BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2190
(976 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 331 bits (849), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 270/940 (28%), Positives = 429/940 (45%), Gaps = 133/940 (14%)
Query: 62 KVCTDIDIRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYH 121
+VC +DIRN ++ L++C+V+EG +QI L+ + +DF +++FPKL IT+YL +
Sbjct: 6 EVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFR 65
Query: 122 VSGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNP-- 179
V GL+S+ LFPNL +IRG+ L ++Y +F M +L+E+GL+ L +I +G+V I +N
Sbjct: 66 VYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNEL 125
Query: 180 ------DWKRI---TKKGSVVINDIKSKEACLQEGEPGARSGPEKC----------EFYW 220
DW RI + +V+N ++E + PG G C E W
Sbjct: 126 CYLATIDWSRILDSVEDNHIVLNKDDNEEC--GDICPGTAKGKTNCPATVINGQFVERCW 183
Query: 221 SNNDCQLI-----------KEIEECHPLCAGGCTG-KRAEDCFVCIGFIHDGHCLDQCPP 268
+++ CQ + E CH C G C+ C C F DG C++ CPP
Sbjct: 184 THSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPP 243
Query: 269 NLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPF 328
Y + + RC+ C + + Q ++
Sbjct: 244 PY----------------YHFQDWRCVNFSFCQDLHHKCKNSRRQGCH-------QYVIH 280
Query: 329 NGSCMEECPPGYNTTADETSXXXXXXXXXXXXGVH-------VKSIEVARSTKGCTVING 381
N C+ ECP GY T + ++ H + S+ A+ +GCTVING
Sbjct: 281 NNKCIPECPSGY--TMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
Query: 382 SLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHGEREIIR 441
SL I I+ G++ + ELE LG+I I+G+LKI S + SLSF + L+ +IR
Sbjct: 339 SLIINIRGGNN--LAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLR-------LIR 389
Query: 442 GDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIY 501
G+T E YS Y+L DN NL++LW WS + I +GK+ FH NPKLCL +I+
Sbjct: 390 GETLEIGNYSFYAL---DNQNLRQLWDWS------KHNLTITQGKLFFHYNPKLCLSEIH 440
Query: 502 ELINVTNITYDSDF-DVLKESNGDEFICGFSNLALVVLNKT--DVSIRFQLNENEKVPDN 558
++ V+ + D+ ++NGD+ C L + + + +R++ D
Sbjct: 441 KMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDL 500
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDIN---------SKNKTVEVM-NLEPAT 608
++LFY +A T+FD +C ++ W DI+ S+N +M L+P T
Sbjct: 501 LGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWT 560
Query: 609 EYAFFVK---IYNSQRI---VRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKH 662
+YA FVK ++ +R +S+I T T PS+P V +SS + L+W P
Sbjct: 561 QYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSD 620
Query: 663 PHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLRDLSDSTYAASHLMRFAKTTRKPLKECC 722
P+G + Y++ Q D + + +YC+ L+ L T++ ++ + E
Sbjct: 621 PNGNITHYLVFWERQAEDSELFEL-DYCLKGLK-LPSRTWSPPFESEDSQKHNQSEYE-- 676
Query: 723 GKFPCDFDHESFQYMTSQMQLIQQCDNYIFKYLQYNDLHKAYGGDLPS--------LGNI 774
D E + Q++++ + F+ + LH PS +GN
Sbjct: 677 -----DSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNA 731
Query: 775 SSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETL 834
+ R V+ E S + GL HF + AC ++ PEE RCS
Sbjct: 732 GNNEEHRPFEKVVNKE-SLVISGLRHFTGYRIELQACNQDT--------PEE-RCSVAAY 781
Query: 835 VMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSEN 894
V +RT + AD I + E+ + + + W P PNG+IV Y + Y+R G +
Sbjct: 782 VSARTMPEAKADDI-VGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRR-YGDEELH 839
Query: 895 MCRTRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWT 934
+C TRK + G L G+Y R+R SL G G WT
Sbjct: 840 LCDTRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWT 879
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 28/169 (16%)
Query: 22 NGSCMEECPPG-----KQLIPRDTLQP-QSASNEVSGNSKFDQTKEKVCTDIDIRNYVSS 75
N C+ ECP G L+ L P + + G D V+S
Sbjct: 281 NNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS--------------VTS 326
Query: 76 FDVLKDCTVVEGFVQINLI-DNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKLFPN 134
L+ CTV+ G + IN+ N+ A + E + EI+ YL L S+ F
Sbjct: 327 AQELRGCTVINGSLIINIRGGNNLAAELE-ANLGLIEEISGYLKIRRSYALVSLS-FFRK 384
Query: 135 LAIIRGNTL-IWDYTFSVFSMFNLQEI---GLHRLTHIMKGTVVILRNP 179
L +IRG TL I +Y+F NL+++ H LT I +G + NP
Sbjct: 385 LRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLT-ITQGKLFFHYNP 432
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 327 bits (839), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 268/958 (27%), Positives = 433/958 (45%), Gaps = 150/958 (15%)
Query: 62 KVCTDIDIRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYH 121
+VC +DIRN ++ L++C+V+EG +QI L+ + +DF +++FPKL IT+YL +
Sbjct: 6 EVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFR 65
Query: 122 VSGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNP-- 179
V GL+S+ LFPNL +IRG+ L ++Y +F M +L+E+GL+ L +I +G+V I +N
Sbjct: 66 VYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNEL 125
Query: 180 ------DWKRI---TKKGSVVINDIKSKEACLQEGEPGARSGPEKC----------EFYW 220
DW RI + +V+N ++E + PG G C E W
Sbjct: 126 CYLATIDWSRILDSVEDNHIVLNKDDNEEC--GDICPGTAKGKTNCPATVINGQFVERCW 183
Query: 221 SNNDCQLI-----------KEIEECHPLCAGGCTG-KRAEDCFVCIGFIHDGHCLDQCPP 268
+++ CQ + E CH C G C+ C C F DG C++ CPP
Sbjct: 184 THSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPP 243
Query: 269 NLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPF 328
Y + + RC+ C + + Q ++
Sbjct: 244 PY----------------YHFQDWRCVNFSFCQDLHHKCKNSRRQGCH-------QYVIH 280
Query: 329 NGSCMEECPPGYNTTADETSXXXXXXXXXXXXGVH-------VKSIEVARSTKGCTVING 381
N C+ ECP GY T + ++ H + S+ A+ +GCTVING
Sbjct: 281 NNKCIPECPSGY--TMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
Query: 382 SLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHGEREIIR 441
SL I I+ G++ + ELE LG+I I+G+LKI S + SLSF + L+ +IR
Sbjct: 339 SLIINIRGGNN--LAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLR-------LIR 389
Query: 442 GDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIY 501
G+T E YS Y+L DN NL++LW WS + I +GK+ FH NPKLCL +I+
Sbjct: 390 GETLEIGNYSFYAL---DNQNLRQLWDWS------KHNLTITQGKLFFHYNPKLCLSEIH 440
Query: 502 ELINVTNITYDSDF-DVLKESNGDEFICGFSNLALVVLNKT--DVSIRFQLNENEKVPDN 558
++ V+ + D+ ++NGD+ C L + + + +R++ D
Sbjct: 441 KMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDL 500
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDIN---------SKNKTVEVM-NLEPAT 608
++LFY +A T+FD +C ++ W DI+ S+N +M L+P T
Sbjct: 501 LGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWT 560
Query: 609 EYAFFVK---IYNSQRI---VRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKH 662
+YA FVK ++ +R +S+I T T PS+P V +SS + L+W P
Sbjct: 561 QYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSD 620
Query: 663 PHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLRDLSDSTYAASHLMRFAKTTRKPLKECC 722
P+G + Y++ Q D + + +YC+ L+ L T++ ++ + E
Sbjct: 621 PNGNITHYLVFWERQAEDSELFEL-DYCLKGLK-LPSRTWSPPFESEDSQKHNQSEYE-- 676
Query: 723 GKFPCDFDHESFQYMTSQMQLIQQCDNYIFKYLQYNDLHKA------------------Y 764
D E + Q++++ + F+ + LH +
Sbjct: 677 -----DSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNH 731
Query: 765 GGDLPSLGNI----SSRLPDREENDVLYPET----SYTMVGLGHFRSIVFTISACRKEQK 816
G ++P++ S+ +P E + + S + GL HF + AC ++
Sbjct: 732 GNNVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDT- 790
Query: 817 DKFLPYDPEEGRCSEETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGI 876
PEE RCS V +RT + AD I + E+ + + + W P PNG+
Sbjct: 791 -------PEE-RCSVAAYVSARTMPEAKADDI-VGPVTHEIFENNVVHLMWQEPKEPNGL 841
Query: 877 IVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWT 934
IV Y + Y+R G ++C TRK + G L G+Y R+R SL G G WT
Sbjct: 842 IVLYEVSYRR-YGDEELHLCDTRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWT 898
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 28/169 (16%)
Query: 22 NGSCMEECPPG-----KQLIPRDTLQP-QSASNEVSGNSKFDQTKEKVCTDIDIRNYVSS 75
N C+ ECP G L+ L P + + G D V+S
Sbjct: 281 NNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS--------------VTS 326
Query: 76 FDVLKDCTVVEGFVQINLI-DNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKLFPN 134
L+ CTV+ G + IN+ N+ A + E + EI+ YL L S+ F
Sbjct: 327 AQELRGCTVINGSLIINIRGGNNLAAELE-ANLGLIEEISGYLKIRRSYALVSLS-FFRK 384
Query: 135 LAIIRGNTL-IWDYTFSVFSMFNLQEI---GLHRLTHIMKGTVVILRNP 179
L +IRG TL I +Y+F NL+++ H LT I +G + NP
Sbjct: 385 LRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLT-ITQGKLFFHYNP 432
>pdb|3W14|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
pdb|3W14|F Chain F, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
Length = 609
Score = 249 bits (635), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 185/607 (30%), Positives = 291/607 (47%), Gaps = 98/607 (16%)
Query: 62 KVCTDIDIRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYH 121
+VC +DIRN ++ L++C+V+EG +QI L+ + +DF +++FPKL IT+YL +
Sbjct: 6 EVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFR 65
Query: 122 VSGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNP-- 179
V GL+S+ LFPNL +IRG+ L ++Y +F M +L+E+GL+ L +I +G+V I +N
Sbjct: 66 VYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNEL 125
Query: 180 ------DWKRI---TKKGSVVINDIKSKEACLQEGEPGARSGPEKC----------EFYW 220
DW RI + +V+N ++E + PG G C E W
Sbjct: 126 CYLATIDWSRILDSVEDNHIVLNKDDNEEC--GDICPGTAKGKTNCPATVINGQFVERCW 183
Query: 221 SNNDCQLI-----------KEIEECHPLCAGGCTG-KRAEDCFVCIGFIHDGHCLDQCPP 268
+++ CQ + E CH C G C+ C C F DG C++ CPP
Sbjct: 184 THSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPP 243
Query: 269 NLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPF 328
Y + + RC+ C + + Q ++
Sbjct: 244 PY----------------YHFQDWRCVNFSFCQDLHHKCKNSRRQGCH-------QYVIH 280
Query: 329 NGSCMEECPPGYNTTADETSXXXXXXXXXXXXGVH-------VKSIEVARSTKGCTVING 381
N C+ ECP GY T + ++ H + S+ A+ +GCTVING
Sbjct: 281 NNKCIPECPSGY--TMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
Query: 382 SLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHGEREIIR 441
SL I I+ G++ + ELE LG+I I+G+LKI S + SLSF + L+ +IR
Sbjct: 339 SLIINIRGGNN--LAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLR-------LIR 389
Query: 442 GDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIY 501
G+T E YS Y+L DN NL++LW WS + I +GK+ FH NPKLCL +I+
Sbjct: 390 GETLEIGNYSFYAL---DNQNLRQLWDWS------KHNLTITQGKLFFHYNPKLCLSEIH 440
Query: 502 ELINVTNITYDSDF-DVLKESNGDEFICGFSNLALVVLNKT--DVSIRFQLNENEKVPDN 558
++ V+ + D+ ++NGD+ C L + + + +R++ D
Sbjct: 441 KMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDL 500
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDIN---------SKNKTVEVM-NLEPAT 608
++LFY +A T+FD +C ++ W DI+ S+N +M L+P T
Sbjct: 501 LGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWT 560
Query: 609 EYAFFVK 615
+YA FVK
Sbjct: 561 QYAIFVK 567
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 28/169 (16%)
Query: 22 NGSCMEECPPG-----KQLIPRDTLQP-QSASNEVSGNSKFDQTKEKVCTDIDIRNYVSS 75
N C+ ECP G L+ L P + + G D V+S
Sbjct: 281 NNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS--------------VTS 326
Query: 76 FDVLKDCTVVEGFVQINLI-DNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKLFPN 134
L+ CTV+ G + IN+ N+ A + E + EI+ YL L S+ F
Sbjct: 327 AQELRGCTVINGSLIINIRGGNNLAAELE-ANLGLIEEISGYLKIRRSYALVSLS-FFRK 384
Query: 135 LAIIRGNTL-IWDYTFSVFSMFNLQEI---GLHRLTHIMKGTVVILRNP 179
L +IRG TL I +Y+F NL+++ H LT I +G + NP
Sbjct: 385 LRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLT-ITQGKLFFHYNP 432
>pdb|2HR7|A Chain A, Insulin Receptor (Domains 1-3)
pdb|2HR7|B Chain B, Insulin Receptor (Domains 1-3)
Length = 486
Score = 226 bits (575), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 160/508 (31%), Positives = 248/508 (48%), Gaps = 86/508 (16%)
Query: 62 KVCTDIDIRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYH 121
+VC +DIRN ++ L++C+V+EG +QI L+ + +DF +++FPKL IT+YL +
Sbjct: 6 EVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFR 65
Query: 122 VSGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNP-- 179
V GL+S+ LFPNL +IRG+ L ++Y +F M +L+E+GL+ L +I +G+V I +N
Sbjct: 66 VYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNEL 125
Query: 180 ------DWKRI---TKKGSVVINDIKSKEACLQEGEPGARSGPEKC----------EFYW 220
DW RI + +V+N ++E + PG G C E W
Sbjct: 126 CYLATIDWSRILDSVEDNHIVLNKDDNEEC--GDICPGTAKGKTNCPATVINGQFVERCW 183
Query: 221 SNNDCQLI-----------KEIEECHPLCAGGCTG-KRAEDCFVCIGFIHDGHCLDQCPP 268
+++ CQ + E CH C G C+ C C F DG C++ CPP
Sbjct: 184 THSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPP 243
Query: 269 NLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPF 328
Y + + RC+ C + + Q ++
Sbjct: 244 PY----------------YHFQDWRCVNFSFCQDLHHKCKNSRRQGCH-------QYVIH 280
Query: 329 NGSCMEECPPGYNTTADETSXXXXXXXXXXXXGVH-------VKSIEVARSTKGCTVING 381
N C+ ECP GY T + ++ H + S+ A+ +GCTVING
Sbjct: 281 NNKCIPECPSGY--TMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
Query: 382 SLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHGEREIIR 441
SL I I+ G++ + ELE LG+I I+G+LKI S + SLSF + L+ +IR
Sbjct: 339 SLIINIRGGNN--LAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLR-------LIR 389
Query: 442 GDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIY 501
G+T E YS Y+L DN NL++LW WS + I +GK+ FH NPKLCL +I+
Sbjct: 390 GETLEIGNYSFYAL---DNQNLRQLWDWS------KHNLTITQGKLFFHYNPKLCLSEIH 440
Query: 502 ELINVTNITYDSDF-DVLKESNGDEFIC 528
++ V+ + D+ ++NGD+ C
Sbjct: 441 KMEEVSGTKGRQERNDIALKTNGDKASC 468
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 28/169 (16%)
Query: 22 NGSCMEECPPG-----KQLIPRDTLQP-QSASNEVSGNSKFDQTKEKVCTDIDIRNYVSS 75
N C+ ECP G L+ L P + + G D V+S
Sbjct: 281 NNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS--------------VTS 326
Query: 76 FDVLKDCTVVEGFVQINLI-DNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKLFPN 134
L+ CTV+ G + IN+ N+ A + E + EI+ YL L S+ F
Sbjct: 327 AQELRGCTVINGSLIINIRGGNNLAAELE-ANLGLIEEISGYLKIRRSYALVSLS-FFRK 384
Query: 135 LAIIRGNTL-IWDYTFSVFSMFNLQEI---GLHRLTHIMKGTVVILRNP 179
L +IRG TL I +Y+F NL+++ H LT I +G + NP
Sbjct: 385 LRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLT-ITQGKLFFHYNP 432
>pdb|1IGR|A Chain A, Type 1 Insulin-Like Growth Factor Receptor (Domains 1-3)
Length = 478
Score = 222 bits (566), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 159/501 (31%), Positives = 233/501 (46%), Gaps = 88/501 (17%)
Query: 67 IDIRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLK 126
IDIRN L++CTV+EG++ I LI S A+D+ + FPKL ITEYL + V+GL+
Sbjct: 7 IDIRNDYQQLKRLENCTVIEGYLHILLI--SKAEDYRSYRFPKLTVITEYLLLFRVAGLE 64
Query: 127 SIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNP------- 179
S+G LFPNL +IRG L ++Y +F M NL++IGL+ L +I +G + I +N
Sbjct: 65 SLGDLFPNLTVIRGWKLFYNYALVIFEMTNLKDIGLYNLRNITRGAIRIEKNADLCYLST 124
Query: 180 -DWKRITKKGS--VVINDIKSKEACLQEGEPGARSGPEKCE----------FYWSNNDCQ 226
DW I S ++ + KE + PG CE W+ N CQ
Sbjct: 125 VDWSLILDAVSNNYIVGNKPPKEC--GDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQ 182
Query: 227 LI-----------KEIEECHPLCAGGCTGKRAED-CFVCIGFIHDGHCLDQCPPNLQGQV 274
+ + E CHP C G C+ + C C + + G C+ CPPN
Sbjct: 183 KMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPN----- 237
Query: 275 ATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCME 334
Y + RC+ R+ C N + SD + +G CM+
Sbjct: 238 -----------TYRFEGWRCVDRDFCAN-----------ILSAESSDSEGFVIHDGECMQ 275
Query: 335 ECPPGYNTTADET------SXXXXXXXXXXXXGVHVKSIEVARSTKGCTVINGSLGIQIQ 388
ECP G+ ++ + S+ A+ +GCT+ G+L I I+
Sbjct: 276 ECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIR 335
Query: 389 TGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHGEREIIRGDTSESS 448
G++ + ELE +G+I +TG++KI HS + SLSFLK+L+ I GE ++
Sbjct: 336 RGNN--IASELENFMGLIEVVTGYVKIRHSHALVSLSFLKNLRLILGEEQL--------- 384
Query: 449 VYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYELINVTN 508
NYS V DN NLQ+LW W + IK GK+ F NPKLC+ +IY + VT
Sbjct: 385 -EGNYSFYVLDNQNLQQLWDWDH------RNLTIKAGKMYFAFNPKLCVSEIYRMEEVTG 437
Query: 509 IT-YDSDFDVLKESNGDEFIC 528
S D+ +NG+ C
Sbjct: 438 TKGRQSKGDINTRNNGERASC 458
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 78/183 (42%), Gaps = 31/183 (16%)
Query: 10 VELSDKAKWRPFNGSCMEECPPG--------KQLIPRDTLQPQSASNEVSGNSKFDQTKE 61
E SD + +G CM+ECP G IP + P+ +E
Sbjct: 258 AESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCE------------EE 305
Query: 62 KVCTDIDIRNYVSSFDVLKDCTVVEGFVQINL-IDNSTAQDFENITFPKLRE-ITEYLSF 119
K ID V+S +L+ CT+ +G + IN+ N+ A + EN F L E +T Y+
Sbjct: 306 KKTKTID---SVTSAQMLQGCTIFKGNLLINIRRGNNIASELEN--FMGLIEVVTGYVKI 360
Query: 120 YHVSGLKSIGKLFPNLAIIRG-NTLIWDYTFSVFSMFNLQEI--GLHRLTHIMKGTVVIL 176
H L S+ NL +I G L +Y+F V NLQ++ HR I G +
Sbjct: 361 RHSHALVSL-SFLKNLRLILGEEQLEGNYSFYVLDNQNLQQLWDWDHRNLTIKAGKMYFA 419
Query: 177 RNP 179
NP
Sbjct: 420 FNP 422
>pdb|3W11|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
L1-cr In Complex With Human Insulin, Alpha-ct
Peptide(704-719) And Fab 83-7
pdb|3W12|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
L1-cr In Complex With High-affinity Insulin Analogue
[d-pro-b26]-dti-nh2, Alpha-ct Peptide(704-719) And Fab
83-7
pdb|3W13|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
L1-cr In Complex With High-affinity Insulin Analogue
[d-pro-b26]-dti-nh2, Alphact Peptide(693-719) And Fab
83-7
Length = 310
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 146/316 (46%), Gaps = 58/316 (18%)
Query: 62 KVCTDIDIRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYH 121
+VC +DIRN ++ L++C+V+EG +QI L+ + +DF +++FPKL IT+YL +
Sbjct: 6 EVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFR 65
Query: 122 VSGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNP-- 179
V GL+S+ LFPNL +IRG+ L ++Y +F M +L+E+GL+ L +I +G+V I +N
Sbjct: 66 VYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNEL 125
Query: 180 ------DWKRI---TKKGSVVINDIKSKEACLQEGEPGARSGPEKC----------EFYW 220
DW RI + +V+N ++E + PG G C E W
Sbjct: 126 CYLATIDWSRILDSVEDNHIVLNKDDNEEC--GDICPGTAKGKTNCPATVINGQFVERCW 183
Query: 221 SNNDCQLI-----------KEIEECHPLCAGGCTG-KRAEDCFVCIGFIHDGHCLDQCPP 268
+++ CQ + E CH C G C+ C C F DG C++ CPP
Sbjct: 184 THSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPP 243
Query: 269 NLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPF 328
Y + + RC+ C + + Q ++
Sbjct: 244 PY----------------YHFQDWRCVNFSFCQDLHHKCKNSRRQGCH-------QYVIH 280
Query: 329 NGSCMEECPPGYNTTA 344
N C+ ECP GY +
Sbjct: 281 NNKCIPECPSGYTMNS 296
>pdb|3I2T|A Chain A, Crystal Structure Of The Unliganded Drosophila Epidermal
Growth Factor Receptor Ectodomain
Length = 551
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 102/420 (24%), Positives = 170/420 (40%), Gaps = 92/420 (21%)
Query: 70 RNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIG 129
+Y + D +CT V+G +++ + N ++ + +RE+T Y+ HV K +
Sbjct: 24 HHYRNLRDRYTNCTYVDGNLELTWLPN---ENLDLSFLDNIREVTGYILISHVDVKKVV- 79
Query: 130 KLFPNLAIIRGNTL----IWDYTFSVFSMFN-LQEIGLHRLTHIMKGTVVI--------L 176
FP L IIRG TL + + +++F ++ + + + L ++ G V +
Sbjct: 80 --FPKLQIIRGRTLFSLSVEEEKYALFVTYSKMYTLEIPDLRDVLNGQVGFHNNYNLCHM 137
Query: 177 RNPDWKRITKKGSVVINDI----------KSKEACLQE--GEPGARSGPEKCEFY----- 219
R W I G+ + K E+C GE GP+ C+ +
Sbjct: 138 RTIQWSEIVSNGTDAYYNYDFTAPERECPKCHESCTHGCWGE-----GPKNCQKFSKLTC 192
Query: 220 ---WSNNDCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVAT 276
+ C K E CH CAGGCTG +DC C F +G C ++CPP + T
Sbjct: 193 SPQCAGGRCYGPKPRECCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTT 252
Query: 277 LQRILYGGIRYSYMNRRCLTREEC----LNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSC 332
+Y+Y C+ +EC L + ++ PQ+ + P NG C
Sbjct: 253 YVLETNPEGKYAY-GATCV--KECPGHLLRDNGACVRSCPQD---KMDKGGECVPCNGPC 306
Query: 333 MEECPPGYNTTADETSXXXXXXXXXXXXGVHVKSIEVARSTKGCTVINGSLGIQIQT--G 390
+ CP GV V S + CTVI+G++ I QT G
Sbjct: 307 PKTCP-----------------------GVTVLHAGNIDSFRNCTVIDGNIRILDQTFSG 343
Query: 391 DSEV------------VHQELEKGLGMITNITGHLKISHSLP-IQSLSFLKSLQSIHGER 437
+V + E + + ITG+L I + P ++LS+ ++L++IHG +
Sbjct: 344 FQDVYANYTMGPRYIPLDPERLEVFSTVKEITGYLNIEGTHPQFRNLSYFRNLETIHGRQ 403
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 110/295 (37%), Gaps = 72/295 (24%)
Query: 9 VVELSDKAKWRPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFDQTKE------- 61
V+E + + K+ + +C++ECP L+ A K D+ E
Sbjct: 254 VLETNPEGKY-AYGATCVKECP-------GHLLRDNGACVRSCPQDKMDKGGECVPCNGP 305
Query: 62 --KVCTDIDIRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQD-FENIT------------ 106
K C + + + + D ++CTV++G ++I S QD + N T
Sbjct: 306 CPKTCPGVTVL-HAGNIDSFRNCTVIDGNIRILDQTFSGFQDVYANYTMGPRYIPLDPER 364
Query: 107 ---FPKLREITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMF--NLQEIG 161
F ++EIT YL+ F NL I G L+ + F+ ++ +L +
Sbjct: 365 LEVFSTVKEITGYLNIEGTHPQFRNLSYFRNLETIHGRQLM-ESMFAALAIVKSSLYSLE 423
Query: 162 LHRLTHIMKGTVVILRNPD--------WKRITKK--GSVVINDIKSKEACLQEGEPGARS 211
+ L I G+VVI N D W I K+ V +N+ + C + G +
Sbjct: 424 MRNLKQISSGSVVIQHNRDLCYVSNIRWPAIQKEPEQKVWVNENLRADLCEKNGTICS-- 481
Query: 212 GPEKCEFYWSNNDCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQC 266
++C N D GC G + C C F +G C+ C
Sbjct: 482 --DQC-----NED----------------GCWGAGTDQCLNCKNFNFNGTCIADC 513
>pdb|3LTF|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTF|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTG|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
pdb|3LTG|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
Length = 601
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 102/420 (24%), Positives = 170/420 (40%), Gaps = 92/420 (21%)
Query: 70 RNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIG 129
+Y + D +CT V+G +++ + N ++ + +RE+T Y+ HV K +
Sbjct: 24 HHYRNLRDRYTNCTYVDGNLELTWLPN---ENLDLSFLDNIREVTGYILISHVDVKKVV- 79
Query: 130 KLFPNLAIIRGNTL----IWDYTFSVFSMFN-LQEIGLHRLTHIMKGTVVI--------L 176
FP L IIRG TL + + +++F ++ + + + L ++ G V +
Sbjct: 80 --FPKLQIIRGRTLFSLSVEEEKYALFVTYSKMYTLEIPDLRDVLNGQVGFHNNYNLCHM 137
Query: 177 RNPDWKRITKKGSVVINDI----------KSKEACLQE--GEPGARSGPEKCEFY----- 219
R W I G+ + K E+C GE GP+ C+ +
Sbjct: 138 RTIQWSEIVSNGTDAYYNYDFTAPERECPKCHESCTHGCWGE-----GPKNCQKFSKLTC 192
Query: 220 ---WSNNDCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVAT 276
+ C K E CH CAGGCTG +DC C F +G C ++CPP + T
Sbjct: 193 SPQCAGGRCYGPKPRECCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTT 252
Query: 277 LQRILYGGIRYSYMNRRCLTREEC----LNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSC 332
+Y+Y C+ +EC L + ++ PQ+ + P NG C
Sbjct: 253 YVLETNPEGKYAY-GATCV--KECPGHLLRDNGACVRSCPQD---KMDKGGECVPCNGPC 306
Query: 333 MEECPPGYNTTADETSXXXXXXXXXXXXGVHVKSIEVARSTKGCTVINGSLGIQIQT--G 390
+ CP GV V S + CTVI+G++ I QT G
Sbjct: 307 PKTCP-----------------------GVTVLHAGNIDSFRNCTVIDGNIRILDQTFSG 343
Query: 391 DSEV------------VHQELEKGLGMITNITGHLKISHSLP-IQSLSFLKSLQSIHGER 437
+V + E + + ITG+L I + P ++LS+ ++L++IHG +
Sbjct: 344 FQDVYANYTMGPRYIPLDPERLEVFSTVKEITGYLNIEGTHPQFRNLSYFRNLETIHGRQ 403
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 125/322 (38%), Gaps = 72/322 (22%)
Query: 9 VVELSDKAKWRPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFDQTKE------- 61
V+E + + K+ + +C++ECP L+ A K D+ E
Sbjct: 254 VLETNPEGKY-AYGATCVKECP-------GHLLRDNGACVRSCPQDKMDKGGECVPCNGP 305
Query: 62 --KVCTDIDIRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQD-FENIT------------ 106
K C + + + + D ++CTV++G ++I S QD + N T
Sbjct: 306 CPKTCPGVTVL-HAGNIDSFRNCTVIDGNIRILDQTFSGFQDVYANYTMGPRYIPLDPER 364
Query: 107 ---FPKLREITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMF--NLQEIG 161
F ++EIT YL+ F NL I G L+ + F+ ++ +L +
Sbjct: 365 LEVFSTVKEITGYLNIEGTHPQFRNLSYFRNLETIHGRQLM-ESMFAALAIVKSSLYSLE 423
Query: 162 LHRLTHIMKGTVVILRNPD--------WKRITKK--GSVVINDIKSKEACLQEG------ 205
+ L I G+VVI N D W I K+ V +N+ + C + G
Sbjct: 424 MRNLKQISSGSVVIQHNRDLCYVSNIRWPAIQKEPEQKVWVNENLRADLCEKNGTICSDQ 483
Query: 206 --EPGA-RSGPEKC----EFYWSNN---DCQLI--------KEIEECHPLCAGGCTGKRA 247
E G +G ++C F ++ DC I + + CHP C C G A
Sbjct: 484 CNEDGCWGAGTDQCLNCKNFNFNGTCIADCGYISNAYKFDNRTCKICHPECRT-CNGAGA 542
Query: 248 EDCFVCIGFIHDGHCLDQCPPN 269
+ C C+ HC+ +CP N
Sbjct: 543 DHCQECVHVRDGQHCVSECPKN 564
>pdb|3P11|A Chain A, Anti-EgfrHER3 FAB DL11 IN COMPLEX WITH DOMAINS I-Iii Of
The Her3 Extracellular Region
Length = 522
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 112/467 (23%), Positives = 175/467 (37%), Gaps = 91/467 (19%)
Query: 72 YVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKL 131
Y + + + + C VV G ++I L ++ F +RE+T Y+ + + L
Sbjct: 27 YQTLYKLYERCEVVMGNLEIVLTGHNADLSF----LQWIREVTGYV----LVAMNEFSTL 78
Query: 132 -FPNLAIIRGNTLIWDYTFSVFSMFN--------LQEIGLHRLTHIMKGTVVILRNP--- 179
PNL ++RG T ++D F++F M N L+++ L +LT I+ G V I +N
Sbjct: 79 PLPNLRVVRG-TQVYDGKFAIFVMLNYNTNSSHALRQLRLTQLTEILSGGVYIEKNDKLC 137
Query: 180 -----DWKRITKK--GSVVINDIKSKEACLQEGEPGARSGP--EKCEFY-------WSNN 223
DW+ I + +V+ D E G GP E C+ N
Sbjct: 138 HMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNG 197
Query: 224 DCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILYG 283
C + CH CAGGC+G + DCF C F G C+ +CP L T Q
Sbjct: 198 HCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNP 257
Query: 284 GIRYSYMNRRCLTREECLNNKRVTTKNF-----PQNMRMSYSDKAKWRPFNGSCMEECPP 338
+Y Y + C +N V + P M + + P G C + C
Sbjct: 258 HTKYQYGG---VCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKAC-- 312
Query: 339 GYNTTADETSXXXXXXXXXXXXGVHVKSIEVAR--STKGCTVINGSLGIQIQTGDSEVVH 396
G ++++ + CT I G+L I + + H
Sbjct: 313 -----------------EGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWH 355
Query: 397 Q------ELEKGLGMITNITGHLKISHSLP-IQSLSFLKSLQSIHGEREIIRGDTSESSV 449
+ E + ITG+L I P + + S +L +I G RG
Sbjct: 356 KIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRG------- 408
Query: 450 YSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLC 496
+SL++ N N+ L G R EI G+I N +LC
Sbjct: 409 ---FSLLIMKNLNVTSL--------GFRSLKEISAGRIYISANRQLC 444
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 99/261 (37%), Gaps = 51/261 (19%)
Query: 24 SCMEECPPGKQLIPRDTLQ---------PQSASNEVSGNSKFDQTKEKVCTDIDIRNYVS 74
SC+ CPP K + ++ L+ P++ SG S+F +I +V+
Sbjct: 281 SCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSG-SRFQTVDSS-----NIDGFVN 334
Query: 75 SFDVLKDCTVVEGFVQINLIDNSTAQDFENI-TFPKLREITEYLSFYHVSGLKSIGKLFP 133
+L + + + + A D E + F +REIT YL+ +F
Sbjct: 335 CTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFS 394
Query: 134 NLAIIRGNTLIWDYTFSVFSM--FNLQEIGLHRLTHIMKGTVVILRNP--------DWKR 183
NL I G +L ++ FS+ M N+ +G L I G + I N +W +
Sbjct: 395 NLTTIGGRSL-YNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTK 453
Query: 184 ITKKGSVVINDIKSKEACLQEGEPGARSGPEKCEFYWSNNDCQLIKEIEECHPLCA-GGC 242
+ + + DIK P + DC + E + C PLC+ GGC
Sbjct: 454 VLRGPTEERLDIKHNR-------------PRR--------DC--VAEGKVCDPLCSSGGC 490
Query: 243 TGKRAEDCFVCIGFIHDGHCL 263
G C C + G C+
Sbjct: 491 WGPGPGQCLSCRNYSRGGVCV 511
>pdb|1M6B|A Chain A, Structure Of The Her3 (Erbb3) Extracellular Domain
pdb|1M6B|B Chain B, Structure Of The Her3 (Erbb3) Extracellular Domain
Length = 621
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 112/467 (23%), Positives = 175/467 (37%), Gaps = 91/467 (19%)
Query: 72 YVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKL 131
Y + + + + C VV G ++I L ++ F +RE+T Y+ + + L
Sbjct: 27 YQTLYKLYERCEVVMGNLEIVLTGHNADLSF----LQWVREVTGYV----LVAMNEFSTL 78
Query: 132 -FPNLAIIRGNTLIWDYTFSVFSMFN--------LQEIGLHRLTHIMKGTVVILRNP--- 179
PNL ++RG T ++D F++F M N L+++ L +LT I+ G V I +N
Sbjct: 79 PLPNLRVVRG-TQVYDGKFAIFVMLNYNTNSSHALRQLRLTQLTEILSGGVYIEKNDKLC 137
Query: 180 -----DWKRITKK--GSVVINDIKSKEACLQEGEPGARSGP--EKCEFY-------WSNN 223
DW+ I + +V+ D E G GP E C+ N
Sbjct: 138 HMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNG 197
Query: 224 DCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILYG 283
C + CH CAGGC+G + DCF C F G C+ +CP L T Q
Sbjct: 198 HCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNP 257
Query: 284 GIRYSYMNRRCLTREECLNNKRVTTKNF-----PQNMRMSYSDKAKWRPFNGSCMEECPP 338
+Y Y + C +N V + P M + + P G C + C
Sbjct: 258 HTKYQYGG---VCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKAC-- 312
Query: 339 GYNTTADETSXXXXXXXXXXXXGVHVKSIEVAR--STKGCTVINGSLGIQIQTGDSEVVH 396
G ++++ + CT I G+L I + + H
Sbjct: 313 -----------------EGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWH 355
Query: 397 Q------ELEKGLGMITNITGHLKISHSLP-IQSLSFLKSLQSIHGEREIIRGDTSESSV 449
+ E + ITG+L I P + + S +L +I G RG
Sbjct: 356 KIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRG------- 408
Query: 450 YSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLC 496
+SL++ N N+ L G R EI G+I N +LC
Sbjct: 409 ---FSLLIMKNLNVTSL--------GFRSLKEISAGRIYISANRQLC 444
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 110/303 (36%), Gaps = 61/303 (20%)
Query: 24 SCMEECPPGKQLIPRDTLQ---------PQSASNEVSGNSKFDQTKEKVCTDIDIRNYVS 74
SC+ CPP K + ++ L+ P++ SG S+F +I +V+
Sbjct: 281 SCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSG-SRFQTVDSS-----NIDGFVN 334
Query: 75 SFDVLKDCTVVEGFVQINLIDNSTAQDFENI-TFPKLREITEYLSFYHVSGLKSIGKLFP 133
+L + + + + A D E + F +REIT YL+ +F
Sbjct: 335 CTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFS 394
Query: 134 NLAIIRGNTLIWDYTFSVFSM--FNLQEIGLHRLTHIMKGTVVILRNP--------DWKR 183
NL I G +L ++ FS+ M N+ +G L I G + I N +W +
Sbjct: 395 NLTTIGGRSL-YNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTK 453
Query: 184 ITKKGSVVINDIK---SKEACLQEGE-------PGARSGPE-----KCEFYWSNNDC--- 225
+ + + DIK + C+ EG+ G GP C Y C
Sbjct: 454 VLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTH 513
Query: 226 ---------QLIKEIE--ECHPLC-----AGGCTGKRAEDCFVCIGFIHDGHCLDQCPPN 269
+ E E CHP C C G ++ C C F HC+ CP
Sbjct: 514 CNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSCPHG 573
Query: 270 LQG 272
+ G
Sbjct: 574 VLG 576
>pdb|3U2P|A Chain A, Crystal Structure Of N-Terminal Three Extracellular
Domains Of Erbb4HER4
Length = 497
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 117/486 (24%), Positives = 169/486 (34%), Gaps = 118/486 (24%)
Query: 80 KDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKL-FPNLAII 138
++C VV G ++I I+++ F +RE+T Y+ + L L NL II
Sbjct: 29 ENCEVVMGNLEITSIEHNRDLSF----LRSVREVTGYV----LVALNQFRYLPLENLRII 80
Query: 139 RGNTLIWD-YTFSVF------SMFNLQEIGLHRLTHIMKGTVVILRNP--------DWKR 183
RG L D Y ++F F LQE+GL LT I+ G V + +N W+
Sbjct: 81 RGTKLYEDRYALAIFLNYRKDGNFGLQELGLKNLTEILNGGVYVDQNKFLCYADTIHWQD 140
Query: 184 ITKK---GSVVINDIKSKEAC--LQEGEPGARSGPEKCEFYWSNNDCQLIKEI------- 231
I + ++ + C + G GP + N CQ +
Sbjct: 141 IVRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGP-------TENHCQTLTRTVCAEQCD 193
Query: 232 ---------EECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILY 282
+ CH CAGGC+G + DCF C+ F G C+ QCP T Q
Sbjct: 194 GRCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQCPQTFVYNPTTFQLEHN 253
Query: 283 GGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNT 342
+Y+Y K P N + S SC+ CP
Sbjct: 254 FNAKYTY--------------GAFCVKKCPHNFVVDSS----------SCVRACPSSKME 289
Query: 343 TAD---ETSXXXXXXXXXXXXGVHVKSIEVARSTKG--------CTVINGSLGIQIQTG- 390
+ + G+ S+ A++ CT ING+L I + TG
Sbjct: 290 VEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNL-IFLVTGI 348
Query: 391 ------DSEVVHQELEKGLGMITNITGHLKISHSLP-IQSLSFLKSLQSIHGEREIIRGD 443
E + E + ITG L I P + S +L +I G
Sbjct: 349 HGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGR------- 401
Query: 444 TSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYEL 503
+YS SL++ + L Q K EI G I DN LC Y
Sbjct: 402 ----VLYSGLSLLILKQQGITSL-------QFQSLK-EISAGNIYITDNSNLCY---YHT 446
Query: 504 INVTNI 509
IN T +
Sbjct: 447 INWTTL 452
>pdb|2AHX|A Chain A, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
pdb|2AHX|B Chain B, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
Length = 617
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 115/485 (23%), Positives = 167/485 (34%), Gaps = 116/485 (23%)
Query: 80 KDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKL-FPNLAII 138
++C VV G ++I I+++ F +RE+T Y+ + L L NL II
Sbjct: 30 ENCEVVMGNLEITSIEHNRDLSF----LRSVREVTGYV----LVALNQFRYLPLENLRII 81
Query: 139 RGNTLIWD-YTFSVF------SMFNLQEIGLHRLTHIMKGTVVILRNP--------DWKR 183
RG L D Y ++F F LQE+GL LT I+ G V + +N W+
Sbjct: 82 RGTKLYEDRYALAIFLNYRKDGNFGLQELGLKNLTEILNGGVYVDQNKFLCYADTIHWQD 141
Query: 184 ITKK---GSVVINDIKSKEAC--LQEGEPGARSGPEKCEFYWSNNDCQLIKEI------- 231
I + ++ + C + G GP + N CQ +
Sbjct: 142 IVRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGP-------TENHCQTLTRTVCAEQCD 194
Query: 232 ---------EECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILY 282
+ CH CAGGC+G + DCF C+ F G C+ QCP T Q
Sbjct: 195 GRCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQCPQTFVYNPTTFQLEHN 254
Query: 283 GGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNT 342
+Y+Y K P N + S SC+ CP
Sbjct: 255 FNAKYTY--------------GAFCVKKCPHNFVVDSS----------SCVRACPSSKME 290
Query: 343 TAD---ETSXXXXXXXXXXXXGVHVKSIEVARSTKG--------CTVINGSLGIQIQT-- 389
+ + G+ S+ A++ CT ING+L +
Sbjct: 291 VEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIH 350
Query: 390 GDS----EVVHQELEKGLGMITNITGHLKISHSLP-IQSLSFLKSLQSIHGEREIIRGDT 444
GD E + E + ITG L I P + S +L +I G
Sbjct: 351 GDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGR-------- 402
Query: 445 SESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYELI 504
+YS SL++ + L S EI G I DN LC Y I
Sbjct: 403 ---VLYSGLSLLILKQQGITSLQFQS--------LKEISAGNIYITDNSNLCY---YHTI 448
Query: 505 NVTNI 509
N T +
Sbjct: 449 NWTTL 453
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/309 (20%), Positives = 105/309 (33%), Gaps = 72/309 (23%)
Query: 24 SCMEECPPGKQLI---------PRDTLQPQSASNEVSGNSKFDQTKEKVCTDIDIRNYVS 74
SC+ CP K + P + P++ +G+ QT + S
Sbjct: 279 SCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDS-----------S 327
Query: 75 SFDVLKDCTVVEGFVQINLIDNSTAQDFENI---------TFPKLREITEYLSFYHVSGL 125
+ D +CT + G + I L+ + I F +REIT +L+
Sbjct: 328 NIDKFINCTKINGNL-IFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPN 386
Query: 126 KSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNPD----- 180
+ +F NL I G L + + + + L I G + I N +
Sbjct: 387 MTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYH 446
Query: 181 ---WKRI--TKKGSVVINDIKSKEACLQEG---------EPGARSGPEKC---------- 216
W + T +VI D + E C EG + GP++C
Sbjct: 447 TINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGR 506
Query: 217 -----------EFYWSNNDCQLIKEIEECHPLCAG--GCTGKRAEDCFVCIGFIHDGHCL 263
EF ND ++ +C + G C G ++C C F +C+
Sbjct: 507 ICIESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNCV 566
Query: 264 DQCPPNLQG 272
++CP LQG
Sbjct: 567 EKCPDGLQG 575
>pdb|3U7U|A Chain A, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|B Chain B, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|C Chain C, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|D Chain D, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|E Chain E, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|F Chain F, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 615
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 116/485 (23%), Positives = 168/485 (34%), Gaps = 116/485 (23%)
Query: 80 KDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKL-FPNLAII 138
++C VV G ++I I+++ F +RE+T Y+ + L L NL II
Sbjct: 29 ENCEVVMGNLEITSIEHNRDLSF----LRSVREVTGYV----LVALNQFRYLPLENLRII 80
Query: 139 RGNTLIWD-YTFSVF------SMFNLQEIGLHRLTHIMKGTVVILRNP--------DWKR 183
RG L D Y ++F F LQE+GL LT I+ G V + +N W+
Sbjct: 81 RGTKLYEDRYALAIFLNYRKDGNFGLQELGLKNLTEILNGGVYVDQNKFLCYADTIHWQD 140
Query: 184 ITKK---GSVVINDIKSKEAC--LQEGEPGARSGPEKCEFYWSNNDCQLIKEI------- 231
I + ++ + C + G GP + N CQ +
Sbjct: 141 IVRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGP-------TENHCQTLTRTVCAEQCD 193
Query: 232 ---------EECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILY 282
+ CH CAGGC+G + DCF C+ F G C+ QCP T Q
Sbjct: 194 GRCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQCPQTFVYNPTTFQLEHN 253
Query: 283 GGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNT 342
+Y+Y K P N + S SC+ CP
Sbjct: 254 FNAKYTY--------------GAFCVKKCPHNFVVDSS----------SCVRACPSSKME 289
Query: 343 TAD---ETSXXXXXXXXXXXXGVHVKSIEVARSTKG--------CTVINGSLGIQIQT-- 389
+ + G+ S+ A++ CT ING+L +
Sbjct: 290 VEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIH 349
Query: 390 GDS----EVVHQELEKGLGMITNITGHLKISHSLP-IQSLSFLKSLQSIHGEREIIRGDT 444
GD E + E + ITG L I P + S +L +I G
Sbjct: 350 GDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGR-------- 401
Query: 445 SESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYELI 504
+YS SL++ + L Q K EI G I DN LC Y I
Sbjct: 402 ---VLYSGLSLLILKQQGITSL-------QFQSLK-EISAGNIYITDNSNLCY---YHTI 447
Query: 505 NVTNI 509
N T +
Sbjct: 448 NWTTL 452
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/309 (20%), Positives = 105/309 (33%), Gaps = 72/309 (23%)
Query: 24 SCMEECPPGKQLI---------PRDTLQPQSASNEVSGNSKFDQTKEKVCTDIDIRNYVS 74
SC+ CP K + P + P++ +G+ QT + S
Sbjct: 278 SCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDS-----------S 326
Query: 75 SFDVLKDCTVVEGFVQINLIDNSTAQDFENI---------TFPKLREITEYLSFYHVSGL 125
+ D +CT + G + I L+ + I F +REIT +L+
Sbjct: 327 NIDKFINCTKINGNL-IFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPN 385
Query: 126 KSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNPD----- 180
+ +F NL I G L + + + + L I G + I N +
Sbjct: 386 MTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYH 445
Query: 181 ---WKRI--TKKGSVVINDIKSKEACLQEG---------EPGARSGPEKC---------- 216
W + T +VI D + E C EG + GP++C
Sbjct: 446 TINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGR 505
Query: 217 -----------EFYWSNNDCQLIKEIEECHPLCAG--GCTGKRAEDCFVCIGFIHDGHCL 263
EF ND ++ +C + G C G ++C C F +C+
Sbjct: 506 ICIESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNCV 565
Query: 264 DQCPPNLQG 272
++CP LQG
Sbjct: 566 EKCPDGLQG 574
>pdb|3U9U|E Chain E, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
pdb|3U9U|F Chain F, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
Length = 625
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 115/485 (23%), Positives = 167/485 (34%), Gaps = 116/485 (23%)
Query: 80 KDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKL-FPNLAII 138
++C VV G ++I I+++ F +RE+T Y+ + L L NL II
Sbjct: 29 ENCEVVMGNLEITSIEHNRDLSF----LRSVREVTGYV----LVALNQFRYLPLENLRII 80
Query: 139 RGNTLIWD-YTFSVF------SMFNLQEIGLHRLTHIMKGTVVILRNP--------DWKR 183
RG L D Y ++F F LQE+GL LT I+ G V + +N W+
Sbjct: 81 RGTKLYEDRYALAIFLNYRKDGNFGLQELGLKNLTEILNGGVYVDQNKFLCYADTIHWQD 140
Query: 184 ITKK---GSVVINDIKSKEAC--LQEGEPGARSGPEKCEFYWSNNDCQLIKEI------- 231
I + ++ + C + G GP + N CQ +
Sbjct: 141 IVRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGP-------TENHCQTLTRTVCAEQCD 193
Query: 232 ---------EECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILY 282
+ CH CAGGC+G + DCF C+ F G C+ QCP T Q
Sbjct: 194 GRCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQCPQTFVYNPTTFQLEHN 253
Query: 283 GGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNT 342
+Y+Y K P N + S SC+ CP
Sbjct: 254 FNAKYTY--------------GAFCVKKCPHNFVVDSS----------SCVRACPSSKME 289
Query: 343 TAD---ETSXXXXXXXXXXXXGVHVKSIEVARSTKG--------CTVINGSLGIQIQT-- 389
+ + G+ S+ A++ CT ING+L +
Sbjct: 290 VEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIH 349
Query: 390 GDS----EVVHQELEKGLGMITNITGHLKISHSLP-IQSLSFLKSLQSIHGEREIIRGDT 444
GD E + E + ITG L I P + S +L +I G
Sbjct: 350 GDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGR-------- 401
Query: 445 SESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYELI 504
+YS SL++ + L S EI G I DN LC Y I
Sbjct: 402 ---VLYSGLSLLILKQQGITSLQFQS--------LKEISAGNIYITDNSNLCY---YHTI 447
Query: 505 NVTNI 509
N T +
Sbjct: 448 NWTTL 452
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/309 (20%), Positives = 105/309 (33%), Gaps = 72/309 (23%)
Query: 24 SCMEECPPGKQLI---------PRDTLQPQSASNEVSGNSKFDQTKEKVCTDIDIRNYVS 74
SC+ CP K + P + P++ +G+ QT + S
Sbjct: 278 SCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDS-----------S 326
Query: 75 SFDVLKDCTVVEGFVQINLIDNSTAQDFENI---------TFPKLREITEYLSFYHVSGL 125
+ D +CT + G + I L+ + I F +REIT +L+
Sbjct: 327 NIDKFINCTKINGNL-IFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPN 385
Query: 126 KSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNPD----- 180
+ +F NL I G L + + + + L I G + I N +
Sbjct: 386 MTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYH 445
Query: 181 ---WKRI--TKKGSVVINDIKSKEACLQEG---------EPGARSGPEKC---------- 216
W + T +VI D + E C EG + GP++C
Sbjct: 446 TINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGR 505
Query: 217 -----------EFYWSNNDCQLIKEIEECHPLCAG--GCTGKRAEDCFVCIGFIHDGHCL 263
EF ND ++ +C + G C G ++C C F +C+
Sbjct: 506 ICIESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNCV 565
Query: 264 DQCPPNLQG 272
++CP LQG
Sbjct: 566 EKCPDGLQG 574
>pdb|1N8Y|C Chain C, Crystal Structure Of The Extracellular Region Of Rat Her2
Length = 608
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 130/549 (23%), Positives = 198/549 (36%), Gaps = 139/549 (25%)
Query: 62 KVCTDIDIRNYVSS-----FDVLKD----CTVVEGFVQINLIDNSTAQDFENITFPKLRE 112
+VCT D++ + + D+L+ C VV+G +++ + + + F ++E
Sbjct: 2 QVCTGTDMKLRLPASPETHLDMLRHLYQGCQVVQGNLELTYVPANASLSF----LQDIQE 57
Query: 113 ITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIWD-YTFSVF----------------SMF 155
+ Y+ H + +K + L I+RG L D Y +V +
Sbjct: 58 VQGYMLIAH-NQVKRVP--LQRLRIVRGTQLFEDKYALAVLDNRDPQDNVAASTPGRTPE 114
Query: 156 NLQEIGLHRLTHIMKGTVVILRNPD--------WKRITKKG---SVVINDIKSKEACLQE 204
L+E+ L LT I+KG V+I NP WK + +K + V D AC
Sbjct: 115 GLRELQLRSLTEILKGGVLIRGNPQLCYQDMVLWKDVFRKNNQLAPVDIDTNRSRAC--- 171
Query: 205 GEPGARSGPEKCEFYWSNNDCQLIK---------------EIEECHPLCAGGCTGKRAED 249
P A + + + S DCQ++ + CH CA GCTG + D
Sbjct: 172 -PPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSD 230
Query: 250 CFVCIGFIHDGHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTK 309
C C+ F H G C CP + T + + RY++ C+T C N T
Sbjct: 231 CLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTF-GASCVT--TCPYNYLSTEV 287
Query: 310 NFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNTTADETSXXXXXXXXXXXX----GVHVK 365
GSC CPP E G+ ++
Sbjct: 288 --------------------GSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGME 327
Query: 366 SIEVARSTK--------GCTVINGSLGIQIQTGDSE------VVHQELEKGLGMITNITG 411
+ AR+ GC I GSL ++ D + + E + + ITG
Sbjct: 328 HLRGARAITSDNVQEFDGCKKIFGSLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEITG 387
Query: 412 HLKISHSLP--IQSLSFLKSLQSIHGEREIIRGDTSESSVYSNYSLIVWDNPNLQELWGW 469
+L IS + P ++ LS ++L+ IIRG YS LQ L G
Sbjct: 388 YLYIS-AWPDSLRDLSVFQNLR-------IIRGRILHDGAYSL---------TLQGL-GI 429
Query: 470 SNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYELINVTNITYDSDF-----DVLKESNGD 524
+L G R E+ G L H N LC V + +D F +L N
Sbjct: 430 HSL--GLRSLRELGSGLALIHRNAHLCF--------VHTVPWDQLFRNPHQALLHSGNRP 479
Query: 525 EFICGFSNL 533
E CG L
Sbjct: 480 EEDCGLEGL 488
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 90/248 (36%), Gaps = 57/248 (22%)
Query: 106 TFPKLREITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIWDYTFSV-FSMFNLQEIGLHR 164
F L EIT YL +F NL IIRG ++ D +S+ + +GL
Sbjct: 378 VFETLEEITGYLYISAWPDSLRDLSVFQNLRIIRGR-ILHDGAYSLTLQGLGIHSLGLRS 436
Query: 165 LTHIMKGTVVILRNPD--------WKRITKKGSVVINDIKSKEACLQEGEPGARSGPEKC 216
L + G +I RN W ++ + +A L G + PE+
Sbjct: 437 LRELGSGLALIHRNAHLCFVHTVPWDQLFRN---------PHQALLHSG-----NRPEE- 481
Query: 217 EFYWSNNDCQLIKEIEECHPLCAGG-CTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVA 275
DC L E C+ LCA G C G C C F+ C+++C
Sbjct: 482 -------DCGL--EGLVCNSLCAHGHCWGPGPTQCVNCSHFLRGQECVEEC--------- 523
Query: 276 TLQRILYGGIRYSYMNRRCL-TREECLNNKRVTTKNFPQNMRMSYSDKAKWRPF---NGS 331
R+ G R ++RCL EC +N + S +D+ + S
Sbjct: 524 ---RVWKGLPREYVSDKRCLPCHPEC------QPQNSSETCFGSEADQCAACAHYKDSSS 574
Query: 332 CMEECPPG 339
C+ CP G
Sbjct: 575 CVARCPSG 582
>pdb|2A91|A Chain A, Crystal Structure Of Erbb2 Domains 1-3
Length = 517
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 126/511 (24%), Positives = 182/511 (35%), Gaps = 133/511 (26%)
Query: 62 KVCTDIDIRNYVSS-----FDVLKD----CTVVEGFVQINLIDNSTAQDFENITFPKLRE 112
+VCT D++ + + D+L+ C VV+G +++ + + + F L++
Sbjct: 3 QVCTGTDMKLRLPASPETHLDMLRHLYQGCQVVQGNLELTYLPTNASLSF-------LQD 55
Query: 113 ITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIWD-YTFSVF---------------SMFN 156
I E + ++ + L I+RG L D Y +V S
Sbjct: 56 IQEVQGYVLIAHNQVRQVPLQRLRIVRGTQLFEDNYALAVLDNGDPLNNTTPVTGASPGG 115
Query: 157 LQEIGLHRLTHIMKGTVVILRNPD--------WKRITKKG---SVVINDIKSKEACLQEG 205
L+E+ L LT I+KG V+I RNP WK I K ++ + D AC
Sbjct: 116 LRELQLRSLTEILKGGVLIQRNPQLCYQDTILWKDIFHKNNQLALTLIDTNRSRAC-HPC 174
Query: 206 EP---GARSGPEKCEFYWSNNDCQLIKEI---------------EECHPLCAGGCTGKRA 247
P G+R E S+ DCQ + + CH CA GCTG +
Sbjct: 175 SPMCKGSRCWGE------SSEDCQSLTRTVCAGGCARCKGPLPTDCCHEQCAAGCTGPKH 228
Query: 248 EDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVT 307
DC C+ F H G C CP + T + + RY++ C+T C N T
Sbjct: 229 SDCLACLHFNHSGICELHCPALVTYNTDTFESMPNPEGRYTF-GASCVT--ACPYNYLST 285
Query: 308 TKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNTTADETSXXXXXXXXXXXXGV----- 362
GSC CP E V
Sbjct: 286 DV--------------------GSCTLVCPLHNQEVTAEDGTQKCEKCSKPCARVCYGLG 325
Query: 363 --HVKSIEVARST-----KGCTVINGSLGIQIQTGDSE------VVHQELEKGLGMITNI 409
H++ + S GC I GSL ++ D + + E + + I
Sbjct: 326 MEHLREVRAVTSANIQEFAGCKKIFGSLAFLPESFDGDPASNTAPLQPEQLQVFETLEEI 385
Query: 410 TGHLKISH---SLPIQSLSFLKSLQSIHGEREIIRGDTSESSVYSNYSLIVWDNPNLQEL 466
TG+L IS SLP LS ++LQ +IRG + YS LQ L
Sbjct: 386 TGYLYISAWPDSLP--DLSVFQNLQ-------VIRGRILHNGAYSL---------TLQGL 427
Query: 467 WGWSNLPDGQRPKFEIKKGKILFHDNPKLCL 497
G S L G R E+ G L H N LC
Sbjct: 428 -GISWL--GLRSLRELGSGLALIHHNTHLCF 455
>pdb|1N8Z|C Chain C, Crystal Structure Of Extracellular Domain Of Human Her2
Complexed With Herceptin Fab
Length = 607
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 128/519 (24%), Positives = 188/519 (36%), Gaps = 149/519 (28%)
Query: 62 KVCTDIDIRNYVSS-----FDVLKD----CTVVEGFVQINLIDNSTAQDFENITFPKLRE 112
+VCT D++ + + D+L+ C VV+G +++ + + + F L++
Sbjct: 2 QVCTGTDMKLRLPASPETHLDMLRHLYQGCQVVQGNLELTYLPTNASLSF-------LQD 54
Query: 113 ITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIWD-YTFSVF---------------SMFN 156
I E + ++ + L I+RG L D Y +V S
Sbjct: 55 IQEVQGYVLIAHNQVRQVPLQRLRIVRGTQLFEDNYALAVLDNGDPLNNTTPVTGASPGG 114
Query: 157 LQEIGLHRLTHIMKGTVVILRNPD--------WKRITKKG---SVVINDIKSKEACLQEG 205
L+E+ L LT I+KG V+I RNP WK I K ++ + D AC
Sbjct: 115 LRELQLRSLTEILKGGVLIQRNPQLCYQDTILWKDIFHKNNQLALTLIDTNRSRAC-HPC 173
Query: 206 EP---GARSGPEKCEFYWSNNDCQLIKEI---------------EECHPLCAGGCTGKRA 247
P G+R E S+ DCQ + + CH CA GCTG +
Sbjct: 174 SPMCKGSRCWGE------SSEDCQSLTRTVCAGGCARCKGPLPTDCCHEQCAAGCTGPKH 227
Query: 248 EDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLTR---------- 297
DC C+ F H G C CP + T + + RY++ C+T
Sbjct: 228 SDCLACLHFNHSGICELHCPALVTYNTDTFESMPNPEGRYTF-GASCVTACPYNYLSTDV 286
Query: 298 EEC-----LNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNTTADETSXXXX 352
C L+N+ VT ++ Q R K R G ME
Sbjct: 287 GSCTLVCPLHNQEVTAEDGTQ--RCEKCSKPCARVCYGLGME------------------ 326
Query: 353 XXXXXXXXGVHVKSIEVARST-----KGCTVINGSLGIQIQTGDSE------VVHQELEK 401
H++ + S GC I GSL ++ D + + E +
Sbjct: 327 ----------HLREVRAVTSANIQEFAGCKKIFGSLAFLPESFDGDPASNTAPLQPEQLQ 376
Query: 402 GLGMITNITGHLKISH---SLPIQSLSFLKSLQSIHGEREIIRGDTSESSVYSNYSLIVW 458
+ ITG+L IS SLP LS ++LQ +IRG + YS
Sbjct: 377 VFETLEEITGYLYISAWPDSLP--DLSVFQNLQ-------VIRGRILHNGAYSL------ 421
Query: 459 DNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCL 497
LQ L G S L G R E+ G L H N LC
Sbjct: 422 ---TLQGL-GISWL--GLRSLRELGSGLALIHHNTHLCF 454
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 71/202 (35%), Gaps = 41/202 (20%)
Query: 107 FPKLREITEYLSFYHVSGLKSIGKLFPNLAIIRGNTL--------IWDYTFSVFSMFNLQ 158
F L EIT YL +F NL +IRG L + S + +L+
Sbjct: 378 FETLEEITGYLYISAWPDSLPDLSVFQNLQVIRGRILHNGAYSLTLQGLGISWLGLRSLR 437
Query: 159 EIG-----LHRLTHIMKGTVV----ILRNPDWKRITKKGSVVINDIKSKEACLQEGEPGA 209
E+G +H TH+ V + RNP + + AC Q G
Sbjct: 438 ELGSGLALIHHNTHLCFVHTVPWDQLFRNPHQALLHTANRPEDECVGEGLACHQLCARGH 497
Query: 210 --RSGPEKC----EFYWSNN---DCQLIKEIEE----------CHPLC-----AGGCTGK 245
GP +C +F +C++++ + CHP C + C G
Sbjct: 498 CWGPGPTQCVNCSQFLRGQECVEECRVLQGLPREYVNARHCLPCHPECQPQNGSVTCFGP 557
Query: 246 RAEDCFVCIGFIHDGHCLDQCP 267
A+ C C + C+ +CP
Sbjct: 558 EADQCVACAHYKDPPFCVARCP 579
>pdb|1S78|A Chain A, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
pdb|1S78|B Chain B, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
pdb|3BE1|A Chain A, Dual Specific Bh1 Fab In Complex With The Extracellular
Domain Of Her2ERBB-2
pdb|3MZW|A Chain A, Her2 Extracelluar Region With Affinity Matured 3-Helix
Affibody Zher2:342
pdb|3N85|A Chain A, Crystallographic Trimer Of Her2 Extracellular Regions In
Complex With Tryptophan-Rich Antibody Fragment
Length = 624
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 128/519 (24%), Positives = 188/519 (36%), Gaps = 149/519 (28%)
Query: 62 KVCTDIDIRNYVSS-----FDVLKD----CTVVEGFVQINLIDNSTAQDFENITFPKLRE 112
+VCT D++ + + D+L+ C VV+G +++ + + + F L++
Sbjct: 2 QVCTGTDMKLRLPASPETHLDMLRHLYQGCQVVQGNLELTYLPTNASLSF-------LQD 54
Query: 113 ITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIWD-YTFSVF---------------SMFN 156
I E + ++ + L I+RG L D Y +V S
Sbjct: 55 IQEVQGYVLIAHNQVRQVPLQRLRIVRGTQLFEDNYALAVLDNGDPLNNTTPVTGASPGG 114
Query: 157 LQEIGLHRLTHIMKGTVVILRNPD--------WKRITKKG---SVVINDIKSKEACLQEG 205
L+E+ L LT I+KG V+I RNP WK I K ++ + D AC
Sbjct: 115 LRELQLRSLTEILKGGVLIQRNPQLCYQDTILWKDIFHKNNQLALTLIDTNRSRAC-HPC 173
Query: 206 EP---GARSGPEKCEFYWSNNDCQLIKEI---------------EECHPLCAGGCTGKRA 247
P G+R E S+ DCQ + + CH CA GCTG +
Sbjct: 174 SPMCKGSRCWGE------SSEDCQSLTRTVCAGGCARCKGPLPTDCCHEQCAAGCTGPKH 227
Query: 248 EDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLTR---------- 297
DC C+ F H G C CP + T + + RY++ C+T
Sbjct: 228 SDCLACLHFNHSGICELHCPALVTYNTDTFESMPNPEGRYTF-GASCVTACPYNYLSTDV 286
Query: 298 EEC-----LNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNTTADETSXXXX 352
C L+N+ VT ++ Q R K R G ME
Sbjct: 287 GSCTLVCPLHNQEVTAEDGTQ--RCEKCSKPCARVCYGLGME------------------ 326
Query: 353 XXXXXXXXGVHVKSIEVARST-----KGCTVINGSLGIQIQTGDSE------VVHQELEK 401
H++ + S GC I GSL ++ D + + E +
Sbjct: 327 ----------HLREVRAVTSANIQEFAGCKKIFGSLAFLPESFDGDPASNTAPLQPEQLQ 376
Query: 402 GLGMITNITGHLKISH---SLPIQSLSFLKSLQSIHGEREIIRGDTSESSVYSNYSLIVW 458
+ ITG+L IS SLP LS ++LQ +IRG + YS
Sbjct: 377 VFETLEEITGYLYISAWPDSLP--DLSVFQNLQ-------VIRGRILHNGAYSL------ 421
Query: 459 DNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCL 497
LQ L G S L G R E+ G L H N LC
Sbjct: 422 ---TLQGL-GISWL--GLRSLRELGSGLALIHHNTHLCF 454
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 71/202 (35%), Gaps = 41/202 (20%)
Query: 107 FPKLREITEYLSFYHVSGLKSIGKLFPNLAIIRGNTL--------IWDYTFSVFSMFNLQ 158
F L EIT YL +F NL +IRG L + S + +L+
Sbjct: 378 FETLEEITGYLYISAWPDSLPDLSVFQNLQVIRGRILHNGAYSLTLQGLGISWLGLRSLR 437
Query: 159 EIG-----LHRLTHIMKGTVV----ILRNPDWKRITKKGSVVINDIKSKEACLQEGEPGA 209
E+G +H TH+ V + RNP + + AC Q G
Sbjct: 438 ELGSGLALIHHNTHLCFVHTVPWDQLFRNPHQALLHTANRPEDECVGEGLACHQLCARGH 497
Query: 210 --RSGPEKC----EFYWSNN---DCQLIKEIEE----------CHPLC-----AGGCTGK 245
GP +C +F +C++++ + CHP C + C G
Sbjct: 498 CWGPGPTQCVNCSQFLRGQECVEECRVLQGLPREYVNARHCLPCHPECQPQNGSVTCFGP 557
Query: 246 RAEDCFVCIGFIHDGHCLDQCP 267
A+ C C + C+ +CP
Sbjct: 558 EADQCVACAHYKDPPFCVARCP 579
>pdb|1MOX|A Chain A, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
pdb|1MOX|B Chain B, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
Length = 501
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 109/486 (22%), Positives = 179/486 (36%), Gaps = 122/486 (25%)
Query: 71 NYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGK 130
+++S + +C VV G ++I + + F L+ I E ++ Y + L ++ +
Sbjct: 23 HFLSLQRMFNNCEVVLGNLEITYVQRNYDLSF-------LKTIQE-VAGYVLIALNTVER 74
Query: 131 L-FPNLAIIRGNTLIWD-YTFSVFSMFN-----LQEIGLHRLTHIMKGTVVILRNP---- 179
+ NL IIRGN + Y +V S ++ L+E+ + L I+ G V NP
Sbjct: 75 IPLENLQIIRGNMYYENSYALAVLSNYDANKTGLKELPMRNLQEILHGAVRFSNNPALCN 134
Query: 180 ----DWKRITKKG--SVVINDIKSKEACLQEGEPGA------RSGPEKCE-------FYW 220
W+ I S + D ++ Q+ +P +G E C+
Sbjct: 135 VESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQ 194
Query: 221 SNNDCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRI 280
+ C+ + CH CA GCTG R DC VC F + C D CPP +
Sbjct: 195 CSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPP----------LM 244
Query: 281 LYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGY 340
LY P +M + + K+ F +C+++CP Y
Sbjct: 245 LYN----------------------------PTTYQMDVNPEGKYS-FGATCVKKCPRNY 275
Query: 341 NTTADETSXXXXXXXXXXXXGVHVKSIEVARSTKGCTVINGSLGIQIQTGDSEVVHQELE 400
T + V+ + + C + +GI + DS ++
Sbjct: 276 VVTDHGSCVRACGADSYEMEEDGVR--KCKKCEGPCRKVCNGIGIG-EFKDSLSINATNI 332
Query: 401 KGLGMITNITGHLKI----------SHSLPI--QSLSFLKSLQSIHG------------- 435
K T+I+G L I +H+ P+ Q L LK+++ I G
Sbjct: 333 KHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTD 392
Query: 436 -----EREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFH 490
EIIRG T + + +SL V + N+ L G R EI G ++
Sbjct: 393 LHAFENLEIIRGRTKQ---HGQFSLAVV-SLNITSL--------GLRSLKEISDGDVIIS 440
Query: 491 DNPKLC 496
N LC
Sbjct: 441 GNKNLC 446
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 378 VINGSLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHG-- 435
V G+ Q G E L++ + G+L+I++ LSFLK++Q + G
Sbjct: 6 VCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYVQRNYDLSFLKTIQEVAGYV 65
Query: 436 -------ER------EIIRGDTSESSVYSN-YSLIVWDNPNLQELWGWSNLPDGQRPKFE 481
ER +IIRG+ Y N Y+L V N + + G LP R E
Sbjct: 66 LIALNTVERIPLENLQIIRGNM----YYENSYALAVLSNYDANKT-GLKELP--MRNLQE 118
Query: 482 IKKGKILFHDNPKLC 496
I G + F +NP LC
Sbjct: 119 ILHGAVRFSNNPALC 133
>pdb|1IVO|A Chain A, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains.
pdb|1IVO|B Chain B, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains
Length = 622
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 109/486 (22%), Positives = 179/486 (36%), Gaps = 122/486 (25%)
Query: 71 NYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGK 130
+++S + +C VV G ++I + + F L+ I E ++ Y + L ++ +
Sbjct: 23 HFLSLQRMFNNCEVVLGNLEITYVQRNYDLSF-------LKTIQE-VAGYVLIALNTVER 74
Query: 131 L-FPNLAIIRGNTLIWD-YTFSVFSMFN-----LQEIGLHRLTHIMKGTVVILRNP---- 179
+ NL IIRGN + Y +V S ++ L+E+ + L I+ G V NP
Sbjct: 75 IPLENLQIIRGNMYYENSYALAVLSNYDANKTGLKELPMRNLQEILHGAVRFSNNPALCN 134
Query: 180 ----DWKRITKKG--SVVINDIKSKEACLQEGEPGA------RSGPEKCE-------FYW 220
W+ I S + D ++ Q+ +P +G E C+
Sbjct: 135 VESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQ 194
Query: 221 SNNDCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRI 280
+ C+ + CH CA GCTG R DC VC F + C D CPP +
Sbjct: 195 CSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPP----------LM 244
Query: 281 LYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGY 340
LY P +M + + K+ F +C+++CP Y
Sbjct: 245 LYN----------------------------PTTYQMDVNPEGKYS-FGATCVKKCPRNY 275
Query: 341 NTTADETSXXXXXXXXXXXXGVHVKSIEVARSTKGCTVINGSLGIQIQTGDSEVVHQELE 400
T + V+ + + C + +GI + DS ++
Sbjct: 276 VVTDHGSCVRACGADSYEMEEDGVR--KCKKCEGPCRKVCNGIGIG-EFKDSLSINATNI 332
Query: 401 KGLGMITNITGHLKI----------SHSLPI--QSLSFLKSLQSIHG------------- 435
K T+I+G L I +H+ P+ Q L LK+++ I G
Sbjct: 333 KHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTD 392
Query: 436 -----EREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFH 490
EIIRG T + + +SL V + N+ L G R EI G ++
Sbjct: 393 LHAFENLEIIRGRTKQ---HGQFSLAVV-SLNITSL--------GLRSLKEISDGDVIIS 440
Query: 491 DNPKLC 496
N LC
Sbjct: 441 GNKNLC 446
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 125/323 (38%), Gaps = 69/323 (21%)
Query: 21 FNGSCMEECPPGKQLIPRDTLQPQSASNE-------VSGNSKFDQTKEKVCTDIDIRNYV 73
F +C+++CP + + ++ V K + KVC I I +
Sbjct: 263 FGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFK 322
Query: 74 SSFDV-------LKDCTVVEGFVQI-------NLIDNSTAQDFENITFPK-LREITEYLS 118
S + K+CT + G + I + ++ D + + K ++EIT +L
Sbjct: 323 DSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLL 382
Query: 119 FYHVSGLKSIGKLFPNLAIIRGNT-LIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILR 177
++ F NL IIRG T ++ +V S+ N+ +GL L I G V+I
Sbjct: 383 IQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSL-NITSLGLRSLKEISDGDVIISG 441
Query: 178 NPD--------WKRI----TKKGSVVINDIKSKEACLQEGE-------PGARSGPEKCEF 218
N + WK++ +K ++ N + + +C G+ P GPE +
Sbjct: 442 NKNLCYANTINWKKLFGTSGQKTKIISN--RGENSCKATGQVCHALCSPEGCWGPEPRDC 499
Query: 219 YWSNN---------DCQLIK----------EIEECHPLCAG-----GCTGKRAEDCFVCI 254
N C L++ E +CHP C CTG+ ++C C
Sbjct: 500 VSCRNVSRGRECVDKCNLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCA 559
Query: 255 GFIHDGHCLDQCPPNLQGQVATL 277
+I HC+ CP + G+ TL
Sbjct: 560 HYIDGPHCVKTCPAGVMGENNTL 582
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 378 VINGSLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHG-- 435
V G+ Q G E L++ + G+L+I++ LSFLK++Q + G
Sbjct: 6 VCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYVQRNYDLSFLKTIQEVAGYV 65
Query: 436 -------ER------EIIRGDTSESSVYSN-YSLIVWDNPNLQELWGWSNLPDGQRPKFE 481
ER +IIRG+ Y N Y+L V N + + G LP R E
Sbjct: 66 LIALNTVERIPLENLQIIRGNM----YYENSYALAVLSNYDANKT-GLKELP--MRNLQE 118
Query: 482 IKKGKILFHDNPKLC 496
I G + F +NP LC
Sbjct: 119 ILHGAVRFSNNPALC 133
>pdb|3NJP|A Chain A, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
pdb|3NJP|B Chain B, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
Length = 614
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 109/486 (22%), Positives = 179/486 (36%), Gaps = 122/486 (25%)
Query: 71 NYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGK 130
+++S + +C VV G ++I + + F L+ I E ++ Y + L ++ +
Sbjct: 23 HFLSLQRMFNNCEVVLGNLEITYVQRNYDLSF-------LKTIQE-VAGYVLIALNTVER 74
Query: 131 L-FPNLAIIRGNTLIWD-YTFSVFSMFN-----LQEIGLHRLTHIMKGTVVILRNP---- 179
+ NL IIRGN + Y +V S ++ L+E+ + L I+ G V NP
Sbjct: 75 IPLENLQIIRGNMYYENSYALAVLSNYDANKTGLKELPMRNLQEILHGAVRFSNNPALCN 134
Query: 180 ----DWKRITKKG--SVVINDIKSKEACLQEGEPGA------RSGPEKCE-------FYW 220
W+ I S + D ++ Q+ +P +G E C+
Sbjct: 135 VESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQ 194
Query: 221 SNNDCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRI 280
+ C+ + CH CA GCTG R DC VC F + C D CPP +
Sbjct: 195 CSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPP----------LM 244
Query: 281 LYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGY 340
LY P +M + + K+ F +C+++CP Y
Sbjct: 245 LYN----------------------------PTTYQMDVNPEGKYS-FGATCVKKCPRNY 275
Query: 341 NTTADETSXXXXXXXXXXXXGVHVKSIEVARSTKGCTVINGSLGIQIQTGDSEVVHQELE 400
T + V+ + + C + +GI + DS ++
Sbjct: 276 VVTDHGSCVRACGADSYEMEEDGVR--KCKKCEGPCRKVCNGIGIG-EFKDSLSINATNI 332
Query: 401 KGLGMITNITGHLKI----------SHSLPI--QSLSFLKSLQSIHG------------- 435
K T+I+G L I +H+ P+ Q L LK+++ I G
Sbjct: 333 KHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTD 392
Query: 436 -----EREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFH 490
EIIRG T + + +SL V + N+ L G R EI G ++
Sbjct: 393 LHAFENLEIIRGRTKQ---HGQFSLAVV-SLNITSL--------GLRSLKEISDGDVIIS 440
Query: 491 DNPKLC 496
N LC
Sbjct: 441 GNKNLC 446
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 126/323 (39%), Gaps = 69/323 (21%)
Query: 21 FNGSCMEECPPGKQLIPRDTLQPQSASNE-------VSGNSKFDQTKEKVCTDIDIRNYV 73
F +C+++CP + + ++ V K + KVC I I +
Sbjct: 263 FGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFK 322
Query: 74 SSFDV-------LKDCTVVEGFVQI-------NLIDNSTAQDFENITFPK-LREITEYLS 118
S + K+CT + G + I + ++ D + + K ++EIT +L
Sbjct: 323 DSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLL 382
Query: 119 FYHVSGLKSIGKLFPNLAIIRGNT-LIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILR 177
++ F NL IIRG T ++ +V S+ N+ +GL L I G V+I
Sbjct: 383 IQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSL-NITSLGLRSLKEISDGDVIISG 441
Query: 178 NPD--------WKRI----TKKGSVVINDIKSKEACLQEGE-------PGARSGPEKCEF 218
N + WK++ +K ++ N + + +C G+ P GPE +
Sbjct: 442 NKNLCYANTINWKKLFGTSGQKTKIISN--RGENSCKATGQVCHALCSPEGCWGPEPRDC 499
Query: 219 YWSNN---------DCQLIK----------EIEECHPLCAG-----GCTGKRAEDCFVCI 254
N C+L++ E +CHP C CTG+ ++C C
Sbjct: 500 VSCRNVSRGRECVDKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCA 559
Query: 255 GFIHDGHCLDQCPPNLQGQVATL 277
+I HC+ CP + G+ TL
Sbjct: 560 HYIDGPHCVKTCPAGVMGENNTL 582
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 378 VINGSLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHG-- 435
V G+ Q G E L++ + G+L+I++ LSFLK++Q + G
Sbjct: 6 VCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYVQRNYDLSFLKTIQEVAGYV 65
Query: 436 -------ER------EIIRGDTSESSVYSN-YSLIVWDNPNLQELWGWSNLPDGQRPKFE 481
ER +IIRG+ Y N Y+L V N + + G LP R E
Sbjct: 66 LIALNTVERIPLENLQIIRGNM----YYENSYALAVLSNYDANKT-GLKELP--MRNLQE 118
Query: 482 IKKGKILFHDNPKLC 496
I G + F +NP LC
Sbjct: 119 ILHGAVRFSNNPALC 133
>pdb|3QWQ|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 648
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 109/486 (22%), Positives = 179/486 (36%), Gaps = 122/486 (25%)
Query: 71 NYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGK 130
+++S + +C VV G ++I + + F L+ I E ++ Y + L ++ +
Sbjct: 47 HFLSLQRMFNNCEVVLGNLEITYVQRNYDLSF-------LKTIQE-VAGYVLIALNTVER 98
Query: 131 L-FPNLAIIRGNTLIWD-YTFSVFSMFN-----LQEIGLHRLTHIMKGTVVILRNP---- 179
+ NL IIRGN + Y +V S ++ L+E+ + L I+ G V NP
Sbjct: 99 IPLENLQIIRGNMYYENSYALAVLSNYDANKTGLKELPMRNLQEILHGAVRFSNNPALCN 158
Query: 180 ----DWKRITKKG--SVVINDIKSKEACLQEGEPGA------RSGPEKCE-------FYW 220
W+ I S + D ++ Q+ +P +G E C+
Sbjct: 159 VESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQ 218
Query: 221 SNNDCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRI 280
+ C+ + CH CA GCTG R DC VC F + C D CPP +
Sbjct: 219 CSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPP----------LM 268
Query: 281 LYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGY 340
LY P +M + + K+ F +C+++CP Y
Sbjct: 269 LYN----------------------------PTTYQMDVNPEGKYS-FGATCVKKCPRNY 299
Query: 341 NTTADETSXXXXXXXXXXXXGVHVKSIEVARSTKGCTVINGSLGIQIQTGDSEVVHQELE 400
T + V+ + + C + +GI + DS ++
Sbjct: 300 VVTDHGSCVRACGADSYEMEEDGVR--KCKKCEGPCRKVCNGIGIG-EFKDSLSINATNI 356
Query: 401 KGLGMITNITGHLKI----------SHSLPI--QSLSFLKSLQSIHG------------- 435
K T+I+G L I +H+ P+ Q L LK+++ I G
Sbjct: 357 KHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTD 416
Query: 436 -----EREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFH 490
EIIRG T + + +SL V + N+ L G R EI G ++
Sbjct: 417 LHAFENLEIIRGRTKQ---HGQFSLAVV-SLNITSL--------GLRSLKEISDGDVIIS 464
Query: 491 DNPKLC 496
N LC
Sbjct: 465 GNKNLC 470
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 125/323 (38%), Gaps = 69/323 (21%)
Query: 21 FNGSCMEECPPGKQLIPRDTLQPQSASNE-------VSGNSKFDQTKEKVCTDIDIRNYV 73
F +C+++CP + + ++ V K + KVC I I +
Sbjct: 287 FGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFK 346
Query: 74 SSFDV-------LKDCTVVEGFVQI-------NLIDNSTAQDFENITFPK-LREITEYLS 118
S + K+CT + G + I + ++ D + + K ++EIT +L
Sbjct: 347 DSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLL 406
Query: 119 FYHVSGLKSIGKLFPNLAIIRGNT-LIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILR 177
++ F NL IIRG T ++ +V S+ N+ +GL L I G V+I
Sbjct: 407 IQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSL-NITSLGLRSLKEISDGDVIISG 465
Query: 178 NPD--------WKRI----TKKGSVVINDIKSKEACLQEGE-------PGARSGPEKCEF 218
N + WK++ +K ++ N + + +C G+ P GPE +
Sbjct: 466 NKNLCYANTINWKKLFGTSGQKTKIISN--RGENSCKATGQVCHALCSPEGCWGPEPRDC 523
Query: 219 YWSNN---------DCQLIK----------EIEECHPLCAG-----GCTGKRAEDCFVCI 254
N C L++ E +CHP C CTG+ ++C C
Sbjct: 524 VSCRNVSRGRECVDKCNLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCA 583
Query: 255 GFIHDGHCLDQCPPNLQGQVATL 277
+I HC+ CP + G+ TL
Sbjct: 584 HYIDGPHCVKTCPAGVMGENNTL 606
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 378 VINGSLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHG-- 435
V G+ Q G E L++ + G+L+I++ LSFLK++Q + G
Sbjct: 30 VCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYVQRNYDLSFLKTIQEVAGYV 89
Query: 436 -------ER------EIIRGDTSESSVYSN-YSLIVWDNPNLQELWGWSNLPDGQRPKFE 481
ER +IIRG+ Y N Y+L V N + + G LP R E
Sbjct: 90 LIALNTVERIPLENLQIIRGNM----YYENSYALAVLSNYDANKT-GLKELP--MRNLQE 142
Query: 482 IKKGKILFHDNPKLC 496
I G + F +NP LC
Sbjct: 143 ILHGAVRFSNNPALC 157
>pdb|1NQL|A Chain A, Structure Of The Extracellular Domain Of Human Epidermal
Growth Factor (egf) Receptor In An Inactive (low Ph)
Complex With Egf
Length = 624
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 109/486 (22%), Positives = 179/486 (36%), Gaps = 122/486 (25%)
Query: 71 NYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGK 130
+++S + +C VV G ++I + + F L+ I E ++ Y + L ++ +
Sbjct: 23 HFLSLQRMFNNCEVVLGNLEITYVQRNYDLSF-------LKTIQE-VAGYVLIALNTVER 74
Query: 131 L-FPNLAIIRGNTLIWD-YTFSVFSMFN-----LQEIGLHRLTHIMKGTVVILRNP---- 179
+ NL IIRGN + Y +V S ++ L+E+ + L I+ G V NP
Sbjct: 75 IPLENLQIIRGNMYYENSYALAVLSNYDANKTGLKELPMRNLQEILHGAVRFSNNPALCN 134
Query: 180 ----DWKRITKKG--SVVINDIKSKEACLQEGEPGA------RSGPEKCE-------FYW 220
W+ I S + D ++ Q+ +P +G E C+
Sbjct: 135 VESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQ 194
Query: 221 SNNDCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRI 280
+ C+ + CH CA GCTG R DC VC F + C D CPP +
Sbjct: 195 CSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPP----------LM 244
Query: 281 LYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGY 340
LY P +M + + K+ F +C+++CP Y
Sbjct: 245 LYN----------------------------PTTYQMDVNPEGKYS-FGATCVKKCPRNY 275
Query: 341 NTTADETSXXXXXXXXXXXXGVHVKSIEVARSTKGCTVINGSLGIQIQTGDSEVVHQELE 400
T + V+ + + C + +GI + DS ++
Sbjct: 276 VVTDHGSCVRACGADSYEMEEDGVR--KCKKCEGPCRKVCNGIGIG-EFKDSLSINATNI 332
Query: 401 KGLGMITNITGHLKI----------SHSLPI--QSLSFLKSLQSIHG------------- 435
K T+I+G L I +H+ P+ Q L LK+++ I G
Sbjct: 333 KHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTD 392
Query: 436 -----EREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFH 490
EIIRG T + + +SL V + N+ L G R EI G ++
Sbjct: 393 LHAFENLEIIRGRTKQ---HGQFSLAVV-SLNITSL--------GLRSLKEISDGDVIIS 440
Query: 491 DNPKLC 496
N LC
Sbjct: 441 GNKNLC 446
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 126/323 (39%), Gaps = 69/323 (21%)
Query: 21 FNGSCMEECPPGKQLIPRDTLQPQSASNE-------VSGNSKFDQTKEKVCTDIDIRNYV 73
F +C+++CP + + ++ V K + KVC I I +
Sbjct: 263 FGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFK 322
Query: 74 SSFDV-------LKDCTVVEGFVQI-------NLIDNSTAQDFENITFPK-LREITEYLS 118
S + K+CT + G + I + ++ D + + K ++EIT +L
Sbjct: 323 DSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLL 382
Query: 119 FYHVSGLKSIGKLFPNLAIIRGNT-LIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILR 177
++ F NL IIRG T ++ +V S+ N+ +GL L I G V+I
Sbjct: 383 IQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSL-NITSLGLRSLKEISDGDVIISG 441
Query: 178 NPD--------WKRI----TKKGSVVINDIKSKEACLQEGE-------PGARSGPEKCEF 218
N + WK++ +K ++ N + + +C G+ P GPE +
Sbjct: 442 NKNLCYANTINWKKLFGTSGQKTKIISN--RGENSCKATGQVCHALCSPEGCWGPEPRDC 499
Query: 219 YWSNN---------DCQLIK----------EIEECHPLCAG-----GCTGKRAEDCFVCI 254
N C+L++ E +CHP C CTG+ ++C C
Sbjct: 500 VSCRNVSRGRECVDKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCA 559
Query: 255 GFIHDGHCLDQCPPNLQGQVATL 277
+I HC+ CP + G+ TL
Sbjct: 560 HYIDGPHCVKTCPAGVMGENNTL 582
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 378 VINGSLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHG-- 435
V G+ Q G E L++ + G+L+I++ LSFLK++Q + G
Sbjct: 6 VCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYVQRNYDLSFLKTIQEVAGYV 65
Query: 436 -------ER------EIIRGDTSESSVYSN-YSLIVWDNPNLQELWGWSNLPDGQRPKFE 481
ER +IIRG+ Y N Y+L V N + + G LP R E
Sbjct: 66 LIALNTVERIPLENLQIIRGNM----YYENSYALAVLSNYDANKT-GLKELP--MRNLQE 118
Query: 482 IKKGKILFHDNPKLC 496
I G + F +NP LC
Sbjct: 119 ILHGAVRFSNNPALC 133
>pdb|1YY9|A Chain A, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 624
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 109/486 (22%), Positives = 179/486 (36%), Gaps = 122/486 (25%)
Query: 71 NYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGK 130
+++S + +C VV G ++I + + F L+ I E ++ Y + L ++ +
Sbjct: 23 HFLSLQRMFNNCEVVLGNLEITYVQRNYDLSF-------LKTIQE-VAGYVLIALNTVER 74
Query: 131 L-FPNLAIIRGNTLIWD-YTFSVFSMFN-----LQEIGLHRLTHIMKGTVVILRNP---- 179
+ NL IIRGN + Y +V S ++ L+E+ + L I+ G V NP
Sbjct: 75 IPLENLQIIRGNMYYENSYALAVLSNYDANKTGLKELPMRNLQEILHGAVRFSNNPALCN 134
Query: 180 ----DWKRITKKG--SVVINDIKSKEACLQEGEPGA------RSGPEKCE-------FYW 220
W+ I S + D ++ Q+ +P +G E C+
Sbjct: 135 VESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQ 194
Query: 221 SNNDCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRI 280
+ C+ + CH CA GCTG R DC VC F + C D CPP +
Sbjct: 195 CSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPP----------LM 244
Query: 281 LYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGY 340
LY P +M + + K+ F +C+++CP Y
Sbjct: 245 LYN----------------------------PTTYQMDVNPEGKYS-FGATCVKKCPRNY 275
Query: 341 NTTADETSXXXXXXXXXXXXGVHVKSIEVARSTKGCTVINGSLGIQIQTGDSEVVHQELE 400
T + V+ + + C + +GI + DS ++
Sbjct: 276 VVTDHGSCVRACGADSYEMEEDGVR--KCKKCEGPCRKVCNGIGIG-EFKDSLSINATNI 332
Query: 401 KGLGMITNITGHLKI----------SHSLPI--QSLSFLKSLQSIHG------------- 435
K T+I+G L I +H+ P+ Q L LK+++ I G
Sbjct: 333 KHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTD 392
Query: 436 -----EREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFH 490
EIIRG T + + +SL V + N+ L G R EI G ++
Sbjct: 393 LHAFENLEIIRGRTKQ---HGQFSLAVV-SLNITSL--------GLRSLKEISDGDVIIS 440
Query: 491 DNPKLC 496
N LC
Sbjct: 441 GNKNLC 446
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 125/321 (38%), Gaps = 65/321 (20%)
Query: 21 FNGSCMEECPPGKQLIPRDTLQPQSASNE-------VSGNSKFDQTKEKVCTDIDIRNYV 73
F +C+++CP + + ++ V K + KVC I I +
Sbjct: 263 FGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFK 322
Query: 74 SSFDV-------LKDCTVVEGFVQI-------NLIDNSTAQDFENITFPK-LREITEYLS 118
S + K+CT + G + I + ++ D + + K ++EIT +L
Sbjct: 323 DSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLL 382
Query: 119 FYHVSGLKSIGKLFPNLAIIRGNT-LIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILR 177
++ F NL IIRG T ++ +V S+ N+ +GL L I G V+I
Sbjct: 383 IQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSL-NITSLGLRSLKEISDGDVIISG 441
Query: 178 NPD--------WKRI----TKKGSVVINDIKSK-----EACLQEGEPGARSGPEKCEFYW 220
N + WK++ +K ++ N ++K + C P GPE +
Sbjct: 442 NKNLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVS 501
Query: 221 SNN---------DCQLIK----------EIEECHPLCAG-----GCTGKRAEDCFVCIGF 256
N C+L++ E +CHP C CTG+ ++C C +
Sbjct: 502 CRNVSRGRECVDKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCAHY 561
Query: 257 IHDGHCLDQCPPNLQGQVATL 277
I HC+ CP + G+ TL
Sbjct: 562 IDGPHCVKTCPAGVMGENNTL 582
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 378 VINGSLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHG-- 435
V G+ Q G E L++ + G+L+I++ LSFLK++Q + G
Sbjct: 6 VCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYVQRNYDLSFLKTIQEVAGYV 65
Query: 436 -------ER------EIIRGDTSESSVYSN-YSLIVWDNPNLQELWGWSNLPDGQRPKFE 481
ER +IIRG+ Y N Y+L V N + + G LP R E
Sbjct: 66 LIALNTVERIPLENLQIIRGNM----YYENSYALAVLSNYDANKT-GLKELP--MRNLQE 118
Query: 482 IKKGKILFHDNPKLC 496
I G + F +NP LC
Sbjct: 119 ILHGAVRFSNNPALC 133
>pdb|3B2V|A Chain A, Crystal Structure Of The Extracellular Region Of The
Epidermal Growth Factor Receptor In Complex With The Fab
Fragment Of Imc-11f8
Length = 624
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 109/486 (22%), Positives = 179/486 (36%), Gaps = 122/486 (25%)
Query: 71 NYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGK 130
+++S + +C VV G ++I + + F L+ I E ++ Y + L ++ +
Sbjct: 23 HFLSLQRMFNNCEVVLGNLEITYVQRNYDLSF-------LKTIQE-VAGYVLIALNTVER 74
Query: 131 L-FPNLAIIRGNTLIWD-YTFSVFSMFN-----LQEIGLHRLTHIMKGTVVILRNP---- 179
+ NL IIRGN + Y +V S ++ L+E+ + L I+ G V NP
Sbjct: 75 IPLENLQIIRGNMYYENSYALAVLSNYDANKTGLKELPMRNLQEILHGAVRFSNNPALCN 134
Query: 180 ----DWKRITKKG--SVVINDIKSKEACLQEGEPGA------RSGPEKCE-------FYW 220
W+ I S + D ++ Q+ +P +G E C+
Sbjct: 135 VESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQ 194
Query: 221 SNNDCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRI 280
+ C+ + CH CA GCTG R DC VC F + C D CPP +
Sbjct: 195 CSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPP----------LM 244
Query: 281 LYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGY 340
LY P +M + + K+ F +C+++CP Y
Sbjct: 245 LYN----------------------------PTTYQMDVNPEGKYS-FGATCVKKCPRNY 275
Query: 341 NTTADETSXXXXXXXXXXXXGVHVKSIEVARSTKGCTVINGSLGIQIQTGDSEVVHQELE 400
T + V+ + + C + +GI + DS ++
Sbjct: 276 VVTDHGSCVRACGADSYEMEEDGVR--KCKKCEGPCRKVCNGIGIG-EFKDSLSINATNI 332
Query: 401 KGLGMITNITGHLKI----------SHSLPI--QSLSFLKSLQSIHG------------- 435
K T+I+G L I +H+ P+ Q L LK+++ I G
Sbjct: 333 KHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTD 392
Query: 436 -----EREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFH 490
EIIRG T + + +SL V + N+ L G R EI G ++
Sbjct: 393 LHAFENLEIIRGRTKQ---HGQFSLAVV-SLNITSL--------GLRSLKEISDGDVIIS 440
Query: 491 DNPKLC 496
N LC
Sbjct: 441 GNKNLC 446
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 125/323 (38%), Gaps = 69/323 (21%)
Query: 21 FNGSCMEECPPGKQLIPRDTLQPQSASNE-------VSGNSKFDQTKEKVCTDIDIRNYV 73
F +C+++CP + + ++ V K + KVC I I +
Sbjct: 263 FGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFK 322
Query: 74 SSFDV-------LKDCTVVEGFVQI-------NLIDNSTAQDFENITFPK-LREITEYLS 118
S + K+CT + G + I + ++ D + + K ++EIT +L
Sbjct: 323 DSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLL 382
Query: 119 FYHVSGLKSIGKLFPNLAIIRGNT-LIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILR 177
++ F NL IIRG T ++ +V S+ N+ +GL L I G V+I
Sbjct: 383 IQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSL-NITSLGLRSLKEISDGDVIISG 441
Query: 178 NPD--------WKRI----TKKGSVVINDIKSKEACLQEGE-------PGARSGPEKCEF 218
N + WK++ +K ++ N + + +C G+ P GPE +
Sbjct: 442 NKNLCYANTINWKKLFGTSGQKTKIISN--RGENSCKATGQVCHALCSPEGCWGPEPRDC 499
Query: 219 YWSNN---------DCQLIK----------EIEECHPLCAG-----GCTGKRAEDCFVCI 254
N C L++ E +CHP C CTG+ ++C C
Sbjct: 500 VSCRNVSRGRECVDKCNLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCA 559
Query: 255 GFIHDGHCLDQCPPNLQGQVATL 277
+I HC+ CP + G+ TL
Sbjct: 560 HYIDGPHCVKTCPAGVMGENNTL 582
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 378 VINGSLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHG-- 435
V G+ Q G E L++ + G+L+I++ LSFLK++Q + G
Sbjct: 6 VCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYVQRNYDLSFLKTIQEVAGYV 65
Query: 436 -------ER------EIIRGDTSESSVYSN-YSLIVWDNPNLQELWGWSNLPDGQRPKFE 481
ER +IIRG+ Y N Y+L V N + + G LP R E
Sbjct: 66 LIALNTVERIPLENLQIIRGNM----YYENSYALAVLSNYDANKT-GLKELP--MRNLQE 118
Query: 482 IKKGKILFHDNPKLC 496
I G + F +NP LC
Sbjct: 119 ILHGAVRFSNNPALC 133
>pdb|3H3B|A Chain A, Crystal Structure Of The Single-Chain Fv (Scfv) Fragment
Of An Anti- Erbb2 Antibody Cha21 In Complex With
Residues 1-192 Of Erbb2 Extracellular Domain
pdb|3H3B|B Chain B, Crystal Structure Of The Single-Chain Fv (Scfv) Fragment
Of An Anti- Erbb2 Antibody Cha21 In Complex With
Residues 1-192 Of Erbb2 Extracellular Domain
Length = 194
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 52/215 (24%)
Query: 62 KVCTDIDIRNYVSS-----FDVLKD----CTVVEGFVQINLIDNSTAQDFENITFPKLRE 112
+VCT D++ + + D+L+ C VV+G +++ + + + F ++E
Sbjct: 4 QVCTGTDMKLRLPASPETHLDMLRHLYQGCQVVQGNLELTYLPTNASLSF----LQDIQE 59
Query: 113 ITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIWD-YTFSVF---------------SMFN 156
+ Y+ H + ++ + L I+RG L D Y +V S
Sbjct: 60 VQGYVLIAH-NQVRQVP--LQRLRIVRGTQLFEDNYALAVLDNGDPLNNTTPVTGASPGG 116
Query: 157 LQEIGLHRLTHIMKGTVVILRNPDWKRITKKGSVVINDIKSKEACLQEGEPGARSGPEKC 216
L+E+ L LT I+KG V+I RNP ++ + +++ DI K
Sbjct: 117 LRELQLRSLTEILKGGVLIQRNP---QLCYQDTILWKDIFHKNN---------------- 157
Query: 217 EFYWSNNDCQLIKEIEECHPLCAGG-CTGKRAEDC 250
+ + D + C P+C G C G+ +EDC
Sbjct: 158 QLALTLIDTNRSRACHPCSPMCKGSRCWGESSEDC 192
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 29/112 (25%)
Query: 409 ITGHLKISHSLPIQSLSFLKSLQSIHG---------------EREIIRGDTSESSVYSNY 453
+ G+L++++ SLSFL+ +Q + G I+RG NY
Sbjct: 36 VQGNLELTYLPTNASLSFLQDIQEVQGYVLIAHNQVRQVPLQRLRIVRG---TQLFEDNY 92
Query: 454 SLIVWDNP----NLQELWGWSNLPDG-----QRPKFEIKKGKILFHDNPKLC 496
+L V DN N + G S P G R EI KG +L NP+LC
Sbjct: 93 ALAVLDNGDPLNNTTPVTGAS--PGGLRELQLRSLTEILKGGVLIQRNPQLC 142
>pdb|3B2U|A Chain A, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|B Chain B, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|E Chain E, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|I Chain I, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|M Chain M, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|P Chain P, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|S Chain S, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|V Chain V, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3C09|A Chain A, Crystal Structure The Fab Fragment Of Matuzumab (Fab72000)
In Complex With Domain Iii Of The Extracellular Region
Of Egfr
pdb|3C09|D Chain D, Crystal Structure The Fab Fragment Of Matuzumab (Fab72000)
In Complex With Domain Iii Of The Extracellular Region
Of Egfr
Length = 214
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 88/223 (39%), Gaps = 34/223 (15%)
Query: 60 KEKVCTDIDIRNYVSSFDV-------LKDCTVVEGFVQI-------NLIDNSTAQDFENI 105
++KVC I I + S + K+CT + G + I + ++ D + +
Sbjct: 3 EKKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQEL 62
Query: 106 TFPK-LREITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLI-WDYTFSVFSMFNLQEIGLH 163
K ++EIT +L ++ F NL IIRG T ++ +V S+ N+ +GL
Sbjct: 63 DILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSL-NITSLGLR 121
Query: 164 RLTHIMKGTVVILRNPDWKRITKKGSVVINDIKSKEACLQEGEPGARSGPEKCEFYWSNN 223
L I G V+I N K N I K+ G+ K N
Sbjct: 122 SLKEISDGDVIISGN--------KNLCYANTINWKKLFGTSGQK------TKIISNRGEN 167
Query: 224 DCQLIKEIEECHPLCA-GGCTGKRAEDCFVCIGFIHDGHCLDQ 265
C+ ++ CH LC+ GC G DC C C+D+
Sbjct: 168 SCKATGQV--CHALCSPEGCWGPEPRDCVSCRNVSRGRECVDK 208
>pdb|1P9M|A Chain A, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 299
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 849 PADSLNFEMINA----SALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR 904
P N +IN+ S L++ W PS + II+ YNI+Y+ + + R
Sbjct: 200 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 259
Query: 905 DSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSW 936
S P Y+FR+R + G+G W+ W
Sbjct: 260 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDW 291
>pdb|1I1R|A Chain A, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 303
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 849 PADSLNFEMINA----SALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR 904
P N +IN+ S L++ W PS + II+ YNI+Y+ + + R
Sbjct: 200 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 259
Query: 905 DSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSW 936
S P Y+FR+R + G+G W+ W
Sbjct: 260 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDW 291
>pdb|3P0Y|A Chain A, Anti-EgfrHER3 FAB DL11 IN COMPLEX WITH DOMAIN III OF EGFR
Extracellular Region
Length = 214
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 86/221 (38%), Gaps = 34/221 (15%)
Query: 62 KVCTDIDIRNYVSSFDV-------LKDCTVVEGFVQI-------NLIDNSTAQDFENITF 107
KVC I I + S + K+CT + G + I + ++ D + +
Sbjct: 2 KVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDI 61
Query: 108 PK-LREITEYLSFYHVSGLKSIGKLFPNLAIIRGNT-LIWDYTFSVFSMFNLQEIGLHRL 165
K ++EIT +L ++ F NL IIRG T ++ +V S+ N+ +GL L
Sbjct: 62 LKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSL-NITSLGLRSL 120
Query: 166 THIMKGTVVILRNPDWKRITKKGSVVINDIKSKEACLQEGEPGARSGPEKCEFYWSNNDC 225
I G V+I N K N I K+ G+ K N C
Sbjct: 121 KEISDGDVIISGN--------KNLCYANTINWKKLFGTSGQK------TKIISNRGENSC 166
Query: 226 QLIKEIEECHPLCA-GGCTGKRAEDCFVCIGFIHDGHCLDQ 265
+ ++ CH LC+ GC G DC C C+D+
Sbjct: 167 KATGQV--CHALCSPEGCWGPEPRDCVSCRNVSRGRECVDK 205
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 849 PADSLNFEMINA----SALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR 904
P N +IN+ S L++ W PS + II+ YNI+Y+ + + R
Sbjct: 199 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 258
Query: 905 DSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSW 936
S P Y+FR+R + G+G W+ W
Sbjct: 259 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDW 290
>pdb|1PVH|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
pdb|1PVH|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
Length = 201
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 849 PADSLNFEMINA----SALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR 904
P N +IN+ S L++ W PS + II+ YNI+Y+ + + R
Sbjct: 100 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 159
Query: 905 DSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSW 936
S P Y+FR+R + G+G W+ W
Sbjct: 160 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDW 191
>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
Length = 215
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 842 DHLADTIPADSLNFEMINA----SALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCR 897
D + P N +IN+ S L++ W PS + II+ YNI+Y+ + +
Sbjct: 97 DPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPP 156
Query: 898 TRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSW 936
R S P Y+FR+R + G+G W+ W
Sbjct: 157 EDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDW 195
>pdb|1BJ8|A Chain A, Third N-Terminal Domain Of Gp130, Nmr, Minimized Average
Structure
Length = 109
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 849 PADSLNFEMINA----SALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR 904
P N +IN+ S L++ W PS + II+ YNI+Y+ + + R
Sbjct: 6 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 65
Query: 905 DSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSW 936
S P Y+FR+R + G+G W+ W
Sbjct: 66 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDW 97
>pdb|1WFO|A Chain A, The Eighth Fn3 Domain Of Human Sidekick-2
Length = 130
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 846 DTIPADSLN--FEMINASALRIRWHPPSRPNGIIVAYNIEYK 885
D +P + F + +++R+ W PP+ PNGII+AY I ++
Sbjct: 25 DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHR 66
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 852 SLNFEMINASALRIRWHPPS--RPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD--SG 907
+L+ E+ N+ ++ I W PP+ NG I Y I Y++ S + D+ SG
Sbjct: 24 NLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKAS---------RKSDVTETLVSG 74
Query: 908 LYLYDYPAG-----SYLFRLRVVSLGGEGPWTSW 936
L G Y FR+ +++ G GP T W
Sbjct: 75 TQLSQLIEGLDRGTEYNFRVAALTINGTGPATDW 108
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 9/120 (7%)
Query: 818 KFLPYDPEEGRCSEETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGII 877
K + +PE + S+E +V + + L +P +S+ ++W P++ G+I
Sbjct: 438 KLILMNPEGRKESQELIVQTD---EDLPGAVPTESIQGSTFEEKIF-LQWREPTQTYGVI 493
Query: 878 VAYNIEYKRESGGNSE-----NMCRTRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGP 932
Y I YK S + E R K + L+ YP +Y F +R + G GP
Sbjct: 494 TLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGP 553
>pdb|2DJS|A Chain A, Solution Structures Of The Fn3 Domain Of Human Ephrin
Type- B Receptor 1
Length = 108
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 862 ALRIRWHPPSRPNGIIVAYNIE-YKRESGGNSENMCRTRKDIDRDSGLYLYDYPAGSYLF 920
++ + W P +PNGII+ Y I Y++E + +M R++ + R GL P Y+
Sbjct: 23 SITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGL----RPGMVYVV 78
Query: 921 RLRVVSLGGEGPWT 934
++R ++ G G ++
Sbjct: 79 QVRARTVAGYGKFS 92
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 646 VRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDK 681
V S+TL W +P+ P+GI+ Y I+ Y +++++
Sbjct: 17 VSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNE 52
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 37.7 bits (86), Expect = 0.035, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 640 PYQFEVVR---VNSSSVTLRWGEPKHPHGILEKYVIKAYYQD 678
P Q V+R +SV+L W EP+ P+GI+ +Y IK Y +D
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKD 52
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 856 EMINASALRIRWHPPSRPNGIIVAYNIEY----KRESGGNSENMCRTRKDIDRDSGLYLY 911
E +++ + W P +PNGII+ Y I+Y K ++ TR + SGL
Sbjct: 20 ERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATV---SGL--- 73
Query: 912 DYPAGSYLFRLRVVSLGGEGPWT 934
P Y+F++R + G G ++
Sbjct: 74 -KPGTRYVFQVRARTSAGCGRFS 95
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 65/134 (48%), Gaps = 29/134 (21%)
Query: 822 YDPEEGRCSEETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPP--SRPNGIIVA 879
Y P G +++ V++ ++V + P +++ E++N+ ++++ W PP NG I
Sbjct: 10 YGP--GVSTDDITVVTLSDVP----SAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITG 63
Query: 880 YNIEYKRESGGNSENMCRTRKD----IDRDSGLYLYD--YPAGSYLFRLRVVSLGGEGPW 933
Y I +++ TR+ ++ ++ YL+ Y F++ +++ G GP
Sbjct: 64 YKIRHRKT----------TRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPP 113
Query: 934 TSWKPCVIESAETP 947
++W +AETP
Sbjct: 114 SNWY-----TAETP 122
>pdb|2E7H|A Chain A, Solution Structure Of The Second Fn3 Domain From Human
Ephrin Type-B Receptor 4
Length = 109
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 861 SALRIRWHPPSRPNGIIVAYNIEY--KRESGGNSENMCRTRKDIDRDSGLYLYDYPAGSY 918
S+L + W P P+G ++ Y ++Y K G +S +T ++ GL SY
Sbjct: 22 SSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGL----KRGASY 77
Query: 919 LFRLRVVSLGGEGPW 933
L ++R S G GP+
Sbjct: 78 LVQVRARSEAGYGPF 92
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 33.5 bits (75), Expect = 0.66, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNS 892
P L+F I ++L++ W P NGI+ Y I ++ + N+
Sbjct: 20 PVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNT 63
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 592 INSKNKTVEVMNLEPATEYAFFVKIYNSQ-RIVRSNISLQTTLPTKPSIPYQFEVVRVNS 650
++SK +VE+ NL P +Y V Y +Q S++ T PS P + V+S
Sbjct: 53 LDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSS 112
Query: 651 SSVTLRWGEPKHPHGILEKYVI 672
+ L W EP +G + Y +
Sbjct: 113 TVTQLSWAEPAETNGEITAYEV 134
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 588 KFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTT----LPTKPSIPYQF 643
K+K+ N+ + V L+P T Y F V + +R +++ T +PT P P
Sbjct: 55 KYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSP--PKDV 112
Query: 644 EVVRVNS--SSVTLRWGEPKHPHGILEKYVIKAYY 676
VV ++ + W P +G + Y+I YY
Sbjct: 113 TVVSKEGKPKTIIVNWQPPSEANGKITGYII--YY 145
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 592 INSKNKTVEVMNLEPATEYAFFVKIYNSQ-RIVRSNISLQTTLPTKPSIPYQFEVVRVNS 650
++SK +VE+ NL P +Y V Y +Q S++ T PS P + V+S
Sbjct: 53 LDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSS 112
Query: 651 SSVTLRWGEPKHPHGILEKYVI 672
+ L W EP +G + Y +
Sbjct: 113 TVTQLSWAEPAETNGEITAYEV 134
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 592 INSKNKTVEVMNLEPATEYAFFVKIYNSQ-RIVRSNISLQTTLPTKPSIPYQFEVVRVNS 650
++SK +VE+ NL P +Y V Y +Q S++ T PS P + V+S
Sbjct: 52 LDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSS 111
Query: 651 SSVTLRWGEPKHPHGILEKYVI 672
+ L W EP +G + Y +
Sbjct: 112 TVTQLSWAEPAETNGEITAYEV 133
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 592 INSKNKTVEVMNLEPATEYAFFVKIYNSQ-RIVRSNISLQTTLPTKPSIPYQFEVVRVNS 650
++SK +VE+ NL P +Y V Y +Q S++ T PS P + V+S
Sbjct: 49 LDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSS 108
Query: 651 SSVTLRWGEPKHPHGILEKYVI 672
+ L W EP +G + Y +
Sbjct: 109 TVTQLSWAEPAETNGEITAYEV 130
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 630 QTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYY 676
QT+ S P + ++S+++ ++W EP+ P+G ++ Y + YY
Sbjct: 12 QTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGY--RVYY 56
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 839 TEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRT 898
T+ A + + M++++ + ++W P PNG I Y + Y + + N +
Sbjct: 11 TQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMK- 69
Query: 899 RKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
D P +Y ++ + G+GP +S + ++ P S
Sbjct: 70 HNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGPSS 120
>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1
Protein
Length = 122
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 849 PADSLNFEMINASALRIRWHPPSRP--NGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS 906
P + + + + ++++ W P + NG+I Y I Y+ S G++ DS
Sbjct: 18 PPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDS 77
Query: 907 GLYLYD--YPAGSYLFRLRVVSLGGEGPWTS 935
+Y D Y ++ + G GP +S
Sbjct: 78 EVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS 108
>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 119
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 857 MINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD---Y 913
++++ +R+ W PP+ G I + + + RE G N E T + L L
Sbjct: 28 LVSSRFVRLSWRPPAEAKGNIQTFTVFFSRE-GDNRERALNTTQ----PGSLQLTVGNLK 82
Query: 914 PAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
P Y F RVV+ GP S +P I+ A P S
Sbjct: 83 PEAMYTF--RVVAYNEWGPGESSQP--IKVATQPES 114
>pdb|4ES6|A Chain A, Crystal Structure Of Hemd (pa5259) From Pseudomonas
Aeruginosa (pao1) At 2.22 A Resolution
Length = 254
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 55/152 (36%), Gaps = 21/152 (13%)
Query: 789 PETSYTMVGLGHFRSIVFTISACRK---EQKDKFLPYDPEEGRCSEETLVMSRTEVDHLA 845
PE M+ L + ++V + E+ D++ P P++ CS + E L
Sbjct: 47 PEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYWPQPPQQTWCSVGAATAAILEAYGLD 106
Query: 846 DTIPA---DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDI 902
T P DS + A +R H P + R GG R R
Sbjct: 107 VTYPEQGDDSEALLALPAFQDSLRVHDP----------KVLIMRGEGGREFLAERLRGQG 156
Query: 903 DRDSGLYLY-----DYPAGSYLFRLRVVSLGG 929
+ L LY DYPAG L R+R L G
Sbjct: 157 VQVDYLPLYRRRAPDYPAGELLARVRAERLNG 188
>pdb|1X4X|A Chain A, Solution Structure Of The 6th Fibronectin Type Iii Domain
From Human Fibronectin Type Iii Domain Containing
Protein 3
Length = 106
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 859 NASALRIRWHPPSRPNGIIVAYNIEYKRESGG--NSENMCRTRKDIDRD-SGLYLYDYPA 915
+A+ ++ W P NG V EY+ E GG S +C + + GL PA
Sbjct: 20 SATCAQVNWEVP-LSNGTDVT---EYRLEWGGVEGSMQICYCGPGLSYEIKGLS----PA 71
Query: 916 GSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
+Y R++ +S+ G GP++ CV + P S
Sbjct: 72 TTYYCRVQALSVVGAGPFSEVVACVTPPSSGPSS 105
>pdb|2DN7|A Chain A, Solution Structures Of The 6th Fn3 Domain Of Human
Receptor- Type Tyrosine-Protein Phosphatase F
Length = 107
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 857 MINASALR---IRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD- 912
MI+ +A+ ++WHPP G ++ Y ++Y R + D +D +
Sbjct: 14 MISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTI-----DFGKDDQHFTVTG 68
Query: 913 -YPAGSYLFRLRVVSLGGEG 931
+ +Y+FRL + G G
Sbjct: 69 LHKGTTYIFRLAAKNRAGLG 88
>pdb|3E0G|A Chain A, Structure Of The Leukemia Inhibitory Factor Receptor
(Lif-R) Domains D1-D5
Length = 483
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 827 GRCSEETLVMSRTEVDHLADTIPADSLNFEM--INASALRIRWHPPSRPNGIIVAYNIEY 884
GR S+ T++++ TE P +F++ IN++A+++ WH P I IE
Sbjct: 366 GR-SQSTILVNITE-----KVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEI 419
Query: 885 KRESGGNSENMCRTRKDIDRDSGLYLYDY--PAGSYLFRLRVVSLGGEGPWTSW 936
K+ S E T + ++ S L D P Y FR+R S W+ W
Sbjct: 420 KK-SNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIR-CSTETFWKWSKW 471
>pdb|3IGH|X Chain X, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 30/169 (17%)
Query: 371 RSTKGCTVINGSLGIQIQTGDSEVVHQELEKGLGMITNITG----------HL---KISH 417
+ G + +G + I GDSEV + +E G I ++ G HL ++
Sbjct: 19 KKVSGLVISHGKV---IYAGDSEVAKKIVELSGGEIVDLKGKYVMPAFFDSHLHLDELGM 75
Query: 418 SLPIQSLSFLKSLQSIHGEREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQR 477
SL + L KS++ + I R + + + WD L E L +
Sbjct: 76 SLEMVDLRGAKSIEEL-----IQRLKRGKGRIIFGFG---WDQDELGEWPTRKELNAIDK 127
Query: 478 PKFEIKKGKILFHDNPKLCLDKIYELINVT-NITYDSDFDVLKESNGDE 525
P F +K FH + DK+ EL+N+T + +D D ++KE + +E
Sbjct: 128 PVFIYRK---CFH--VAVANDKMLELLNLTPSKDFDEDTGIIKEKSLEE 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,732,757
Number of Sequences: 62578
Number of extensions: 1277351
Number of successful extensions: 2984
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2699
Number of HSP's gapped (non-prelim): 159
length of query: 976
length of database: 14,973,337
effective HSP length: 108
effective length of query: 868
effective length of database: 8,214,913
effective search space: 7130544484
effective search space used: 7130544484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)