284 (22%)
Query: 54 TNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYG 113
N+ + +G+ + G+ +V + ET AA+
Sbjct: 3 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA---ADVV---SEYETPWWTAARKA 56
Query: 114 HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTL 173
+SQLL D + TAL A G + V L
Sbjct: 57 DEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLL------------------- 96
Query: 174 FPASPLHLASRNGHSLRRGPGANVQDS-SGYSALHHAALNGHKEIVELLLTNEASTNIVD 232
G + +D G +ALH AA E+VE L+ A + D
Sbjct: 97 ---------------AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 141
Query: 233 TKGSSPLHLAAWTGNVDIVRVLLCHG-------------------PSVPNVNLMTKDNET 273
+G + L LA + G V + +
Sbjct: 142 ERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKD 201
Query: 274 ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRL 317
+ H + ++ +E L+ A +
Sbjct: 202 VEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESVI 243
Score = 150 bits (380), Expect = 1e-42
Identities = 51/278 (18%), Positives = 80/278 (28%), Gaps = 66/278 (23%)
Query: 18 LLEAARNGNIQVVEKILSQRA----KRSGPL---AR----EIVELLLTNEASTNIVDTKG 66
L ++G+ A + P AR + + LL + + VD G
Sbjct: 19 YLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLED-RDVDAVDENG 77
Query: 67 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLM-TKDNETALHCAAQYGHTPVVSQLLEHS 125
+ L A G+ VR+L G +++ + TALH AA Y VV L+E
Sbjct: 78 RTALLFVAGLGSDKCVRLLAEAG---ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 134
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
D + + R TAL+LA + + + R
Sbjct: 135 ADIEVEDERGLTALELAREILKTTPKGNP------------------------MQFGRRI 170
Query: 186 GHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWT 245
G + + + E+ E++ G +L W
Sbjct: 171 GL-------------EKVINVLEGQVFEYAEVDEIVEKRGK--------GKDVEYLVRWK 209
Query: 246 GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 283
D V H KD E L A
Sbjct: 210 DGGDCEWVKGVHV---AEDV--AKDYEDGLEYAVAESV 242
Score = 140 bits (354), Expect = 8e-39
Identities = 38/209 (18%), Positives = 61/209 (29%), Gaps = 47/209 (22%)
Query: 195 ANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVL 254
+ G +GH A V ++ +P AA + + L
Sbjct: 8 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQL 64
Query: 255 LCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY 314
L +V+ + ++ TAL A G V L E D R+ R
Sbjct: 65 L-EDR---DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR----------G 110
Query: 315 GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT 374
G + LH+A+ VV L++ G D+ +
Sbjct: 111 GL-----------------------------TALHMAAGYVRPEVVEALVELGADIEVED 141
Query: 375 ASG-TALHEAALCGKLEVVKTLLEHGADL 402
G TAL A K ++ G +
Sbjct: 142 ERGLTALELAREILKTTPKGNPMQFGRRI 170
Score = 109 bits (274), Expect = 1e-27
Identities = 41/195 (21%), Positives = 63/195 (32%), Gaps = 49/195 (25%)
Query: 223 TNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYG 282
N+ + +G+ + G+ +V + ET AA+
Sbjct: 3 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA---DVV---SEYETPWWTAARKA 56
Query: 283 HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTL 342
+SQLL D + T
Sbjct: 57 DEQALSQLL-EDRDVDAVDENGRT------------------------------------ 79
Query: 343 FPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG--TALHEAALCGKLEVVKTLLEHGA 400
L + G V L +AG D++ R G TALH AA + EVV+ L+E GA
Sbjct: 80 ----ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 135
Query: 401 DLRIIDSKHNTVLDL 415
D+ + D + T L+L
Sbjct: 136 DIEVEDERGLTALEL 150
Score = 87.3 bits (217), Expect = 9e-20
Identities = 27/173 (15%), Positives = 47/173 (27%), Gaps = 40/173 (23%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRA------KRSG--PL---AR----EIVELLLT 54
D++ LL A G+ + V + A R G L A E+VE L+
Sbjct: 73 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 132
Query: 55 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG-------------------PSVPNV 95
A + D +G + L LA + G V +
Sbjct: 133 LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEI 192
Query: 96 NLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRL 148
+ + H + ++ +E L+ A +
Sbjct: 193 VEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESVI 243
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 158 bits (403), Expect = 8e-47
Identities = 41/222 (18%), Positives = 68/222 (30%), Gaps = 45/222 (20%)
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
+ + GN VR+ L + + ++N + LH A + G + VV L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLI 59
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 182
+ N +T L LAA +G + V L
Sbjct: 60 MRGARINVMNRGDDTPLHLAASHGHRDIVQKL---------------------------- 91
Query: 183 SRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLA 242
L+ N + G LH+A G ++ E L+ N A +I + G P+ A
Sbjct: 92 ------LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Query: 243 AWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHT 284
+ G ++ N G T
Sbjct: 146 KAPLRELLRERAEKMGQNL---------NRIPYKDTFWKGTT 178
Score = 155 bits (395), Expect = 1e-45
Identities = 47/215 (21%), Positives = 72/215 (33%), Gaps = 45/215 (20%)
Query: 199 DSSGYSALHHAALNGHKEIVELLLTNEAST-NIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257
+ G+ V L L N + N D G SPLH A G +V +L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 258 GPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRL 317
G +N+M + ++T LH AA +GH +V +LL++ D N
Sbjct: 62 G---ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNV----------- 107
Query: 318 ETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG 377
PLH A G V L+ G V+I G
Sbjct: 108 -----------------------------PLHYACFWGQDQVAEDLVANGALVSICNKYG 138
Query: 378 -TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNT 411
+ +A + + + + G +L I K
Sbjct: 139 EMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTF 173
Score = 149 bits (380), Expect = 2e-43
Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 23/186 (12%)
Query: 178 PLHLASRNGHS------LRRGPGA-NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+ R G++ L N D G+S LH A G +VE+L+ A N+
Sbjct: 8 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
++ +PLHLAA G+ DIV+ LL + ++N + + LH A +G V L
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQYK---ADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Query: 291 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHL 350
+ + +I N E +D A R + P
Sbjct: 125 VANGALVSICNKYGEMPVDKAKAPLRELLRERAE--------KMGQNLNRI-----PYKD 171
Query: 351 ASRNGH 356
G
Sbjct: 172 TFWKGT 177
Score = 120 bits (304), Expect = 2e-32
Identities = 42/187 (22%), Positives = 64/187 (34%), Gaps = 31/187 (16%)
Query: 17 DLLEAARNGNIQVVEKILSQRAK------RSG--PL---AR----EIVELLLTNEASTNI 61
D+ R GN V L G PL R +VE+L+ A N+
Sbjct: 8 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
++ +PLHLAA G+ DIV+ LL + ++N + + LH A +G V L
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQYKA---DINAVNEHGNVPLHYACFWGQDQVAEDL 124
Query: 122 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHL 181
+ + +I N E +D A R + P
Sbjct: 125 VANGALVSICNKYGEMPVDKAKAPLRELLRERAE--------KMGQNLNRI-----PYKD 171
Query: 182 ASRNGHS 188
G +
Sbjct: 172 TFWKGTT 178
Score = 119 bits (301), Expect = 4e-32
Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 43/185 (23%)
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
+ + GN VR+ L + + ++N + LH A + G + VV L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLI 59
Query: 292 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 351
+ N +T PLHLA
Sbjct: 60 MRGARINVMNRGDDT----------------------------------------PLHLA 79
Query: 352 SRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHN 410
+ +GHR +V +LLQ D+N G LH A G+ +V + L+ +GA + I +
Sbjct: 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE 139
Query: 411 TVLDL 415
+D
Sbjct: 140 MPVDK 144
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 158 bits (401), Expect = 6e-46
Identities = 66/235 (28%), Positives = 91/235 (38%), Gaps = 19/235 (8%)
Query: 177 SPLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+LA L A D +ALH A GH EIVE LL N
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D G SPLH+AA G +IV+ LL G +VN + ++ T LH AA + L
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLVKG---AHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 291 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHL 350
LE +P ++ TA+ AA G L+ V L+ + + +PLHL
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL-FYKASTNIQDTEGN------TPLHL 178
Query: 351 ASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRI 404
A L+ G + I T L A G L ++ L G + +
Sbjct: 179 ACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231
Score = 154 bits (391), Expect = 2e-44
Identities = 55/216 (25%), Positives = 81/216 (37%), Gaps = 11/216 (5%)
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
S + A E+ E +L +++ D + LH A G+ +IV LL G
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-- 63
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 320
VN + LH AA G +V LL N T L AA R E
Sbjct: 64 -VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 321 DTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TA 379
L+ A + + +H A+ G+ +V LL NI+ G T
Sbjct: 123 VMLL-EGGANPDAKDHYDA------TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTP 175
Query: 380 LHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
LH A ++E K L+ GA + I + + T L +
Sbjct: 176 LHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211
Score = 151 bits (383), Expect = 2e-43
Identities = 64/253 (25%), Positives = 100/253 (39%), Gaps = 42/253 (16%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
E+ E +L +++ D + LH A G+ +IV LL G VN + L
Sbjct: 21 ELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG---VPVNDKDDAGWSPL 77
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 166
H AA G +V LL N T L AA R E L
Sbjct: 78 HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML------------ 125
Query: 167 ARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
L G + +D +A+H AA G+ ++V +LL +A
Sbjct: 126 ----------------------LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 227 STNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPV 286
STNI DT+G++PLHLA V+ + L+ G ++ + K+ +T L A G +
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQG---ASIYIENKEEKTPLQVAK--GGLGL 218
Query: 287 VSQLLEHSCDPTI 299
+ + L + ++
Sbjct: 219 ILKRLAEGEEASM 231
Score = 99 bits (249), Expect = 2e-24
Identities = 54/235 (22%), Positives = 83/235 (35%), Gaps = 57/235 (24%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL-------AREIVELLLTN 55
DQD L A G+ ++VE +L +G PL EIV+ LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHT 115
A N V+ G +PLH AA +I +LL G N + + TA+H AA G+
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG---ANPDAKDHYDATAMHRAAAKGNL 152
Query: 116 PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFP 175
+V LL + I+++ T L LA R+E LV
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-------------------- 192
Query: 176 ASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+G +++ + L A G ++ L ++
Sbjct: 193 --------------TQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 155 bits (395), Expect = 1e-45
Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 45/212 (21%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEAST-NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
++H A G + ++ L + N D +G +PL A+ G ++ VR LL G
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA- 60
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 320
+ +++ K+ E+AL A+ G+T +V LLE D I + G
Sbjct: 61 --DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD-----------WNGG---- 103
Query: 321 DTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TA 379
+PL A R H V LL G D+ SG T
Sbjct: 104 -------------------------TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP 138
Query: 380 LHEAALCGKLEVVKTLLEHGADLRIIDSKHNT 411
+ A G +V + + H L +
Sbjct: 139 MDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 153 bits (389), Expect = 8e-45
Identities = 48/208 (23%), Positives = 71/208 (34%), Gaps = 39/208 (18%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
S +H A G +D ++ L G ++ VN + T L A+ +G V LLE
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNL--VNKPDERGFTPLIWASAFGEIETVRFLLEWG 59
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
DP I E+AL LA+ G + V L
Sbjct: 60 ADPHILAKERESALSLASTGGYTDIVGLL------------------------------- 88
Query: 186 GHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWT 245
L R N+ D +G + L +A H + VE LL A G +P+ LA
Sbjct: 89 ---LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145
Query: 246 GNVDIVRVLLCHGPSVPNVNLMTKDNET 273
G + +V+ H +
Sbjct: 146 GYRKVQQVIENHI---LKLFQSNLVPAD 170
Score = 151 bits (384), Expect = 4e-44
Identities = 43/199 (21%), Positives = 65/199 (32%), Gaps = 38/199 (19%)
Query: 104 TALHCAAQYGHTPVVSQLLEHSCD-PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLI 162
++H A G + + L + + R T L A+ +G +ETV L
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL-------- 55
Query: 163 QAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222
L G ++ SAL A+ G+ +IV LLL
Sbjct: 56 --------------------------LEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 223 TNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYG 282
+ NI D G +PL A +V V LL G ++ T + A G
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA---DLTTEADSGYTPMDLAVALG 146
Query: 283 HTPVVSQLLEHSCDPTIRN 301
+ V + H N
Sbjct: 147 YRKVQQVIENHILKLFQSN 165
Score = 148 bits (376), Expect = 5e-43
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 10/154 (6%)
Query: 178 PLHLASRNGHS------LRRGPGA-NVQDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
+H + G LR+G N D G++ L A+ G E V LL A +I
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
+ + S L LA+ G DIV +LL ++N+ + T L A + H V L
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDV---DINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 291 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
L D T T +DLA G + +
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
Score = 121 bits (307), Expect = 5e-33
Identities = 46/182 (25%), Positives = 66/182 (36%), Gaps = 43/182 (23%)
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
S +H A G +D ++ L G ++ VN + T L A+ +G V LLE
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNL--VNKPDERGFTPLIWASAFGEIETVRFLLEWG 59
Query: 295 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 354
DP I E+ L LAS
Sbjct: 60 ADPHILAKERES----------------------------------------ALSLASTG 79
Query: 355 GHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
G+ +V LL+ +D+NI +G T L A ++ V+ LL GADL T +
Sbjct: 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM 139
Query: 414 DL 415
DL
Sbjct: 140 DL 141
Score = 118 bits (299), Expect = 7e-32
Identities = 37/153 (24%), Positives = 58/153 (37%), Gaps = 18/153 (11%)
Query: 18 LLEAARNGNIQVVEKILSQRAKR------SG--PL---AR----EIVELLLTNEASTNIV 62
+ + A G + +++ L + G PL + E V LL A +I+
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
+ S L LA+ G DIV +LL ++N+ + T L A + H V LL
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDV---DINIYDWNGGTPLLYAVRGNHVKCVEALL 122
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
D T T +DLA G + +
Sbjct: 123 ARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
Score = 63.2 bits (155), Expect = 6e-12
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 21/109 (19%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
++ L A+ G +V +L + +G PL R + VE LL
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNET 104
A G +P+ LA G + +V+ H +
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYRKVQQVIENHI---LKLFQSNLVPAD 170
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 155 bits (393), Expect = 1e-44
Identities = 55/249 (22%), Positives = 84/249 (33%), Gaps = 37/249 (14%)
Query: 66 GSSPLHLAAWTGNVDIVRVLL-CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 124
SPL LAA +V + LL G V+ ETALH AA Y + L+E
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGC---EVHQRGAMGETALHIAALYDNLEAAMVLMEA 59
Query: 125 -----SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPL 179
T +TAL +A + V L+ + +ARA ++F P
Sbjct: 60 APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA-RGASV---SARATGSVFHYRP- 114
Query: 180 HLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPL 239
+ G L AA G +EIV LL+ + A D+ G++ L
Sbjct: 115 ----------------HNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Query: 240 HLAAWTGNVDIVR----VLLCHGPSV---PNVNLMTKDNETALHCAAQYGHTPVVSQLLE 292
H+ N +LL + + T A G+ + L++
Sbjct: 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Query: 293 HSCDPTIRN 301
+
Sbjct: 219 KRKHIAAAH 227
Score = 147 bits (374), Expect = 7e-42
Identities = 48/263 (18%), Positives = 82/263 (31%), Gaps = 65/263 (24%)
Query: 177 SPLHLASRNGHS-------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEA--- 226
SPL LA++ G + + + G +ALH AAL + E +L+
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 227 --STNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV----------PNVNLMTKDNETA 274
+G + LH+A NV++VR LL G SV + + E
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 275 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY 334
L AA G +V L+EH D ++S T L + +
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNL-------- 176
Query: 335 NARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-------TALHEAALCG 387
LL ++++ T A + G
Sbjct: 177 ----------------------------LLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG 208
Query: 388 KLEVVKTLLEHGADLRIIDSKHN 410
+ + + L++ + H+
Sbjct: 209 NIVMFQHLMQKRKHIAAAHHHHH 231
Score = 135 bits (342), Expect = 3e-37
Identities = 40/208 (19%), Positives = 66/208 (31%), Gaps = 35/208 (16%)
Query: 202 GYSALHHAALNGH-KEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
S L AA + + +LL + G + LH+AA N++ VL+ P
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 261 VPNVNLMTKDN--ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLE 318
+ + ++ +TALH A + +V LL + R + E
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 319 TVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG- 377
PL A+ G +V L++ G D+ + + G
Sbjct: 123 H---------------------------PLSFAACVGSEEIVRLLIEHGADIRAQDSLGN 155
Query: 378 TALHEAALCGKLEVV----KTLLEHGAD 401
T LH L LL +
Sbjct: 156 TVLHILILQPNKTFACQMYNLLLSYDGG 183
Score = 122 bits (309), Expect = 1e-32
Identities = 43/248 (17%), Positives = 76/248 (30%), Gaps = 54/248 (21%)
Query: 18 LLEAARNGNIQVVEKIL-SQRAK-----RSG--PL-------AREIVELLLTNEA----- 57
LL AA+ ++Q + K+L + + G L E +L+
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 58 STNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV----------PNVNLMTKDNETALH 107
+G + LH+A NV++VR LL G SV + + E L
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126
Query: 108 CAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNA 167
AA G +V L+EH D ++S T L + + L+
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNL---LL----- 178
Query: 168 RAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAS 227
+ + V ++ G + A + G+ + + L+
Sbjct: 179 -----------SYDGGDHL-----KSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222
Query: 228 TNIVDTKG 235
Sbjct: 223 IAAAHHHH 230
Score = 106 bits (268), Expect = 8e-27
Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 29/163 (17%)
Query: 272 ETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHETALDLAAQYGRLETVDTL------V 324
E+ L AA+ +S+LL C+ R + ETAL +AA Y LE L +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 325 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG------- 377
P + Y + + LH+A N + ++V LL G V+ R
Sbjct: 64 VFEPMTSELYEGQ--------TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115
Query: 378 -------TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
L AA G E+V+ L+EHGAD+R DS NTVL
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 149 bits (380), Expect = 1e-43
Identities = 60/197 (30%), Positives = 85/197 (43%), Gaps = 41/197 (20%)
Query: 100 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 159
D L AA+ G V L+ + D ++ T L LAA G LE V+ L+ +
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KN- 69
Query: 160 GLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEI 217
GA+V D +G + L AAL GH EI
Sbjct: 70 ----------------------------------GADVNAVDHAGMTPLRLAALFGHLEI 95
Query: 218 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 277
VE+LL N A N D +G +PLHLAA G+++IV VLL +G +VN K +TA
Sbjct: 96 VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG---ADVNAQDKFGKTAFDI 152
Query: 278 AAQYGHTPVVSQLLEHS 294
+ G+ + L + +
Sbjct: 153 SIDNGNEDLAEILQKLN 169
Score = 147 bits (374), Expect = 1e-42
Identities = 58/209 (27%), Positives = 85/209 (40%), Gaps = 47/209 (22%)
Query: 194 GANV---QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDI 250
G++ S L AA G + V +L+ N A N D G +PLHLAA+ G+++I
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62
Query: 251 VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDL 310
V VLL +G +VN + T L AA +GH +V LL++ D + T
Sbjct: 63 VEVLLKNG---ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHT---- 115
Query: 311 AAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDV 370
PLHLA+ GH +V LL+ G DV
Sbjct: 116 ------------------------------------PLHLAAMFGHLEIVEVLLKNGADV 139
Query: 371 NIRTASG-TALHEAALCGKLEVVKTLLEH 398
N + G TA + G ++ + L +
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 144 bits (365), Expect = 2e-41
Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 9/153 (5%)
Query: 178 PLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
L A+R G + G N +D+SG++ LH AA NGH EIVE+LL N A N V
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
D G +PL LAA G+++IV VLL +G +VN + T LH AA +GH +V LL
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNG---ADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 292 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
++ D ++ +TA D++ G + + L
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 141 bits (358), Expect = 3e-40
Identities = 58/194 (29%), Positives = 80/194 (41%), Gaps = 41/194 (21%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
L AA G D VR+L+ +G +VN T LH AA GH +V LL++
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANG---ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
D + T L LAA +G LE V+ L+ +
Sbjct: 71 ADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KN--------------------------- 102
Query: 186 GHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAA 243
GA+V D G++ LH AA+ GH EIVE+LL N A N D G + ++
Sbjct: 103 --------GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154
Query: 244 WTGNVDIVRVLLCH 257
GN D+ +L
Sbjct: 155 DNGNEDLAEILQKL 168
Score = 113 bits (285), Expect = 7e-30
Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 18 LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTNEASTNIVD 63
LLEAAR G V +++ A SG PL A EIVE+LL N A N VD
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 64 TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 123
G +PL LAA G+++IV VLL +G +VN + T LH AA +GH +V LL+
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGA---DVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 124 HSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
+ D ++ +TA D++ G + + L
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 113 bits (285), Expect = 8e-30
Identities = 54/182 (29%), Positives = 72/182 (39%), Gaps = 44/182 (24%)
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
L AA G D VR+L+ +G +VN T LH AA GH +V LL++
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGA---DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 295 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 354
D + T PL LA+
Sbjct: 71 ADVNAVDHAGMT----------------------------------------PLRLAALF 90
Query: 355 GHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
GH +V LL+ G DVN G T LH AA+ G LE+V+ LL++GAD+ D T
Sbjct: 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Query: 414 DL 415
D+
Sbjct: 151 DI 152
Score = 93.2 bits (233), Expect = 1e-22
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 21/130 (16%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
+D L AA NG++++VE +L A +G PL A EIVE+LL N
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHT 115
A N D +G +PLHLAA G+++IV VLL +G +VN K +TA + G+
Sbjct: 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA---DVNAQDKFGKTAFDISIDNGNE 159
Query: 116 PVVSQLLEHS 125
+ L + +
Sbjct: 160 DLAEILQKLN 169
Score = 85.9 bits (214), Expect = 5e-20
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 41/146 (28%)
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
D L AA+ G V L+ + D ++ T
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWT---------------------- 49
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCG 387
PLHLA+ NGH +V LL+ G DVN +G T L AAL G
Sbjct: 50 ------------------PLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91
Query: 388 KLEVVKTLLEHGADLRIIDSKHNTVL 413
LE+V+ LL++GAD+ D + +T L
Sbjct: 92 HLEIVEVLLKNGADVNANDMEGHTPL 117
Score = 45.0 bits (108), Expect = 8e-06
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 367 GLDVNIRTAS--GTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
G + S G L EAA G+ + V+ L+ +GAD+ D+ T L
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPL 51
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 146 bits (372), Expect = 2e-42
Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 41/198 (20%)
Query: 98 MTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 157
M + L AA G ++ LL+++ + +N TAL + G E L+
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL-- 57
Query: 158 HPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHK 215
GAN +D +G++ +H AA G
Sbjct: 58 ----------------------------LR------GANPDLKDRTGFAVIHDAARAGFL 83
Query: 216 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 275
+ ++ LL +A NI D +G+ PLHLAA G++ +V L+ H S NV +TA
Sbjct: 84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--NVGHRNHKGDTAC 141
Query: 276 HCAAQYGHTPVVSQLLEH 293
A YG VVS + +
Sbjct: 142 DLARLYGRNEVVSLMQAN 159
Score = 143 bits (364), Expect = 3e-41
Identities = 53/201 (26%), Positives = 74/201 (36%), Gaps = 46/201 (22%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
+ L AA G E + LL N + N + G + L + GN +I R LL G
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA-- 61
Query: 262 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 321
N +L + +H AA+ G + LLE D I + G
Sbjct: 62 -NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED-----------NEGN----- 104
Query: 322 TLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAG-LDVNIRTASG-TA 379
PLHLA++ GH VV L++ +V R G TA
Sbjct: 105 ------------------------LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 380 LHEAALCGKLEVVKTLLEHGA 400
A L G+ EVV + +GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161
Score = 140 bits (355), Expect = 5e-40
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
Query: 178 PLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
L A+ G L+ N Q+ G +AL G+ EI LL A+ ++
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLK 66
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
D G + +H AA G +D ++ LL +VN+ + LH AA+ GH VV L+
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQ---ADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 292 EH-SCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
+H + + RN + +TA DLA YGR E V +
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 137 bits (347), Expect = 9e-39
Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 43/197 (21%)
Query: 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 124
+ L AA G+++ + LL + NVN TAL G+ + +LL
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNN---VNVNAQNGFGRTALQVMK-LGNPEIARRLLLR 59
Query: 125 SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR 184
+P +++ + AA+ G L+T+ TL+
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLL-----------------------EF---- 92
Query: 185 NGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEAST-NIVDTKGSSPLHL 241
A+V +D+ G LH AA GH +VE L+ + AS + KG + L
Sbjct: 93 ---------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143
Query: 242 AAWTGNVDIVRVLLCHG 258
A G ++V ++ +G
Sbjct: 144 ARLYGRNEVVSLMQANG 160
Score = 124 bits (313), Expect = 6e-34
Identities = 50/212 (23%), Positives = 72/212 (33%), Gaps = 62/212 (29%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
L AA G++ E + LL N + N + G + L + G
Sbjct: 9 LASAAARGDL-------------------EQLTSLLQNNVNVNAQNGFGRTALQVMKL-G 48
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET 137
N +I R LL G N +L + +H AA+ G + LLE D I ++
Sbjct: 49 NPEIARRLLLRGA---NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 138 ALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGA-- 195
L LAA+ G L V+ LV H A
Sbjct: 106 PLHLAAKEGHLRVVEFLV-----------------------KH-------------TASN 129
Query: 196 -NVQDSSGYSALHHAALNGHKEIVELLLTNEA 226
++ G +A A L G E+V L+ N A
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 101 bits (254), Expect = 1e-25
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 9/135 (6%)
Query: 267 MTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 326
M + L AA G ++ LL+++ + +N TAL + G E L+
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL-L 58
Query: 327 HPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAAL 385
+ + +H A+R G + LL+ DVNI G LH AA
Sbjct: 59 RGANPDLKDRTGF------AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 386 CGKLEVVKTLLEHGA 400
G L VV+ L++H A
Sbjct: 113 EGHLRVVEFLVKHTA 127
Score = 45.8 bits (110), Expect = 4e-06
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 377 GTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
G L AA G LE + +LL++ ++ + T L
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTAL 42
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 148 bits (375), Expect = 4e-42
Identities = 43/270 (15%), Positives = 76/270 (28%), Gaps = 52/270 (19%)
Query: 49 VELLLTNEASTNIVDTKGSSP---LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETA 105
+ +L S +P L AA TG +++V+ + + + ++ TA
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM---NDPSQPNEEGITA 57
Query: 106 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY 165
LH A + +V L+ + +S T L AA LV+
Sbjct: 58 LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH-------- 109
Query: 166 NARAQSTLFPASPLHLASRNGHSLRRGPGANV---QDSSGYSALHHAAL--NGHKEIVEL 220
GA + S G +A G+ +
Sbjct: 110 ----------------------------GAAIFATTLSDGATAFEKCDPYREGYADCATY 141
Query: 221 LLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ 280
L E S ++++ L + D + V ET AA
Sbjct: 142 LADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGES---VTVLRRDGPEETDWWWAAL 197
Query: 281 YGHTPVVSQLLEHSCDPTIRNSRHETALDL 310
+G V + P ++ R +
Sbjct: 198 HGQEGYVPRNYF-GLFPRVKPQRSKVKHHH 226
Score = 144 bits (366), Expect = 8e-41
Identities = 44/208 (21%), Positives = 65/208 (31%), Gaps = 20/208 (9%)
Query: 194 GANV-----QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNV 248
+ + L AAL G E+V+ + + + +G + LH A N
Sbjct: 8 AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANY 67
Query: 249 DIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETA 307
IV L+ G NVN T LHCAA T + L++H TA
Sbjct: 68 SIVDFLITAGA---NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATA 124
Query: 308 LDLAAQY--GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQ 365
+ Y G + L ++ S L S ++
Sbjct: 125 FEKCDPYREGYADCATYLAD-----VEQSMGLMNSGAV--YALWDYSAEFGD-ELSFREG 176
Query: 366 AGLDVNIRTASG-TALHEAALCGKLEVV 392
+ V R T AAL G+ V
Sbjct: 177 ESVTVLRRDGPEETDWWWAALHGQEGYV 204
Score = 139 bits (352), Expect = 1e-38
Identities = 51/244 (20%), Positives = 72/244 (29%), Gaps = 45/244 (18%)
Query: 82 VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDL 141
+R +L S + L AA G VV Q ++ DP+ N TAL
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 142 AAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QD 199
A VD L+ GANV D
Sbjct: 61 AICGANYSIVDFLITA------------------------------------GANVNSPD 84
Query: 200 SSGYSALHHAALNGHKEIVELLLTNEASTNIVDTK-GSSPLHLAAWT--GNVDIVRVLLC 256
S G++ LH AA I L+ + A+ G++ G D L
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD 144
Query: 257 HGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR 316
++ LM AL + +S S R+ ET AA +G+
Sbjct: 145 VEQ---SMGLMNSGAVYALWDYSA-EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQ 200
Query: 317 LETV 320
V
Sbjct: 201 EGYV 204
Score = 126 bits (319), Expect = 5e-34
Identities = 48/232 (20%), Positives = 70/232 (30%), Gaps = 38/232 (16%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
LL+AA G + E+V+ + + + +G + LH A
Sbjct: 25 LLDAALTGEL-------------------EVVQQAVKEMNDPSQPNEEGITALHNAICGA 65
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-E 136
N IV L+ G NVN T LHCAA T + L++H
Sbjct: 66 NYSIVDFLITAG---ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA 122
Query: 137 TALDLAAQY--GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH---SLRR 191
TA + Y G + L ++ S L S S R
Sbjct: 123 TAFEKCDPYREGYADCATYLAD-----VEQSMGLMNSGAV--YALWDYSAEFGDELSFRE 175
Query: 192 GPGANV--QDSSGYSALHHAALNGHKEIVE-LLLTNEASTNIVDTKGSSPLH 240
G V +D + AAL+G + V +K H
Sbjct: 176 GESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
Score = 100 bits (252), Expect = 1e-24
Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 11/167 (6%)
Query: 251 VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDL 310
+R +L S + L AA G VV Q ++ DP+ N TAL
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 311 AAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDV 370
A VD L+ + + ++ +PLH A+ + L+Q G +
Sbjct: 61 AICGANYSIVDFLIT-AGANVNSPDSHGW------TPLHCAASCNDTVICMALVQHGAAI 113
Query: 371 NIRTASG--TALHEAALC--GKLEVVKTLLEHGADLRIIDSKHNTVL 413
T S TA + G + L + + +++S L
Sbjct: 114 FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 145 bits (368), Expect = 1e-41
Identities = 38/209 (18%), Positives = 61/209 (29%), Gaps = 47/209 (22%)
Query: 195 ANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVL 254
+ G +GH A V ++ +P AA + + L
Sbjct: 7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQL 63
Query: 255 LCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY 314
L +V+ + ++ TAL A G V L E D R+ R
Sbjct: 64 L-EDR---DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR----------G 109
Query: 315 GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT 374
G + LH+A+ VV L++ G D+ +
Sbjct: 110 GL-----------------------------TALHMAAGYVRPEVVEALVELGADIEVED 140
Query: 375 ASG-TALHEAALCGKLEVVKTLLEHGADL 402
G TAL A K ++ G +
Sbjct: 141 ERGLTALELAREILKTTPKGNPMQFGRRI 169
Score = 140 bits (355), Expect = 1e-39
Identities = 43/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 176 ASPLHLASRNGHS----LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
A + ++GHS A+V S + AA ++ + LL + + V
Sbjct: 15 AMEYLIEWKDGHSPSWVPSSYIAADV-VSEYETPWWTAARKADEQALSQLLED-RDVDAV 72
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLM-TKDNETALHCAAQYGHTPVVSQL 290
D G + L A G+ VR+L G +++ + TALH AA Y VV L
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGA---DLDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Query: 291 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHL 350
+E D + + R TAL+LA + + +
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNP------------------------MQF 165
Query: 351 ASRNGHRSVVARLLQA 366
R G V+ L
Sbjct: 166 GRRIGLEKVINVLEGQ 181
Score = 134 bits (340), Expect = 1e-37
Identities = 42/240 (17%), Positives = 66/240 (27%), Gaps = 62/240 (25%)
Query: 55 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 114
N+ + +G+ + G+ +V + ET AA+
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA---ADVV---SEYETPWWTAARKAD 56
Query: 115 TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLF 174
+SQLL D + TAL A G + V L
Sbjct: 57 EQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLL-------------------- 95
Query: 175 PASPLHLASRNGHSLRRGPGANVQDS-SGYSALHHAALNGHKEIVELLLTNEASTNIVDT 233
G + +D G +ALH AA E+VE L+ A + D
Sbjct: 96 --------------AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 141
Query: 234 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 293
+G + L LA + G + G V++ L
Sbjct: 142 RGLTALELAREILKTTPKGNPMQFG--------------------RRIGLEKVINVLEGQ 181
Score = 110 bits (278), Expect = 8e-29
Identities = 41/194 (21%), Positives = 63/194 (32%), Gaps = 49/194 (25%)
Query: 224 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 283
N+ + +G+ + G+ +V + ET AA+
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA---DVV---SEYETPWWTAARKAD 56
Query: 284 TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLF 343
+SQLL D + T
Sbjct: 57 EQALSQLL-EDRDVDAVDENGRT------------------------------------- 78
Query: 344 PASPLHLASRNGHRSVVARLLQAGLDVNIRTASG--TALHEAALCGKLEVVKTLLEHGAD 401
L + G V L +AG D++ R G TALH AA + EVV+ L+E GAD
Sbjct: 79 ---ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 135
Query: 402 LRIIDSKHNTVLDL 415
+ + D + T L+L
Sbjct: 136 IEVEDERGLTALEL 149
Score = 110 bits (278), Expect = 9e-29
Identities = 38/219 (17%), Positives = 65/219 (29%), Gaps = 67/219 (30%)
Query: 18 LLEAARNGNIQVVEKILSQRA----KRSGPL---AR----EIVELLLTNEASTNIVDTKG 66
L ++G+ A + P AR + + LL + + VD G
Sbjct: 18 YLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLED-RDVDAVDENG 76
Query: 67 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLM-TKDNETALHCAAQYGHTPVVSQLLEHS 125
+ L A G+ VR+L G +++ + TALH AA Y VV L+E
Sbjct: 77 RTALLFVAGLGSDKCVRLLAEAGA---DLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 133
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
D + + R TAL+LA + +
Sbjct: 134 ADIEVEDERGLTALELAREILKTTPKGNP------------------------------- 162
Query: 186 GHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTN 224
+ G ++++ +L
Sbjct: 163 --------------------MQFGRRIGLEKVINVLEGQ 181
Score = 61.0 bits (149), Expect = 4e-11
Identities = 25/130 (19%), Positives = 39/130 (30%), Gaps = 39/130 (30%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRA------KRSG--PL---AR----EIVELLLT 54
D++ LL A G+ + V + A R G L A E+VE L+
Sbjct: 72 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 55 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 114
A + D +G + L LA + G + G
Sbjct: 132 LGADIEVEDERGLTALELAREILKTTPKGNPMQFG--------------------RRIGL 171
Query: 115 TPVVSQLLEH 124
V++ L
Sbjct: 172 EKVINVLEGQ 181
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 144 bits (365), Expect = 2e-41
Identities = 49/153 (32%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 178 PLHLASRNGHS------LRRGPGANV-QDSSGYSALHHAALNGHKEIVELLLTNEASTNI 230
L A+R G + G A D G S LH AA GH E+LL S +
Sbjct: 5 KLLEAARAGQDDEVRILMANG--APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
+PLH+AA G+ +IV VLL HG +VN TALH A ++ H VV L
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHG---ADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 291 LEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
+++ D ++ +TA D++ G + + L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 135 bits (344), Expect = 1e-38
Identities = 48/193 (24%), Positives = 68/193 (35%), Gaps = 46/193 (23%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDN--ETALHCAAQYGHTPVVSQLLE 123
L AA G D VR+L+ +G D + LH AAQYGH LL
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGA---PFT---TDWLGTSPLHLAAQYGHFSTTEVLLR 55
Query: 124 HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS 183
R T L +AA G V+ L+ H
Sbjct: 56 AGVSRDARTKVDRTPLHMAASEGHANIVEVLL-----------------------KH--- 89
Query: 184 RNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHL 241
GA+V +D +ALH A + H+E+VELL+ A + + +
Sbjct: 90 ----------GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDI 139
Query: 242 AAWTGNVDIVRVL 254
+ GN D+ +L
Sbjct: 140 SIDNGNEDLAEIL 152
Score = 135 bits (344), Expect = 2e-38
Identities = 45/194 (23%), Positives = 74/194 (38%), Gaps = 43/194 (22%)
Query: 101 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 160
D L AA+ G V L+ + T + + L LAAQYG T + L+R
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLR---- 55
Query: 161 LIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIV 218
G + + + LH AA GH IV
Sbjct: 56 --------------------------A------GVSRDARTKVDRTPLHMAASEGHANIV 83
Query: 219 ELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCA 278
E+LL + A N D + LH A + ++V +L+ +G +V+ +K +TA +
Sbjct: 84 EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG---ADVHTQSKFCKTAFDIS 140
Query: 279 AQYGHTPVVSQLLE 292
G+ + ++L+
Sbjct: 141 IDNGNEDLA-EILQ 153
Score = 132 bits (335), Expect = 3e-37
Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 45/195 (23%)
Query: 202 GYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV 261
L AA G + V +L+ N A D G+SPLHLAA G+ VLL G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV-- 58
Query: 262 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 321
+ + TK + T LH AA GH +V LL+H D ++ T
Sbjct: 59 -SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMT--------------- 102
Query: 322 TLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TAL 380
LH A+ + H+ VV L++ G DV+ ++ TA
Sbjct: 103 -------------------------ALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 137
Query: 381 HEAALCGKLEVVKTL 395
+ G ++ + L
Sbjct: 138 DISIDNGNEDLAEIL 152
Score = 115 bits (291), Expect = 6e-31
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 18 LLEAARNGNIQVVEKILSQRA----KRSG--PL---AR----EIVELLLTNEASTNIVDT 64
LLEAAR G V +++ A G PL A+ E+LL S +
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65
Query: 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 124
+PLH+AA G+ +IV VLL HG +VN TALH A ++ H VV L+++
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGA---DVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 125 SCDPTIRNSRHETALDLAAQYGRLETVDTL 154
D ++ +TA D++ G + + L
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 100 bits (253), Expect = 2e-25
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 13/149 (8%)
Query: 270 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 329
D L AA+ G V L+ + T + + L LAAQYG T + L+R
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLR-AGV 58
Query: 330 LIQAYNARAQS--TLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALC 386
+AR + T PLH+A+ GH ++V LL+ G DVN + TALH A
Sbjct: 59 SR---DARTKVDRT-----PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110
Query: 387 GKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
EVV+ L+++GAD+ T D+
Sbjct: 111 NHQEVVELLIKYGADVHTQSKFCKTAFDI 139
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 149 bits (378), Expect = 4e-41
Identities = 50/307 (16%), Positives = 101/307 (32%), Gaps = 56/307 (18%)
Query: 15 DQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAA 74
+ AA G ++ + LLLT++ ++ + LAA
Sbjct: 93 EVICFVAAITGCSSALD----------------TLCLLLTSDEIVKVIQAENYQAFRLAA 136
Query: 75 WTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN-- 132
G++ ++ L P+ + ++ +N A AA+ GH V+++L E +
Sbjct: 137 ENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 195
Query: 133 SRHETALDLAA-QYGRLETVDTLVRT---------------HPGLIQAYNARAQSTLFPA 176
+ + A AA G ++ L+ +
Sbjct: 196 AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH 255
Query: 177 SPLHLASRNGHS--LRRGPGANVQDSSGYSALHHAALNGHKEIVELL--------LTNEA 226
L++ +G + + G+ L + + +++ + + A
Sbjct: 256 DAFKLSNPDGVFDLVTKSECLQ-----GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA 310
Query: 227 STNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPV 286
T + + L LA GN +LL S+P+V +TK N + G +
Sbjct: 311 PTATIPGDANELLRLALRLGNQGACALLL----SIPSVLALTKAN--NYYINETGGRLDL 364
Query: 287 VSQLLEH 293
+ LEH
Sbjct: 365 RAVALEH 371
Score = 148 bits (375), Expect = 1e-40
Identities = 62/386 (16%), Positives = 114/386 (29%), Gaps = 74/386 (19%)
Query: 22 ARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGN--- 78
N++ V ++L A+++ + + +AA TG
Sbjct: 55 PGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEV-------ICFVAAITGCSSA 107
Query: 79 VDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE-- 136
+D + +LL V ++ +N A AA+ GH V+++L E + + + E
Sbjct: 108 LDTLCLLLTSDE---IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY 164
Query: 137 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196
A LAA+ G L ++ L P A
Sbjct: 165 HAFRLAAENGHLHVLNRLCELAPTEA-------------------------------TAM 193
Query: 197 VQDSSGYSALHHAAL-NGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
+ + Y A AA+ GH ++ LL + + +
Sbjct: 194 I-QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEK-------YVNPFIA 245
Query: 256 CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG 315
H + K+ A + G +V++ L +
Sbjct: 246 RHVNRL-------KEMHDAFKLSNPDGVFDLVTKSECLQG---------FYMLRNLIRRN 289
Query: 316 RLETVDTL-VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRT 374
+D + I+A A L LA R G++ A LL + +
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLAL-- 347
Query: 375 ASGTALHEAALCGKLEVVKTLLEHGA 400
+ G+L++ LEH
Sbjct: 348 TKANNYYINETGGRLDLRAVALEHHH 373
Score = 137 bits (347), Expect = 1e-36
Identities = 41/262 (15%), Positives = 71/262 (27%), Gaps = 40/262 (15%)
Query: 178 PLHLASRNGHS---------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAST 228
+A+ G S L V + Y A AA NGH ++ L +
Sbjct: 95 ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 154
Query: 229 NIVD--TKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPV 286
+ + LAA G++ ++ L P+ + ++ A GH V
Sbjct: 155 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 214
Query: 287 VSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNA---------- 336
++ LL+ A +YG + R L + ++A
Sbjct: 215 INFLLDCPVMLAY-------AEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVF 267
Query: 337 ---RAQSTLFPASPLHLASRNGHRSVV--------ARLLQAGLDVNIRTASG-TALHEAA 384
L L R ++ ++A L A
Sbjct: 268 DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 327
Query: 385 LCGKLEVVKTLLEHGADLRIID 406
G LL + L +
Sbjct: 328 RLGNQGACALLLSIPSVLALTK 349
Score = 113 bits (285), Expect = 4e-28
Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 27/232 (11%)
Query: 195 ANVQDSSGYSALHHAALNGHK---EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV 251
A+ + AA+ G + + LLLT++ ++ + LAA G++ ++
Sbjct: 85 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL 144
Query: 252 RVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN--SRHETALD 309
L P+ + ++ +N A AA+ GH V+++L E + + + A
Sbjct: 145 NRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 203
Query: 310 LAA-QYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGL 368
AA G ++ L+ L A G + V + +
Sbjct: 204 WAAVGRGHHNVINFLLDCPVMLAYA--------------EIHEFEYGEKYVNPFIARHV- 248
Query: 369 DVNIRTASGTALHEAALCGKLEVVKTLLE---HGADLRIIDSKHNTVLDLLK 417
N A + G ++V +I +LD ++
Sbjct: 249 --NRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIR 298
Score = 64.2 bits (156), Expect = 2e-11
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 19/134 (14%)
Query: 4 LQCVVFSVMGKDQDLLEAARNGNIQVVEK--------ILSQRAKRSGPLAREIVELLLT- 54
+ V + + +G +V K +L +R+ + + + LL+
Sbjct: 244 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 303
Query: 55 ----NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAA 110
A T + + L LA GN +LL S+P+V +TK N +
Sbjct: 304 PGIKALAPTATIPGDANELLRLALRLGNQGACALLL----SIPSVLALTKAN--NYYINE 357
Query: 111 QYGHTPVVSQLLEH 124
G + + LEH
Sbjct: 358 TGGRLDLRAVALEH 371
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 145 bits (368), Expect = 6e-41
Identities = 46/234 (19%), Positives = 72/234 (30%), Gaps = 52/234 (22%)
Query: 196 NVQDSSGYSALHHAALN---GHKEIVELLL-----------TNEASTNIVDTKGSSPLHL 241
+ S+G + L A LN G + LL A +G S LH+
Sbjct: 37 YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHI 96
Query: 242 AAWTGNVDIVRVLLCHGPSV----------PNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
A ++ V++L+ +G V + E L AA VV+ LL
Sbjct: 97 AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156
Query: 292 EH---SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPL 348
E+ +S T L ++ L
Sbjct: 157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENS------------------------AL 192
Query: 349 HLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGAD 401
+ +G + ARL I G T L AA GK+E+ + +L+
Sbjct: 193 VIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246
Score = 136 bits (344), Expect = 2e-37
Identities = 49/272 (18%), Positives = 77/272 (28%), Gaps = 50/272 (18%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWT- 76
L G + + +L S L + G + L A
Sbjct: 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSA-----------YTEGSTGKTCLMKAVLNL 54
Query: 77 --GNVDIVRVLLCHGPSVP--------NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSC 126
G + LL +ALH A + V L+E+
Sbjct: 55 QDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114
Query: 127 DPTIRNSRH-------------ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTL 173
D +R E L LAA + + V L+ A + A +
Sbjct: 115 DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN--PHQPA-SLEATDS- 170
Query: 174 FPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDT 233
+ LH +S SAL +G ++ L I +
Sbjct: 171 LGNTVLHALVMIAD-----------NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219
Query: 234 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVN 265
+G +PL LAA G ++I R +L S +
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHILQREFSGAAAH 251
Score = 132 bits (333), Expect = 7e-36
Identities = 51/279 (18%), Positives = 83/279 (29%), Gaps = 63/279 (22%)
Query: 69 PLHLAAWTGNVDIVRVL---LCHGPSVPNVNLMTKDN--ETALHCAA---QYGHTPVVSQ 120
L G + + L L + T+ + +T L A Q G +
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64
Query: 121 LLEHSCDP-----------TIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARA 169
LL+ D T + +AL +A + L+ V LV + + RA
Sbjct: 65 LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV----HLRA 120
Query: 170 QSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTN---EA 226
F G L AA ++V LL N A
Sbjct: 121 CGRFFQKHQ-----------------GTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA 163
Query: 227 STNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPV 286
S D+ G++ LH + +AL G +
Sbjct: 164 SLEATDSLGNTVLHALV--------------------MIADNSPENSALVIHMYDGLLQM 203
Query: 287 VSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
++L I N + T L LAA+ G++E +++
Sbjct: 204 GARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242
Score = 126 bits (318), Expect = 1e-33
Identities = 53/294 (18%), Positives = 83/294 (28%), Gaps = 71/294 (24%)
Query: 102 NETALHCAAQYGHTPVVSQLLEH--------SCDPTIRNSRHETALDLAA---QYGRLET 150
+ L G ++ LLE+ + S +T L A Q G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 151 VDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAA 210
+ L++ + G+SALH A
Sbjct: 62 IMPLLQ-----------------------IDKDSGNPKPLVNAQCTDEFYQGHSALHIAI 98
Query: 211 LNGHKEIVELLLTNEASTNIVDTK-------------GSSPLHLAAWTGNVDIVRVLLCH 257
+ V+LL+ N A ++ G PL LAA T D+V LL +
Sbjct: 99 EKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158
Query: 258 GPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRL 317
++ T LH NS +AL + G L
Sbjct: 159 PHQPASLEATDSLGNTVLHALVMIAD-----------------NSPENSALVIHMYDGLL 201
Query: 318 ETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVN 371
+ L L + N + + PL LA++ G + +LQ
Sbjct: 202 QMGARLCP-TVQLEEISNHQGLT------PLKLAAKEGKIEIFRHILQREFSGA 248
Score = 88.7 bits (220), Expect = 4e-20
Identities = 40/201 (19%), Positives = 56/201 (27%), Gaps = 54/201 (26%)
Query: 238 PLHLAAWTGNVDIVRVL---LCHGPSVPNVNLMTKDN--ETALHCAA---QYGHTPVVSQ 289
L G + + L L + T+ + +T L A Q G +
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64
Query: 290 LLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH 349
LL+ D G S LH
Sbjct: 65 LLQIDKDSGNPKPLVNAQCTDEFYQGH-----------------------------SALH 95
Query: 350 LASRNGHRSVVARLLQAGLDVNIRTASG--------------TALHEAALCGKLEVVKTL 395
+A V L++ G DV++R L AA + +VV L
Sbjct: 96 IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155
Query: 396 LEHG---ADLRIIDSKHNTVL 413
LE+ A L DS NTVL
Sbjct: 156 LENPHQPASLEATDSLGNTVL 176
Score = 52.5 bits (126), Expect = 7e-08
Identities = 28/161 (17%), Positives = 43/161 (26%), Gaps = 41/161 (25%)
Query: 271 NETALHCAAQYGHTPVVSQLLEH--------SCDPTIRNSRHETALDLAA---QYGRLET 319
+ L G ++ LLE+ + S +T L A Q G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 320 VDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-T 378
+ L L + +G G +
Sbjct: 62 IMPL------------------------LQIDKDSG-----NPKPLVNAQCTDEFYQGHS 92
Query: 379 ALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDLLKQF 419
ALH A L+ VK L+E+GAD+ + F
Sbjct: 93 ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCF 133
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 139 bits (353), Expect = 8e-40
Identities = 47/193 (24%), Positives = 70/193 (36%), Gaps = 40/193 (20%)
Query: 102 NETALHCAAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 160
L AA G V +LL P N +TAL + +G L
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALEL------ 54
Query: 161 LIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVEL 220
L++G NVQD+SG S +H AA G + +++
Sbjct: 55 ----------------------------LKQGASPNVQDTSGTSPVHDAARTGFLDTLKV 86
Query: 221 LLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQ 280
L+ + A N+ D G+ P+HLA G+ +V L +++ T L A Q
Sbjct: 87 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES----DLHRRDARGLTPLELALQ 142
Query: 281 YGHTPVVSQLLEH 293
G +V L H
Sbjct: 143 RGAQDLVDILQGH 155
Score = 133 bits (338), Expect = 1e-37
Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 47/199 (23%)
Query: 202 GYSALHHAALNGH-KEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
L AA G +E+ LL + ++ G + L + + G+ I LL G
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGA- 59
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 320
+ N+ + +H AA+ G + L+EH D + + G
Sbjct: 60 --SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD-----------GTGA---- 102
Query: 321 DTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TA 379
P+HLA + GH +VV L A D++ R A G T
Sbjct: 103 -------------------------LPIHLAVQEGHTAVV-SFLAAESDLHRRDARGLTP 136
Query: 380 LHEAALCGKLEVVKTLLEH 398
L A G ++V L H
Sbjct: 137 LELALQRGAQDLVDILQGH 155
Score = 133 bits (337), Expect = 2e-37
Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 38/193 (19%)
Query: 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 124
+ L AA G+V VR LL + + + + +TAL +G T + +LL+
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELV--HPDALNRFGKTALQVMM-FGSTAIALELLKQ 57
Query: 125 SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR 184
P ++++ + + AA+ G L+T+ L
Sbjct: 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVL------------------------------ 87
Query: 185 NGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAW 244
+ G NV D +G +H A GH +V L E+ + D +G +PL LA
Sbjct: 88 ----VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQ 142
Query: 245 TGNVDIVRVLLCH 257
G D+V +L H
Sbjct: 143 RGAQDLVDILQGH 155
Score = 122 bits (309), Expect = 2e-33
Identities = 37/207 (17%), Positives = 67/207 (32%), Gaps = 61/207 (29%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
L AA G++Q V LL + ++ G + L + + G
Sbjct: 6 LSGAAARGDVQEVR------------------RLLHRELVHPDALNRFGKTALQVMMF-G 46
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET 137
+ I LL G + N+ + +H AA+ G + L+EH D + +
Sbjct: 47 STAIALELLKQGA---SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL 103
Query: 138 ALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV 197
+ LA Q G V L +++
Sbjct: 104 PIHLAVQEGHTAVVSFLAA-------------------------------------ESDL 126
Query: 198 --QDSSGYSALHHAALNGHKEIVELLL 222
+D+ G + L A G +++V++L
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 92.1 bits (230), Expect = 2e-22
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 19 LEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTNEASTNIVDT 64
L+ G+ + ++L Q A SG P+ AR + +++L+ + A N+ D
Sbjct: 40 LQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 99
Query: 65 KGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 124
G+ P+HLA G+ +V L +++ T L A Q G +V L H
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLAAES----DLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 78.2 bits (194), Expect = 2e-17
Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 43/145 (29%)
Query: 271 NETALHCAAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 329
L AA G V +LL P N +T
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKT----------------------- 38
Query: 330 LIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGK 388
L + G ++ LL+ G N++ SG + +H+AA G
Sbjct: 39 -----------------ALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80
Query: 389 LEVVKTLLEHGADLRIIDSKHNTVL 413
L+ +K L+EHGAD+ + D +
Sbjct: 81 LDTLKVLVEHGADVNVPDGTGALPI 105
Score = 46.6 bits (112), Expect = 2e-06
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 24/79 (30%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSP 69
D + A + G+ +V L E+ + D +G +P
Sbjct: 97 PDGTGALPIHLAVQEGHT-------------------AVVSFLA-AESDLHRRDARGLTP 136
Query: 70 LHLAAWTGNVDIVRVLLCH 88
L LA G D+V +L H
Sbjct: 137 LELALQRGAQDLVDILQGH 155
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 139 bits (353), Expect = 1e-39
Identities = 51/200 (25%), Positives = 71/200 (35%), Gaps = 43/200 (21%)
Query: 62 VDTKGSSPLHLAAWTGNVDIVRVLL-CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQ 120
+++ L AA G+V+ V+ L N + T LH AA Y VV
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV---NCRDIEGRQSTPLHFAAGYNRVSVVEY 60
Query: 121 LLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH 180
LL+H D ++ L A YG E + LV H
Sbjct: 61 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-----------------------KH 97
Query: 181 LASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSP 238
GA V D ++ LH AA G EI +LLL + A + G++P
Sbjct: 98 -------------GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 144
Query: 239 LHLAAWTGNVDIVRVLLCHG 258
L L G+ DI +L
Sbjct: 145 LDLVKD-GDTDIQDLLRGDA 163
Score = 138 bits (351), Expect = 2e-39
Identities = 52/203 (25%), Positives = 74/203 (36%), Gaps = 46/203 (22%)
Query: 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLAAQYGRLETVD 152
N + + L AA+ G V +L S + R T L AA Y R+ V+
Sbjct: 3 MGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE 59
Query: 153 TLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAA 210
L+ H GA+V +D G LH+A
Sbjct: 60 YLL-QH-----------------------------------GADVHAKDKGGLVPLHNAC 83
Query: 211 LNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKD 270
GH E+ ELL+ + A N+ D +PLH AA G +I ++LL HG + +D
Sbjct: 84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG---ADPTKKNRD 140
Query: 271 NETALHCAAQYGHTPVVSQLLEH 293
T L G T + L
Sbjct: 141 GNTPLDLVK-DGDTDIQDLLRGD 162
Score = 122 bits (310), Expect = 2e-33
Identities = 44/172 (25%), Positives = 64/172 (37%), Gaps = 13/172 (7%)
Query: 231 VDTKGSSPLHLAAWTGNVDIVRVLL-CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQ 289
+++ L AA G+V+ V+ L N + T LH AA Y VV
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV---NCRDIEGRQSTPLHFAAGYNRVSVVEY 60
Query: 290 LLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH 349
LL+H D ++ L A YG E + LV H ++ + +PLH
Sbjct: 61 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKF------TPLH 113
Query: 350 LASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGA 400
A+ G + LLQ G D + G T L G ++ L A
Sbjct: 114 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Score = 109 bits (275), Expect = 2e-28
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 19/153 (12%)
Query: 18 LLEAARNGNIQVVEKILSQRA--------KRSGPL---AR----EIVELLLTNEASTNIV 62
LLEAA+ G+++ V+K+ + ++ ++S PL A +VE LL + A +
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
D G PLH A G+ ++ +L+ HG VN+ T LH AA G + LL
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVKHGA---VVNVADLWKFTPLHEAAAKGKYEICKLLL 128
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
+H DPT +N T LDL G + D L
Sbjct: 129 QHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLR 160
Score = 83.2 bits (207), Expect = 4e-19
Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 301 NSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVV 360
NS + L AA+ G +ETV L + R + PLH A+ SVV
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST------PLHFAAGYNRVSVV 58
Query: 361 ARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
LLQ G DV+ + G LH A G EV + L++HGA + + D T L
Sbjct: 59 EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL 112
Score = 80.1 bits (199), Expect = 5e-18
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 21 AARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTNEASTNIVDTKG 66
AA + VVE +L A + G PL E+ ELL+ + A N+ D
Sbjct: 49 AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK 108
Query: 67 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 124
+PLH AA G +I ++LL HG + +D T L G T + L
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQHG---ADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGD 162
Score = 52.8 bits (128), Expect = 2e-08
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 19/94 (20%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
KD+ L A G+ +V E ++ A PL A EI +LLL +
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 89
A + G++PL L G+ DI +L
Sbjct: 131 GADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 136 bits (346), Expect = 5e-39
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 194 GANV-QDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
G + + G + LH A++ G VE LL N + N+ D G +PLH A G++ +V
Sbjct: 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 253 VLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAA 312
+LL H VN N++ LH AA+ GH +V LL + N +D
Sbjct: 61 LLLQHK---ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117
Query: 313 QYGRLETVDTLVR 325
+ +
Sbjct: 118 DESMKSLLLLPEK 130
Score = 124 bits (313), Expect = 3e-34
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Query: 178 PLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
LH+AS G L+ G NV+D +G++ LH A +GH ++VELLL ++A N
Sbjct: 13 LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
+ SPLH AA G+VDIV++LL +G + N + + ++
Sbjct: 73 GYQNDSPLHDAAKNGHVDIVKLLLSYG---ASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129
Query: 292 EH 293
++
Sbjct: 130 KN 131
Score = 117 bits (295), Expect = 1e-31
Identities = 41/161 (25%), Positives = 60/161 (37%), Gaps = 38/161 (23%)
Query: 100 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 159
ET LH A+ G P V LL++ DP +++ T L A +G L+ V+ L+ H
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QH- 65
Query: 160 GLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEI 217
A V S LH AA NGH +I
Sbjct: 66 ----------------------------------KALVNTTGYQNDSPLHDAAKNGHVDI 91
Query: 218 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
V+LLL+ AS N V+ G P+ ++ + +
Sbjct: 92 VKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132
Score = 114 bits (287), Expect = 1e-30
Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 37/167 (22%)
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
+ +G + LH+A+ G++ V LL +G + N+ T LH A +GH VV LL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNG---SDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 182
+H ++++ L AA+ G ++ V L
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL---------------------------- 95
Query: 183 SRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTN 229
L G N + G + + K ++ L NE+S+
Sbjct: 96 ------LSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSA 136
Score = 111 bits (280), Expect = 2e-29
Identities = 34/171 (19%), Positives = 59/171 (34%), Gaps = 44/171 (25%)
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
+ +G + LH+A+ G++ V LL +G + N+ T LH A +GH VV LL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGS---DPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 292 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 351
+H ++++ PLH A
Sbjct: 64 QHKALVNTTGYQNDS----------------------------------------PLHDA 83
Query: 352 SRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGAD 401
++NGH +V LL G N G + ++ ++ +
Sbjct: 84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 108 bits (272), Expect = 2e-28
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
VE LL N + N+ D G +PLH A G++ +V +LL H VN N++ L
Sbjct: 24 PSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA---LVNTTGYQNDSPL 80
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
H AA+ GH +V LL + N +D + +
Sbjct: 81 HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130
Score = 94.4 bits (236), Expect = 2e-23
Identities = 38/148 (25%), Positives = 54/148 (36%), Gaps = 41/148 (27%)
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 328
ET LH A+ G P V LL++ DP +++ T
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWT---------------------- 45
Query: 329 GLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCG 387
PLH A +GH VV LLQ VN + LH+AA G
Sbjct: 46 ------------------PLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNG 87
Query: 388 KLEVVKTLLEHGADLRIIDSKHNTVLDL 415
+++VK LL +GA ++ +D
Sbjct: 88 HVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Score = 57.8 bits (141), Expect = 1e-10
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 18/94 (19%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
KD L EA +G+++VVE +L +A PL A+ +IV+LLL+
Sbjct: 39 KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 89
AS N V+ G P+ ++ + +
Sbjct: 99 GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132
Score = 42.8 bits (102), Expect = 2e-05
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 367 GLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
G+D G T LH A++ G + V+ LL++G+D + D T L
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPL 47
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 136 bits (345), Expect = 1e-38
Identities = 34/168 (20%), Positives = 55/168 (32%), Gaps = 17/168 (10%)
Query: 194 GANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRV 253
A L AA G E V LL A+ N ++ G P+ + G+ + +
Sbjct: 4 AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAEL 62
Query: 254 LLCHGPSVPNVNLMTKDNET-ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAA 312
LL HG N T +H AA+ G + L +R++ +DLA
Sbjct: 63 LLLHGA---EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE 119
Query: 313 QYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVV 360
+ G + L G + N + + G +
Sbjct: 120 ELGHRDVARYLRA-AAGGTRGSN-----------HARIDAAEGPSDIP 155
Score = 129 bits (327), Expect = 4e-36
Identities = 33/151 (21%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 178 PLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
L A+ G L G N +S G + G + ELLL + A N
Sbjct: 15 WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA 73
Query: 232 DTKGS-SPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D P+H AA G +D + VL G +++ + A + GH V L
Sbjct: 74 DPATLTRPVHDAAREGFLDTLVVLHRAGA---RLDVRDAWGRLPVDLAEELGHRDVARYL 130
Query: 291 LEHSCDPTIRNSRHETALDLAAQYGRLETVD 321
+ + A G + D
Sbjct: 131 RAAAGGTRGS-----NHARIDAAEGPSDIPD 156
Score = 125 bits (316), Expect = 2e-34
Identities = 34/190 (17%), Positives = 52/190 (27%), Gaps = 44/190 (23%)
Query: 99 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 158
+ + L AA G V LLE +P NS + + G + L
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELL---- 63
Query: 159 PGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGY-SALHHAALNGHKEI 217
L G N D + +H AA G +
Sbjct: 64 ------------------------------LLHGAEPNCADPATLTRPVHDAAREGFLDT 93
Query: 218 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHC 277
+ +L A ++ D G P+ LA G+ D+ R L
Sbjct: 94 LVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT--------RGSNHARI 145
Query: 278 AAQYGHTPVV 287
A G + +
Sbjct: 146 DAAEGPSDIP 155
Score = 124 bits (315), Expect = 2e-34
Identities = 36/191 (18%), Positives = 54/191 (28%), Gaps = 44/191 (23%)
Query: 225 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHT 284
E + + L AA G V+ VR LL G N N + G
Sbjct: 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGA---NPNAPNSYGRRPIQVMMM-GSA 57
Query: 285 PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFP 344
V LL H +P + T
Sbjct: 58 RVAELLLLHGAEPNCADPATLT-------------------------------------- 79
Query: 345 ASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLR 403
P+H A+R G + L +AG +++R A G + A G +V + L R
Sbjct: 80 -RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR 138
Query: 404 IIDSKHNTVLD 414
+ +
Sbjct: 139 GSNHARIDAAE 149
Score = 124 bits (314), Expect = 3e-34
Identities = 42/197 (21%), Positives = 62/197 (31%), Gaps = 44/197 (22%)
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHT 115
E + + L AA G V+ VR LL G N N + G
Sbjct: 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLEAG---ANPNAPNSYGRRPIQVMMM-GSA 57
Query: 116 PVVSQLLEHSCDPTIRNSRHET-ALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLF 174
V LL H +P + T + AA+ G L+T+ L
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVL-------------------- 97
Query: 175 PASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTK 234
R G +V+D+ G + A GH+++ L T+
Sbjct: 98 --------------HRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG-----GTR 138
Query: 235 GSSPLHLAAWTGNVDIV 251
GS+ + A G DI
Sbjct: 139 GSNHARIDAAEGPSDIP 155
Score = 109 bits (274), Expect = 1e-28
Identities = 34/203 (16%), Positives = 56/203 (27%), Gaps = 63/203 (31%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
L AA G + E V LL A+ N ++ G P+ + G
Sbjct: 16 LATAAARGRV-------------------EEVRALLEAGANPNAPNSYGRRPIQVMMM-G 55
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNET-ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136
+ + +LL HG N T +H AA+ G + L +R++
Sbjct: 56 SARVAELLLLHGA---EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 112
Query: 137 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGAN 196
+DLA + G + L
Sbjct: 113 LPVDLAEELGHRDVARYLRAA------------------------------------AGG 136
Query: 197 VQDSSGYSALHHAALNGHKEIVE 219
+ G + A G +I +
Sbjct: 137 TR---GSNHARIDAAEGPSDIPD 156
Score = 90.2 bits (225), Expect = 1e-21
Identities = 30/150 (20%), Positives = 44/150 (29%), Gaps = 43/150 (28%)
Query: 268 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 327
+ + L AA G V LLE +P NS
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRR--------------------- 47
Query: 328 PGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG--TALHEAAL 385
P+ + G V LL G + N + +H+AA
Sbjct: 48 -------------------PIQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDAAR 87
Query: 386 CGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
G L+ + L GA L + D+ +DL
Sbjct: 88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 132 bits (335), Expect = 2e-37
Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 5/134 (3%)
Query: 192 GPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIV 251
PG ++ S + L AA G E V LL A N ++ G P+ + G+ +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60
Query: 252 RVLLCHGPSVPNVNLMTKDNET-ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDL 310
+LL HG N T +H AA+ G + L + ++ +DL
Sbjct: 61 ELLLLHG---AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117
Query: 311 AAQYGRLETVDTLV 324
A + G + L
Sbjct: 118 AEEQGHRDIARYLH 131
Score = 124 bits (315), Expect = 2e-34
Identities = 32/177 (18%), Positives = 54/177 (30%), Gaps = 44/177 (24%)
Query: 226 ASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTP 285
+++ + L AA G V+ VR LL G + N + + + G
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA---DPNALNRFGRRPIQVMMM-GSAQ 58
Query: 286 VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA 345
V LL H +P + T
Sbjct: 59 VAELLLLHGAEPNCADPATLT--------------------------------------- 79
Query: 346 SPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGAD 401
P+H A+R G + L +AG +++ A G + A G ++ + L D
Sbjct: 80 RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 120 bits (303), Expect = 8e-33
Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 11/123 (8%)
Query: 178 PLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
L A+ G L G N + G + G ++ ELLL + A N
Sbjct: 15 GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCA 73
Query: 232 DTKGS-SPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
D P+H AA G +D + VL G +++ + A + GH + L
Sbjct: 74 DPATLTRPVHDAAREGFLDTLVVLHRAGA---RLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Query: 291 LEH 293
Sbjct: 131 HAA 133
Score = 118 bits (298), Expect = 4e-32
Identities = 35/167 (20%), Positives = 54/167 (32%), Gaps = 36/167 (21%)
Query: 93 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 152
P ++++ ++ L AA G V QLLE DP N + + G + +
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAE 61
Query: 153 TLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGY-SALHHAAL 211
L L G N D + +H AA
Sbjct: 62 LL----------------------------------LLHGAEPNCADPATLTRPVHDAAR 87
Query: 212 NGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
G + + +L A ++ D G P+ LA G+ DI R L
Sbjct: 88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134
Score = 102 bits (257), Expect = 3e-26
Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 24/139 (17%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
L AA G + E V LL A N ++ G P+ + G
Sbjct: 16 LATAAARGQV-------------------ETVRQLLEAGADPNALNRFGRRPIQVMMM-G 55
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNET-ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE 136
+ + +LL HG N T +H AA+ G + L + ++
Sbjct: 56 SAQVAELLLLHGA---EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR 112
Query: 137 TALDLAAQYGRLETVDTLV 155
+DLA + G + L
Sbjct: 113 LPVDLAEEQGHRDIARYLH 131
Score = 93.7 bits (234), Expect = 4e-23
Identities = 32/156 (20%), Positives = 49/156 (31%), Gaps = 43/156 (27%)
Query: 262 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 321
P ++++ ++ L AA G V QLLE DP N
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRR--------------- 47
Query: 322 TLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG--TA 379
P+ + G V LL G + N +
Sbjct: 48 -------------------------PIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRP 81
Query: 380 LHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
+H+AA G L+ + L GA L + D+ +DL
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117
Score = 60.5 bits (148), Expect = 2e-11
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 19 LEAARNGNIQVVEKILSQRAK--------RSGPL---AR----EIVELLLTNEASTNIVD 63
++ G+ QV E +L A+ + P+ AR + + +L A ++ D
Sbjct: 49 IQVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD 108
Query: 64 TKGSSPLHLAAWTGNVDIVRVLLCHG 89
G P+ LA G+ DI R L
Sbjct: 109 AWGRLPVDLAEEQGHRDIARYLHAAT 134
Score = 52.8 bits (128), Expect = 9e-09
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 366 AGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
+++ S L AA G++E V+ LLE GAD ++ +
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 136 bits (345), Expect = 2e-37
Identities = 51/292 (17%), Positives = 91/292 (31%), Gaps = 63/292 (21%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTK-GSSPLHLAAWT 76
+ +A N Q +E +L ++ + D + G + L A
Sbjct: 17 IFDAVAQSNCQELESLL------------PFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64
Query: 77 ---GNVDIVRVLLCHG------PSVPNVNLMTKDN--ETALHCAAQYGHTPVVSQLLEHS 125
G D + +LL N + +TALH A + + +V+ L+E+
Sbjct: 65 LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124
Query: 126 CDPTIRNSRH--------------ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQS 171
D + E L LAA +L V L++ A + A+
Sbjct: 125 ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN--SWQPA-DISARD 181
Query: 172 TLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
+ + LH ++ + + N + L I
Sbjct: 182 S-VGNTVLHALVEVAD-----------NTVDNTKFVTSMYNEILILGAKLHPTLKLEEIT 229
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 283
+ KG +PL LAA +G + ++ +L H AA + H
Sbjct: 230 NRKGLTPLALAASSGKIGVLAYILQRE----------IHEPECRHAAAHHHH 271
Score = 135 bits (342), Expect = 7e-37
Identities = 50/294 (17%), Positives = 83/294 (28%), Gaps = 62/294 (21%)
Query: 57 ASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP--NVNLMTKDN---ETALHCA-- 109
A + A N + LL + KD +T L A
Sbjct: 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63
Query: 110 -AQYGHTPVVSQLLEHSCD-----------PTIRNSRHETALDLAAQYGRLETVDTLVRT 157
G ++ LL+ + T + +TAL +A + + V LV
Sbjct: 64 NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE- 122
Query: 158 HPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEI 217
+ + A A F + G L AA I
Sbjct: 123 NGADV---QAAANGDFFKKTK----------------GRPGFYFGELPLSLAACTNQLAI 163
Query: 218 VELLLTN---EASTNIVDTKGSSPLHLAAWTGNVDIVRV---------LLCHG----PSV 261
V+ LL N A + D+ G++ LH + + +L G P++
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223
Query: 262 PNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG 315
+ + T L AA G V++ +L+ AA +
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHHH 270
Score = 135 bits (341), Expect = 8e-37
Identities = 50/267 (18%), Positives = 82/267 (30%), Gaps = 67/267 (25%)
Query: 178 PLHLASRNGH-------------SLRRGPGANVQD-SSGYSALHHAALN---GHKEIVEL 220
+ A + S +R + +D +G + L A LN G + + L
Sbjct: 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75
Query: 221 LLTNEASTNIV-----------DTKGSSPLHLAAWTGNVDIVRVLLCHGPSV-------- 261
LL T+ + KG + LH+A N+ +V +L+ +G V
Sbjct: 76 LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135
Query: 262 ---PNVNLMTKDNETALHCAAQYGHTPVVSQLLEH---SCDPTIRNSRHETALDLAAQYG 315
E L AA +V LL++ D + R+S T L +
Sbjct: 136 FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA 195
Query: 316 RLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTA 375
+T + N + A+L I
Sbjct: 196 DNTVDNT------------------------KFVTSMYNEILILGAKLHPTLKLEEITNR 231
Query: 376 SG-TALHEAALCGKLEVVKTLLEHGAD 401
G T L AA GK+ V+ +L+
Sbjct: 232 KGLTPLALAASSGKIGVLAYILQREIH 258
Score = 130 bits (329), Expect = 4e-35
Identities = 50/311 (16%), Positives = 84/311 (27%), Gaps = 78/311 (25%)
Query: 102 NETALHCAAQYGHTPVVSQLLE-------HSCDPTIRNSRH-ETALDLA---AQYGRLET 150
+ ++ A + + LL D ++ +T L A G+ +T
Sbjct: 13 DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72
Query: 151 VDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAA 210
+ L+ + G +ALH A
Sbjct: 73 IALLLD-----------------------VARKTDSLKQFVNASYTDSYYKGQTALHIAI 109
Query: 211 LNGHKEIVELLLTNEASTNIVDTK--------------GSSPLHLAAWTGNVDIVRVLLC 256
+ +V LL+ N A G PL LAA T + IV+ LL
Sbjct: 110 ERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169
Query: 257 HGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR 316
+ +++ T LH + V + S + +
Sbjct: 170 NSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS---------MYNEILILGAKLH 220
Query: 317 LETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTAS 376
+ GL +PL LA+ +G V+A +LQ +
Sbjct: 221 PTLKLEEITNRKGL---------------TPLALAASSGKIGVLAYILQREIHEP----- 260
Query: 377 GTALHEAALCG 387
H AA
Sbjct: 261 -ECRHAAAHHH 270
Score = 123 bits (311), Expect = 2e-32
Identities = 44/245 (17%), Positives = 73/245 (29%), Gaps = 47/245 (19%)
Query: 19 LEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGN 78
+ NG + +L AR+ L AS KG + LH+A N
Sbjct: 62 MLNLHNGQNDTIALLLDV--------ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN 113
Query: 79 VDIVRVLLCHGPSV-----------PNVNLMTKDNETALHCAAQYGHTPVVSQLLEH--- 124
+ +V +L+ +G V E L AA +V LL++
Sbjct: 114 MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ 173
Query: 125 SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR 184
D + R+S T L + +T + YN + +
Sbjct: 174 PADISARDSVGNTVLHALVEVADNTVDNT-----KFVTSMYN-----------EILILGA 217
Query: 185 NGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAW 244
H + + G + L AA +G ++ +L E H AA
Sbjct: 218 KLHP--TLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAH 268
Query: 245 TGNVD 249
+
Sbjct: 269 HHHHH 273
Score = 92.9 bits (231), Expect = 2e-21
Identities = 39/217 (17%), Positives = 62/217 (28%), Gaps = 55/217 (25%)
Query: 226 ASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP--NVNLMTKDN---ETALHCA-- 278
A + A N + LL + KD +T L A
Sbjct: 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63
Query: 279 -AQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 337
G ++ LL+ + + + G+
Sbjct: 64 NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQ--------------------- 102
Query: 338 AQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG---------------TALHE 382
+ LH+A + ++V L++ G DV L
Sbjct: 103 --------TALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSL 154
Query: 383 AALCGKLEVVKTLLEHG---ADLRIIDSKHNTVLDLL 416
AA +L +VK LL++ AD+ DS NTVL L
Sbjct: 155 AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 128 bits (325), Expect = 4e-36
Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
+G + LH AA NGH E+V+LLL A N D G +PLHLAA G++++V++LL G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-- 58
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 320
+VN K+ T LH AA+ GH VV LLE D ++ T L LAA+ G LE V
Sbjct: 59 -ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 321 DTLV 324
L+
Sbjct: 118 KLLL 121
Score = 127 bits (322), Expect = 1e-35
Identities = 56/122 (45%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 178 PLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
PLHLA+RNGH L G N +D +G + LH AA NGH E+V+LLL A N
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
D G +PLHLAA G++++V++LL G +VN K+ T LH AA+ GH VV LL
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 292 EH 293
E
Sbjct: 122 EA 123
Score = 116 bits (294), Expect = 1e-31
Identities = 55/160 (34%), Positives = 74/160 (46%), Gaps = 38/160 (23%)
Query: 101 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 160
+ T LH AA+ GH VV LLE D ++ T L LAA+ G LE V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----- 55
Query: 161 LIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIV 218
GA+V +D +G + LH AA NGH E+V
Sbjct: 56 ----------------------EA---------GADVNAKDKNGRTPLHLAARNGHLEVV 84
Query: 219 ELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
+LLL A N D G +PLHLAA G++++V++LL G
Sbjct: 85 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 113 bits (287), Expect = 1e-30
Identities = 65/167 (38%), Positives = 82/167 (49%), Gaps = 44/167 (26%)
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
G +PLHLAA G++++V++LL G +VN K+ T LH AA+ GH VV LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 295 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 354
D ++ GR +PLHLA+RN
Sbjct: 59 ADVNAKDK-----------NGR-----------------------------TPLHLAARN 78
Query: 355 GHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGA 400
GH VV LL+AG DVN + +G T LH AA G LEVVK LLE GA
Sbjct: 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 112 bits (283), Expect = 4e-30
Identities = 56/163 (34%), Positives = 76/163 (46%), Gaps = 41/163 (25%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
G +PLHLAA G++++V++LL G +VN K+ T LH AA+ GH VV LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
D ++ T L LAA+ G LE V L+
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL------------------------------ 88
Query: 186 GHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLLTNEA 226
GA+V +D +G + LH AA NGH E+V+LLL A
Sbjct: 89 ------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 105 bits (265), Expect = 2e-27
Identities = 52/138 (37%), Positives = 70/138 (50%), Gaps = 22/138 (15%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
L AARNG++ E+V+LLL A N D G +PLHLAA G
Sbjct: 6 LHLAARNGHL-------------------EVVKLLLEAGADVNAKDKNGRTPLHLAARNG 46
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET 137
++++V++LL G +VN K+ T LH AA+ GH VV LLE D ++ T
Sbjct: 47 HLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103
Query: 138 ALDLAAQYGRLETVDTLV 155
L LAA+ G LE V L+
Sbjct: 104 PLHLAARNGHLEVVKLLL 121
Score = 85.9 bits (214), Expect = 2e-20
Identities = 51/142 (35%), Positives = 62/142 (43%), Gaps = 44/142 (30%)
Query: 270 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 329
+ T LH AA+ GH VV LLE D ++ T
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT----------------------- 37
Query: 330 LIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGK 388
PLHLA+RNGH VV LL+AG DVN + +G T LH AA G
Sbjct: 38 -----------------PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80
Query: 389 LEVVKTLLEHGADLRIIDSKHN 410
LEVVK LLE GAD +++K
Sbjct: 81 LEVVKLLLEAGAD---VNAKDK 99
Score = 73.1 bits (181), Expect = 6e-16
Identities = 39/68 (57%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 347 PLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRII 405
PLHLA+RNGH VV LL+AG DVN + +G T LH AA G LEVVK LLE GAD+
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 406 DSKHNTVL 413
D T L
Sbjct: 65 DKNGRTPL 72
Score = 60.4 bits (148), Expect = 1e-11
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 18/94 (19%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
KD++ L AARNG+++VV+ +L A ++G PL AR E+V+LLL
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 89
A N D G +PLHLAA G++++V++LL G
Sbjct: 91 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 124 bits (315), Expect = 1e-34
Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 3/122 (2%)
Query: 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
S A NG + V+ + N G PLH AA G ++I+ LL G
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 259 PSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLE 318
++N K + T L A GH V LL D T++ TA +
Sbjct: 64 ---ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120
Query: 319 TV 320
+
Sbjct: 121 LL 122
Score = 119 bits (301), Expect = 1e-32
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 178 PLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
A +NG + +G N G LH+AA G EI+E LL A N
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVV 287
D +PL A + G+V V++LL G + + D TA ++
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSKG---ADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 104 bits (263), Expect = 3e-27
Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 22/134 (16%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
+ A +NG++ + V+ + N G PLH AA G
Sbjct: 11 FMWALKNGDL-------------------DEVKDYVAKGEDVNRTLEGGRKPLHYAADCG 51
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET 137
++I+ LL G ++N K + T L A GH V LL D T++ T
Sbjct: 52 QLEILEFLLLKGA---DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
Query: 138 ALDLAAQYGRLETV 151
A + +
Sbjct: 109 AFEATDNQAIKALL 122
Score = 104 bits (262), Expect = 3e-27
Identities = 25/155 (16%), Positives = 41/155 (26%), Gaps = 34/155 (21%)
Query: 98 MTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 157
+ + A + G V + D L AA G+LE ++ L
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL--- 59
Query: 158 HPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEI 217
L +G N D + L A GH
Sbjct: 60 -------------------------------LLKGADINAPDKHHITPLLSAVYEGHVSC 88
Query: 218 VELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVR 252
V+LLL+ A + G + +++
Sbjct: 89 VKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 102 bits (258), Expect = 1e-26
Identities = 28/154 (18%), Positives = 44/154 (28%), Gaps = 37/154 (24%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
A G++D V+ + G +VN + LH AA G ++ LL
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGE---DVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
D + H T L A G + V L
Sbjct: 64 ADINAPDKHHITPLLSAVYEGHVSCVKLL------------------------------- 92
Query: 186 GHSLRRGPGANVQDSSGYSALHHAALNGHKEIVE 219
L +G V+ G +A K +++
Sbjct: 93 ---LSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 99.8 bits (250), Expect = 2e-25
Identities = 31/160 (19%), Positives = 45/160 (28%), Gaps = 44/160 (27%)
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
A G++D V+ + G +VN + LH AA G ++ LL
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGE---DVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 295 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 354
D + H T PL A
Sbjct: 64 ADINAPDKHHIT----------------------------------------PLLSAVYE 83
Query: 355 GHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVK 393
GH S V LL G D ++ G TA +++
Sbjct: 84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 78.6 bits (195), Expect = 6e-18
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 347 PLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRII 405
A +NG V + G DVN G LH AA CG+LE+++ LL GAD+
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 406 DSKHNTVL 413
D H T L
Sbjct: 70 DKHHITPL 77
Score = 47.4 bits (114), Expect = 5e-07
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 18/88 (20%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
+ L AA G ++++E +L + A + PL V+LLL+
Sbjct: 36 TLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK 95
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVR 83
A + G + +++
Sbjct: 96 GADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 44.3 bits (106), Expect = 6e-06
Identities = 8/36 (22%), Positives = 11/36 (30%)
Query: 378 TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
A G L+ VK + G D+ L
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPL 44
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 122 bits (310), Expect = 4e-34
Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 194 GANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRV 253
G G + LH+AA NGH E V+ LL+ A N G++PLHLAA G+ +IV++
Sbjct: 1 GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 254 LLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 308
LL G +VN +KD T H A + GH +V L D R+
Sbjct: 61 LLAKG---ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 103 bits (261), Expect = 3e-27
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 178 PLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
PLH A++NGH+ L +G N + G + LH AA NGH EIV+LLL A N
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALH 276
G++P HLA G+ +IV++L G +VN + + H
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDAKG---ADVNARSWGSSHHHH 113
Score = 97.8 bits (245), Expect = 7e-25
Identities = 41/147 (27%), Positives = 51/147 (34%), Gaps = 38/147 (25%)
Query: 96 NLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
+KD T LH AA+ GH V +LL D R+ T L LAA+ G E V L+
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 156 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNG 213
GA+V + G + H A NG
Sbjct: 63 ------------------------------AK------GADVNARSKDGNTPEHLAKKNG 86
Query: 214 HKEIVELLLTNEASTNIVDTKGSSPLH 240
H EIV+LL A N S H
Sbjct: 87 HHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 92.1 bits (230), Expect = 8e-23
Identities = 43/150 (28%), Positives = 54/150 (36%), Gaps = 41/150 (27%)
Query: 265 NLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
+KD T LH AA+ GH V +LL D R+ T
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNT------------------ 44
Query: 325 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEA 383
PLHLA++NGH +V LL G DVN R+ G T H A
Sbjct: 45 ----------------------PLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82
Query: 384 ALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
G E+VK L GAD+ +
Sbjct: 83 KKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 91.3 bits (228), Expect = 2e-22
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 22/122 (18%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
L AA+NG+ E V+ LL+ A N G++PLHLAA G
Sbjct: 13 LHNAAKNGHA-------------------EEVKKLLSKGADVNARSKDGNTPLHLAAKNG 53
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET 137
+ +IV++LL G +VN +KD T H A + GH +V L D R+
Sbjct: 54 HAEIVKLLLAKG---ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSH 110
Query: 138 AL 139
Sbjct: 111 HH 112
Score = 90.9 bits (227), Expect = 2e-22
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 60 NIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
G++PLH AA G+ + V+ LL G +VN +KD T LH AA+ GH +V
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGA---DVNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
LL D R+ T LA + G E V L
Sbjct: 60 LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95
Score = 38.1 bits (90), Expect = 8e-04
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 18/76 (23%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
+ +D L AA+NG+ ++V+ +L++ A + G P + EIV+LL
Sbjct: 38 RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK 97
Query: 56 EASTNIVDTKGSSPLH 71
A N S H
Sbjct: 98 GADVNARSWGSSHHHH 113
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 122 bits (308), Expect = 1e-33
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 194 GANVQDSSG---YSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDI 250
G++ G L AA G + V +L+ N A N D G +PL+LA G+++I
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62
Query: 251 VRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDL 310
V VLL +G +VN + T LH AA GH + LL+H D ++ +TA D+
Sbjct: 63 VEVLLKNG---ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119
Query: 311 AAQYGRLETVDTL 323
+ G + + L
Sbjct: 120 SIGNGNEDLAEIL 132
Score = 119 bits (301), Expect = 1e-32
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 178 PLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
L A+R G + G N +D G + L+ A +GH EIVE+LL N A N V
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 291
D G +PLHLAA+ G+++I VLL HG +VN K +TA + G+ + L
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHG---ADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Query: 292 EHS 294
+ +
Sbjct: 134 KLN 136
Score = 108 bits (273), Expect = 2e-28
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 38/159 (23%)
Query: 101 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 160
D L AA+ G V L+ + D ++ T L LA +G LE V+ L+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL----- 67
Query: 161 LIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIV 218
+ GA+V D+ G++ LH AA GH EI
Sbjct: 68 ------------------KN-------------GADVNAVDAIGFTPLHLAAFIGHLEIA 96
Query: 219 ELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 257
E+LL + A N D G + ++ GN D+ +L
Sbjct: 97 EVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 105 bits (264), Expect = 3e-27
Identities = 41/159 (25%), Positives = 63/159 (39%), Gaps = 41/159 (25%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
L AA G D VR+L+ +G +VN + T L+ A +GH +V LL++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGA---DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 185
D ++ T L LAA G LE + L+ H
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIGHLEIAEVLL-----------------------KH----- 102
Query: 186 GHSLRRGPGANV--QDSSGYSALHHAALNGHKEIVELLL 222
GA+V QD G +A + NG++++ E+L
Sbjct: 103 --------GADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 100 bits (251), Expect = 2e-25
Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 22/137 (16%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
LLEAAR G + V +L+ N A N D G +PL+LA G
Sbjct: 18 LLEAARAGQD-------------------DEVRILMANGADVNAKDEYGLTPLYLATAHG 58
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET 137
+++IV VLL +G +VN + T LH AA GH + LL+H D ++ +T
Sbjct: 59 HLEIVEVLLKNGA---DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115
Query: 138 ALDLAAQYGRLETVDTL 154
A D++ G + + L
Sbjct: 116 AFDISIGNGNEDLAEIL 132
Score = 96.7 bits (242), Expect = 3e-24
Identities = 39/165 (23%), Positives = 60/165 (36%), Gaps = 44/165 (26%)
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
L AA G D VR+L+ +G +VN + T L+ A +GH +V LL++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGA---DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
Query: 295 CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 354
D ++ T PLHLA+
Sbjct: 71 ADVNAVDAIGFT----------------------------------------PLHLAAFI 90
Query: 355 GHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEH 398
GH + LL+ G DVN + G TA + G ++ + L +
Sbjct: 91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 67.0 bits (165), Expect = 9e-14
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 347 PLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRII 405
L A+R G V L+ G DVN + G T L+ A G LE+V+ LL++GAD+ +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 406 DSKHNTVL 413
D+ T L
Sbjct: 77 DAIGFTPL 84
Score = 54.7 bits (133), Expect = 2e-09
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
KD+ L A +G++++VE +L A G PL A EI E+LL +
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 56 EASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCH 88
A N D G + ++ GN D+ +L
Sbjct: 103 GADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 43.1 bits (103), Expect = 2e-05
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 363 LLQAGLDVNIRTASGTALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
G D+ L EAA G+ + V+ L+ +GAD+ D T L
Sbjct: 7 HHHHGSDLG------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPL 51
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 127 bits (321), Expect = 2e-33
Identities = 41/289 (14%), Positives = 86/289 (29%), Gaps = 54/289 (18%)
Query: 43 PLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVD-IVRVLLCHGPSVPNVNLMT-K 100
P +E+ L + ++ N + ++ + + N+N+ +
Sbjct: 73 PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL---NLNIPVDE 129
Query: 101 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG---RLETVDTLVRT 157
T LH + +V L++H + ++ E+ L A + T + L+
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 189
Query: 158 HPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKE- 216
P ++DS + LHH +
Sbjct: 190 L---------------------------------YPCLILEDSMNRTILHHIIITSGMTG 216
Query: 217 -----------IVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSV-PNV 264
++ ++ + T D + L + +
Sbjct: 217 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276
Query: 265 NLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 313
N + +T L+ AA+ G+ +V LL++ DP I N +D A
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
Score = 122 bits (308), Expect = 1e-31
Identities = 50/262 (19%), Positives = 98/262 (37%), Gaps = 23/262 (8%)
Query: 170 QSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAAL-NGHKEIVELLLTNEAST 228
Q LFP S N S R N + S H + + +E+ + + +
Sbjct: 68 QRLLFPEIQEMPTSLNNDSSNR----NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 123
Query: 229 NI-VDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH---T 284
NI VD G++PLH N+++V+ L+ HG N E+ L A + + +
Sbjct: 124 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGS---NRLYGDNMGESCLVKAVKSVNNYDS 180
Query: 285 PVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLF 343
LL++ + +S + T L + + + ++ + + Q+
Sbjct: 181 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI 240
Query: 344 ---------PASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVK 393
+ + ++ + +N + ++G T L+ AA G + +V
Sbjct: 241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 300
Query: 394 TLLEHGADLRIIDSKHNTVLDL 415
LL++GAD I + +D
Sbjct: 301 ALLDYGADPFIANKSGLRPVDF 322
Score = 82.8 bits (204), Expect = 1e-17
Identities = 33/287 (11%), Positives = 82/287 (28%), Gaps = 37/287 (12%)
Query: 149 ETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHH 208
T D P + ++ + P + + N Q + L
Sbjct: 16 GTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVN------DNEQKMKLEAFLQR 69
Query: 209 AALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVD-IVRVLLCHGPSVPNVNLM 267
+E+ L + ++ N + ++ + + N+N+
Sbjct: 70 LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL---NLNIP 126
Query: 268 T-KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG---RLETVDTL 323
+ T LH + +V L++H + ++ E+ L A + T + L
Sbjct: 127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 186
Query: 324 VRTHPGLIQAYNARAQSTLFPASPLH----LASRNGHRSVVARLLQAGLDVNIR------ 373
+ + ++ + + LH + G + L + ++
Sbjct: 187 LDYLYPCLILEDSMNR------TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI 240
Query: 374 ---TASGTALHEAALCGKLEVVKTLLEHGADLRII----DSKHNTVL 413
T + + + + L+ + + DS +T L
Sbjct: 241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 287
Score = 78.5 bits (193), Expect = 3e-16
Identities = 31/241 (12%), Positives = 61/241 (25%), Gaps = 72/241 (29%)
Query: 21 AARNGNIQVVEKILSQRA------------------KRSGPLAREIVELLLTNEASTNIV 62
N+++V+ ++ + + + LL +
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLL 122
D+ + LH T + T AA+Y ++ ++
Sbjct: 198 DSMNRTILHHIIITSGM------------------------TGCSAAAKYYLDILMGWIV 233
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 182
+ P + + + +
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNG------------------------------ERKDSIL 263
Query: 183 SRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLA 242
N QDS+G + L+ AA G+ IV+ LL A I + G P+
Sbjct: 264 ENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Query: 243 A 243
A
Sbjct: 324 A 324
Score = 37.3 bits (86), Expect = 0.007
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 23/65 (35%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSP 69
+D + L AAR GN IV+ LL A I + G P
Sbjct: 279 QDSNGDTCLNIAARLGN-------------------ISIVDALLDYGADPFIANKSGLRP 319
Query: 70 LHLAA 74
+ A
Sbjct: 320 VDFGA 324
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 121 bits (304), Expect = 1e-31
Identities = 50/319 (15%), Positives = 84/319 (26%), Gaps = 100/319 (31%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTK----GSSPLHLA 73
L + G+ +E ++ LLT++ + + G + L A
Sbjct: 9 LFDIVSRGSPDGLE---------------GLLSFLLTHKKRLTDEEFREPSTGKTCLPKA 53
Query: 74 AW---TGNVDIVRVLLCHGPSVPNVNLMTKDN--------ETALHCAAQYGHTPVVSQLL 122
G D + +LL N+ +TALH A + V L+
Sbjct: 54 LLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLV 113
Query: 123 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 182
E D +A+A+ F
Sbjct: 114 EKGADV-------------------------------------HAQARGRFFQPKD---- 132
Query: 183 SRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTN---EASTNIVDTKGSSPL 239
G L AA IV L N +A D++G++ L
Sbjct: 133 ------------EGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
Query: 240 HLAAWTGN---------VDIVRVLLCHG----PSVPNVNLMTKDNETALHCAAQYGHTPV 286
H + + +LL P L+ D + L AA+ G +
Sbjct: 181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240
Query: 287 VSQLLEH-SCDPTIRNSRH 304
++ D + H
Sbjct: 241 FQHIIRREIADAAAHHHHH 259
Score = 117 bits (295), Expect = 2e-30
Identities = 52/267 (19%), Positives = 80/267 (29%), Gaps = 68/267 (25%)
Query: 102 NETALHCAAQYG----HTPVVSQLLEHSCDPTIRNSRH----ETALDLAA---QYGRLET 150
N L G ++S LL H T R +T L A GR +T
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 151 VDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDS--SGYSALHH 208
+ L+ + ++R + +D G +ALH
Sbjct: 65 IPILLD-------------------------IAEKTGNMREFINSPFRDVYYRGQTALHI 99
Query: 209 AALNGHKEIVELLLTNEASTNIVDTK--------------GSSPLHLAAWTGNVDIVRVL 254
A K VELL+ A + G PL LAA T IV L
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159
Query: 255 LCHGPSVPNVNLMTKDNETALHCAAQYGH---------TPVVSQLLEH-------SCDPT 298
+G ++ T LH T + LL +
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEA 219
Query: 299 IRNSRHETALDLAAQYGRLETVDTLVR 325
+ N+ + L +AA+ G++ ++R
Sbjct: 220 LLNNDGLSPLMMAAKTGKIGIFQHIIR 246
Score = 114 bits (286), Expect = 4e-29
Identities = 44/254 (17%), Positives = 77/254 (30%), Gaps = 52/254 (20%)
Query: 203 YSALHHAALNGHKEIVELLLTNEASTNIVDTK----GSSPLHLAAW---TGNVDIVRVLL 255
+ + + +G + ++ LLT++ + + G + L A G D + +LL
Sbjct: 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69
Query: 256 CHGPSVPNVNLMTKDN--------ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH--- 304
N+ +TALH A + V L+E D +
Sbjct: 70 DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ 129
Query: 305 -----------ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR 353
E L LAA + V L G QA + R Q + + LH
Sbjct: 130 PKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN--GHKQA-DLRRQDS-RGNTVLHALVA 185
Query: 354 NGH---------RSVVARLLQAGLDVNIRTASG--------TALHEAALCGKLEVVKTLL 396
+ LL + T + L AA GK+ + + ++
Sbjct: 186 IADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245
Query: 397 EHGADLRIIDSKHN 410
+ H+
Sbjct: 246 RREIA--DAAAHHH 257
Score = 48.6 bits (116), Expect = 1e-06
Identities = 31/142 (21%), Positives = 39/142 (27%), Gaps = 39/142 (27%)
Query: 271 NETALHCAAQYG----HTPVVSQLLEHSCDPTIRNSRH----ETALDLAA---QYGRLET 319
N L G ++S LL H T R +T L A GR +T
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 320 VDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASGTA 379
+ L + F SP G TA
Sbjct: 65 IPIL-------LDIAEKTGNMREFINSPFRDVYYRGQ---------------------TA 96
Query: 380 LHEAALCGKLEVVKTLLEHGAD 401
LH A V+ L+E GAD
Sbjct: 97 LHIAIERRCKHYVELLVEKGAD 118
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 115 bits (291), Expect = 1e-30
Identities = 21/171 (12%), Positives = 50/171 (29%), Gaps = 25/171 (14%)
Query: 177 SPLHLASRNGHS------LRRG---PGANVQDSSGYSALHHAALNGHKEIVELLLTNEAS 227
+ A+ G +G + ++ + Y L + +I L+ A
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 228 TNIVDTKGSSPLHLAAWTGNVDI------VRVLLCHGPSVPNVNLMTKDNETALHCAAQY 281
+G++ G DI ++ L G ++ + K + +
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG---ADITALYKPYKIVVFKNIFN 124
Query: 282 GH------TPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVR 325
P+ + S I++ TAL+ + + + +
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175
Score = 114 bits (288), Expect = 3e-30
Identities = 26/213 (12%), Positives = 47/213 (22%), Gaps = 44/213 (20%)
Query: 68 SPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 127
+ AA G + L G L + L + L+ D
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 128 PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 187
R T Q G + T ++
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGT-TELCKIFLEK----------------------- 103
Query: 188 SLRRGPGANV--QDSSGYSALHHAALNGHKEIVE-------LLLTNEASTNIVDTKGSSP 238
GA++ + N + E + + I D G +
Sbjct: 104 ------GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157
Query: 239 LHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDN 271
L ++++ + NL K+N
Sbjct: 158 LEFVKRCQKPIALKMMEDYI---KKYNL--KEN 185
Score = 113 bits (285), Expect = 8e-30
Identities = 27/184 (14%), Positives = 47/184 (25%), Gaps = 19/184 (10%)
Query: 237 SPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 296
+ AA G + L G L + L + L+ D
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 297 PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQA---YNARAQS--TLFPASPLHLA 351
R T Q G + T ++ A + +
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGT-TELCKIFLEKGADITALYKPYKI-----VVFKN 121
Query: 352 SRNGHRSVVAR-------LLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLR 403
N Q+GL + I+ G TAL C K +K + ++
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181
Query: 404 IIDS 407
+ ++
Sbjct: 182 LKEN 185
Score = 98.2 bits (245), Expect = 3e-24
Identities = 22/175 (12%), Positives = 51/175 (29%), Gaps = 33/175 (18%)
Query: 12 MGKDQDLLEAARNGNIQVVEKILSQRA------KRSGPL-----------AREIVELLLT 54
M + + + AA G + ++ + +S L +I L+
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 55 NEASTNIVDTKGSSPLHLAAWTGNVDI------VRVLLCHGPSVPNVNLMTKDNETALHC 108
A +G++ G DI ++ L G ++ + K + +
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG---ADITALYKPYKIVVFK 120
Query: 109 AAQYGH------TPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVR 156
P+ + S I++ TAL+ + + + +
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175
Score = 84.3 bits (209), Expect = 3e-19
Identities = 19/164 (11%), Positives = 39/164 (23%), Gaps = 24/164 (14%)
Query: 269 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR---HETALDLAAQYGRLETVDTLVR 325
+ AA G +L E + + L R + L+
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 326 THPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVAR------LLQAGLDVNIRTASG-T 378
I++ + + G + L+ G D+
Sbjct: 64 -KGADIKSRTKEGT------TLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKI 116
Query: 379 ALHEAALCGKLEVVKT-------LLEHGADLRIIDSKHNTVLDL 415
+ + ++ + + G L I D T L+
Sbjct: 117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160
Score = 75.9 bits (187), Expect = 3e-16
Identities = 11/122 (9%), Positives = 33/122 (27%), Gaps = 21/122 (17%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
+ G + E+ ++ L A + + +
Sbjct: 79 FFPLFQGGGNDITGTT-------------ELCKIFLEKGADITALYKPYKIVVFKNIFNY 125
Query: 78 NVD------IVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIR 131
VD + +++ S + + K TAL + + + ++ ++
Sbjct: 126 FVDENEMIPLYKLIFSQ--SGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183
Query: 132 NS 133
+
Sbjct: 184 EN 185
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 107 bits (271), Expect = 7e-29
Identities = 43/93 (46%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 201 SGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPS 260
+G + LH AA NGH E+V+LLL A N D G +PLHLAA G++++V++LL G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-- 58
Query: 261 VPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 293
+VN K+ T LH AA+ GH VV LLE
Sbjct: 59 -ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 94.3 bits (236), Expect = 6e-24
Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 178 PLHLASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIV 231
PLHLA+RNGH L G N +D +G + LH AA NGH E+V+LLL A N
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHG 258
D G +PLHLAA G++++V++LL G
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 88.2 bits (220), Expect = 1e-21
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 66 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 125
G +PLHLAA G++++V++LL G +VN K+ T LH AA+ GH VV LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 126 CDPTIRNSRHETALDLAAQYGRLETVDTLV 155
D ++ T L LAA+ G LE V L+
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 88.2 bits (220), Expect = 1e-21
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 235 GSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHS 294
G +PLHLAA G++++V++LL G +VN K+ T LH AA+ GH VV LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 295 CDPTIRNSRHETALDLAAQYGRLETVDTLV 324
D ++ T L LAA+ G LE V L+
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 85.5 bits (213), Expect = 9e-21
Identities = 49/132 (37%), Positives = 57/132 (43%), Gaps = 41/132 (31%)
Query: 270 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 329
+ T LH AA+ GH VV LLE D ++ T
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT----------------------- 37
Query: 330 LIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGK 388
PLHLA+RNGH VV LL+AG DVN + +G T LH AA G
Sbjct: 38 -----------------PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80
Query: 389 LEVVKTLLEHGA 400
LEVVK LLE GA
Sbjct: 81 LEVVKLLLEAGA 92
Score = 83.9 bits (209), Expect = 4e-20
Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 22/107 (20%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
L AARNG++ E+V+LLL A N D G +PLHLAA G
Sbjct: 6 LHLAARNGHL-------------------EVVKLLLEAGADVNAKDKNGRTPLHLAARNG 46
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEH 124
++++V++LL G +VN K+ T LH AA+ GH VV LLE
Sbjct: 47 HLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 81.6 bits (203), Expect = 3e-19
Identities = 41/128 (32%), Positives = 53/128 (41%), Gaps = 38/128 (29%)
Query: 101 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 160
+ T LH AA+ GH VV LLE D ++ T L LAA+ G LE V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--- 57
Query: 161 LIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANV--QDSSGYSALHHAALNGHKEIV 218
GA+V +D +G + LH AA NGH E+V
Sbjct: 58 ---------------------------------GADVNAKDKNGRTPLHLAARNGHLEVV 84
Query: 219 ELLLTNEA 226
+LLL A
Sbjct: 85 KLLLEAGA 92
Score = 73.9 bits (183), Expect = 1e-16
Identities = 39/68 (57%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 347 PLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADLRII 405
PLHLA+RNGH VV LL+AG DVN + +G T LH AA G LEVVK LLE GAD+
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 406 DSKHNTVL 413
D T L
Sbjct: 65 DKNGRTPL 72
Score = 42.7 bits (102), Expect = 1e-05
Identities = 20/36 (55%), Positives = 21/36 (58%)
Query: 378 TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVL 413
T LH AA G LEVVK LLE GAD+ D T L
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 39
Score = 26.2 bits (59), Expect = 7.9
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 18/62 (29%)
Query: 14 KDQD----LLEAARNGNIQVVEKILSQRAK-----RSG--PL---AR----EIVELLLTN 55
KD++ L AARNG+++VV+ +L A ++G PL AR E+V+LLL
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Query: 56 EA 57
A
Sbjct: 91 GA 92
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 98.4 bits (246), Expect = 3e-25
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 182 ASRNGHS------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKG 235
S + H + RG +++ S L AA G + V +L+ N A D G
Sbjct: 1 GSSHHHHHHSSGLVPRG--SHM-GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 236 SSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 290
S+PLHLAA G++++V++LL G +V K +TA + G+ + L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAG---ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 96.9 bits (242), Expect = 1e-24
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 47 EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 106
L+ + + + L AA G D VR+L+ +G +V K+ T L
Sbjct: 8 HHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGA---DVAAKDKNGSTPL 61
Query: 107 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
H AA+ GH VV LLE D ++ +TA D++ G + + L
Sbjct: 62 HLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 82.2 bits (204), Expect = 2e-19
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 44/151 (29%)
Query: 73 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 132
+ + L+ G ++ D L AA+ G V L+ + D ++
Sbjct: 1 GSSHHHHHHSSGLVPRGS---HMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKD 54
Query: 133 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRG 192
T L LAA+ G LE V L+
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLLEA----------------------------------- 79
Query: 193 PGANV--QDSSGYSALHHAALNGHKEIVELL 221
GA+V QD G +A + NG++++ E+L
Sbjct: 80 -GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 78.8 bits (195), Expect = 4e-18
Identities = 33/155 (21%), Positives = 50/155 (32%), Gaps = 47/155 (30%)
Query: 242 AAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 301
+ + L+ G ++ D L AA+ G V L+ + D ++
Sbjct: 1 GSSHHHHHHSSGLVPRGS---HMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKD 54
Query: 302 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVA 361
T PLHLA+RNGH VV
Sbjct: 55 KNGST----------------------------------------PLHLAARNGHLEVVK 74
Query: 362 RLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTL 395
LL+AG DV + G TA + G ++ + L
Sbjct: 75 LLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 75.7 bits (187), Expect = 5e-17
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 11/106 (10%)
Query: 311 AAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRSVVARLLQAGLDV 370
+ + LV + + L A+R G V L+ G DV
Sbjct: 1 GSSHHHHHHSSGLV-PRGSHM---GSDLGK------KLLEAARAGQDDEVRILMANGADV 50
Query: 371 NIRTASG-TALHEAALCGKLEVVKTLLEHGADLRIIDSKHNTVLDL 415
+ +G T LH AA G LEVVK LLE GAD+ D T D+
Sbjct: 51 AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
Score = 67.2 bits (165), Expect = 4e-14
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 22/104 (21%)
Query: 18 LLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTG 77
LLEAAR G + V +L+ N A D GS+PLHLAA G
Sbjct: 28 LLEAARAGQD-------------------DEVRILMANGADVAAKDKNGSTPLHLAARNG 68
Query: 78 NVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQL 121
++++V++LL G +V K +TA + G+ + L
Sbjct: 69 HLEVVKLLLEAG---ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 78.5 bits (193), Expect = 2e-16
Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 8/157 (5%)
Query: 143 AQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSG 202
A+Y + + ++ A G L
Sbjct: 112 AKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPD 169
Query: 203 YSALHHAALNGHK---EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGP 259
+ALH A + + IV+ L+ N + + KGS+ LH T N + +++LL
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229
Query: 260 SVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 296
S+ N + ET L A + H L +
Sbjct: 230 SIEIAN---ESGETPLDIAKRLKHEHCEELLTQALSG 263
Score = 71.6 bits (175), Expect = 3e-14
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 63 DTKGSSPLHLAAWTGN---VDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
+ LHLA + + + IV L+ + N++ T TALH + +
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSG---NLDKQTGKGSTALHYCCLTDNAECLK 222
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 155
LL I N ET LD+A + + L
Sbjct: 223 LLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 71.6 bits (175), Expect = 3e-14
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 232 DTKGSSPLHLAAWTGN---VDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 288
+ LHLA + + + IV L+ + N++ T TALH + +
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSG---NLDKQTGKGSTALHYCCLTDNAECLK 222
Query: 289 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 324
LL I N ET LD+A + + L
Sbjct: 223 LLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 65.0 bits (158), Expect = 6e-12
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 34 LSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP 93
L + + IV+ L+ N + + KGS+ LH T N + +++LL S+
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232
Query: 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCD 127
N + ET L A + H L +
Sbjct: 233 IAN---ESGETPLDIAKRLKHEHCEELLTQALSG 263
Score = 63.5 bits (154), Expect = 2e-11
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 346 SPLHLASRNGHRS---VVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGAD 401
+ LHLA R+ R+ +V L+Q +++ +T G TALH L E +K LL A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 402 LRIIDSKHNTVLDLLKQ 418
+ I + T LD+ K+
Sbjct: 231 IEIANESGETPLDIAKR 247
Score = 57.7 bits (139), Expect = 2e-09
Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 40/156 (25%)
Query: 73 AAWTGNVDIVRVLLCHG---PSVPNVNLMTKDNETALHCAAQYG---HTPVVSQLLEHSC 126
A T ++ + G + + +ETALH A + +V L+++S
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196
Query: 127 DPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNG 186
+ + + TAL E + L
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLL-------------------------------- 224
Query: 187 HSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLL 222
LR + + SG + L A H+ ELL
Sbjct: 225 --LRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 56.5 bits (136), Expect = 4e-09
Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 13/131 (9%)
Query: 242 AAWTGNVDIVRVLLCHG---PSVPNVNLMTKDNETALHCAAQYG---HTPVVSQLLEHSC 295
A T ++ + G + + +ETALH A + +V L+++S
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196
Query: 296 DPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNG 355
+ + + TAL E + L+R I+ N + +PL +A R
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLR-GKASIEIANESGE------TPLDIAKRLK 249
Query: 356 HRSVVARLLQA 366
H L QA
Sbjct: 250 HEHCEELLTQA 260
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 73.5 bits (180), Expect = 1e-14
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 6/115 (5%)
Query: 181 LASRNGHSLRRGPGANVQDSSGYSALHHAALNGHK---EIVELLLTNEASTNIVDTKGSS 237
A NG + + LH A ++ +V+ ++ N + G++
Sbjct: 169 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 228
Query: 238 PLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 292
LH AA D +++LL V + + ETAL A + H L +
Sbjct: 229 ALHYAALYNQPDCLKLLLKGR---ALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 71.6 bits (175), Expect = 4e-14
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 63 DTKGSSPLHLAAWTGN---VDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 119
LHLA N + +V ++ +G +++ D TALH AA Y +
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGG---HLDAKAADGNTALHYAALYNQPDCLK 243
Query: 120 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 154
LL+ N ETALD+A + E + L
Sbjct: 244 LLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 71.6 bits (175), Expect = 4e-14
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 232 DTKGSSPLHLAAWTGN---VDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 288
LHLA N + +V ++ +G +++ D TALH AA Y +
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGG---HLDAKAADGNTALHYAALYNQPDCLK 243
Query: 289 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 323
LL+ N ETALD+A + E + L
Sbjct: 244 LLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 71.2 bits (174), Expect = 6e-14
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 177 SPLHLASRNGHS---------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAS 227
LHLA + + ++ G + + + G +ALH+AAL + ++LLL A
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251
Query: 228 TNIVDTKGSSPLHLAAWTGNVDIVRVL 254
V+ G + L +A + + +L
Sbjct: 252 VGTVNEAGETALDIARKKHHKECEELL 278
Score = 66.6 bits (162), Expect = 2e-12
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 346 SPLHLASRNGHRS---VVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGAD 401
LHLA + +++ +V ++Q G ++ + A G TALH AAL + + +K LL+ A
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251
Query: 402 LRIIDSKHNTVLDLLKQ 418
+ ++ T LD+ ++
Sbjct: 252 VGTVNEAGETALDIARK 268
Score = 63.5 bits (154), Expect = 2e-11
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 34 LSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP 93
L+ + L +V+ ++ N + G++ LH AA D +++LL
Sbjct: 196 LAVKVANQASLP--LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA--- 250
Query: 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLE 123
V + + ETAL A + H L +
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 59.2 bits (143), Expect = 5e-10
Identities = 29/165 (17%), Positives = 48/165 (29%), Gaps = 40/165 (24%)
Query: 63 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTK---DNETALHCAAQYGH---TP 116
T L A ++ V +G E LH A + + P
Sbjct: 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 207
Query: 117 VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA 176
+V ++++ + + TAL AA Y + + + L
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL---------------------- 245
Query: 177 SPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELL 221
L+ + +G +AL A HKE ELL
Sbjct: 246 ------------LKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 58.5 bits (141), Expect = 1e-09
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 13/144 (9%)
Query: 232 DTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTK---DNETALHCAAQYGH---TP 285
T L A ++ V +G E LH A + + P
Sbjct: 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 207
Query: 286 VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA 345
+V ++++ + + TAL AA Y + + + L++ L+ N +
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGE------ 260
Query: 346 SPLHLASRNGHRSVVARLLQAGLD 369
+ L +A + H+ L QA
Sbjct: 261 TALDIARKKHHKECEELLEQAQAG 284
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 70.6 bits (172), Expect = 2e-13
Identities = 40/200 (20%), Positives = 63/200 (31%), Gaps = 6/200 (3%)
Query: 128 PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 187
P SR E + A+Y + + L R Q + P + +
Sbjct: 125 PGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLR 184
Query: 188 SLRRGPGANVQD-SSGYSALHHAALNGHKEIVELLLTNEASTNIV--DTKGSSPLHLAAW 244
S P ++ G + + L + A N V ++PL A
Sbjct: 185 SKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA 244
Query: 245 TGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 304
++ LL +G NVN LH A GHT + L+ D R+S
Sbjct: 245 ANSLLACEFLLQNGA---NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 305 ETALDLAAQYGRLETVDTLV 324
L +A + + V L
Sbjct: 302 RDPLTIAMETANADIVTLLR 321
Score = 65.6 bits (159), Expect = 7e-12
Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 3/122 (2%)
Query: 34 LSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVP 93
L + + L L + + ++PL A ++ LL +G
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA--- 259
Query: 94 NVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDT 153
NVN LH A GHT + L+ D R+S L +A + + V
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 154 LV 155
L
Sbjct: 320 LR 321
Score = 65.2 bits (158), Expect = 1e-11
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 199 DSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHG 258
+ L A E LL N A+ N D+ G PLH A G+ + + L G
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 259 PSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLE 292
+ + + L A + + +V+ L
Sbjct: 292 ADLGARD---SEGRDPLTIAMETANADIVTLLRL 322
Score = 59.8 bits (144), Expect = 5e-10
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 344 PASPLHLASRNGHRSVVARLLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGADL 402
A+PL A+ LLQ G +VN ++G LH A + G + L+ GADL
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 403 RIIDSKHNTVLDLLKQFPPHAVHDISTIINPVMSYEFLVSGGGTRSVSDTDDMQE 457
DS+ L + + A DI T++ E + G + D ++
Sbjct: 295 GARDSEGRDPLTIAME---TANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 70.3 bits (172), Expect = 3e-13
Identities = 33/151 (21%), Positives = 52/151 (34%), Gaps = 19/151 (12%)
Query: 15 DQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLHLAA 74
Q L A N ++ V + + PL LHLA
Sbjct: 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPL-------------PGPDAQAPEELVLHLAV 179
Query: 75 WT---GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIR 131
++ +V ++ +G +++ D TALH AA Y + LL+
Sbjct: 180 KVANQASLPLVDFIIQNGG---HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV 236
Query: 132 NSRHETALDLAAQYGRLETVDTLVRTHPGLI 162
N ETALD+A + E + L + G
Sbjct: 237 NEAGETALDIARKKHHKECEELLEQAQAGTF 267
Score = 62.6 bits (152), Expect = 9e-11
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 199 DSSGYSALHHAALNGHK---EIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLL 255
+ LH A ++ +V+ ++ N + G++ LH AA D +++LL
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 227
Query: 256 CHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 304
V VN + ETAL A + H +LLE + T H
Sbjct: 228 KGRALVGTVN---EAGETALDIARKKHHKECE-ELLEQAQAGTFAFPLH 272
Score = 62.6 bits (152), Expect = 1e-10
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 232 DTKGSSPLHLAAWT---GNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVS 288
LHLA ++ +V ++ +G +++ D TALH AA Y +
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGG---HLDAKAADGNTALHYAALYNQPDCLK 224
Query: 289 QLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLI 331
LL+ N ETALD+A + E + L + G
Sbjct: 225 LLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 267
Score = 61.1 bits (148), Expect = 3e-10
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 346 SPLHLASRNGHRSVVAR---LLQAGLDVNIRTASG-TALHEAALCGKLEVVKTLLEHGAD 401
LHLA + +++ + ++Q G ++ + A G TALH AAL + + +K LL+ A
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232
Query: 402 LRIIDSKHNTVLDLLKQ 418
+ ++ T LD+ ++
Sbjct: 233 VGTVNEAGETALDIARK 249
Score = 60.3 bits (146), Expect = 6e-10
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 177 SPLHLASRNGHS---------LRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEAS 227
LHLA + + ++ G + + + G +ALH+AAL + ++LLL A
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232
Query: 228 TNIVDTKGSSPLHLAAWTGNVDIVRVL 254
V+ G + L +A + + +L
Sbjct: 233 VGTVNEAGETALDIARKKHHKECEELL 259
Score = 39.1 bits (91), Expect = 0.003
Identities = 25/178 (14%), Positives = 45/178 (25%), Gaps = 48/178 (26%)
Query: 239 LHLAAWTGNVDIVRVLLCHG----PSVPNVNLMTKDNETALHCA---AQYGHTPVVSQLL 291
L A ++ V +G +P + E LH A A P+V ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDA-QAPEELVLHLAVKVANQASLPLVDFII 194
Query: 292 EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA 351
++ + + G + LH A
Sbjct: 195 QNGGHLDAKAAD-----------GN-----------------------------TALHYA 214
Query: 352 SRNGHRSVVARLLQAGLDVNIRTASGTALHEAALCGKLEVVKTLLEHGADLRIIDSKH 409
+ + LL+ V +G + A + + LLE H
Sbjct: 215 ALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 272
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 1e-10
Identities = 78/451 (17%), Positives = 128/451 (28%), Gaps = 155/451 (34%)
Query: 99 TKDNETA--LHCAAQY-GHTPVVSQLLEHSCDPTIRNSRHE---TALD------------ 140
D+E ++ G+ + +P+ + L
Sbjct: 49 AADDEPTTPAELVGKFLGY-------VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 141 --LAAQYGRLETVDTLVRTHPGLIQAY-NARAQS----TLFPASPLHLASRNGHSLRR-- 191
LAA+ L+ DT + LI+ Y AR + S L A G++ +
Sbjct: 102 HALAAKL--LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA--QLV 157
Query: 192 ----GPGAN------VQD-SSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPLH 240
G G ++D Y L + E + L+ V T+G L+
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG---LN 214
Query: 241 LAAW------TGNVDIVRVLLCHGP-SVPNVNLMTKDNETALHCAAQY-------GHTPV 286
+ W T + D L P S P + + L A Y G TP
Sbjct: 215 ILEWLENPSNTPDKDY----LLSIPISCPLIGV------IQL---AHYVVTAKLLGFTP- 260
Query: 287 VSQLLEHSCDPTIR----------------NSRHETALD---------LAAQ--YGRLET 319
+L + T S + + Y
Sbjct: 261 -GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 320 VDTLVR-------THP-------GL----IQAYNARAQSTLFPASPLHLASRNGHRSVV- 360
+++ P L +Q Y + S L + ++ NG +++V
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 361 ---ARLLQAGLDVNIRTA---SGTALHEAALCG-KLEVVKT-----------LLEHGADL 402
+ L GL++ +R A SG KL+ LL +DL
Sbjct: 380 SGPPQSLY-GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 403 RIIDSKHNTVL----DLLKQFPPHAVHDIST 429
D N V D+ Q P V+D
Sbjct: 439 INKDLVKNNVSFNAKDI--QIP---VYDTFD 464
Score = 58.1 bits (140), Expect = 4e-09
Identities = 92/451 (20%), Positives = 140/451 (31%), Gaps = 156/451 (34%)
Query: 18 LLEAARNGNIQVV--------------EKILSQRAKRSGPLAREIVEL-------LLTNE 56
L A GN Q+V E L + L ++++ L+
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEE--LRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 57 ASTNIVDTKGSSPLHLAAW------TGNVDIVRVLLCHGP-SVPNVNLMTKDNETALHCA 109
V T+G L++ W T + D L P S P + + L
Sbjct: 203 LDAEKVFTQG---LNILEWLENPSNTPDKDY----LLSIPISCPLIGV------IQL--- 246
Query: 110 AQY-------GHTPVVSQLLEHSCDPTIRNSRHETALDLAA-----QYGRL--ETVDTL- 154
A Y G TP +L + T + TA+ +A + + + L
Sbjct: 247 AHYVVTAKLLGFTP--GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 155 ---VRTHPGLIQAYNARAQSTLFPASPLHLASRNGH-------SLRRGPGANVQDSSGYS 204
VR + +AY +T P S L + N S+ VQD
Sbjct: 305 FIGVRCY----EAY----PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD----- 351
Query: 205 ALHHAALNGH---KEIVELLLTNEASTNIVDTKGSSP--------LHL---AAWTGNVDI 250
+ N H + VE+ L N A +V S P L L A +G +D
Sbjct: 352 --YVNKTNSHLPAGKQVEISLVNGAKNLVV----SGPPQSLYGLNLTLRKAKAPSG-LDQ 404
Query: 251 VRVLLC-----------------HGPS-VPNVNLMTKD-NETALHCAAQYGHTPVVSQLL 291
R+ H VP +L+ KD + + A+ PV
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV----- 459
Query: 292 EHSCD-PTIRNSRHETALDLAAQYGRL----ETVDTLVRTH-----PGLIQAYNARAQST 341
+ D +R + + RL ET TH PG S
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG--------GASG 511
Query: 342 LFPASPLHLASRNGHRSVVARLLQAG-LDVN 371
L L +++G V R++ AG LD+N
Sbjct: 512 L---GVLTHRNKDG-TGV--RVIVAGTLDIN 536
Score = 52.4 bits (125), Expect = 3e-07
Identities = 57/402 (14%), Positives = 113/402 (28%), Gaps = 120/402 (29%)
Query: 124 HSCDP-TIRNSRHETALDL-AAQYGRLETV-DTLVRTHPGLIQAYNARAQSTLFPASPLH 180
+S P T+ + E L + A + + + + P + A P +P
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP---EPTEGFAADDE-PTTPAE 59
Query: 181 LASRN-GHSLRRGPGANVQDSSGYSALHHAALNGHKEIVELLLTNEASTNIVDTKGSSPL 239
L + G+ V+ S +++ L L E + + +
Sbjct: 60 LVGKFLGYVSSL-----VEPSKVGQ---------FDQVLNLCL-TEFENCYL---EGNDI 101
Query: 240 H-LAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGHTPVVSQLLEHSCDPT 298
H LAA ++L + ++ + K+ TA A + S L +
Sbjct: 102 HALAA--------KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 299 IRNSRHETALDLAAQYG----RLETVD---TLVRTHPGLIQAYNARAQSTLFPASPLHLA 351
+ L A +G + + L +T+ L+ + TL L
Sbjct: 154 AQ---------LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 352 SRNGHRSVVARLLQAGLDVN--IRTASGT--------------------ALHEAALC--- 386
+ ++ GL++ + S T H
Sbjct: 205 AE--------KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 387 ----GKL-EVVKTLLEHGADL---RII------DSKHNTVLDLLK-----------QFPP 421
G+L +K H L I +S +V + +P
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 422 HAVHDISTIINPVMSYEFLVSGGGTRS----VSDTDDMQEEK 459
+ + P + + L + G S +S+ Q +
Sbjct: 317 TS-------LPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Score = 52.4 bits (125), Expect = 3e-07
Identities = 60/345 (17%), Positives = 100/345 (28%), Gaps = 139/345 (40%)
Query: 12 MGKDQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVELLLTNEASTNIVDTKGSSPLH 71
MG D L + + A+++ A + DT G S L
Sbjct: 1631 MGMD--LYKTS--------------------KAAQDVWN-----RADNHFKDTYGFSIL- 1662
Query: 72 LAAWTGNVDIVRVLLCHGPSVPNVN------LMTKDNETALHCA----AQYGHTPVVSQL 121
DIV + P ++ ++N +A+ + + ++
Sbjct: 1663 --------DIVI----NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 122 LEHSCDPTIRNSR---HET-----ALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTL 173
EHS T R+ + T AL + E +++ GLI A A
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPAL-TLMEKAAFE----DLKSK-GLIPADATFA---- 1760
Query: 174 FPASPLHLASRNGHSLRRGPGANVQDSSG-YSALHHAA----LNGHKEIVELL-----LT 223
GHSL G Y+AL A + + +VE++
Sbjct: 1761 ------------GHSL------------GEYAALASLADVMSI---ESLVEVVFYRGMTM 1793
Query: 224 NEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETALHCAAQYGH 283
A D G S + A ++ RV + E + + G
Sbjct: 1794 QVAVPR--DELGRSNYGMIA----INPGRVAA------------SFSQEALQYVVERVGK 1835
Query: 284 TPVVSQLLEHSCDPTIRNSRHETALDLAAQY---GRLETVDTLVR 325
L+E N ++ QY G L +DT+
Sbjct: 1836 R--TGWLVEIVNY----NVENQ-------QYVAAGDLRALDTVTN 1867
Score = 32.7 bits (74), Expect = 0.29
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 30/87 (34%)
Query: 1 MEELQCVVFSVMGKDQDLLEAARNGNI---QVVEKILSQRAKRSGPLAREIVELLLTNEA 57
E LQ VV V + L+E N N+ Q V +G ++ L +
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIV-NYNVENQQYV--A-------AG----DLRAL----DT 1864
Query: 58 STNIVDTKGSSPLHLAAWTGNVDIVRV 84
TN+++ +DI+ +
Sbjct: 1865 VTNVLNFIK---------LQKIDIIEL 1882
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 3e-07
Identities = 73/493 (14%), Positives = 152/493 (30%), Gaps = 147/493 (29%)
Query: 2 EELQCV----VFSV-MGK---DQDLLEAARNGNIQVVEKILSQRAKRSGPLAREIVEL-- 51
++QC +F + + + +LE + Q+ + + R+ S + I +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQA 232
Query: 52 ----LLTNEASTN---IVDTKGSSPLHLAAWTGNV----DI-VRVLLCHGPSVPNVNLMT 99
LL ++ N ++ ++ ++ ++LL T
Sbjct: 233 ELRRLLKSKPYENCLLVLL-------NV--QNAKAWNAFNLSCKILL-----------TT 272
Query: 100 KDNETALHCAAQYGHTPVVSQLLEHSCDP-TIRNSRHETALDLAAQYGRLET-VDTLVRT 157
+ + T +S L+H T + L +Y L+ L
Sbjct: 273 RFKQVTD--FLSAATTTHIS--LDHHSMTLT-----PDEVKSLLLKY--LDCRPQDL--- 318
Query: 158 HPGLIQAYNARAQSTLFPASPLHLASRNGHSLRRGPGANVQDSSGYSALHHAALNGHKEI 217
P +T +P L+ S+R G + H + I
Sbjct: 319 -P-------REVLTT----NPRRLSII-AESIRDGL-----ATWDN--WKHVNCDKLTTI 358
Query: 218 VELLLTNEASTNIVDTKGSSPLH--LAAWTGNVDIVRVLLCHGPSVPNVNLMTKDNETAL 275
+E +S N+++ + L+ + + I +LL + +++ D +
Sbjct: 359 IE------SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS----LIWFDVIKSDVMVVV 408
Query: 276 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN 335
+ +Y S + + + TI S L+L + ++ H ++ YN
Sbjct: 409 NKLHKY------SLVEKQPKESTI--SIPSIYLELKVK------LENEYALHRSIVDHYN 454
Query: 336 ARAQSTLFPASPL------------HLAS-RNGHRSVVARLLQAGLDVN-----IRTASG 377
P HL + + R + R++ LD IR
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--LDFRFLEQKIR-HDS 511
Query: 378 TALHEAALCGKLEVVKTLLEHGADLR-----IIDSKH------NTVLDLLKQFPPHAVHD 426
T A ++ TL L+ I D+ N +LD L + + +
Sbjct: 512 T-----AWNASGSILNTLQ----QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 427 IST-IINPVMSYE 438
T ++ + E
Sbjct: 563 KYTDLLRIALMAE 575
>3noh_A Putative peptide binding protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Length = 139
Score = 29.8 bits (66), Expect = 0.82
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 357 RSVVARLLQAGLDVNIRTASGTALHEAALCGKLEV 391
S+ RL AG DV I+ SGT L A+ GK E
Sbjct: 78 DSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEA 112
>3qsl_A Putative exported protein; unknown, structural genomics,
PSI-biology, midwest center FO structural genomics,
MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella
bronchiseptica}
Length = 346
Score = 28.3 bits (63), Expect = 4.8
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 14/69 (20%)
Query: 345 ASPLHLASRNGHRSVVARLLQAGLDVNIRT-ASGTALHEAALCGKLEVVKTLLEH----- 398
PL +A G GLDV+I A G+ +A + G +VV EH
Sbjct: 47 YLPLTIAEVKGF------FKDEGLDVSIADFAGGSKALQAVVGGSADVVSGAFEHTLSLQ 100
Query: 399 --GADLRII 405
G R
Sbjct: 101 AKGQFYRAF 109
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination;
2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Length = 290
Score = 28.3 bits (64), Expect = 5.3
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 395 LLEHGADLRII 405
LL HGADLR++
Sbjct: 252 LLNHGADLRVV 262
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex,
recombination; HET: DNA; 2.80A {Vibrio cholerae o1
biovar eltor str}
Length = 320
Score = 28.0 bits (63), Expect = 6.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 395 LLEHGADLRII 405
LLE GAD+R +
Sbjct: 277 LLEVGADIRTV 287
>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron,
oxidoreductase; HET: NTD; 2.50A {Streptomyces
avermitilis} SCOP: d.32.1.3 d.32.1.3
Length = 381
Score = 27.9 bits (61), Expect = 7.2
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 207 HHAALNGHKEIVELLLTNEASTNIVDTKGSSPLHLAAWTGNVDIVRVLLCHGPSVPNVNL 266
+ NG +E +LTN S V T P + + HG V ++ +
Sbjct: 51 YSGPENGSRETASYVLTN-GSARFVLTSVIKPAT----PWGHFLADHVAEHGDGVVDLAI 105
Query: 267 MTKDNETALHCAAQYG 282
D A A ++G
Sbjct: 106 EVPDARAAHAYAIEHG 121
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic
substrate binding protein, selectivity helix, TR
membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Length = 326
Score = 27.7 bits (62), Expect = 8.2
Identities = 7/25 (28%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 8 VF--SVMGKDQDLLEAARNGNIQVV 30
+F +G+ D++E ++G +Q V
Sbjct: 50 LFPYGTLGESADIMEQTQDGILQFV 74
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine,
trap-transporter, periplasmic binding protein,
transport; HET: 4CS; 1.55A {Halomonas elongata} PDB:
2vpo_A* 3gyy_A
Length = 316
Score = 27.6 bits (62), Expect = 9.3
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 8 VF--SVMGKDQDLLEAARNGNIQVV 30
V+ +G+ D++E +NG +Q V
Sbjct: 36 VYRFGELGESDDIMEQTQNGILQFV 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.379
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,852,312
Number of extensions: 421957
Number of successful extensions: 4113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1518
Number of HSP's successfully gapped: 469
Length of query: 459
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 362
Effective length of database: 3,993,456
Effective search space: 1445631072
Effective search space used: 1445631072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.2 bits)