RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2185
(136 letters)
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 78.0 bits (193), Expect = 2e-18
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+NE LH AA T +V LL D + + + TAL A G ++TV V+
Sbjct: 59 LLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK-K 117
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ Y T + A
Sbjct: 118 NWRLMFYGKTGWKT-----SFYHAVMLND 141
Score = 67.6 bits (166), Expect = 1e-14
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 9/89 (10%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+A + A + +V LL + + L AA + V L+
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLEDTKIVKILL-FS 84
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
++ + + L+ A +G+
Sbjct: 85 GLDDSQFDDKGN------TALYYAVDSGN 107
Score = 63.7 bits (156), Expect = 3e-13
Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 15/90 (16%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET-ALDLAAQYGRLETVDTLVRT 84
+ +H + GH ++ LL++ NS + LA +E + L
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF-- 215
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
S
Sbjct: 216 --------KYDIN----IYSANLENVLLDD 233
Score = 61.8 bits (151), Expect = 1e-12
Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 10/91 (10%)
Query: 27 KDN---ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
+T+ + A +VS L + + + + G ++ + L+
Sbjct: 124 YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAIL-LSCIHITIKNGHVDMMILLL- 181
Query: 84 THPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ N P + LA N
Sbjct: 182 DYMTST---NTNNSLLFIPD--IKLAIDNKD 207
Score = 47.9 bits (115), Expect = 1e-07
Identities = 4/58 (6%), Positives = 13/58 (22%), Gaps = 8/58 (13%)
Query: 26 TKDNET-ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ A ++ L ++ + +A E ++
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALFKYDINI-------YSANLENVLLDDAEIAKMII 241
Score = 45.2 bits (108), Expect = 9e-07
Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 10/79 (12%)
Query: 36 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 95
+ + L S D + +A A + V TL+ L
Sbjct: 6 RINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLL-NAGALKNLLENE 63
Query: 96 AQSTLFPASPLHLASRNGH 114
PLH A+
Sbjct: 64 --------FPLHQAATLED 74
Score = 39.0 bits (92), Expect = 1e-04
Identities = 5/52 (9%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 79
+ +A + ++E + + + LD+ E +
Sbjct: 220 NIYSANLENVLLDDAEIAKMIIEKHVEYKSDS--YTKDLDIVKNNKLDEIIS 269
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 75.9 bits (188), Expect = 5e-18
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ + A QYG +L+E D + + T L AA R++ V + +
Sbjct: 7 DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI-SKG 65
Query: 87 GLIQAYNARAQSTLFPASPLHLASRNGH 114
++ ST PLH A+R GH
Sbjct: 66 AIVDQLGGDLNST-----PLHWATRQGH 88
Score = 69.8 bits (172), Expect = 9e-16
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 27 KDNE---TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
+ T LH A + GH +V QL+++ DP++ + + + LAAQ+G V L+
Sbjct: 71 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI- 129
Query: 84 THPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
+ + +PL A+ H
Sbjct: 130 AKGQDVDMMDQNGM------TPLMWAAYRTHS 155
Score = 65.9 bits (162), Expect = 2e-14
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG-RLETVDTLVRT 84
+ + +H AAQ+GHT +V+ L+ D + + T L AA ++ L+ T
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL-T 164
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ + ++T LH A G+
Sbjct: 165 FNVSVNLGDKYHKNT-----ALHWAVLAGN 189
Score = 65.9 bits (162), Expect = 3e-14
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 27 KDN---ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
D TALH A G+T V+S LLE + +N + E+ALDLA Q + ++ L
Sbjct: 172 GDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230
Score = 65.1 bits (160), Expect = 6e-14
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRT 84
K+N T LH AA +V + T L A + G L V L++
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK- 97
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ + S +HLA++ GH
Sbjct: 98 YGADPSLIDGEGC------SCIHLAAQFGH 121
Score = 63.6 bits (156), Expect = 2e-13
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 13/93 (13%)
Query: 26 TKDNETALHCAAQYGHTP-VVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVR 83
++ T L AA H+ LL + + + H TAL A G + L+
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198
Query: 84 THPGLIQAYNARAQS--TLFPASPLHLASRNGH 114
+ +A+ + L LA + +
Sbjct: 199 AGANV----DAQNIKGES-----ALDLAKQRKN 222
Score = 41.3 bits (98), Expect = 2e-05
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH 51
E+AL A Q + +++ L E
Sbjct: 207 NIKGESALDLAKQRKNVWMINHLQEA 232
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 77.2 bits (191), Expect = 6e-18
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+N +H AA+ G T V +L+E PTI+N TAL LA ++G ++T L
Sbjct: 17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS-V 75
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ ++ + P+HLA
Sbjct: 76 GEVHSLWHGQ--------KPIHLAVMANK 96
Score = 75.7 bits (187), Expect = 2e-17
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 8/96 (8%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
K + LH A V + +E D + ++ H L L+ + + L+
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELL-QK 266
Query: 86 PGLIQAYNARAQS-------TLFPASPLHLASRNGH 114
+ + + + A+
Sbjct: 267 TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302
Score = 71.1 bits (175), Expect = 1e-15
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 26 TKDNETALHCAAQYG--HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
+TALH G + ++ L++ PT ++ ET L A ++ E +D ++
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMD 194
Query: 84 THPGLIQAY-NARAQS--TLFPASPLHLASRNGH 114
T P + + + LH A
Sbjct: 195 TVPSKSSLRLDYANKQGNS-----HLHWAILINW 223
Score = 65.7 bits (161), Expect = 7e-14
Identities = 8/102 (7%), Positives = 24/102 (23%), Gaps = 20/102 (19%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE-------------TALDLAAQY 72
++ L+ + + + +LL+ + I+ + + AA
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300
Query: 73 GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ E + L + +
Sbjct: 301 SKQEVLQLLQ-EKLDEVVRSLNTGA------GGAVKRKKKAA 335
Score = 61.4 bits (150), Expect = 3e-12
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 12/94 (12%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLE-----HSCDPTIRNSRHETALDLAAQYGRLETVDT 80
K +ET L A ++ + + +++ S N + + L A +
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229
Query: 81 LVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
V + + PL+L+ R
Sbjct: 230 FV-EMGIDVNMEDNEHT------VPLYLSVRAAM 256
Score = 61.0 bits (149), Expect = 3e-12
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 23/91 (25%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ +H A T +V L+E + R + L + E +
Sbjct: 81 LWHGQKPIHLAVMANKTDLVVALVEGA------KERGQMPESLLNECDEREVNEIGS--- 131
Query: 86 PGLIQAYNARAQS--TLFPASPLHLASRNGH 114
+ + T LH G
Sbjct: 132 -------HVKHCKGQT-----ALHWCVGLGP 150
Score = 58.3 bits (142), Expect = 3e-11
Identities = 6/60 (10%), Positives = 12/60 (20%)
Query: 23 LMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
L + AA V+ L E + + + +
Sbjct: 284 LPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKL 343
Score = 49.9 bits (120), Expect = 3e-08
Identities = 4/44 (9%), Positives = 9/44 (20%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 69
+ V L S R+ + ++
Sbjct: 320 LNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 24/77 (31%)
Query: 47 QLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLV--------RTHPGLIQAYNARAQ 97
+ + + + + + +AA+ G+ + V L+ + G
Sbjct: 4 SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC--------- 54
Query: 98 STLFPASPLHLASRNGH 114
+ LHLA + G
Sbjct: 55 ------TALHLACKFGC 65
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 72.8 bits (180), Expect = 1e-17
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
ET LH A+ G P V LL++ DP +++ T L A +G L+ V+ L+ H
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QHK 66
Query: 87 GLIQAYNARAQ--STLFPASPLHLASRNGH 114
L+ N + PLH A++NGH
Sbjct: 67 ALV---NTTGYQNDS-----PLHDAAKNGH 88
Score = 65.1 bits (160), Expect = 9e-15
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 27 KDN--ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
KD+ T LH A +GH VV LL+H ++++ L AA+ G ++ V L+
Sbjct: 39 KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS- 97
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
+ A N P+ +
Sbjct: 98 YGASRNAVNIFGL------RPVDYTDDESMK 122
Score = 64.8 bits (159), Expect = 1e-14
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
N++ LH AA+ GH +V LL + N +D + +
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130
Score = 37.0 bits (87), Expect = 3e-04
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 23/65 (35%)
Query: 58 RNSRHETALDLAAQYGRLETVDTL--------VRTHPGLIQAYNARAQSTLFPASPLHLA 109
N R ET L +A+ G + +V+ L V+ H G +PLH A
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW---------------TPLHEA 50
Query: 110 SRNGH 114
+GH
Sbjct: 51 CNHGH 55
Score = 35.9 bits (84), Expect = 0.001
Identities = 0/26 (0%), Positives = 5/26 (19%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH 51
+ ++ ++
Sbjct: 106 NIFGLRPVDYTDDESMKSLLLLPEKN 131
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 75.2 bits (186), Expect = 2e-17
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
T D+ + LH A GH V LL+H + T L A G + V+ L+
Sbjct: 89 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL--- 145
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ A Q ASP+H A+R GH
Sbjct: 146 -----QHGASVQPESDLASPIHEAARRGH 169
Score = 72.1 bits (178), Expect = 3e-16
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
D + +H AA+ GH V+ L+ + + + S T L LA + + V L+
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-- 211
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
A SPLH R
Sbjct: 212 ------SGADVNQGKGQDSPLHAVVRTAS 234
Score = 68.7 bits (169), Expect = 4e-15
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ + +H AA +GH + L+ I + H + L A G L V L+
Sbjct: 56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL--- 112
Query: 86 PGLIQAYNARAQ---STLFPASPLHLASRNGH 114
AQ T +PL A +G
Sbjct: 113 -------KHGAQVNGVTADWHTPLFNACVSGS 137
Score = 67.5 bits (166), Expect = 1e-14
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 8/89 (8%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
T L+ A + V +LLE D ++ L + E L+
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASEELACLLM-DF 244
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
QA NA + P+ L
Sbjct: 245 GADTQAKNAEGK------RPVELVPPESP 267
Score = 59.8 bits (146), Expect = 6e-12
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 78
K ++ LH + + L++ D +N+ + ++L L +
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271
Score = 46.7 bits (112), Expect = 3e-07
Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 14/89 (15%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
D G LL + + + + AA +G ++ L+
Sbjct: 30 GMDGSKPAGPRDFPGIR-----LLSNPLMGDAVSDW--SPMHEAAIHGHQLSLRNLIS-Q 81
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ A SPLH A GH
Sbjct: 82 GWAVNIITADHV------SPLHEACLGGH 104
Score = 46.3 bits (111), Expect = 4e-07
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 36 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 95
+ + H S L+ + + + +D + G + + ++P + A +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGK-QGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60
Query: 96 AQSTLFPASPLHLASRNGH 114
SP+H A+ +GH
Sbjct: 61 --------SPMHEAAIHGH 71
Score = 32.1 bits (74), Expect = 0.035
Identities = 2/26 (7%), Positives = 6/26 (23%), Gaps = 2/26 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH 51
+ + + + LE
Sbjct: 252 NAEGKRPVELVPPESPLAQL--FLER 275
Score = 31.3 bits (72), Expect = 0.059
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 68 LAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
+ + + LV + + + + Q + + P G R
Sbjct: 1 MGSSHHHHHHSSGLVP-RGSHMASMDGK-QGGMDGSKPAGPRDFPGIR 46
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 73.7 bits (182), Expect = 3e-17
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR--T 84
+T LH A + LL CDP +R+ R T L LA + G L +V L + T
Sbjct: 43 NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 102
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
P L A + + LHLAS +G+
Sbjct: 103 TPHLHSILKATNYNGH---TCLHLASIHGY 129
Score = 64.1 bits (157), Expect = 1e-13
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 26 TKDNETALHCAAQYGHTP----VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
T+D ++ LH A + V+ Q+ +N+ +T L LA + E + L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ + + R +PLHLA G
Sbjct: 65 LG-AGCDPELRDFRGN------TPLHLACEQGC 90
Score = 63.7 bits (156), Expect = 2e-13
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTI------RNSRHETALDLAAQYGRLETVD 79
T LH A + G V L + P + N T L LA+ +G L V+
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134
Query: 80 TLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
LV + AQ + LHLA +
Sbjct: 135 LLVS------LGADVNAQEPCNGRTALHLAVDLQNP 164
Score = 63.0 bits (154), Expect = 3e-13
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRT 84
+ T LH A+ +G+ +V L+ D + + TAL LA + V L++
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173
Query: 85 HPGL-IQAYNARAQSTLFPASPLHLASRNGH 114
+ Y SP L
Sbjct: 174 GADVNRVTYQGY--------SPYQLTWGRPS 196
Score = 58.7 bits (143), Expect = 1e-11
Identities = 12/56 (21%), Positives = 18/56 (32%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ TALH A + +VS LL+ D + + L L
Sbjct: 149 CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 204
Score = 49.9 bits (120), Expect = 2e-08
Identities = 6/54 (11%), Positives = 13/54 (24%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 79
T + T + QL + + + E + E +
Sbjct: 181 TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234
Score = 25.6 bits (57), Expect = 6.4
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 104 SPLHLASRNGHRFYLQQKVQ 123
S LHLA + + + ++
Sbjct: 10 SFLHLAIIHEEKALTMEVIR 29
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 73.4 bits (181), Expect = 4e-17
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
K +TALH AA G+ +V LL +RN + A D+A +
Sbjct: 138 KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQ-GTD 196
Query: 87 GLIQAYNARAQSTLFPASPLHLASRNGH 114
+ NA + H
Sbjct: 197 AVRTLSNAEDY------LDDEDSDLEHH 218
Score = 71.5 bits (176), Expect = 2e-16
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ + LH AA+ G+ + + L++ + TAL A G + V+ L T
Sbjct: 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLF-TQ 128
Query: 86 PG-LIQAYNARAQSTLFPASPLHLASRNGH 114
P + N + LH A+ G+
Sbjct: 129 PNIELNQQNKLGD------TALHAAAWKGY 152
Score = 63.8 bits (156), Expect = 1e-13
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
K TAL+ A GH +V L + +N +TAL AA G + V L+
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Query: 85 HPGLIQAYNARAQ--STLFPASPLHLASRNGHR 115
+ R +A+
Sbjct: 163 GART----DLRNIEKKL-----AFDMATNAACA 186
Score = 61.1 bits (149), Expect = 2e-12
Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 12/89 (13%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
K + + A +L D +T GR +
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI------- 61
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
P A A + PLH A++ G+
Sbjct: 62 PSNYVAEQAESIDN-----PLHEAAKRGN 85
Score = 56.1 bits (136), Expect = 9e-11
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 19/115 (16%)
Query: 7 LKRKSRDMETETEDELL-------MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 59
+ R E T DEL +T ++T G T ++
Sbjct: 16 VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA----- 70
Query: 60 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ L AA+ G L + + + + + +A ST L+ A GH
Sbjct: 71 ESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLD-KAGST-----ALYWACHGGH 118
Score = 49.9 bits (120), Expect = 2e-08
Identities = 4/49 (8%), Positives = 13/49 (26%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRL 75
+ + A A ++ + T+ N+ + +
Sbjct: 171 IEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 70.5 bits (174), Expect = 5e-17
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+KD T LH AA+ GH V +LL D R+ T L LAA+ G E V L+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AK 64
Query: 86 PGLIQAYNARAQ--STLFPASPLHLASRNGH 114
+ NAR++ +T P HLA +NGH
Sbjct: 65 GADV---NARSKDGNT-----PEHLAKKNGH 87
Score = 61.6 bits (151), Expect = 1e-13
Identities = 21/56 (37%), Positives = 25/56 (44%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
KD T LH AA+ GH +V LL D R+ T LA + G E V L
Sbjct: 40 KDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95
Score = 47.4 bits (114), Expect = 4e-08
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 66
+KD T H A + GH +V L D R+
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 71.7 bits (177), Expect = 6e-17
Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 17/93 (18%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
++ T L AA +G VV LL++ DP + E+AL LA G + V L
Sbjct: 34 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML----- 88
Query: 87 GLIQA---YNARAQ--STLFPASPLHLASRNGH 114
+ N T PL A H
Sbjct: 89 --LDCGVDVNEYDWNGGT-----PLLYAVHGNH 114
Score = 70.1 bits (173), Expect = 2e-16
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 17/92 (18%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
N ++H A G ++ +E + T L AA +G++ V+ L
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL------ 55
Query: 88 LIQA---YNARAQ--STLFPASPLHLASRNGH 114
+Q + + L LA G+
Sbjct: 56 -LQNGADPQLLGKGRES-----ALSLACSKGY 81
Score = 69.0 bits (170), Expect = 7e-16
Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 23/97 (23%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
K E+AL A G+T +V LL+ D + T L A ++ V L+
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125
Query: 83 -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
T G + LA G+
Sbjct: 126 ADPTIETDSG----------YN-----SMDLAVALGY 147
Score = 63.9 bits (157), Expect = 6e-14
Identities = 16/57 (28%), Positives = 20/57 (35%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ T L A H V LLE DPTI ++DLA G +
Sbjct: 99 DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
Score = 42.0 bits (100), Expect = 7e-06
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCD 54
T ++ A G+ V + H
Sbjct: 132 TDSGYNSMDLAVALGYRSVQQVIESHLLK 160
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 73.2 bits (181), Expect = 6e-17
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
T D+ + LH A GH V LL+H + T L A G + V+ L+
Sbjct: 33 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL--- 89
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ A Q ASP+H A+R GH
Sbjct: 90 -----QHGASVQPESDLASPIHEAARRGH 113
Score = 73.2 bits (181), Expect = 7e-17
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
D + +H AA+ GH V+ L+ + + + S T L LA + + V L+
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL--- 154
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
A SPLH +R
Sbjct: 155 -----ESGADVNQGKGQDSPLHAVARTAS 178
Score = 67.1 bits (165), Expect = 2e-14
Identities = 10/89 (11%), Positives = 22/89 (24%), Gaps = 9/89 (10%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
K ++ LH A+ + L++ D +N+ + ++L +
Sbjct: 163 GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFL-ER 219
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
G H
Sbjct: 220 EGPPSLMQLCRL------RIRKCFGIQQH 242
Score = 66.3 bits (163), Expect = 2e-14
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 30 ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLI 89
+ +H AA +GH + L+ I + H + L A G L V L++ H +
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQV 62
Query: 90 QAYNARAQ--STLFPASPLHLASRNGH 114
N T PL A +G
Sbjct: 63 ---NGVTADWHT-----PLFNACVSGS 81
Score = 57.4 bits (140), Expect = 4e-11
Identities = 3/57 (5%), Positives = 12/57 (21%), Gaps = 2/57 (3%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ + + + LE P++ + ++
Sbjct: 196 NAEGKRPVELVPPESP--LAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250
Score = 39.3 bits (93), Expect = 1e-04
Identities = 3/27 (11%), Positives = 5/27 (18%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHS 52
C H + +L
Sbjct: 227 QLCRLRIRKCFGIQQHHKITKLVLPED 253
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 74.5 bits (184), Expect = 6e-17
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ T LH AA+ V LL++ + + T L LAAQ G E V L+
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
N +S L +PLHL ++ GH
Sbjct: 269 ANG----NLGNKSGL---TPLHLVAQEGH 290
Score = 74.5 bits (184), Expect = 8e-17
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ T LH A+ GH P+V LL+ P + N + ET L +AA+ G E L++
Sbjct: 11 GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70
Query: 86 PGLIQAYNARAQ--STLFPASPLHLASRNGH 114
+ NA+A+ T PLH A+R GH
Sbjct: 71 AKV----NAKAKDDQT-----PLHCAARIGH 92
Score = 74.1 bits (183), Expect = 1e-16
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ T LH AAQ GH +V+ LL + + N T L L AQ G + D L++
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301
Query: 86 PGLIQAYNARAQS--TLFPASPLHLASRNGH 114
+ +A + T PLH+AS G+
Sbjct: 302 VMV----DATTRMGYT-----PLHVASHYGN 323
Score = 73.7 bits (182), Expect = 2e-16
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
T+ T LH A+ YG+ +V LL+H D + + L AAQ G + V L++
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 86 PGLIQAYNARAQ--STLFPASPLHLASRNGH 114
N + +T PL +A R G+
Sbjct: 368 ASP----NEVSSDGTT-----PLAIAKRLGY 389
Score = 72.9 bits (180), Expect = 3e-16
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
K T LH AQ GH PV L++H T L +A+ YG ++ V L++
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ NA+ T SPLH A++ GH
Sbjct: 335 ADV----NAK---TKLGYSPLHQAAQQGH 356
Score = 71.8 bits (177), Expect = 6e-16
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
KD++T LHCAA+ GHT +V LLE++ +P + + T L +AA+ G +ETV L+
Sbjct: 77 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
T +PLH+A++ G
Sbjct: 137 ASQ----ACM---TKKGFTPLHVAAKYGK 158
Score = 71.8 bits (177), Expect = 7e-16
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
T T LH AA+ GH V LLE + T L +AA+YG++ + L+
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL-ER 168
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
A +PLH+A + +
Sbjct: 169 DAHPNAAGKNGL------TPLHVAVHHNN 191
Score = 71.8 bits (177), Expect = 7e-16
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
TK T LH AA+YG V LLE P T L +A + L+ V L+
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 202
Query: 86 PGLIQAYNARAQS--TLFPASPLHLASRNGH 114
++ A + T PLH+A++
Sbjct: 203 GSP----HSPAWNGYT-----PLHIAAKQNQ 224
Score = 71.0 bits (175), Expect = 1e-15
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 19/95 (20%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
K+ T LH A + + +V LL P T L +AA+ ++E +L+
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL--- 232
Query: 86 PGLIQAYNA------RAQSTLFPASPLHLASRNGH 114
Y T PLHLA++ GH
Sbjct: 233 -----QYGGSANAESVQGVT-----PLHLAAQEGH 257
Score = 70.2 bits (173), Expect = 2e-15
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
ET LH AA+ GHT V LL++ + +T L AA+ G V L+
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL--- 100
Query: 86 PGLIQAYNARA-QSTLFPASPLHLASRNGH 114
NA +T +PLH+A+R GH
Sbjct: 101 -----ENNANPNLATTAGHTPLHIAAREGH 125
Score = 69.8 bits (172), Expect = 3e-15
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
TK + LH AAQ GHT +V+ LL++ P +S T L +A + G + D L
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397
Score = 39.4 bits (93), Expect = 1e-04
Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 26 TKDNETALHCAAQYGHTPVV---SQLLEHSCDPTIRNSRHETALDLA 69
+ D T L A + G+ V + + + + + + +
Sbjct: 374 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420
Score = 35.2 bits (82), Expect = 0.004
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 51 HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS 110
T L +A+ G L V L++ N + + +PLH+A+
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVE------TPLHMAA 55
Query: 111 RNGH 114
R GH
Sbjct: 56 RAGH 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 71.3 bits (176), Expect = 9e-17
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ T L A+ +G V LLE DP I E+AL LA+ G + V L+
Sbjct: 34 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV 93
Query: 87 GLIQAYNARAQ--STLFPASPLHLASRNGH 114
+ N T PL A R H
Sbjct: 94 DI----NIYDWNGGT-----PLLYAVRGNH 114
Score = 67.8 bits (167), Expect = 2e-15
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 19/95 (20%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
K+ E+AL A+ G+T +V LLE D I + T L A + ++ V+ L+
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL--- 122
Query: 86 PGLIQAYNA------RAQSTLFPASPLHLASRNGH 114
A A + T P+ LA G+
Sbjct: 123 -----ARGADLTTEADSGYT-----PMDLAVALGY 147
Score = 64.7 bits (159), Expect = 3e-14
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 31 TALHCAAQYGHTPVVSQLLEHSCD-PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLI 89
++H A G + + L + + R T L A+ +G +ETV L +
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL-------L 56
Query: 90 QA---YNARAQ--STLFPASPLHLASRNGH 114
+ + A+ + L LAS G+
Sbjct: 57 EWGADPHILAKERES-----ALSLASTGGY 81
Score = 63.6 bits (156), Expect = 8e-14
Identities = 14/57 (24%), Positives = 19/57 (33%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ T L A + H V LL D T T +DLA G + +
Sbjct: 99 DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
Score = 43.6 bits (104), Expect = 3e-06
Identities = 6/34 (17%), Positives = 9/34 (26%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 59
T + A G+ V + H N
Sbjct: 132 ADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 72.5 bits (179), Expect = 1e-16
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ ETALH AA+Y + +LLE S D I+++ T L A L+R
Sbjct: 55 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 87 GLIQAYNARAQ--STLFPASPLHLASRNGH 114
+ +AR +T PL LA+R
Sbjct: 115 TDL---DARMHDGTT-----PLILAARLAV 136
Score = 68.3 bits (168), Expect = 5e-15
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 17/94 (18%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
++ALH AA + LL++ + ++N+R ET L LAA+ G ET L
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL---- 209
Query: 86 PGLIQAY---NARAQS--TLFPASPLHLASRNGH 114
+ + + P +A H
Sbjct: 210 ---LDHFANRDITDHMDRL-----PRDIAQERMH 235
Score = 64.0 bits (157), Expect = 2e-13
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
D T L AA+ ++ L+ D + ++AL AA ++ L+ +
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KN 179
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
N R + +PL LA+R G
Sbjct: 180 GANKDMQNNREE------TPLFLAAREGS 202
Score = 63.3 bits (155), Expect = 3e-13
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
ET L AA+ G LL+H + I + D+A + + V L
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 61.7 bits (151), Expect = 1e-12
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
T LH A V L+ + + D R T L LAA+ ++ L+
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-N 145
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ A + + S LH A+ +
Sbjct: 146 SHADVNAVDDLGK------SALHWAAAVNN 169
Score = 52.1 bits (126), Expect = 4e-09
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 25/106 (23%)
Query: 26 TKDNETALHCAAQYGHTP-------------VVSQLLEHSCDPTIRNSRH---ETALDLA 69
D T L A+ G V+S + + N ETAL LA
Sbjct: 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS--LHNQTDRTGETALHLA 64
Query: 70 AQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
A+Y R + L+ + + +PLH A +
Sbjct: 65 ARYSRSDAAKRLL-EASADANIQDNMGR------TPLHAAVSADAQ 103
Score = 36.3 bits (85), Expect = 0.001
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEH 51
+ A + H +V L
Sbjct: 221 HMDRLPRDIAQERMHHDIVRLLDLE 245
Score = 26.3 bits (59), Expect = 3.7
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Query: 54 DPTIRNSRHETALDLAAQYGRLETVDTLVRT--HPGLIQ------AYNARAQSTLFPASP 105
D +R T L +A+ G P +I A + Q+ +
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA-SLHNQTDRTGETA 60
Query: 106 LHLASRNGH 114
LHLA+R
Sbjct: 61 LHLAARYSR 69
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 71.7 bits (177), Expect = 2e-16
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
++D T L AA+ H V L++ +++ T L LAA+ G E V L+
Sbjct: 41 SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Query: 86 PGLIQAYNARAQ--STLFPASPLHLASRNGH 114
+ N + T P+ A+ H
Sbjct: 101 QMDV---NCQDDGGWT-----PMIWATEYKH 123
Score = 70.1 bits (173), Expect = 8e-16
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ LH AA G + LL CD N ++ L +AA+ R + V +
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS-R 199
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ N + +PL AS N
Sbjct: 200 DSDVTLKNKEGE------TPLQCASLNSQ 222
Score = 69.7 bits (172), Expect = 1e-15
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
++ + LH AA+ GH + L++ + + T L AA+ LE V L+
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-KA 66
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
L+ +A + LHLA++ GH
Sbjct: 67 GALVDPKDAEGS------TCLHLAAKKGH 89
Score = 69.0 bits (170), Expect = 2e-15
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
T + A +Y H +V LL D IR++ L AA G ++ + L+
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL-AA 166
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ A N SPLH+A+R
Sbjct: 167 KCDLHAVNIHGD------SPLHIAARENR 189
Score = 64.7 bits (159), Expect = 6e-14
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
+ T LH AA+ GH VV LL + D ++ T + A +Y ++ V L+ +
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL-S 132
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
I + LH A+ +G
Sbjct: 133 KGSDINIRDNEEN------ICLHWAAFSGC 156
Score = 63.2 bits (155), Expect = 3e-13
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
++ LH AA+ V L D T++N ET L A+ ++ + + +
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231
Score = 38.5 bits (91), Expect = 2e-04
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCD 54
K+ ET L CA+ Q+ + D
Sbjct: 207 NKEGETPLQCASLNSQVWSALQMSKALQD 235
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 72.9 bits (180), Expect = 2e-16
Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 14/103 (13%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
T LH AA V S LL H DPT+ N ++A+D+A E + + H
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180
Query: 86 PGLIQAYNARAQSTLFP--------------ASPLHLASRNGH 114
L A A + LH A + H
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH 223
Score = 68.3 bits (168), Expect = 8e-15
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
K LH A YGH V LL+H + T L AA R+E L+ +H
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL-SH 146
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
N + S + +A
Sbjct: 147 GADPTLVNCHGK------SAVDMAPTPEL 169
Score = 68.3 bits (168), Expect = 8e-15
Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
T LH AA Y +V LL+H D ++ L A YG E + L+ H
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLL-KH 113
Query: 86 PGLIQAYNARAQS--TLFPASPLHLASRNGH 114
+ NA T PLH A+
Sbjct: 114 GACV---NAMDLWQFT-----PLHEAASKNR 136
Score = 63.3 bits (155), Expect = 5e-13
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 26/100 (26%)
Query: 26 TKDNETALHCAAQYGHTP---VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ +ETALHCA H V LL + +N T L +AA+ + ++ L
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267
Query: 83 --------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
G + LH A+ GH
Sbjct: 268 KHGAKMNALDSLGQ---------------TALHRAALAGH 292
Score = 62.5 bits (153), Expect = 1e-12
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
KD T LH AA+ H V+ L +H +S +TAL AA G L+T L+
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300
Score = 61.0 bits (149), Expect = 3e-12
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+TALH AA GH LL + DP+I + + TA + E V ++ +
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQIL-SE 330
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNG 113
+ L AS+ G
Sbjct: 331 STPM---RTSDVDY-----RLLEASKAG 350
Score = 60.2 bits (147), Expect = 7e-12
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 24/98 (24%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHETALDLAAQYGRLETVDTLV-- 82
+ + L AA+ G+ + LL + + + R T L LAA Y R+ V L+
Sbjct: 21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80
Query: 83 ------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ GL PLH A GH
Sbjct: 81 GADVHAKDKGGL---------------VPLHNACSYGH 103
Score = 47.9 bits (115), Expect = 1e-07
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 15/99 (15%)
Query: 21 ELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG---RLET 77
E L + L AA+ V + L + HETAL A R +
Sbjct: 171 ERLTYEFKGHSLLQ-AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQV 229
Query: 78 VDTLVRTHPGLIQAYNARAQS--TLFPASPLHLASRNGH 114
+ L+R + N + + T PLH+A+ H
Sbjct: 230 AELLLRKGANV----NEKNKDFMT-----PLHVAAERAH 259
Score = 38.6 bits (91), Expect = 2e-04
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 37 AQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARA 96
++G + + L + S + + L AA+ G E + L+ A + R
Sbjct: 1 GEFGKSAL--DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRK 58
Query: 97 QSTLFPASPLHLASRNGH 114
+PLHLA+
Sbjct: 59 S------TPLHLAAGYNR 70
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 70.9 bits (175), Expect = 3e-16
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+T LH A VV L+ P + +TA LA ++ + L+ +
Sbjct: 43 NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA 102
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
AR L + LH+A
Sbjct: 103 APGTLDLEARNYDGL---TALHVAVNTEC 128
Score = 67.1 bits (165), Expect = 1e-14
Identities = 24/90 (26%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRT 84
D TALH A V LLE D + + + L A + L V L+
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-Q 171
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
H + A S LH AS G
Sbjct: 172 HGANVNAQMYSGS------SALHSASGRGL 195
Score = 66.7 bits (164), Expect = 2e-14
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH----SCDPTIRNSRHETALDLAAQYGRLETVDTL 81
+ +TA H A ++ + LL+ + D RN TAL +A ETV L
Sbjct: 76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135
Query: 82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ I A + ++ + PL A N
Sbjct: 136 L-ERGADIDAVDIKSGRS-----PLIHAVENNS 162
Score = 65.6 bits (161), Expect = 3e-14
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
K + L A + +V LL+H + + +AL A+ G L V TLVR
Sbjct: 147 IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-S 205
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
N +PL +A
Sbjct: 206 GADSSLKNCHND------TPLMVARSRRV 228
Score = 65.6 bits (161), Expect = 4e-14
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ALH A+ G P+V L+ D +++N ++T L +A ++ +
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA 236
Score = 64.4 bits (158), Expect = 1e-13
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLE----HSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
+D +T LH A G+ P V +L+ + I N+ +T L LA V L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
V T A + Q + HLA +
Sbjct: 66 V-TAGASPMALDRHGQ------TAAHLACEHRS 91
Score = 39.4 bits (93), Expect = 1e-04
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH 51
N+T L A ++
Sbjct: 213 NCHNDTPLMVARSRRVIDILRGKATR 238
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 69.4 bits (171), Expect = 4e-16
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 13/92 (14%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ + L AA G V LLE +P NS + + G +
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAEL----- 62
Query: 86 PGLIQA---YNARAQSTLFPASPLHLASRNGH 114
L+ N +TL P+H A+R G
Sbjct: 63 --LLLHGAEPNCADPATL--TRPVHDAAREGF 90
Score = 66.7 bits (164), Expect = 3e-15
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 13/90 (14%)
Query: 26 TKDNET-ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
T +H AA+ G + L +R++ +DLA + G + L
Sbjct: 74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA- 132
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
G + N + + G
Sbjct: 133 AAGGTRGSN-----------HARIDAAEGP 151
Score = 54.4 bits (132), Expect = 2e-10
Identities = 8/54 (14%), Positives = 13/54 (24%), Gaps = 5/54 (9%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 79
+ A + GH V L + + A G + D
Sbjct: 108 DAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS-----NHARIDAAEGPSDIPD 156
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 71.8 bits (177), Expect = 4e-16
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 22/110 (20%)
Query: 27 KDNE--TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
DNE LH AA G+ + L+ NS +T LD+A + E + V
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR 161
Query: 85 HPGLIQAYNARAQSTLFPA--------------------SPLHLASRNGH 114
I+A + + + LH+A+ G+
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211
Score = 61.7 bits (151), Expect = 1e-12
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
D TALH A + +V L+E+ + ++ L AA G L+ + L+ +
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI-SQ 128
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ A N+ +PL +A
Sbjct: 129 GAHVGAVNSEGD------TPLDIAEEEAM 151
Score = 61.7 bits (151), Expect = 2e-12
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 23/97 (23%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
K TALH AA G+T V+ L++ D I++ T L AA +G+ E LV
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255
Query: 83 -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
G + +A +
Sbjct: 256 CDMEAVNKVGQ---------------TAFDVADEDIL 277
Score = 61.4 bits (150), Expect = 2e-12
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 27 KDNE-TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
K ++ A G T V +LLE D N TAL A ++ V LV +
Sbjct: 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-N 95
Query: 86 PGLIQAYNARAQS--TLFPASPLHLASRNGH 114
I N PLH A+ G+
Sbjct: 96 GANI---NQPDNEGWI-----PLHAAASCGY 118
Score = 60.2 bits (147), Expect = 6e-12
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
D T LH AA +G L+E+ CD N +TA D+A + +
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284
Score = 56.0 bits (136), Expect = 2e-10
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 19/101 (18%)
Query: 21 ELLMLTKDN--ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 78
+ + + E A + L + TAL +AA G E +
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215
Query: 79 DTLVRTHPGLIQA---YNARAQS--TLFPASPLHLASRNGH 114
L IQA N + T PLH A+ G
Sbjct: 216 KLL-------IQARYDVNIKDYDGWT-----PLHAAAHWGK 244
Score = 52.5 bits (127), Expect = 3e-09
Identities = 12/96 (12%), Positives = 21/96 (21%), Gaps = 24/96 (25%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV---- 82
+ G + + ++ L A G E V L+
Sbjct: 6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLRLLERGA 64
Query: 83 ----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
GL + LH A + +
Sbjct: 65 DINYANVDGL---------------TALHQACIDDN 85
Score = 33.6 bits (78), Expect = 0.011
Identities = 5/58 (8%), Positives = 15/58 (25%), Gaps = 8/58 (13%)
Query: 57 IRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ +++ + L G ++ V + + A +G
Sbjct: 3 MADAKQKRNEQLKRWIGSETDLEPPVV-KRKKT---KVKFDD----GAVFLAACSSGD 52
Score = 32.5 bits (75), Expect = 0.027
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH 51
K +TA A + + +
Sbjct: 262 NKVGQTAFDVADEDILGYLEELQKKQ 287
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 70.7 bits (174), Expect = 4e-16
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ TALH A GHT +V L++ + +S T L AA ++ LV
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV-ES 125
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ A T A+ G+
Sbjct: 126 GAAVFAMTYSDMQT---AADKCEEMEEGY 151
Score = 68.4 bits (168), Expect = 3e-15
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 33/102 (32%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
L ++ G +V +++ DP++ N TAL A G E V LV
Sbjct: 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 83 ----------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
T PLH A+ +
Sbjct: 94 VNVNAADSDGWT--------------------PLHCAASCNN 115
Score = 64.9 bits (159), Expect = 6e-14
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 8/88 (9%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ +L + S+ + H N L ++ G + V ++
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRII-YEV 60
Query: 87 GLIQAYNARAQSTLFPASPLHLASRNGH 114
N + LH A GH
Sbjct: 61 DDPSLPNDEGI------TALHNAVCAGH 82
Score = 56.5 bits (137), Expect = 1e-10
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN-SRHETALDL--AAQYGRLETVDTLV 82
D T LHCAA + V L+E S +TA D + G + L
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159
Score = 46.5 bits (111), Expect = 4e-07
Identities = 11/53 (20%), Positives = 14/53 (26%), Gaps = 2/53 (3%)
Query: 27 KDNETA--LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLET 77
D +TA + G+T L I N AL E
Sbjct: 135 SDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187
Score = 26.0 bits (58), Expect = 4.0
Identities = 3/11 (27%), Positives = 3/11 (27%)
Query: 105 PLHLASRNGHR 115
L R R
Sbjct: 8 SLPPGKRTNLR 18
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 70.7 bits (174), Expect = 5e-16
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 15/105 (14%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT- 84
+ TALH AA Y VV L+E D + + R TAL+LA + + ++
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 167
Query: 85 ----HPGLIQAYNARAQSTLFPAS----------PLHLASRNGHR 115
+I + +L
Sbjct: 168 RRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGG 212
Score = 68.4 bits (168), Expect = 4e-15
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ ET AA+ +SQLL D + TAL A G + V L
Sbjct: 43 SEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAG 100
Query: 87 GLIQAYNARAQSTLFPASPLHLASRNGH 114
+ + R T LH+A+
Sbjct: 101 ADLDHRDMRGGLT-----ALHMAAGYVR 123
Score = 66.1 bits (162), Expect = 2e-14
Identities = 27/97 (27%), Positives = 33/97 (34%), Gaps = 24/97 (24%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLV--- 82
++ TAL A G V L E D R+ R TAL +AA Y R E V+ LV
Sbjct: 75 ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 134
Query: 83 -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
GL + L LA
Sbjct: 135 ADIEVEDERGL---------------TALELAREILK 156
Score = 59.5 bits (145), Expect = 7e-12
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
+ + GH+P + D S +ET AA+ + + L+
Sbjct: 14 EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL--EDR 68
Query: 88 LIQAYNARAQSTLFPASPLHLASRNGH 114
+ A + + + L + G
Sbjct: 69 DVDAVDENGR------TALLFVAGLGS 89
Score = 48.4 bits (116), Expect = 7e-08
Identities = 11/111 (9%), Positives = 18/111 (16%), Gaps = 31/111 (27%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH-------SCDPTIRNSRHE--------------- 63
+ TAL A + T ++ + E
Sbjct: 141 DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGK 200
Query: 64 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
L + H A+ L A
Sbjct: 201 DVEYLVRWKDGGDCEWVKGV-HVAED---VAKDYED-----GLEYAVAESV 242
Score = 43.4 bits (103), Expect = 4e-06
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 15 ETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR 74
E DE++ + + H + ++ +E L+ A
Sbjct: 185 EYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESV 242
Query: 75 L 75
+
Sbjct: 243 I 243
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 71.5 bits (176), Expect = 6e-16
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
D T L A +V+ L++ DPTI N +AL AA + ++
Sbjct: 164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLN-ST 222
Query: 87 GLIQAYNARAQ--STLFPASPLHLASRNGHR 115
L + T L + + N R
Sbjct: 223 KLKGDIEELDRNGMT-----ALMIVAHNEGR 248
Score = 63.4 bits (155), Expect = 6e-13
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+D +T + AAQ G VV L++ ++ TA LA VD
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366
Score = 63.0 bits (154), Expect = 7e-13
Identities = 22/97 (22%), Positives = 28/97 (28%), Gaps = 15/97 (15%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHS--------CDPTIRNSRHETALDLAAQYGRLET 77
+ N T LH A L+ H D + T L LA R
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 181
Query: 78 VDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
V L+ YN + S LH A+ N
Sbjct: 182 VAYLM-KAGADPTIYNKSER------SALHQAAANRD 211
Score = 61.9 bits (151), Expect = 2e-12
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
TALH AAQ + P+V L+ + ++ +T + LAAQ GR+E V L+
Sbjct: 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-QQ 335
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
++A +A + LA N H
Sbjct: 336 GASVEAVDATDH------TARQLAQANNH 358
Score = 58.8 bits (143), Expect = 2e-11
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 19/102 (18%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSC---DPTIRNSRHETALDLAAQYGRLETVDT-- 80
K +ALH AA ++ +L + D + TAL + A + V +
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255
Query: 81 -LV-------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
LV + + + + LH A++ +
Sbjct: 256 LLVEKGAKVDYDGAARKDSEKYKGR------TALHYAAQVSN 291
Score = 58.4 bits (142), Expect = 3e-11
Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 9/88 (10%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ G+ + + PT L A G + + R
Sbjct: 59 HYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESV 117
Query: 87 GLIQAYNARAQSTLFPASPLHLASRNGH 114
+I + R + LH + N
Sbjct: 118 NIIDPRHNR--------TVLHWIASNSS 137
Score = 55.7 bits (135), Expect = 2e-10
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 23/103 (22%)
Query: 26 TKDNETALHCAAQYGHTPVVSQ---LLEH--------SCDPTIRNSRHETALDLAAQYGR 74
++ TAL A V+ L+E + + TAL AAQ
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291
Query: 75 LETVDTLVRTHPGLIQAY-NARAQ--STLFPASPLHLASRNGH 114
+ V LV G + + + + T P+ LA++ G
Sbjct: 292 MPIVKYLV-GEKG---SNKDKQDEDGKT-----PIMLAAQEGR 325
Score = 36.9 bits (86), Expect = 9e-04
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCD 54
+ TA A H +V +
Sbjct: 344 ATDHTARQLAQANNHHNIVDIFDRCRPE 371
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 69.8 bits (172), Expect = 6e-16
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 14/92 (15%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ T L+ A + L++ D ++NS ++ A GR E + +++
Sbjct: 37 TEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA- 95
Query: 87 GLIQAYNARAQ----STLFPASPLHLASRNGH 114
+ L A+ GH
Sbjct: 96 ----TPDLNKHNRYGGN-----ALIPAAEKGH 118
Score = 67.1 bits (165), Expect = 7e-15
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
T + L A Q V L + + ++ T L++A +E L+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI-DR 61
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
I N+ + SP A G
Sbjct: 62 GADINLQNSISD------SPYLYAGAQGR 84
Score = 58.6 bits (143), Expect = 1e-11
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+++ A G T +++ +L+H+ D N AL AA+ G ++ V L+
Sbjct: 70 SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Score = 54.8 bits (133), Expect = 2e-10
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 27 KDNETALHCAAQY-----GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
TAL A + +V L+E+ D +I+++ TA+D A Q G E L
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Query: 82 V 82
Sbjct: 198 A 198
Score = 54.4 bits (132), Expect = 3e-10
Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 39/107 (36%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSC-DPTIRNSRHETALDLAAQY-----GRLETVDT 80
+ AL AA+ GH V LLE D +N TAL A + V
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163
Query: 81 LV-------------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
L+ RT + A++ G+
Sbjct: 164 LMENGADQSIKDNSGRT--------------------AMDYANQKGY 190
Score = 41.7 bits (99), Expect = 1e-05
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHS 52
TA+ A Q G+T + L +++
Sbjct: 176 NSGRTAMDYANQKGYTEISKILAQYN 201
Score = 32.8 bits (76), Expect = 0.018
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 57 IRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
++ L+ A Q + + L + + +PL++A N
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQ-DTTYQVDEVDTEGN------TPLNIAVHNND 51
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 69.1 bits (170), Expect = 7e-16
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ TALH AA Y VV L+E D + + R TAL+LA + + +
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 163
Score = 67.5 bits (166), Expect = 3e-15
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ ET AA+ +SQLL D + TAL A G + V L
Sbjct: 42 SEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAG 99
Query: 87 GLIQAYNARAQSTLFPASPLHLASRNGH 114
+ + R T LH+A+
Sbjct: 100 ADLDHRDMRGGLT-----ALHMAAGYVR 122
Score = 66.4 bits (163), Expect = 7e-15
Identities = 26/102 (25%), Positives = 31/102 (30%), Gaps = 34/102 (33%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLV--- 82
++ TAL A G V L E D R+ R TAL +AA Y R E V+ LV
Sbjct: 74 ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 133
Query: 83 ----------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
T L LA
Sbjct: 134 ADIEVEDERGLT--------------------ALELAREILK 155
Score = 58.7 bits (143), Expect = 6e-12
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 15/90 (16%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ + GH+P + D S +ET AA+ + + L+
Sbjct: 12 GEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL--ED 66
Query: 87 GLIQAYNARAQS--TLFPASPLHLASRNGH 114
+ +A ++ T L + G
Sbjct: 67 RDV---DAVDENGRT-----ALLFVAGLGS 88
Score = 38.2 bits (90), Expect = 2e-04
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEH 51
+ TAL A + T ++
Sbjct: 141 ERGLTALELAREILKTTPKGNPMQF 165
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 67.8 bits (167), Expect = 7e-16
Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 13/91 (14%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ A + G V + D L AA G+LE ++ L+
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL--- 61
Query: 87 GLIQAY-NARAQ--STLFPASPLHLASRNGH 114
A NA + T PL A GH
Sbjct: 62 --KGADINAPDKHHIT-----PLLSAVYEGH 85
Score = 66.3 bits (163), Expect = 3e-15
Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 23/101 (22%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV---- 82
+ LH AA G ++ LL D + H T L A G + V L+
Sbjct: 38 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 83 ----RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
+ GL + + LQ
Sbjct: 98 DKTVKGPDGL---------------TAFEATDNQAIKALLQ 123
Score = 31.6 bits (73), Expect = 0.030
Identities = 3/20 (15%), Positives = 5/20 (25%)
Query: 26 TKDNETALHCAAQYGHTPVV 45
D TA ++
Sbjct: 103 GPDGLTAFEATDNQAIKALL 122
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 69.0 bits (170), Expect = 8e-16
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ ++T LH AA +GH +V +LL++ D N L A +G+ + + LV +
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA-N 127
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
L+ N + P+ A
Sbjct: 128 GALVSICNKYGE------MPVDKAKAPLR 150
Score = 66.7 bits (164), Expect = 5e-15
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ LH A + G + VV L+ + N +T L LAA +G + V L++ +
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-Y 94
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
I A N PLH A G
Sbjct: 95 KADINAVNEHGN------VPLHYACFWGQ 117
Score = 66.7 bits (164), Expect = 6e-15
Identities = 14/89 (15%), Positives = 21/89 (23%), Gaps = 13/89 (14%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ LH A +G V L+ + +I N E +D A R +
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE--- 158
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
P G
Sbjct: 159 -----KMGQNLNRI-----PYKDTFWKGT 177
Score = 64.0 bits (157), Expect = 5e-14
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
+ + + + G+ V L+++ D + + L A + GR V+ L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-M 60
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
I N + PLHLA+ +GHR
Sbjct: 61 RGARINVMNRGDDT------PLHLAASHGHR 85
Score = 26.2 bits (59), Expect = 2.7
Identities = 3/14 (21%), Positives = 3/14 (21%)
Query: 29 NETALHCAAQYGHT 42
N G T
Sbjct: 165 NRIPYKDTFWKGTT 178
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 67.5 bits (166), Expect = 1e-15
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
++ L AA G V QLLE DP N + + G + + L+
Sbjct: 10 GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLL---- 64
Query: 87 GLIQAYNA--RAQSTLFPASPLHLASRNGH 114
+ A P+H A+R G
Sbjct: 65 ----LHGAEPNCADPATLTRPVHDAAREGF 90
Score = 61.7 bits (151), Expect = 2e-13
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET-ALDLAAQYGRLETVDTLVRTH 85
+ + G V LL H +P + T + AA+ G L+T+ L
Sbjct: 43 RFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH--- 98
Query: 86 PGLIQAYNARA-QSTLFPASPLHLASRNGH 114
AR + P+ LA GH
Sbjct: 99 -----RAGARLDVCDAWGRLPVDLAEEQGH 123
Score = 60.9 bits (149), Expect = 4e-13
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 27 KDNE---TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
D +H AA+ G + L + ++ +DLA + G + L
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLH 131
Score = 40.1 bits (95), Expect = 3e-05
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH 51
+ A + GH + L
Sbjct: 108 DAWGRLPVDLAEEQGHRDIARYLHAA 133
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 69.4 bits (171), Expect = 1e-15
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
T T LH A V L+E+ I++ ++ L AA G L+ ++ L
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ + + +PL A GH
Sbjct: 164 KSAVNWQDKQGW------TPLFHALAEGH 186
Score = 67.9 bits (167), Expect = 5e-15
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE---TALDLAAQYGRLETVDTLVR 83
+D LH + + + S LL + + + + T +A G LE V +L
Sbjct: 34 QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 84 THPGL-IQAYNARAQSTLFPASPLHLASRNGH 114
+ + + LHLA
Sbjct: 94 RPLKPDLNKITNQGV------TCLHLAVGKKW 119
Score = 66.3 bits (163), Expect = 2e-14
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 5/87 (5%)
Query: 29 NETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
+ LH A V +LL ++ L + + E L+ +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL-SKME 60
Query: 88 LIQAYNARAQSTLFPASPLHLASRNGH 114
+ N +P H+A G+
Sbjct: 61 NV---NLDDYPDDSGWTPFHIACSVGN 84
Score = 65.2 bits (160), Expect = 5e-14
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTI--RNSRHETALDLAAQYGRLETVDTLVR 83
T H A G+ VV L + P + ++ T L LA E L+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI- 127
Query: 84 THPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ ++ + Q PLH A+ G
Sbjct: 128 ENGASVRIKDKFNQ------IPLHRAASVGS 152
Score = 64.0 bits (157), Expect = 1e-13
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
K N+ LH AA G ++ L ++ + T L A G + LV
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGHRFYL 118
+ + + +A + +
Sbjct: 197 YGAEYDLVDNKGA------KAEDVALNEQVKKFF 224
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 70.7 bits (173), Expect = 1e-15
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 24 MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE--TALDLAAQYGRLETVDTL 81
++ +N A AA+ GH V+++L E + + + E A LAA+ G L ++ L
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 182
Query: 82 VRTHPGL----IQAYNARAQSTLFPASPLHLASRNGH 114
P IQA N A A GH
Sbjct: 183 CELAPTEATAMIQAENYYA--------FRWAAVGRGH 211
Score = 61.5 bits (149), Expect = 2e-12
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 28 DNETALHCAAQYGHTP---VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
+E AA G + + LL + + + A LAA+ G L ++ L
Sbjct: 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
P I A LA+ NGH
Sbjct: 151 APTEIMAMIQAENYH-----AFRLAAENGH 175
Score = 49.9 bits (119), Expect = 2e-08
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 19/102 (18%)
Query: 14 METETEDELLMLTKDNETALHCAA-QYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY 72
E + M+ +N A AA GH V++ LL+ A +Y
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY-------AEIHEFEY 235
Query: 73 GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
G + R L + ++A L++ +G
Sbjct: 236 GEKYVNPFIARHVNRLKEMHDA-----------FKLSNPDGV 266
Score = 48.4 bits (115), Expect = 1e-07
Identities = 9/96 (9%), Positives = 22/96 (22%), Gaps = 18/96 (18%)
Query: 27 KDNETALHCAAQYGHTPVVSQL--------LEHSCDPTIRNSRHETALDLAAQYGRLETV 78
L + ++ + ++ L LA + G
Sbjct: 276 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 335
Query: 79 DTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
L+ + + L A+ ++ G
Sbjct: 336 ALLL----------SIPSVLALTKANNYYINETGGR 361
Score = 47.2 bits (112), Expect = 2e-07
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
D L A + G+ + LL P++ + GRL+ + H
Sbjct: 317 GDANELLRLALRLGNQGACALLLSI---PSVLALTKANNYYINETGGRLDLRAVALEHH 372
Score = 43.4 bits (102), Expect = 6e-06
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 10/90 (11%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL-VRT 84
K+ A + G +V++ L + +D +
Sbjct: 251 LKEMHDAFKLSNPDGVFDLVTKSECLQG---------FYMLRNLIRRNDEVLLDDIRFLL 301
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
I+A A L LA R G+
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGN 331
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 66.2 bits (163), Expect = 1e-15
Identities = 36/92 (39%), Positives = 46/92 (50%), Gaps = 17/92 (18%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
+ T LH AA+ GH VV LLE D ++ T L LAA+ G LE V
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL------- 53
Query: 88 LIQA---YNARAQ--STLFPASPLHLASRNGH 114
L++A NA+ + T PLHLA+RNGH
Sbjct: 54 LLEAGADVNAKDKNGRT-----PLHLAARNGH 80
Score = 61.6 bits (151), Expect = 8e-14
Identities = 24/57 (42%), Positives = 30/57 (52%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
K+ T LH AA+ GH VV LLE D ++ T L LAA+ G LE V L+
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 40.0 bits (95), Expect = 1e-05
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH 51
K+ T LH AA+ GH VV LLE
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEA 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 67.0 bits (165), Expect = 1e-15
Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 33/100 (33%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV----- 82
+ T LH AA+ GH VV LLE D ++ T L LAA+ G LE V L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 83 --------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
RT PLHLA+RNGH
Sbjct: 61 VNAKDKNGRT--------------------PLHLAARNGH 80
Score = 66.6 bits (164), Expect = 2e-15
Identities = 36/97 (37%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
K+ T LH AA+ GH VV LLE D ++ T L LAA+ G LE V L+
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--- 88
Query: 86 PGLIQAYNARAQ--------STLFPASPLHLASRNGH 114
A A T PLHLA+RNGH
Sbjct: 89 -------EAGADVNAKDKNGRT-----PLHLAARNGH 113
Score = 60.8 bits (149), Expect = 3e-13
Identities = 24/57 (42%), Positives = 30/57 (52%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
K+ T LH AA+ GH VV LLE D ++ T L LAA+ G LE V L+
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 41.6 bits (99), Expect = 7e-06
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH 51
K+ T LH AA+ GH VV LLE
Sbjct: 98 DKNGRTPLHLAARNGHLEVVKLLLEA 123
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 69.8 bits (172), Expect = 2e-15
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
K+ T AA G ++ L D + TA AA YG+++ + L
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 83 -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
R Q + +T L A+ GH
Sbjct: 129 ANVNLRRKTKEDQERLRKGGAT-----ALMDAAEKGH 160
Score = 66.3 bits (163), Expect = 3e-14
Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 36/104 (34%)
Query: 27 KDNE---TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV- 82
++ E T LH A Q +V LL H DP +R T LAA G ++ + +
Sbjct: 34 QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93
Query: 83 ------------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
T A+ G
Sbjct: 94 KGADVNECDFYGFT--------------------AFMEAAVYGK 117
Score = 66.0 bits (162), Expect = 4e-14
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRT 84
++ L A Q +V QLLE + + T L A Q R + V+ L+R
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR- 60
Query: 85 HPGLIQAYNARAQ--STLFPASPLHLASRNGH 114
H R + +T P LA+ G
Sbjct: 61 HGADP---VLRKKNGAT-----PFLLAAIAGS 84
Score = 64.0 bits (157), Expect = 2e-13
Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 22/111 (19%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE----------TALDLAAQYGRL 75
TA AA YG + L + + +R E TAL AA+ G +
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161
Query: 76 ETVDTLVRTHPGLIQAY-NARAQS--TLFPASPLHLASRNGHRFYLQQKVQ 123
E + L+ G A NA L A + ++
Sbjct: 162 EVLKILL-DEMG---ADVNACDNMGRN-----ALIHALLSSDDSDVEAITH 203
Score = 62.5 bits (153), Expect = 9e-13
Identities = 21/96 (21%), Positives = 27/96 (28%), Gaps = 16/96 (16%)
Query: 26 TKDNETALHCAAQYGHTP----VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
AL A + LL+H D +R R +T L LA + L V L
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238
Query: 82 VRTHPGLIQAY-NARAQS--TLFPASPLHLASRNGH 114
+ N T L LA
Sbjct: 239 L-EQEH---IEINDTDSDGKT-----ALLLAVELKL 265
Score = 60.6 bits (148), Expect = 4e-12
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 14/108 (12%)
Query: 13 DMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSC-DPTIRNSRHETALDLAAQ 71
++ +T+++ L K TAL AA+ GH V+ LL+ D ++ AL A
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191
Query: 72 YGRLETVDTLVRTHPGLIQAY---NARAQS--TLFPASPLHLASRNGH 114
V+ + L+ N R + T PL LA H
Sbjct: 192 SSDDSDVEAITHL---LLDHGADVNVRGERGKT-----PLILAVEKKH 231
Score = 60.2 bits (147), Expect = 5e-12
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ +T L A + H +V +LLE + +S +TAL LA + + + L
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273
Score = 40.9 bits (97), Expect = 3e-05
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 59
D +TAL A + + L + +
Sbjct: 250 DSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 68.2 bits (168), Expect = 3e-15
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ ETALH AA+Y + +LLE S D I+++ T L A L+R
Sbjct: 23 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 87 GLIQAYNARAQS--TLFPASPLHLASRNGH 114
+ +AR T PL LA+R
Sbjct: 83 TDL---DARMHDGTT-----PLILAARLAV 104
Score = 65.9 bits (162), Expect = 3e-14
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 23/97 (23%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
++ALH AA + LL++ + ++N+R ET L LAA+ G ET L+
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181
Query: 83 -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
H P +A H
Sbjct: 182 ANRDITDHMDR---------------LPRDIAQERMH 203
Score = 64.4 bits (158), Expect = 7e-14
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
ET L AA+ G LL+H + I + D+A + + V L
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 211
Score = 63.6 bits (156), Expect = 2e-13
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
D T L AA+ ++ L+ D + ++AL AA ++ L+ +
Sbjct: 89 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KN 147
Query: 86 PGLIQAYNARAQS--TLFPASPLHLASRNGH 114
+ + T PL LA+R G
Sbjct: 148 GANK---DMQNNREET-----PLFLAAREGS 170
Score = 62.8 bits (154), Expect = 4e-13
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
T LH A V L+ + D R T L LAA+ ++ L+
Sbjct: 56 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NS 114
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ A + +S LH A+ +
Sbjct: 115 HADVNAVDDLGKS------ALHWAAAVNN 137
Score = 39.3 bits (93), Expect = 1e-04
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH 51
+ A + H +V L E+
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDEY 213
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 66.2 bits (163), Expect = 6e-15
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
T LH AA GH +V LL++ D + T L LAA +G LE V+ L+ +
Sbjct: 45 ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KNG 103
Query: 87 GLIQAYNARAQSTLFPASPLHLASRNGH 114
+ A + +PLHLA+ GH
Sbjct: 104 ADVNANDMEGH------TPLHLAAMFGH 125
Score = 65.5 bits (161), Expect = 1e-14
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
D L AA+ G V L+ + D ++ T L LAA G LE V+ L+ +
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNG 70
Query: 87 GLIQAYNARAQ--STLFPASPLHLASRNGH 114
+ NA T PL LA+ GH
Sbjct: 71 ADV---NAVDHAGMT-----PLRLAALFGH 92
Score = 64.3 bits (158), Expect = 4e-14
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
T L AA +GH +V LL++ D + T L LAA +G LE V+ L+ +
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KN 135
Query: 86 PGLIQAYNARAQ--STLFPASPLHLASRNGH 114
+ NA+ + T ++ NG+
Sbjct: 136 GADV---NAQDKFGKT-----AFDISIDNGN 158
Score = 60.5 bits (148), Expect = 1e-12
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ T LH AA +GH +V LL++ D ++ +TA D++ G + + L
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 40.8 bits (97), Expect = 2e-05
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHS 52
K +TA + G+ + L + +
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEILQKLN 169
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 65.9 bits (162), Expect = 9e-15
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ +H AA+ G + LLE D I ++ L LAA+ G L V+ LV H
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV-KH- 125
Query: 87 GLIQAYNARAQ----STLFPASPLHLASRNGH 114
A N + T LA G
Sbjct: 126 T---ASNVGHRNHKGDT-----ACDLARLYGR 149
Score = 62.8 bits (154), Expect = 1e-13
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 34/101 (33%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV---- 82
TAL G+ + +LL +P +++ + AA+ G L+T+ TL+
Sbjct: 36 GFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 83 ---------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
PLHLA++ GH
Sbjct: 95 DVNIEDNEGNL--------------------PLHLAAKEGH 115
Score = 61.2 bits (150), Expect = 4e-13
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ LH AA+ GH VV L++H + + RN + +TA DLA YGR E V +
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 60.5 bits (148), Expect = 9e-13
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 25 LTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
+ + L AA G ++ LL+++ + +N TAL + G E L+
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL-L 58
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ + +H A+R G
Sbjct: 59 RGANPDLKDRTGF------AVIHDAARAGF 82
Score = 38.1 bits (90), Expect = 2e-04
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEH 51
+TA A YG VVS + +
Sbjct: 135 HKGDTACDLARLYGRNEVVSLMQAN 159
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 67.6 bits (166), Expect = 1e-14
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE---TALDLAAQYGRLETVDTLV 82
T+D +TALH A + H P + LL S + +++ TAL LAA G TV+ L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 83 RTHPGLIQAYNARAQS--TLFPASPLHLASRNGH 114
+ + T LHLA R
Sbjct: 66 A-AGAGV---LVAERGGHT-----ALHLACRVRA 90
Score = 67.2 bits (165), Expect = 2e-14
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 12/92 (13%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRT 84
D T LH A + +V L + D T L LA + ++ L++
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK- 213
Query: 85 HPGLIQAYNARAQS--TLFPASPLHLASRNGH 114
AR T PL A +
Sbjct: 214 AGADP---TARMYGGRT-----PLGSALLRPN 237
Score = 67.2 bits (165), Expect = 2e-14
Identities = 18/99 (18%), Positives = 24/99 (24%), Gaps = 26/99 (26%)
Query: 27 KDNE---TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV- 82
+ T LH A + V+ LL+ DPT R T L A L
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246
Query: 83 -------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
L SP + +
Sbjct: 247 HGAPEPEDGGDKL---------------SPCSSSGSDSD 270
Score = 66.0 bits (162), Expect = 4e-14
Identities = 6/56 (10%), Positives = 11/56 (19%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
T L A + + L H + + + D
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEG 277
Score = 65.6 bits (161), Expect = 6e-14
Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 10/97 (10%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
+TALH AA G V +L + TAL LA + L+
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101
Query: 83 -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ T +P + S+
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSH--APAAVDSQPNP 136
Score = 54.9 bits (133), Expect = 4e-10
Identities = 16/110 (14%), Positives = 25/110 (22%), Gaps = 9/110 (8%)
Query: 6 NLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHET 64
+ R + D + + +Q + N T
Sbjct: 103 SHPRDASDTYLTQSQDCT--PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160
Query: 65 ALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
L +A + E V L + T PLHLA
Sbjct: 161 PLHVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRT-----PLHLAVEAQA 204
Score = 36.8 bits (86), Expect = 0.001
Identities = 2/26 (7%), Positives = 7/26 (26%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH 51
D + + + + E+
Sbjct: 255 GGDKLSPCSSSGSDSDSDNRDEGDEY 280
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 65.1 bits (160), Expect = 1e-14
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ +TAL +G T + +LL+ P ++++ + + AA+ G L+T+ LV H
Sbjct: 34 RFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HG 91
Query: 87 GLIQAYNARAQ--STLFPASPLHLASRNGH 114
+ N + P+HLA + GH
Sbjct: 92 ADV---NVPDGTGAL-----PIHLAVQEGH 113
Score = 64.4 bits (158), Expect = 3e-14
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ +H AA+ G + L+EH D + + + LA Q G V L
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-- 122
Query: 86 PGLIQAY-NARAQ--STLFPASPLHLASRNGH 114
++ + R T PL LA + G
Sbjct: 123 ----ESDLHRRDARGLT-----PLELALQRGA 145
Score = 62.4 bits (153), Expect = 1e-13
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+H A Q GHT VVS L S D R++R T L+LA Q G + VD L
Sbjct: 98 DGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 54.3 bits (132), Expect = 2e-10
Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 9/87 (10%)
Query: 29 NETALHCAAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
L AA G V +LL P N +TAL + +G L+
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELL-KQGA 59
Query: 88 LIQAYNARAQSTLFPASPLHLASRNGH 114
+ SP+H A+R G
Sbjct: 60 SPNVQDTSGT------SPVHDAARTGF 80
Score = 40.9 bits (97), Expect = 2e-05
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH 51
T L A Q G +V L H
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQGH 155
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 64.1 bits (157), Expect = 1e-14
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
D L AA+ G V L+ + D ++ T L LAA+ G LE V L+
Sbjct: 22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AG 80
Query: 87 GLIQAYNARAQSTLFPASPLHLASRNGHR 115
+ A + + + ++ NG+
Sbjct: 81 ADVXAQDKFGK------TAFDISIDNGNE 103
Score = 57.2 bits (139), Expect = 7e-12
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
K+ T LH AA+ GH VV LLE D ++ +TA D++ G + + L
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 52.6 bits (127), Expect = 3e-10
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 36 AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 95
+ + H S L+ S L AA+ G+ + V L+ + + A+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMA-NGADV---AAK 53
Query: 96 AQ--STLFPASPLHLASRNGH 114
+ ST PLHLA+RNGH
Sbjct: 54 DKNGST-----PLHLAARNGH 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 64.7 bits (159), Expect = 2e-14
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ LH AAQYGH LL R T L +AA G V+ L+ H
Sbjct: 32 WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-KHG 90
Query: 87 GLIQAYNARAQ--STLFPASPLHLASRNGH 114
+ NA+ T LH A+ + H
Sbjct: 91 ADV---NAKDMLKMT-----ALHWATEHNH 112
Score = 63.2 bits (155), Expect = 7e-14
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
TK + T LH AA GH +V LL+H D ++ TAL A ++ E V+ L++ +
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK-Y 122
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ + + + ++ NG+
Sbjct: 123 GADVHTQSKFCK------TAFDISIDNGN 145
Score = 60.9 bits (149), Expect = 6e-13
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
TALH A ++ H VV L+++ D ++ +TA D++ G + + L
Sbjct: 98 MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 58.6 bits (143), Expect = 4e-12
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
D L AA+ G V L+ + T + + L LAAQYG T + L+R
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLR-AGV 58
Query: 88 LIQAYNARAQS--TLFPASPLHLASRNGH 114
+AR + T PLH+A+ GH
Sbjct: 59 SR---DARTKVDRT-----PLHMAASEGH 79
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 66.1 bits (162), Expect = 2e-14
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 30 ETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHETALDLAAQYGRLETVDTL------V 82
E+ L AA+ +S+LL C+ R + ETAL +AA Y LE L +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
P + Y + + LH+A N +
Sbjct: 64 VFEPMTSELYEGQ--------TALHIAVINQN 87
Score = 64.5 bits (158), Expect = 1e-13
Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 3/106 (2%)
Query: 12 RDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 71
R + L E L AA G +V L+EH D ++S T L +
Sbjct: 104 RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163
Query: 72 YGRLETVDTLVR---THPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ ++ G + +P LA G+
Sbjct: 164 QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209
Score = 64.2 bits (157), Expect = 1e-13
Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 19/104 (18%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH-----SCDPTIRNSRHETALDLAAQYGRLETVDT 80
ETALH AA Y + L+E T +TAL +A + V
Sbjct: 34 GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93
Query: 81 LVRTHPGLIQAYNARAQSTLFPAS----------PLHLASRNGH 114
L+ + +ARA ++F PL A+ G
Sbjct: 94 LLA-RGASV---SARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Score = 52.2 bits (126), Expect = 3e-09
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 20/102 (19%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-------------ETALDLAAQY 72
+ +TALH A + +V LL + R + E L AA
Sbjct: 72 LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131
Query: 73 GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
G E V L+ H I+A ++ + LH+ +
Sbjct: 132 GSEEIVRLLI-EHGADIRAQDSLGN------TVLHILILQPN 166
Score = 51.5 bits (124), Expect = 6e-09
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 10/67 (14%)
Query: 26 TKDNETALHCAAQYGHTPVVSQ----LLEH------SCDPTIRNSRHETALDLAAQYGRL 75
T LH + Q LL + + N++ T LA G +
Sbjct: 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI 210
Query: 76 ETVDTLV 82
L+
Sbjct: 211 VMFQHLM 217
Score = 39.5 bits (93), Expect = 9e-05
Identities = 7/49 (14%), Positives = 14/49 (28%)
Query: 11 SRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 59
S D + L+ T A G+ + L++ +
Sbjct: 179 SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAH 227
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 63.9 bits (157), Expect = 4e-14
Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 24/97 (24%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
+ + L AA+ G V +L S + R T L AA Y R+ V+ L+
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 83 -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ GL PLH A GH
Sbjct: 66 ADVHAKDKGGL---------------VPLHNACSYGH 87
Score = 62.4 bits (153), Expect = 2e-13
Identities = 25/101 (24%), Positives = 30/101 (29%), Gaps = 33/101 (32%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV---- 82
T LH AA Y VV LL+H D ++ L A YG E + LV
Sbjct: 40 GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
Query: 83 ---------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
T PLH A+ G
Sbjct: 100 VVNVADLWKFT--------------------PLHEAAAKGK 120
Score = 57.8 bits (141), Expect = 1e-11
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
T LH AA G + LL+H DPT +N T LDL G + D L
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLR 160
Score = 55.1 bits (134), Expect = 1e-10
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
K LH A YGH V L++H + + T L AA G+ E L+
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128
Score = 40.8 bits (97), Expect = 2e-05
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 14/60 (23%)
Query: 59 NSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQ----STLFPASPLHLASRNGH 114
NS + L AA+ G +ETV L + N R ST PLH A+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQ-----SVNCRDIEGRQST-----PLHFAAGYNR 54
Score = 30.4 bits (70), Expect = 0.12
Identities = 6/26 (23%), Positives = 8/26 (30%), Gaps = 1/26 (3%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH 51
+D T L G T + L
Sbjct: 138 NRDGNTPLDLVK-DGDTDIQDLLRGD 162
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 64.3 bits (158), Expect = 6e-14
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 33/101 (32%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV---- 82
N T L A G + +L+E+ ++ TAL A + RL + L+
Sbjct: 33 SYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS 92
Query: 83 ---------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+T PL + G+
Sbjct: 93 NVNTKDFSGKT--------------------PLMWSIIFGY 113
Score = 62.8 bits (154), Expect = 2e-13
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 33/101 (32%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV---- 82
+ TAL A + + +LL + ++ +T L + +G E L+
Sbjct: 66 IEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125
Query: 83 ---------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
T PL +AS+ G
Sbjct: 126 NVNDRNLEGET--------------------PLIVASKYGR 146
Score = 61.3 bits (150), Expect = 8e-13
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ ET L A++YG + +V +LLE D + R+ TA A +GR E +
Sbjct: 132 LEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 61.3 bits (150), Expect = 9e-13
Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 35/103 (33%)
Query: 27 KDN--ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV-- 82
KD +T L + +G++ + LLEH + RN ET L +A++YGR E V L+
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156
Query: 83 -----------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
T A G
Sbjct: 157 GADISARDLTGLT--------------------AEASARIFGR 179
Score = 47.8 bits (115), Expect = 9e-08
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 17/90 (18%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
K+ E + + L + R+S + T L +A G +D LV +
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFLRNY------RDSYNRTPLMVACMLGMENAIDKLV-ENF 58
Query: 87 GLIQAYNARAQ--STLFPASPLHLASRNGH 114
+ + ST L A +N
Sbjct: 59 DKL---EDKDIEGST-----ALIWAVKNNR 80
Score = 38.1 bits (90), Expect = 2e-04
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 27 KDN--ETALHCAAQYGHTPVVSQLLEH 51
+D TA A +G V+ E
Sbjct: 163 RDLTGLTAEASARIFGRQEVIKIFTEV 189
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 62.4 bits (152), Expect = 3e-13
Identities = 13/100 (13%), Positives = 25/100 (25%), Gaps = 16/100 (16%)
Query: 26 TKDNETALHCAAQYGHTPVVSQ------LLEHSCDPTIRNSRHETALDLAAQYGRLETVD 79
TK+ T Q G + LE D T ++ + ++ +
Sbjct: 72 TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENE 131
Query: 80 TLVRTHPGLIQA---YNARAQS--TLFPASPLHLASRNGH 114
+ Q+ + + T L R
Sbjct: 132 MIPLYKLIFSQSGLQLLIKDKWGLT-----ALEFVKRCQK 166
Score = 53.9 bits (130), Expect = 4e-10
Identities = 7/64 (10%), Positives = 18/64 (28%), Gaps = 7/64 (10%)
Query: 27 KDNETALHCAAQYGH------TPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVD 79
K + + P+ + S I++ TAL+ + + +
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171
Query: 80 TLVR 83
+
Sbjct: 172 MMED 175
Score = 51.6 bits (124), Expect = 4e-09
Identities = 10/92 (10%), Positives = 20/92 (21%), Gaps = 10/92 (10%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR---HETALDLAAQYGRLETVDTLVR 83
+ AA G +L E + + L R + L+
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 84 THPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
I++ + + G
Sbjct: 64 -KGADIKSRTKEGT------TLFFPLFQGGGN 88
Score = 50.8 bits (122), Expect = 6e-09
Identities = 11/91 (12%), Positives = 19/91 (20%), Gaps = 15/91 (16%)
Query: 31 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDT--LVRTHPGL 88
L + L+ D R T Q G + T L +
Sbjct: 44 DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKI---F 100
Query: 89 IQA---YNARAQS--TLFPASPLHLASRNGH 114
++ A + + N
Sbjct: 101 LEKGADITALYKPYKI-----VVFKNIFNYF 126
Score = 38.9 bits (91), Expect = 1e-04
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS 60
K TAL + + + ++ ++ +
Sbjct: 152 KWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 61.2 bits (150), Expect = 3e-13
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
+ T L+ A +GH +V LL++ D ++ T L LAA G LE + L+ H
Sbjct: 45 EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL-KHG 103
Query: 87 GLIQAYNARAQ--STLFPASPLHLASRNGH 114
+ NA+ + T ++ NG+
Sbjct: 104 ADV---NAQDKFGKT-----AFDISIGNGN 125
Score = 58.6 bits (143), Expect = 4e-12
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
D L AA+ G V L+ + D ++ T L LA +G LE V+ L++ +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGA 71
Query: 88 LIQAYNARAQ--STLFPASPLHLASRNGH 114
+ NA T PLHLA+ GH
Sbjct: 72 DV---NAVDAIGFT-----PLHLAAFIGH 92
Score = 56.2 bits (137), Expect = 2e-11
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 27 KDN--ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
D T LH AA GH + LL+H D ++ +TA D++ G + + L
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 38.1 bits (90), Expect = 1e-04
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHS 52
K +TA + G+ + L + +
Sbjct: 111 KFGKTAFDISIGNGNEDLAEILQKLN 136
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 63.0 bits (153), Expect = 3e-13
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+D+ TALH A GHT +V LL+ ++ + L +AA G E V L+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL-VK 95
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGHR 115
+ A N +PLH A+
Sbjct: 96 GAHVNAVNQNGC------TPLHYAASKNRH 119
Score = 58.7 bits (142), Expect = 1e-11
Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ LH AA G +V LL N T L AA R E L+
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EG 128
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRNGHR 115
A + + +H A+ G+
Sbjct: 129 GANPDAKDHYDA------TAMHRAAAKGNL 152
Score = 56.0 bits (135), Expect = 1e-10
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 23/94 (24%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV----- 82
N + A + ++L T + TAL A G E V+ L+
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 83 ---RTHPGLIQAYNARAQSTLFPASPLHLASRNG 113
+ G SPLH+A+ G
Sbjct: 66 VNDKDDAGW---------------SPLHIAASAG 84
Score = 47.6 bits (113), Expect = 1e-07
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
+ TA+H AA G+ +V LL + I+++ T L LA R+E LV T
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQ 194
Query: 86 PGLIQAYNARAQSTLFPASPLHLASRN 112
I N + +PL +A
Sbjct: 195 GASIYIENKEEK------TPLQVAKGG 215
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 62.7 bits (153), Expect = 4e-13
Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 8/90 (8%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
++ TALH A + +V L+ + +S T L AA LV H
Sbjct: 52 EEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALV-QHG 110
Query: 87 GLIQAYNARAQSTLFPASPLHLAS--RNGH 114
I A +T R G+
Sbjct: 111 AAIFATTLSDGAT-----AFEKCDPYREGY 135
Score = 61.1 bits (149), Expect = 1e-12
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
+ L AA G VV Q ++ DP+ N TAL A VD L+
Sbjct: 20 NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT-AGA 78
Query: 88 LIQAYNARAQSTLFPASPLHLASRNGH 114
+ + ++ +PLH A+
Sbjct: 79 NVNSPDSHGW------TPLHCAASCND 99
Score = 58.4 bits (142), Expect = 2e-11
Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 30/119 (25%)
Query: 27 KDNE--TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQY--GRLETVDTL 81
D+ T LHCAA T + L++H TA + Y G + L
Sbjct: 83 PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYL 142
Query: 82 V--------RTHPGLIQAYNARAQSTL-----------------FPASPLHLASRNGHR 115
+ ++ A+ + A+ +G
Sbjct: 143 ADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQE 201
Score = 39.6 bits (93), Expect = 9e-05
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 78
AL + +S S R+ ET AA +G+ V
Sbjct: 154 SGAVYALWDYSA-EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204
Score = 36.9 bits (86), Expect = 7e-04
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 11/62 (17%)
Query: 17 ETEDELLML--------TKDN--ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 66
E DEL +D ET AA +G V + P ++ R +
Sbjct: 166 EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF-GLFPRVKPQRSKVKH 224
Query: 67 DL 68
Sbjct: 225 HH 226
Score = 25.7 bits (57), Expect = 6.0
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 93 NARAQSTLFPASPLHLASRNGH 114
++ L P L A+ G
Sbjct: 12 RKARRARLNPLVLLLDAALTGE 33
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 61.0 bits (148), Expect = 2e-12
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
+AL G + ++L I N + T L LAA+ G++E +++
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242
Score = 57.9 bits (140), Expect = 3e-11
Identities = 21/120 (17%), Positives = 31/120 (25%), Gaps = 22/120 (18%)
Query: 12 RDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEH---SCDPTIRNSRHETALDL 68
R + E L AA VV+ LLE+ +S T L
Sbjct: 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHA 178
Query: 69 AAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPAS--------------PLHLASRNGH 114
++ +I Y+ Q PL LA++ G
Sbjct: 179 LVMIADNSPENS-----ALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233
Score = 57.5 bits (139), Expect = 4e-11
Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 28/112 (25%)
Query: 27 KDNETALHCAA---QYGHTPVVSQLLEHSCDP-----------TIRNSRHETALDLAAQY 72
+T L A Q G + LL+ D T + +AL +A +
Sbjct: 41 STGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK 100
Query: 73 GRLETVDTLVRTHPGLIQAYNARAQSTLFPAS----------PLHLASRNGH 114
L+ V LV + + RA F PL LA+
Sbjct: 101 RSLQCVKLLVENGADV----HLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Score = 55.6 bits (134), Expect = 2e-10
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 25/113 (22%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-------------ETALDLAAQYG 73
+ALH A + V L+E+ D +R E L LAA
Sbjct: 88 YQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147
Query: 74 RLETVDTLVRTHPGL--IQAYNARAQSTLFPAS----------PLHLASRNGH 114
+ + V L+ ++A ++ + L L + +G
Sbjct: 148 QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL 200
Score = 45.2 bits (107), Expect = 9e-07
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 15/101 (14%)
Query: 29 NETALHCAAQYGHTPVVSQLLEH--------SCDPTIRNSRHETALDLAA---QYGRLET 77
+ L G ++ LLE+ + S +T L A Q G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 78 VDTLVRTHP---GLIQAYNARAQSTLFP-ASPLHLASRNGH 114
+ L++ NA+ + S LH+A
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102
Score = 39.0 bits (91), Expect = 1e-04
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDP 55
T L AA+ G + +L+
Sbjct: 218 NHQGLTPLKLAAKEGKIEIFRHILQREFSG 247
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 60.2 bits (146), Expect = 5e-12
Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 12/97 (12%)
Query: 30 ETALHCAAQYGHTPVVSQLLEH---SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
E L AA +V LL++ D + R+S T L + +T T
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208
Query: 87 G---LIQAYNARAQSTLFPA------SPLHLASRNGH 114
LI L +PL LA+ +G
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245
Score = 57.9 bits (140), Expect = 4e-11
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 23/111 (20%)
Query: 26 TKDNETALHCA---AQYGHTPVVSQLLEHSCD-----------PTIRNSRHETALDLAAQ 71
+ +T L A G ++ LL+ + T + +TAL +A +
Sbjct: 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE 110
Query: 72 YGRLETVDTLV--------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
+ V LV + + R F PL LA+
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRP-GFYFGELPLSLAACTNQ 160
Score = 57.1 bits (138), Expect = 6e-11
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
Query: 30 ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH--------------ETALDLAAQYGRL 75
+TALH A + + +V+ L+E+ D + E L LAA +L
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161
Query: 76 ETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
V L++ A + A+ + + LH
Sbjct: 162 AIVKFLLQN--SWQPA-DISARDS-VGNTVLHALVEVAD 196
Score = 52.5 bits (126), Expect = 3e-09
Identities = 16/106 (15%), Positives = 27/106 (25%), Gaps = 30/106 (28%)
Query: 26 TKDNETALHCAAQYGHTPVVS----------------QLLEHSCDPTIRNSRHETALDLA 69
T LH + V + +L I N + T L LA
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240
Query: 70 AQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
A G++ + ++ H A+ + H
Sbjct: 241 ASSGKIGVLAYIL----------QREIHE----PECRHAAAHHHHH 272
Score = 47.1 bits (112), Expect = 2e-07
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR 61
S YN + + + E + + T L AA G V++ +L+
Sbjct: 207 SMYNEILILGAKLHPTLKLEEIT-NRKGLTPLALAASSGKIGVLAYILQREIH------- 258
Query: 62 HETALDLAAQYG 73
AA +
Sbjct: 259 EPECRHAAAHHH 270
Score = 42.8 bits (101), Expect = 6e-06
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 29 NETALHCAAQYGHTPVVSQLLE-------HSCDPTIRNSRH-ETALDLA---AQYGRLET 77
+ ++ A + + LL D ++ +T L A G+ +T
Sbjct: 13 DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72
Query: 78 VDTLVRTHPGLIQA---YNARAQSTLFP-ASPLHLASRNGH 114
+ L+ NA + + + LH+A +
Sbjct: 73 IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN 113
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 58.1 bits (140), Expect = 4e-11
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 71
+ +T L+ AA+ G+ +V LL++ DP I N +D A
Sbjct: 281 SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
Score = 56.6 bits (136), Expect = 1e-10
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG---RLETVDTLVR 83
+ T LH + +V L++H + ++ E+ L A + T + L+
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188
Query: 84 THPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
+ ++ + + LH
Sbjct: 189 YLYPCLILEDSMNR------TILHHIIITSGM 214
Score = 37.7 bits (87), Expect = 5e-04
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 19/103 (18%)
Query: 27 KDNETALHCAAQ------------YGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR 74
N T LH Y ++ +++ P + + + R
Sbjct: 199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258
Query: 75 LETVDTLVRTHPGLIQAYNARAQ--STLFPASPLHLASRNGHR 115
+++ + + NA+ T L++A+R G+
Sbjct: 259 KDSILENLDLKWIIANMLNAQDSNGDT-----CLNIAARLGNI 296
Score = 31.9 bits (72), Expect = 0.046
Identities = 9/56 (16%), Positives = 22/56 (39%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
+ + + + + ++S +T L++AA+ G + VD L+
Sbjct: 248 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 303
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 55.9 bits (135), Expect = 2e-10
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 12/97 (12%)
Query: 30 ETALHCAAQYGHTPVVSQLLEH---SCDPTIRNSRHETALDLAAQYG-RLETVDTLVRTH 85
E L AA +V L E+ D ++SR T L V
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200
Query: 86 PGLIQAYNARAQSTLFPAS--------PLHLASRNGH 114
L+ A+ + PL +A++ G
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237
Score = 52.9 bits (127), Expect = 2e-09
Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 29/120 (24%)
Query: 20 DELLMLTKDNETALHCAA---QYGHTPVVSQLLEHSCDPTI-----------RNSRHETA 65
DE +T L A G + LL+ + R +TA
Sbjct: 37 DEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTA 96
Query: 66 LDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPAS-----------PLHLASRNGH 114
L +A + V+ LV + +A+A+ F PL LA+
Sbjct: 97 LHIAIERRCKHYVELLVE-KGADV---HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152
Score = 51.7 bits (124), Expect = 5e-09
Identities = 23/99 (23%), Positives = 31/99 (31%), Gaps = 18/99 (18%)
Query: 30 ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH--------------ETALDLAAQYGRL 75
+TALH A + V L+E D + E L LAA +
Sbjct: 94 QTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP 153
Query: 76 ETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
V L G QA + R Q + + LH
Sbjct: 154 HIVHYLTEN--GHKQA-DLRRQDS-RGNTVLHALVAIAD 188
Score = 42.8 bits (101), Expect = 6e-06
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 18/75 (24%)
Query: 27 KDNE--TALHCAAQYGH---------TPVVSQLLEH-------SCDPTIRNSRHETALDL 68
+D+ T LH T + LL + + N+ + L +
Sbjct: 172 QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231
Query: 69 AAQYGRLETVDTLVR 83
AA+ G++ ++R
Sbjct: 232 AAKTGKIGIFQHIIR 246
Score = 40.1 bits (94), Expect = 6e-05
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 15/101 (14%)
Query: 29 NETALHCAAQYG----HTPVVSQLLEHSCDPTIRNSRH----ETALDLAA---QYGRLET 77
N L G ++S LL H T R +T L A GR +T
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 78 VDTLVRTHPGLIQA---YNARAQSTLFP-ASPLHLASRNGH 114
+ L+ N+ + + + LH+A
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105
Score = 37.5 bits (87), Expect = 5e-04
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRH 62
D + L AA+ G + ++ D + H
Sbjct: 223 NDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 55.0 bits (132), Expect = 4e-10
Identities = 19/58 (32%), Positives = 24/58 (41%)
Query: 24 MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
D TALH AA Y + LL+ N ETALD+A + E + L
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 48.8 bits (116), Expect = 6e-08
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 28 DNETALHCAAQYGH---TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
E LH A + + P+V ++++ + + TAL AA Y + + + L++
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK- 247
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
L+ N + + L +A + H
Sbjct: 248 GRALVGTVNEAGE------TALDIARKKHH 271
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 54.2 bits (130), Expect = 6e-10
Identities = 15/59 (25%), Positives = 20/59 (33%)
Query: 24 MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
T TALH + + LL I N ET LD+A + + L
Sbjct: 200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 49.6 bits (118), Expect = 4e-08
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 28 DNETALHCAAQYG---HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
+ETALH A + +V L+++S + + + TAL E + L+R
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR- 226
Query: 85 HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
I+ N + +PL +A R H
Sbjct: 227 GKASIEIANESGE------TPLDIAKRLKH 250
Score = 25.7 bits (56), Expect = 5.5
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCD 54
+ ET L A + H L +
Sbjct: 236 ESGETPLDIAKRLKHEHCEELLTQALSG 263
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 47.5 bits (112), Expect = 2e-07
Identities = 14/58 (24%), Positives = 20/58 (34%)
Query: 25 LTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
LH A GHT + L+ D R+S L +A + + V L
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 44.9 bits (106), Expect = 1e-06
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 27 KDNETALHCA---AQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
E LH A A P+V ++++ + + TAL AA Y + + + L++
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 228
Query: 84 THPGLIQAYNARAQSTLFPASPLHLASRNGH 114
L+ N + + L +A + H
Sbjct: 229 -GRALVGTVNEAGE------TALDIARKKHH 252
Score = 44.9 bits (106), Expect = 2e-06
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 24 MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
D TALH AA Y + LL+ N ETALD+A + E + L +
Sbjct: 202 AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 261
Query: 84 THPGLI 89
G
Sbjct: 262 AQAGTF 267
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 3e-04
Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 42/134 (31%)
Query: 15 ETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR 74
+ D ++++ K ++ +L + + + TI S L+L +
Sbjct: 398 DVIKSDVMVVVNKLHKYSL--------------VEKQPKESTI--SIPSIYLELKVK--- 438
Query: 75 LETVDTLVRTHPGLIQAYNARAQSTLFPASPL------------HLAS-RNGHRFYLQQK 121
++ H ++ YN P HL + + R L +
Sbjct: 439 ---LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 122 VQSDFCSSKVTRRF 135
V DF RF
Sbjct: 496 VFLDF-------RF 502
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.031
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 18/84 (21%)
Query: 51 HSCDP-TIRNSRHETALDL-AAQYGRLETV-DTLVRTHPGLIQAYNARAQSTLFPASPLH 107
+S P T+ + E L + A + + + + P + A P +P
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP---EPTEGFAADDE-PTTPAE 59
Query: 108 LASRNGHRFYLQQKVQSDFCSSKV 131
L + +L + SS V
Sbjct: 60 LVGK-----FLG------YVSSLV 72
Score = 31.2 bits (70), Expect = 0.10
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 44/118 (37%)
Query: 15 ETETEDELLMLTKDNETALH------CAAQ--YGHTPVVSQLLEHSCD-----PT----I 57
ET++ + + + A+ Y +T + +LE S + P+ I
Sbjct: 285 ETDSWESFFVSVRK---AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 58 RNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
N E ++ + N+ L + ++ NG +
Sbjct: 342 SNLTQEQ----------VQD----------YVNKTNSH----LPAGKQVEISLVNGAK 375
Score = 30.4 bits (68), Expect = 0.16
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 19/96 (19%)
Query: 31 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG----RLETVD---TLVR 83
TA A + S L + + L A +G + + L +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQ---------LVAIFGGQGNTDDYFEELRDLYQ 178
Query: 84 THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
T+ L+ + TL S L + + + + Q
Sbjct: 179 TYHVLVGDLIKFSAETL---SELIRTTLDAEKVFTQ 211
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta
structure, csgid, ligase, center for structural G of
infectious diseases; HET: ADP AMP CIT; 1.40A
{Clostridium perfringens}
Length = 238
Score = 26.8 bits (60), Expect = 1.9
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 1 MSEYNNLKR-KSRDM-ETETEDELLMLTKDNETA 32
+++ L K++ + T+ ED +++ KD+ TA
Sbjct: 5 VNQLEMLYEGKAKKIYATDKEDMVIVHYKDDATA 38
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer
sandwich, ligase, purine biosynthesis, structural
genomics; HET: ATP CIT; 2.03A {Methanocaldococcus
jannaschii} PDB: 2yzl_A*
Length = 242
Score = 26.5 bits (59), Expect = 3.3
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 1 MSEYNNLKR-KSRDMETETEDELLMLTKDNETA 32
+ + L K++ + +D++L+ +D+ TA
Sbjct: 8 ILKKQPLYSGKAKSIYEIDDDKVLIEFRDDITA 40
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET:
DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 26.0 bits (58), Expect = 4.3
Identities = 11/85 (12%), Positives = 18/85 (21%), Gaps = 17/85 (20%)
Query: 28 DNETALHCAAQYGHTPVV-------SQLLEHSCDPTIRNSRHETALDLAAQYGRL----- 75
DN AL A + V+ Q H+ P + L
Sbjct: 15 DN-LALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLL 73
Query: 76 ----ETVDTLVRTHPGLIQAYNARA 96
+ V + +
Sbjct: 74 FREVDDFVASVEIVKQVCAENSVTH 98
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC,
ADE2, ADE1, nucleotide complex, octahedral magnesium
coordination; HET: ADP; 2.00A {Escherichia coli} PDB:
2gqs_A*
Length = 237
Score = 25.7 bits (57), Expect = 4.6
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 1 MSEYNNLKR-KSRDM-ETETEDELLMLTKDNETA 32
M + L R K++ + TE D L++ +++ +A
Sbjct: 1 MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSA 34
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 25.5 bits (57), Expect = 6.1
Identities = 7/30 (23%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 21 ELLMLTKDNE-TALHCAAQYGHTPVVSQLL 49
++ M+T DN +A + + V++++L
Sbjct: 475 KVGMITGDNWRSAEAISRELNLDLVIAEVL 504
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 25.6 bits (57), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 21 ELLMLTKDNE-TALHCAAQYGHTPVVSQLL 49
E++MLT D++ TA A G VV++++
Sbjct: 572 EIVMLTGDSKRTAEAVAGTLGIKKVVAEIM 601
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 25.5 bits (57), Expect = 6.9
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 21 ELLMLTKDNE-TALHCAAQYGHTPVVSQLL 49
++++L+ D E + + S L
Sbjct: 154 KIIILSGDKEDKVKELSKELNIQEYYSNLS 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.128 0.369
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,904,391
Number of extensions: 99067
Number of successful extensions: 956
Number of sequences better than 10.0: 1
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 386
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.5 bits)