RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2185
(136 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 73.2 bits (180), Expect = 1e-17
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+D T LH AA GH VV LLE+ D +++ T L LAA+ G LE V L+
Sbjct: 5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE-KG 63
Query: 87 GLIQAYNARAQSTLFPASPLHLASRNGH 114
+ A + +PLHLA+RNG+
Sbjct: 64 ADVNARDKDGN------TPLHLAARNGN 85
Score = 68.6 bits (168), Expect = 7e-16
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
D T LH AA+ GH +V LLE D R+ T L LAA+ G L+ V L++ H
Sbjct: 37 DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLK-H 95
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ A + +PLHLA++NGH
Sbjct: 96 GADVNARDK------DGRTPLHLAAKNGH 118
Score = 62.0 bits (151), Expect = 2e-13
Identities = 25/57 (43%), Positives = 31/57 (54%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
KD T LH AA+ G+ VV LL+H D R+ T L LAA+ G LE V L+
Sbjct: 70 DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 35.1 bits (81), Expect = 0.003
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 57 IRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
R+ T L LAA G LE V L+ + + A + + +PLHLA++NGH
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGR------TPLHLAAKNGH 52
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 63.8 bits (156), Expect = 2e-14
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 24 MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ D +TALH AA+ G+ +V LLEH D ++ TAL LAA+ G LE V L+
Sbjct: 23 VNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLL 81
Score = 56.5 bits (137), Expect = 1e-11
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 33 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY 92
LH AA+ G+ +V LLE D + ++ +TAL LAA+ G LE V L+ +
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLL--------EH 50
Query: 93 NARAQSTLFP-ASPLHLASRNGH 114
A + + LHLA+RNG+
Sbjct: 51 GADVNAKDKDGNTALHLAARNGN 73
Score = 42.2 bits (100), Expect = 3e-06
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 59
KD TALH AA+ G+ +V LLEH D +++
Sbjct: 58 DKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 51.1 bits (123), Expect = 7e-10
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 31 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
TALH AA G +V LLE D + TAL +AA+ G LE + L+
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 31.1 bits (71), Expect = 0.026
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 21 ELLMLTKDNETALHCAAQYGHTPVVSQLL 49
++ +D TALH AA+ G+ V+ LL
Sbjct: 26 DINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 28.0 bits (63), Expect = 0.33
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 62 HETALDLAAQYGRLETVDTLV--RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
TAL AA GRLE V L+ + LH+A+ NG+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDG---------NTALHIAAENGN 46
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 54.1 bits (129), Expect = 1e-09
Identities = 29/81 (35%), Positives = 35/81 (43%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+D T LH AA G +V LLE DP RNS TALD AA+ GR+E V L+
Sbjct: 145 EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGL 204
Query: 87 GLIQAYNARAQSTLFPASPLH 107
L S +
Sbjct: 205 HLSLLKFNLEGVANANVSKRN 225
Score = 43.3 bits (101), Expect = 8e-06
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 27 KDNETALHCAAQYGHTP-----VVSQLLEH---SCDPTIRNSRHETALDLAAQYGRLETV 78
D +T LH AA G+ P V LLE +R+ T L AA G + V
Sbjct: 104 ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIV 163
Query: 79 DTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ L+ + + L A++NG
Sbjct: 164 ELLLEAGADPNSRNSYG-------VTALDPAAKNGR 192
Score = 36.0 bits (82), Expect = 0.002
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 31 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRL-----ETVDTLVRTH 85
LH AA G +V LL D +++ +T L LAA G E L+
Sbjct: 75 LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL--E 132
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGHR 115
G N +PLH A+ NG
Sbjct: 133 AGADLDVNNLRDEDG--NTPLHWAALNGDA 160
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 47.0 bits (112), Expect = 3e-08
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 69
+ T LH AA+YG +V LL+ D +R+S TALDLA
Sbjct: 14 GNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 26.2 bits (58), Expect = 1.6
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 48 LLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPL 106
LLEH D + T L LAA+YG LE V L++ + ++ + L
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGL------TAL 53
Query: 107 HLA 109
LA
Sbjct: 54 DLA 56
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 43.3 bits (103), Expect = 4e-07
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 59
D T LH AA+ GH VV LLE D R+
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 26.7 bits (60), Expect = 0.60
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 63 ETALDLAAQYGRLETVDTLVR 83
T L LAA+ G LE V L+
Sbjct: 3 NTPLHLAARNGHLEVVKLLLE 23
Score = 24.1 bits (53), Expect = 5.8
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 104 SPLHLASRNGH 114
+PLHLA+RNGH
Sbjct: 4 TPLHLAARNGH 14
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 41.4 bits (97), Expect = 4e-05
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
D T LH A GH VV LLE DPT+ + +T L+LA + G E V L R H
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSR-HSQ 172
Query: 88 LIQAYNARAQSTLFPASP 105
A A+ F P
Sbjct: 173 CHFELGANAKPDSFTGKP 190
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 36.8 bits (86), Expect = 1e-04
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTI 57
D T LH AA+ G+ +V LLEH D
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 26.1 bits (58), Expect = 1.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 63 ETALDLAAQYGRLETVDTLVRTHP 86
T L LAA+ G LE V L+
Sbjct: 3 NTPLHLAARNGNLELVKLLLEHGA 26
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 34.5 bits (80), Expect = 0.001
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTI 57
D T LH AA+ G+ VV LL+ D
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 24.5 bits (54), Expect = 3.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 64 TALDLAAQYGRLETVDTLVR 83
T L LAA+ G LE V L+
Sbjct: 4 TPLHLAAENGNLEVVKLLLD 23
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 36.8 bits (85), Expect = 0.002
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 20 DELLMLTKDNE-------TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 66
+ELL D + T LH AA G+ V LL+H+C+ IR++ TAL
Sbjct: 542 EELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595
Score = 26.8 bits (59), Expect = 4.3
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 36 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
A G+ ++ +LL+ DP I +S+ T L +AA G + V L++
Sbjct: 532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK 579
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 34.6 bits (80), Expect = 0.008
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 26 TKDN--ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
KD T LH A + V LL+ +P + N +T L +A E L+
Sbjct: 187 IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 246
Query: 84 THP 86
P
Sbjct: 247 NGP 249
Score = 29.2 bits (66), Expect = 0.56
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 24 MLTKDNETALHCAAQY--GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR--LETVD 79
+ T L A +V LL++ + I+NS E L L + + L+ +
Sbjct: 101 APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILK 160
Query: 80 TLV 82
L+
Sbjct: 161 LLI 163
Score = 27.7 bits (62), Expect = 2.1
Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 29/108 (26%)
Query: 25 LTKDNETALHCAAQYGH--TPVVSQLLEH----------------SCDPTIRNSRHETAL 66
D E LH + ++ L++ I++ T L
Sbjct: 137 KNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPL 196
Query: 67 DLAAQYGRLETVDTLV--RTHPGLIQAYNARAQSTLFPASPLHLASRN 112
A E V L+ +P N + +PLH+A N
Sbjct: 197 HYAVYNNNPEFVKYLLDLGANP------NLV---NKYGDTPLHIAILN 235
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 35.0 bits (80), Expect = 0.009
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 24 MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR-LETVDTLV 82
M+ K ET LH A +Y +VS LLE D IR++ T + +A R +E + L+
Sbjct: 447 MIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLL 506
Query: 83 RTHPGL 88
P L
Sbjct: 507 CHKPTL 512
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 34.6 bits (80), Expect = 0.010
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 20/113 (17%)
Query: 10 KSRDMETETEDELL-----MLTKDNE--TALHCAAQYGHT--PVVSQLLEHSCDPTIRNS 60
KSR+ E L+ + D+ + LH Q +V +L+ CDP +
Sbjct: 161 KSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDM 220
Query: 61 RHETALDLAAQYG--RLETVDTLVRTHPGL-IQAYNARAQSTLFPASPLHLAS 110
T L A + V L+ G+ I A N Q +PLH A+
Sbjct: 221 LGNTPLHSMATGSSCKRSLVLPLLIA--GISINARNRYGQ------TPLHYAA 265
Score = 30.8 bits (70), Expect = 0.19
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 31 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
T LH AA + + +L+ D +S T L L + V + +P
Sbjct: 259 TPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNP 314
Score = 26.9 bits (60), Expect = 3.4
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 31 TALHCAAQYG--HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG 73
T LH A +V LL RN +T L AA +
Sbjct: 224 TPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFN 268
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 30.7 bits (69), Expect = 0.19
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 28 DNETALHCAAQYG-HTPVVSQLLEHSCDPTIRNSRHETALDLAAQY 72
D T LH A ++ LL H D +I++++ E +D A +Y
Sbjct: 253 DGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKY 298
Score = 27.2 bits (60), Expect = 3.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 27 KDN--ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR 74
KDN E+ LH AA+YG + L++H + T L A + R
Sbjct: 186 KDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR 235
Score = 26.5 bits (58), Expect = 4.9
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 44 VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL-IQAYNARAQSTLFP 102
++ +L+ D I+++ +T L A + G LE++ L + I+ N
Sbjct: 106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNG-------- 157
Query: 103 ASPLHLASRNGHRFY 117
P+H+A + H F+
Sbjct: 158 CYPIHIAIK--HNFF 170
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 30.2 bits (68), Expect = 0.27
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 25 LTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
K N + LH A ++ + P+V LLE+ R+ T L ++ G + D L
Sbjct: 197 PDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISV--GYCKDYDILKLL 254
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRN 112
L + A+S + + LH + ++
Sbjct: 255 ---LEHGVDVNAKSYILGLTALHSSIKS 279
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 30.0 bits (67), Expect = 0.33
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
+NE LH AA T +V LL D + + + TAL A G ++TV V+
Sbjct: 60 ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 115
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 29.2 bits (65), Expect = 0.70
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 20 DELLMLT--------KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 71
+ELL L KD T LH A ++ L+ DP I N+ + L LA
Sbjct: 85 EELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVM 144
Query: 72 YGRLETVDTLVR 83
G ++ ++ L+
Sbjct: 145 MGDIKGIELLID 156
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 28.9 bits (65), Expect = 0.86
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 47 QLLEHSCDPT----IRNSRHETALDLAAQYGR 74
LL+ D I N + T L LAA+ GR
Sbjct: 238 SLLDKLRDSKELEVILNHQGLTPLKLAAKEGR 269
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 28.9 bits (64), Expect = 0.98
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 31 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
T +H AA+ G+ +V+ LL + D I + L+ A ++T+ ++
Sbjct: 180 TPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAII 231
Score = 28.5 bits (63), Expect = 1.2
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 31 TALHCAAQYGHTP----VVSQLLEHSCDPTIRNSRHETALDLAAQYG-RLETVDTLVRTH 85
T LH A+Q P +V +LLE D +N + ET L L A+ G E + TL+
Sbjct: 275 TPLHHASQ---APSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLI--- 328
Query: 86 PGLIQAYNARAQSTLFPASPLHLAS 110
+ + A L+ +PLH AS
Sbjct: 329 ---MLGADVNAADRLY-ITPLHQAS 349
>gnl|CDD|212829 cd11896, SH3_SNX33, Src Homology 3 domain of Sorting Nexin 33.
SNX33 interacts with Wiskott-Aldrich syndrome protein
(WASP) and plays a role in the maintenance of cell shape
and cell cycle progression. It modulates the shedding
and endocytosis of cellular prion protein (PrP(c)) and
amyloid precursor protein (APP). SNXs are Phox homology
(PX) domain containing proteins that are involved in
regulating membrane traffic and protein sorting in the
endosomal system. SNX33 also contains BAR and SH3
domains. SH3 domains are protein interaction domains
that bind to proline-rich ligands with moderate affinity
and selectivity, preferentially to PxxP motifs. They
play versatile and diverse roles in the cell including
the regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 55
Score = 26.5 bits (58), Expect = 1.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 87 GLIQAYNARAQSTLFPASPLHL 108
G +Q N+R ++ LFPAS + +
Sbjct: 34 GWLQGQNSRGETGLFPASYVEI 55
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
This model describes the P-type ATPase primarily
responsible for translocating cadmium ions (and other
closely-related divalent heavy metals such as cobalt,
mercury, lead and zinc) across biological membranes.
These transporters are found in prokaryotes and plants.
Experimentally characterized members of the seed
alignment include: SP|P37617 from E. coli, SP|Q10866
from Mycobacterium tuberculosis and SP|Q59998 from
Synechocystis PCC6803. The cadmium P-type ATPases have
been characterized as Type IB based on a phylogenetic
analysis which combines the copper-translocating ATPases
with the cadmium-translocating species. This model and
that describing the copper-ATPases (TIGR01511) are well
separated, and thus we further type the copper-ATPases
as IB1 and the cadmium-ATPases as IB2. Several sequences
which have not been characterized experimentally fall
just below trusted cutoff for both of these models
(SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from
Sulfolobus solfataricus, OMNI|NTL01CJ01098 from
Campylobacter jejuni, OMNI|NTL01HS01687 from
Halobacterium sp., GP|6899169 from Ureaplasma
urealyticum and OMNI|HP1503 from Helicobacter pylori)
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 536
Score = 28.4 bits (64), Expect = 1.3
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 12 RDMETETEDELLMLTKDNE-TALHCAAQYGHTPVVSQLL 49
+++ ++++MLT D A A + G V ++LL
Sbjct: 372 AELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELL 410
>gnl|CDD|223947 COG1015, DeoB, Phosphopentomutase [Carbohydrate transport and
metabolism].
Length = 397
Score = 28.0 bits (63), Expect = 1.5
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 22/49 (44%)
Query: 14 METETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 62
+E ED+LL++T D H DPT + H
Sbjct: 319 IENLREDDLLIITAD----------------------HGNDPTWGGTDH 345
>gnl|CDD|226638 COG4168, SapB, ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms].
Length = 321
Score = 27.4 bits (61), Expect = 2.8
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 102 PASPLHLAS-RNGHRFYLQQKVQSDF 126
P +PL AS G FY +Q DF
Sbjct: 31 PHAPLQGASLWQGWVFYFNGLLQWDF 56
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 26.6 bits (58), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 66
D LH A++ + +V+ LL H DP + +H+T L
Sbjct: 71 DGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPL 109
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 26.1 bits (58), Expect = 5.7
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 3 EYNNLKRKSRDMETETEDELLMLTKDNETAL 33
+ + +K R++ ++ DELL + + +TA+
Sbjct: 107 DLQRISKKCREIGSQLHDELLRVLNELQTAM 137
>gnl|CDD|218579 pfam05406, WGR, WGR domain. This domain is found in a variety of
polyA polymerases as well as the E. coli molybdate
metabolism regulator and other proteins of unknown
function. I have called this domain WGR after the most
conserved central motif of the domain. The domain is
found in isolation in proteins such as Rhizobium
radiobacter ych and is between 70 and 80 residues in
length. I propose that this may be a nucleic acid
binding domain.
Length = 83
Score = 25.3 bits (56), Expect = 5.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 109 ASRNGHRFYLQQKVQSDFCSSKVTRR 134
RN ++FY Q +++ F + +TRR
Sbjct: 14 IDRNSNKFYEIQVLETLFGNYSLTRR 39
>gnl|CDD|182218 PRK10063, PRK10063, putative glycosyl transferase; Provisional.
Length = 248
Score = 26.3 bits (58), Expect = 6.1
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 94 ARAQSTLFPASPLHLASRNGHRFYLQQKVQSDF 126
A Q+ FP S L R+ LQ KV SD+
Sbjct: 145 ASHQAIFFPVSGL-----KKWRYDLQYKVSSDY 172
>gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase.
Length = 486
Score = 26.3 bits (58), Expect = 6.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 50 EHSCDPTIRNSRHETALDLAAQYGRLETVDT 80
++ P IR + H AL A G L+ V T
Sbjct: 288 KYVMSPPIRPAGHGKALQAALSSGILQLVGT 318
>gnl|CDD|185627 PTZ00448, PTZ00448, hypothetical protein; Provisional.
Length = 373
Score = 26.1 bits (57), Expect = 6.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 6 NLKRKSRDMETETEDELLMLTKD 28
N KR +R ME +E+E L L +D
Sbjct: 342 NTKRNARKMEPISEEEFLELQQD 364
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 26.3 bits (58), Expect = 6.7
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 43 PVVSQLLEHSCDPTIRNSRHETALDLAAQYG-----RLETVDTLVRTHPGLIQAYNARAQ 97
P+V LL+ P H L +YG RL +VD + P LI+ R Q
Sbjct: 41 PIVGNLLQLGPLP------HRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLR-Q 93
Query: 98 STLFPASPLHLAS 110
+F + P LA+
Sbjct: 94 DDVFASRPRTLAA 106
>gnl|CDD|204301 pfam09735, Nckap1, Membrane-associated apoptosis protein.
Expression of this protein was found to be markedly
reduced in patients with Alzheimer's disease. It is
involved in the regulation of actin polymerisation in
the brain as part of a WAVE2 signalling complex.
Length = 1118
Score = 26.2 bits (58), Expect = 6.7
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 45 VSQLLEHSCDPTIRNSRHETALDLA-AQYGRL----ETVDTLVRTHPGLIQAY 92
V LL H+ + R+SR +T D A L E + +LVR + +IQ Y
Sbjct: 373 VLWLLRHAGNVPSRSSRGKTDEDFADPHIPELLFYMEELRSLVRKYIAVIQRY 425
>gnl|CDD|177446 PHA02663, PHA02663, hypothetical protein; Provisional.
Length = 172
Score = 25.7 bits (56), Expect = 7.9
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 34 HCAAQYGHTP--VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLET 77
+ H P +VS LLE P R TA++L AQ GRL T
Sbjct: 62 RANPENSHIPAALVSALLEAPTSP----GRMVTAVELCAQMGRLWT 103
>gnl|CDD|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional.
Length = 457
Score = 25.9 bits (57), Expect = 8.3
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 44 VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLF 101
+ + LE P T L LA V +V H G IQ + + F
Sbjct: 392 IAADQLEAIFTPYFTTKAEGTGLGLA-------VVHNIVEQHGGTIQVASQEGKGATF 442
>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane [Transport and
binding proteins, Cations and iron carrying compounds,
Energy metabolism, Other].
Length = 582
Score = 25.9 bits (57), Expect = 8.4
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 7/30 (23%)
Query: 29 NETALHCAAQYGHTPVVSQLLEHSCDPTIR 58
ET + +YG TP + ++
Sbjct: 358 KETKGYLKGEYGRTPA-------PINAELQ 380
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 25.8 bits (57), Expect = 9.4
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 68 LAAQY--GRLETVDTLVRTHPGLIQAYNARAQ 97
+A QY RL D L RT G IQ + R
Sbjct: 510 VAKQYIPERLVVRDALPRTPSGKIQKFRLREM 541
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.128 0.369
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,456,752
Number of extensions: 536228
Number of successful extensions: 548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 533
Number of HSP's successfully gapped: 71
Length of query: 136
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 49
Effective length of database: 7,078,804
Effective search space: 346861396
Effective search space used: 346861396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)