Query psy2190
Match_columns 976
No_of_seqs 592 out of 2603
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 18:32:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4258|consensus 100.0 4E-141 9E-146 1188.5 45.9 837 60-974 30-957 (1025)
2 KOG1025|consensus 100.0 7.9E-71 1.7E-75 620.2 13.5 412 61-535 26-489 (1177)
3 KOG1025|consensus 100.0 4.2E-58 9E-63 517.6 8.9 286 16-362 288-607 (1177)
4 KOG4258|consensus 100.0 1.5E-33 3.2E-38 319.6 19.4 155 19-186 300-460 (1025)
5 KOG4221|consensus 100.0 1.1E-26 2.3E-31 273.4 37.4 414 491-944 486-1021(1381)
6 KOG3513|consensus 100.0 1.9E-26 4.2E-31 274.1 32.9 410 380-945 478-917 (1051)
7 KOG4221|consensus 99.9 1.3E-25 2.8E-30 264.4 27.5 282 525-945 426-714 (1381)
8 PF00757 Furin-like: Furin-lik 99.9 2.2E-23 4.7E-28 201.4 5.1 131 199-360 2-149 (149)
9 KOG3513|consensus 99.8 6.7E-19 1.5E-23 210.3 31.0 369 429-940 620-1013(1051)
10 KOG0196|consensus 99.8 2.1E-19 4.5E-24 204.9 22.5 141 789-944 396-537 (996)
11 PF14843 GF_recep_IV: Growth f 99.8 2E-19 4.3E-24 171.7 7.0 114 234-362 2-126 (132)
12 PF01030 Recep_L_domain: Recep 99.7 2.8E-17 6E-22 154.1 5.7 110 375-506 1-111 (112)
13 PF01030 Recep_L_domain: Recep 99.7 1.1E-16 2.3E-21 150.1 6.3 96 81-179 1-97 (112)
14 KOG0196|consensus 99.6 6.2E-14 1.4E-18 160.8 22.3 135 529-676 334-480 (996)
15 KOG4222|consensus 99.5 3.5E-14 7.7E-19 168.0 14.3 283 536-944 537-846 (1281)
16 PF14843 GF_recep_IV: Growth f 99.1 6.5E-11 1.4E-15 113.3 5.8 82 223-316 29-130 (132)
17 PF00041 fn3: Fibronectin type 98.9 4E-09 8.7E-14 93.0 7.4 81 849-934 3-85 (85)
18 PF00041 fn3: Fibronectin type 98.6 1.6E-07 3.5E-12 82.7 8.9 39 638-678 1-39 (85)
19 KOG4222|consensus 98.6 3.2E-07 6.8E-12 110.2 12.4 123 536-672 652-786 (1281)
20 KOG4802|consensus 98.4 2.9E-06 6.2E-11 91.4 14.4 89 585-676 197-292 (516)
21 cd00063 FN3 Fibronectin type 3 98.3 6.5E-06 1.4E-10 72.5 10.8 87 849-939 4-91 (93)
22 PF10179 DUF2369: Uncharacteri 98.2 0.00022 4.7E-09 76.8 20.7 124 790-929 127-284 (300)
23 KOG4802|consensus 97.9 7.3E-05 1.6E-09 80.9 10.7 132 789-933 207-342 (516)
24 PF00757 Furin-like: Furin-lik 97.8 1.1E-05 2.4E-10 78.6 3.0 45 11-65 105-149 (149)
25 cd00064 FU Furin-like repeats. 97.7 1.8E-05 3.8E-10 61.9 2.5 36 234-270 2-39 (49)
26 smart00060 FN3 Fibronectin typ 97.7 0.0002 4.3E-09 61.0 9.5 75 849-930 4-82 (83)
27 cd00063 FN3 Fibronectin type 3 97.6 0.00048 1E-08 60.3 10.4 82 532-630 6-91 (93)
28 cd00064 FU Furin-like repeats. 97.4 0.00011 2.4E-09 57.4 3.1 45 297-349 3-48 (49)
29 KOG3632|consensus 97.1 0.0039 8.5E-08 74.5 12.1 131 792-933 719-858 (1335)
30 PF10179 DUF2369: Uncharacteri 97.0 0.015 3.3E-07 62.9 14.3 74 596-672 127-208 (300)
31 smart00261 FU Furin-like repea 96.8 0.00064 1.4E-08 52.2 2.1 36 234-270 7-44 (46)
32 smart00060 FN3 Fibronectin typ 96.8 0.0087 1.9E-07 50.6 9.2 72 533-619 7-79 (83)
33 smart00261 FU Furin-like repea 96.8 0.0011 2.3E-08 51.0 2.8 41 293-341 3-45 (46)
34 PTZ00214 high cysteine membran 96.7 0.0039 8.4E-08 77.0 8.2 135 232-385 432-603 (800)
35 KOG3632|consensus 96.6 0.0022 4.8E-08 76.5 5.2 123 525-672 670-811 (1335)
36 PTZ00214 high cysteine membran 96.4 0.0041 8.9E-08 76.7 6.0 96 234-357 579-707 (800)
37 KOG4152|consensus 95.5 0.02 4.4E-07 64.1 5.8 72 600-672 650-724 (830)
38 KOG4260|consensus 95.4 0.028 6E-07 58.2 5.8 33 232-264 200-235 (350)
39 KOG4367|consensus 95.3 0.015 3.3E-07 63.5 3.9 78 861-943 453-531 (699)
40 PF09294 Interfer-bind: Interf 95.3 0.057 1.2E-06 49.6 7.2 84 851-941 7-105 (106)
41 KOG4152|consensus 94.9 0.094 2E-06 59.0 8.6 126 794-938 650-793 (830)
42 PF01108 Tissue_fac: Tissue fa 94.9 0.1 2.2E-06 48.2 7.6 75 849-930 25-104 (107)
43 KOG4806|consensus 94.4 1.4 3.1E-05 47.7 15.5 120 795-930 288-435 (454)
44 PF09294 Interfer-bind: Interf 94.3 0.33 7.1E-06 44.5 9.7 84 531-631 6-104 (106)
45 KOG4367|consensus 92.6 0.11 2.5E-06 56.9 3.9 82 536-635 449-532 (699)
46 PF01108 Tissue_fac: Tissue fa 92.6 0.76 1.6E-05 42.4 9.0 75 528-619 23-101 (107)
47 COG3401 Fibronectin type 3 dom 91.2 13 0.00029 40.6 17.5 71 598-672 125-196 (343)
48 PF07495 Y_Y_Y: Y_Y_Y domain; 91.1 0.81 1.7E-05 37.8 6.7 28 907-934 30-57 (66)
49 COG4733 Phage-related protein, 89.7 2.6 5.6E-05 51.1 11.4 126 789-933 658-785 (952)
50 PF03302 VSP: Giardia variant- 88.0 0.81 1.7E-05 52.7 5.9 41 328-380 88-129 (397)
51 COG3401 Fibronectin type 3 dom 84.5 17 0.00038 39.8 13.1 73 596-672 30-103 (343)
52 PF03302 VSP: Giardia variant- 83.1 1.2 2.7E-05 51.2 4.3 67 248-339 74-152 (397)
53 KOG0994|consensus 78.5 5 0.00011 50.0 7.2 96 234-353 795-910 (1758)
54 KOG4260|consensus 74.6 2.6 5.7E-05 44.1 3.0 34 328-362 177-214 (350)
55 PLN02533 probable purple acid 74.2 18 0.00038 42.3 10.2 34 597-635 103-136 (427)
56 PLN02533 probable purple acid 74.1 26 0.00055 41.0 11.5 86 847-944 42-136 (427)
57 KOG4806|consensus 72.5 28 0.00061 38.2 10.1 87 601-692 288-382 (454)
58 PHA02637 TNF-alpha-receptor-li 69.6 7.5 0.00016 36.4 4.5 15 256-270 37-51 (127)
59 KOG1948|consensus 61.0 1.2E+02 0.0027 37.5 13.3 23 790-812 945-967 (1165)
60 PF15102 TMEM154: TMEM154 prot 57.7 12 0.00026 36.1 3.6 28 946-973 54-81 (146)
61 PF07353 Uroplakin_II: Uroplak 54.2 33 0.00071 33.4 5.8 24 904-927 100-124 (184)
62 cd00185 TNFR Tumor necrosis fa 54.1 24 0.00052 31.9 4.9 23 328-353 73-95 (98)
63 PF11403 Yeast_MT: Yeast metal 54.0 13 0.00029 25.7 2.3 15 216-230 11-25 (40)
64 KOG1225|consensus 53.9 17 0.00036 43.0 4.8 110 787-922 414-524 (525)
65 PF01299 Lamp: Lysosome-associ 52.1 8.5 0.00018 42.8 2.0 48 916-966 242-289 (306)
66 COG1470 Predicted membrane pro 51.9 4.5E+02 0.0097 30.7 16.2 31 913-945 456-486 (513)
67 KOG4228|consensus 51.6 24 0.00053 44.7 5.9 103 536-661 35-139 (1087)
68 PF01826 TIL: Trypsin Inhibito 51.0 12 0.00026 29.7 2.2 14 287-300 42-55 (55)
69 COG4733 Phage-related protein, 49.4 1.9E+02 0.0041 36.0 12.4 64 596-661 659-726 (952)
70 TIGR03478 DMSO_red_II_bet DMSO 46.8 15 0.00033 40.4 2.8 31 331-361 169-212 (321)
71 KOG4228|consensus 45.5 30 0.00066 43.9 5.4 53 614-672 144-197 (1087)
72 COG0437 HybA Fe-S-cluster-cont 42.8 17 0.00037 37.4 2.3 22 319-340 129-152 (203)
73 PF07495 Y_Y_Y: Y_Y_Y domain; 39.5 1.5E+02 0.0033 24.0 7.2 32 585-619 19-50 (66)
74 PF11857 DUF3377: Domain of un 39.2 52 0.0011 27.8 4.1 35 937-971 18-52 (74)
75 PF12877 DUF3827: Domain of un 39.1 13 0.00028 44.2 0.9 28 948-975 267-294 (684)
76 PF09240 IL6Ra-bind: Interleuk 38.9 2.9E+02 0.0062 24.7 9.9 78 850-930 3-86 (99)
77 PF09423 PhoD: PhoD-like phosp 38.8 42 0.0009 39.6 5.1 49 597-649 64-112 (453)
78 TIGR01660 narH nitrate reducta 38.0 25 0.00054 40.5 2.9 18 249-270 182-199 (492)
79 KOG0613|consensus 37.9 4.9E+02 0.011 34.2 14.1 135 793-942 293-430 (1205)
80 PF12798 Fer4_3: 4Fe-4S bindin 37.9 11 0.00023 21.6 -0.0 10 260-269 5-14 (15)
81 PF13754 Big_3_4: Bacterial Ig 37.9 70 0.0015 25.3 4.6 35 907-941 15-49 (54)
82 PHA02579 7 baseplate wedge sub 37.6 99 0.0021 37.7 7.6 87 531-629 9-96 (1030)
83 PF09067 EpoR_lig-bind: Erythr 36.9 1.8E+02 0.004 26.5 7.8 81 530-629 11-102 (104)
84 PF09067 EpoR_lig-bind: Erythr 36.3 1.2E+02 0.0027 27.7 6.6 76 849-929 11-94 (104)
85 PF08329 ChitinaseA_N: Chitina 35.9 2.6E+02 0.0057 26.8 8.9 77 861-948 38-114 (133)
86 TIGR02745 ccoG_rdxA_fixG cytoc 34.5 14 0.00031 42.9 0.3 31 331-361 238-269 (434)
87 cd00146 PKD polycystic kidney 34.3 1.4E+02 0.0031 25.2 6.6 58 861-931 15-72 (81)
88 TIGR03769 P_ac_wall_RPT actino 33.5 80 0.0017 23.6 4.0 24 914-937 11-35 (41)
89 KOG1948|consensus 33.4 1.1E+03 0.024 29.9 15.6 22 596-617 945-966 (1165)
90 TIGR00868 hCaCC calcium-activa 33.3 1.3E+02 0.0027 38.3 8.1 38 636-676 755-794 (863)
91 PF00020 TNFR_c6: TNFR/NGFR cy 33.2 14 0.00031 27.0 0.0 22 336-357 1-23 (39)
92 smart00208 TNFR Tumor necrosis 32.8 35 0.00077 24.7 2.1 22 336-357 1-23 (39)
93 PF07699 GCC2_GCC3: GCC2 and G 32.1 29 0.00063 26.7 1.6 22 331-353 10-32 (48)
94 PF07353 Uroplakin_II: Uroplak 32.1 1.8E+02 0.004 28.4 7.1 40 596-635 101-140 (184)
95 PRK14993 tetrathionate reducta 32.1 36 0.00079 36.4 2.9 19 248-270 98-116 (244)
96 PF13908 Shisa: Wnt and FGF in 30.9 32 0.00069 34.9 2.1 20 949-968 77-96 (179)
97 PRK15449 ferredoxin-like prote 30.2 16 0.00034 32.8 -0.3 41 22-67 36-76 (95)
98 KOG1378|consensus 29.9 2.8E+02 0.0062 32.2 9.5 101 849-955 45-154 (452)
99 PHA02637 TNF-alpha-receptor-li 29.6 48 0.001 31.2 2.8 33 18-57 37-69 (127)
100 PF12662 cEGF: Complement Clr- 27.7 38 0.00083 22.1 1.3 16 335-350 5-20 (24)
101 PF14292 SusE: SusE outer memb 26.8 4.2E+02 0.0092 24.7 8.9 28 861-888 45-73 (122)
102 PHA02714 CD-30-like protein; P 25.6 42 0.00091 29.7 1.5 23 334-356 22-44 (110)
103 cd00185 TNFR Tumor necrosis fa 25.3 1.6E+02 0.0036 26.4 5.5 27 329-356 32-60 (98)
104 KOG4611|consensus 23.9 65 0.0014 35.2 2.9 23 334-357 101-124 (747)
105 TIGR03149 cyt_nit_nrfC cytochr 23.6 90 0.002 32.9 4.0 19 248-270 92-110 (225)
106 smart00089 PKD Repeats in poly 22.9 4.5E+02 0.0098 21.9 8.1 22 908-929 47-68 (79)
107 KOG0994|consensus 22.4 1.3E+02 0.0029 38.3 5.4 25 249-274 874-898 (1758)
108 PF13620 CarboxypepD_reg: Carb 21.7 80 0.0017 26.8 2.7 21 904-924 36-56 (82)
109 PF00801 PKD: PKD domain; Int 21.6 2.7E+02 0.0059 22.8 5.8 24 907-930 43-66 (69)
110 PF11344 DUF3146: Protein of u 21.1 60 0.0013 27.5 1.6 15 911-925 65-80 (80)
111 PF06024 DUF912: Nucleopolyhed 20.9 66 0.0014 29.3 2.0 7 952-958 63-69 (101)
112 KOG0613|consensus 20.2 1.1E+03 0.024 31.1 13.0 74 861-936 247-322 (1205)
No 1
>KOG4258|consensus
Probab=100.00 E-value=4.2e-141 Score=1188.46 Aligned_cols=837 Identities=33% Similarity=0.590 Sum_probs=721.7
Q ss_pred CcccccCcccccccccccccCCcEEEeCceEEEEecCCC-ccCcccCCCCCeEEEccEEEEEeecCCCcccccCCCceEE
Q psy2190 60 KEKVCTDIDIRNYVSSFDVLKDCTVVEGFVQINLIDNST-AQDFENITFPKLREITEYLSFYHVSGLKSIGKLFPNLAII 138 (976)
Q Consensus 60 c~k~C~~~~~~~~~~~~~~~~~Ct~i~G~l~i~~~~~~~-~~~~~~~sf~~i~eItG~l~i~~~~~l~sl~~~f~nL~~I 138 (976)
|...|.|+++++...+++++.|||+|+|.|.|+++.... ++++.+++|++|+|||+||+++++.+|.||.++||||+||
T Consensus 30 ~gei~~g~dirnk~~~l~~L~NCTvVeG~l~I~lv~k~~~~~~f~~~sfP~LteITdyLllfrv~GL~sL~dlFPnLtVI 109 (1025)
T KOG4258|consen 30 SGEITPGIDIRNKCKNLHRLENCTVVEGHLMILLVFKTQRGEDFRDYSFPKLTEITDYLLLFRVYGLESLRDLFPNLTVI 109 (1025)
T ss_pred cCCcCcCcchhhhHHhhhhhcCceEEeeEEEEEEEEeccccccchhccCcchheeeeeEEEEEeechhhHHHhCCceEEE
Confidence 445567999999999999999999999999999986654 5788899999999999999999999999999999999999
Q ss_pred eccccccceEEEEEecCcceEecccccceeeeeeEEEeeCc--------cchhcccc--CcEEEccCcC-cccccCCCCC
Q psy2190 139 RGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNP--------DWKRITKK--GSVVINDIKS-KEACLQEGEP 207 (976)
Q Consensus 139 ~g~~l~~~~~l~i~~n~~l~~lgl~~L~~i~~g~v~i~~N~--------~w~~i~~~--~~~~~~~n~~-~~~C~~~~C~ 207 (976)
||+.||.+|||+|++|++|++|||++|..|.+|.|+|..|| +|..|+.+ ++. |..|++ ..+|.+. ||
T Consensus 110 RG~rLF~nYALvI~em~~L~elgL~~L~~I~rG~VRIe~N~~LCyl~TVDW~~L~~s~~~nh-iv~n~~~~~eC~~v-Cp 187 (1025)
T KOG4258|consen 110 RGRRLFLNYALVIFEMPNLRELGLPKLVAIQRGAVRIEKNPKLCYLSTVDWSLLLDSVGNNH-IVLNKKNPEECGDV-CP 187 (1025)
T ss_pred ccceehhceeEEEEecCchHHhchHHHHhhhcCcEEeccCcceeEEeeecHHHhcCccccce-EEecCCCccccccc-CC
Confidence 99999999999999999999999999999999999999999 99999987 444 344443 3899977 98
Q ss_pred CC-------CC----CCCCCCCCCCCCcccccCCC---------Cc-ccccccCccCCCCC-CccccccceeecCccccc
Q psy2190 208 GA-------RS----GPEKCEFYWSNNDCQLIKEI---------EE-CHPLCAGGCTGKRA-EDCFVCIGFIHDGHCLDQ 265 (976)
Q Consensus 208 ~~-------~~----~~~~~~~Cw~~~~Cq~~C~~---------~~-C~~~C~~~C~g~~~-~~C~~C~~~~~~~~Cv~~ 265 (976)
+. |. ++.....||+..+||++||. ++ ||++|+|||..|+. +.|.+|+++++.|.||++
T Consensus 188 g~s~~~~~~~~kt~~~~~~~~rCWt~~~CQK~Cp~~~g~gC~ang~cCH~eClGgC~~~~dptaC~aCr~~y~~G~CV~~ 267 (1025)
T KOG4258|consen 188 GTSSEKEFICNKTTINGEVTYRCWTNSHCQKSCPENCGNGCTANGECCHEECLGGCSQPNDPTACVACRGLYDDGVCVEA 267 (1025)
T ss_pred ccccccccCCcceeeccceeeEecCCCchhccCccccccCcccccccccHhhccCcCCCCChhHhHHhhccccCCceecc
Confidence 72 11 45556679999999999996 56 99999999999987 799999999999999999
Q ss_pred ccccccCCccceeeeecCceeeeccCccccccccccCCCCCccccCCCCCCcccCCCCcccccCCcccccCCCCcccCCC
Q psy2190 266 CPPNLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNTTAD 345 (976)
Q Consensus 266 Cp~~~~~~~~~~~~~~~~~~~y~~~~~~C~~~~~C~~~~~~~tC~gp~~~~~~C~~c~~~~~~~~~Cv~~Cp~g~~~~~~ 345 (976)
||+++ |.++++||+++++|.++++ |.-+.. .-..++++|+.+||+||..+..
T Consensus 268 Cp~~~----------------Y~~e~~RCvt~~~C~~l~~---~~~~~i---------~G~~~~~~Cv~~CPsGy~~N~~ 319 (1025)
T KOG4258|consen 268 CPPDY----------------YLFENWRCVTREECALLHS---LSNSVI---------SGVIHAGQCVAKCPSGYKRNSS 319 (1025)
T ss_pred CCcch----------------hhhccceeccHHHHHHhcC---cccccc---------cceeccccchhhCCCcceecCc
Confidence 99999 9999999999999997664 111111 1123678999999999998877
Q ss_pred CCCcccCC-CCCCCCC-c-ceeeccccccccCCCeEEcCceEEEEecCCCchhHHHHHHhhccceeeeeEEEEEeecCcc
Q psy2190 346 ETSCVPCP-DCPKVCK-G-VHVKSIEVARSTKGCTVINGSLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQ 422 (976)
Q Consensus 346 ~~~C~~C~-~C~~~C~-g-~~~~~~~~~~~~~~C~~i~G~l~i~~~~g~~~~~~~~l~~~l~~i~~I~G~L~i~~s~~l~ 422 (976)
...|.+|. .|+++|. | .+|+|+.+|+.++||++|+|+|+|.|+.| .++++||+..|+.|++|+|||+|.+|.+|.
T Consensus 320 ~~~C~~C~g~C~~vC~~~~~tIds~~~Aq~LrgC~iinGsL~I~IR~~--~n~a~eLe~~l~~i~eItGylKVrhS~~Lv 397 (1025)
T KOG4258|consen 320 SSECVKCEGPCPKVCEPGTKTIDSVADAQNLRGCTIINGSLTINIRNG--NNIASELENALGLIEEITGYLKVRHSSALV 397 (1025)
T ss_pred ccceeccCCCCcceeccCceEecchhhhHHhcCceEEcceEEEEEcCC--CchHHHHHHHhhhhheeeeeEEEEecchhh
Confidence 89999999 9999998 5 57999999999999999999999999998 899999999999999999999999999999
Q ss_pred ccccccccceecceeeeeeCCcccCCccCceEEEEEeCCCcccccCcCCCCCCCCCceeEecceEEEecCcccchhhhcc
Q psy2190 423 SLSFLKSLQSIHGEREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYE 502 (976)
Q Consensus 423 ~l~fl~nL~~I~g~~~~~~~~~~~~~~~~~~~l~i~~n~~L~~l~~~~~~~~~~~~~~~i~~g~v~~~~N~~Lc~~~~~~ 502 (976)
||+||+|||.|+|+.| .+++|+|+|+||+||++||+|+ ..++|..|+++||+||+||+.+|.+
T Consensus 398 SL~FlrNLr~IrGd~l----------~~~~Ys~yv~dN~nL~qLwd~~-------~~Lti~~G~lffh~NpkLC~~~I~q 460 (1025)
T KOG4258|consen 398 SLSFLRNLRLIRGDPL----------EEGNYSFYVLDNQNLQQLWDWS-------HQLTIMRGKLFFHFNPKLCLEEIHQ 460 (1025)
T ss_pred hHHHHhhHHHhccchh----------hcCceEEEEecCcCHHhcCCcc-------ceeEEecceEEEecChHHHHHHHHH
Confidence 9999999999999999 9999999999999999999997 3499999999999999999999999
Q ss_pred ceeccccccC-CccccccccCCCcccccceeeeE---EEeccceEEEEeeccCCCCCCCc---eeEEEEEEEcCCCCccc
Q psy2190 503 LINVTNITYD-SDFDVLKESNGDEFICGFSNLAL---VVLNKTDVSIRFQLNENEKVPDN---QRYVLFYMKADNGMYTD 575 (976)
Q Consensus 503 ~~~~~~~~~~-~~~~v~~~sNg~~~~C~~~~L~v---~vs~~si~~LsW~~~p~~~~~d~---~gY~v~y~~~~~~n~t~ 575 (976)
++.++++.++ .+.|++..+||+++.|+...|++ .++.++|. |+|. ++++ .|. +||.++|+++|.+|+|+
T Consensus 461 le~~~~t~~~~~~~dis~~TNGera~Ce~~~l~~~~~~~~~dsi~-lrW~--~~~~-~d~r~llg~~~~yKEaP~qNvT~ 536 (1025)
T KOG4258|consen 461 LEEVLGTKGRQSKADISLRTNGERAICEDLVLQFSSTVTSADSIL-LRWE--RYQP-PDMRDLLGFLLHYKEAPFQNVTE 536 (1025)
T ss_pred HHHhhCCCCCccccccCccCCCceeecccceeeeeeEEeecceeE-EEec--ccCC-cchhhhheeeEeeccCCccccce
Confidence 9999999887 78899999999999999999998 78889999 9999 8888 666 99999999999999999
Q ss_pred ccCCCccCCCCcEEEecCCC--------CceEEeeCCccCceEEEEEEEEeC-----CCCCCCCeEEEecCCCCCCCCce
Q psy2190 576 FDTVGSCSASGWKFKDINSK--------NKTVEVMNLEPATEYAFFVKIYNS-----QRIVRSNISLQTTLPTKPSIPYQ 642 (976)
Q Consensus 576 ~~~~~~c~~~~W~~~~v~~~--------~~~~~l~~L~P~T~Y~~~V~a~n~-----g~g~~S~~~~~~T~~~~Ps~P~~ 642 (976)
++|+++|++++|.+.++..+ ...+.+.+|+|||+|+++|++.+. ...+.|++.+++|.++.|++|..
T Consensus 537 ~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~ 616 (1025)
T KOG4258|consen 537 EDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLD 616 (1025)
T ss_pred ecCccccccCcceEEeccCCcCCCccccccceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcch
Confidence 99999999999999988765 346789999999999999999975 34489999999999999999999
Q ss_pred eEEEEecCcEEEEEecCCCCCCCceeEEEEEEEE-ecCcCcccccccccccc--ccCCCCCcchhccccccccccCCCCc
Q psy2190 643 FEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYY-QDYDKDYLDTRNYCVDK--LRDLSDSTYAASHLMRFAKTTRKPLK 719 (976)
Q Consensus 643 l~~~~~s~tsi~vsW~pP~~~nG~I~~Y~V~~~~-~~~~~~~~~~~~~c~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (976)
+-..+.+++.|.|+|+||..|||.|++|.| .| ++.++.++.++|||++. +|.+.+.. .++.++.. ...
T Consensus 617 ~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv--~wer~~~~~yl~~~nYC~~~~k~p~~~~~p-~~~~ed~d------~~~ 687 (1025)
T KOG4258|consen 617 VLSKSNSSSQILLKWKPPSQPNGNLTHYLV--VWERQAEDGYLEQRNYCHKGLKLPIRADLP-SFDSEDMD------PLL 687 (1025)
T ss_pred hhhccCcchheeEEecCCCCCCCceeEEEE--EEEeccCCchHHHhccccccccccccccCC-CCchhhcc------hhh
Confidence 999999999999999999999999999999 99 88888999999999983 44443332 11111111 011
Q ss_pred ccC--CCCCCCCC-cc--------chhhhcccchhccccccceEEecc-cCCcccccCCCCCCCCcc-------------
Q psy2190 720 ECC--GKFPCDFD-HE--------SFQYMTSQMQLIQQCDNYIFKYLQ-YNDLHKAYGGDLPSLGNI------------- 774 (976)
Q Consensus 720 ~~~--~~~~c~c~-~~--------~~~~~~~~~~fe~~~~~~v~~~~~-~~~~~~r~v~~~~~~~~~------------- 774 (976)
+.+ ..+||.|| .+ ++.+++. |||++++.+++ + ++.++++++..+.+....
T Consensus 688 e~e~~~~~Cc~c~~~~~~~~~e~eea~~~~~---FEd~L~n~i~v--pr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~ 762 (1025)
T KOG4258|consen 688 EMEGHTGPCCSCPPTESYPQYEDEEASEQKT---FEDFLHNAIFV--PRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPP 762 (1025)
T ss_pred hhccCCCCCCCCCcccccCchhhHHHHHHHH---Hhhhccceeee--cccCcccccccccccceeeccccccccCCCCCC
Confidence 111 35688887 22 5566665 99999999999 8 577777777665432211
Q ss_pred -cCCCCCCCcce-e-eecccEEEEcCCccccEEEEEEEEEecCccCCCCCCCCCCCCCCccceeEEecccCCCCCCCCCC
Q psy2190 775 -SSRLPDREEND-V-LYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEVDHLADTIPAD 851 (976)
Q Consensus 775 -~~~~~~~~~~~-v-~~~~~~~~l~gL~p~T~Y~~~V~A~~~~~~~~~~~~~~~~~g~s~~~~~~~~T~~~~~~~~~p~~ 851 (976)
+.+.+-...+. . .++.+++++.+|+|||.|.+.++||+.+ +...+||..+.+.+||++..++|.+|++
T Consensus 763 ~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~---------~~~~~cS~a~~v~~RT~~~~~aD~i~g~ 833 (1025)
T KOG4258|consen 763 TTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNHA---------TPKCGCSHAAFVFARTMPTMGADDIPGP 833 (1025)
T ss_pred CCCCccccccCcccccccchhhhhhccccchhhhhhHhhhccc---------ccccccchhhhhhhccccccccccCCCc
Confidence 11111111111 1 3688899999999999999999999998 5666789999999999999999999999
Q ss_pred eeEEEe-cCCcEEEEEecCCCCCCCceEEEEEEEEEcCCCCcceeeeeeccccCCCcEEEeecCCceEEEEEEEEeCCCC
Q psy2190 852 SLNFEM-INASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGE 930 (976)
Q Consensus 852 v~~~~~-~~~~sv~l~W~~P~~~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~pg~Y~~~V~A~t~aG~ 930 (976)
+.++.. +. +++.|+|.+|..|||.|+.|.|+|++...+ ....|+++..+...+++.|..|.||.|+++|+|.+.||+
T Consensus 834 v~we~~~~~-~~v~l~w~EP~~pNGli~~Y~Vk~r~~~~e-t~v~cvsR~~~~k~~gv~l~~l~~G~y~~~vratSlaGn 911 (1025)
T KOG4258|consen 834 VTWECHIEM-NSVILRWLEPKEPNGLILNYEVKYRRNGDE-THVECVSRMDYAKAGGVYLKRLNPGNYSVRVRATSLAGN 911 (1025)
T ss_pred eeEecccCc-ceEEEecCCCCCCCccEEEEEEEEeeccCc-chhhhhhhhhhhhcCceEEEecCCCcEEEEEEEEeeccC
Confidence 998887 44 899999999999999999999999987765 667799999999999999999999999999999999999
Q ss_pred CCCCCcEeEEEecCCCCc--eEEEEehhhHHHHHHHHHheeeeEEE
Q psy2190 931 GPWTSWKPCVIESAETPM--SVYVIVVVTGLVILFCMLAVILFLIL 974 (976)
Q Consensus 931 G~~S~~~~~~~~~~~~~~--~~~iii~~v~~~lll~~l~~~l~~~~ 974 (976)
|+|++++.|.+.+++... ...|+.+++.+++|++++++.+|+|+
T Consensus 912 g~~t~~~~~~v~~~~~~~~~~~~ii~~~~~v~~l~~~~~~~~~~~~ 957 (1025)
T KOG4258|consen 912 GSWTESVIFYVSDEDGLQAFIHEIIDGPLEVLLLLAVLAGGIYIYI 957 (1025)
T ss_pred CCCcCCcceEEecCcccchhhHHHHhccHHHHHHHHHHhheeEEEE
Confidence 999999999999886332 34567777777777777777776654
No 2
>KOG1025|consensus
Probab=100.00 E-value=7.9e-71 Score=620.23 Aligned_cols=412 Identities=29% Similarity=0.526 Sum_probs=356.0
Q ss_pred cccccCccccccc--------ccc-cccCCcEEEeCceEEEEecCCCccCcccCCCC-CeEEEccEEEEEeecCCCcccc
Q psy2190 61 EKVCTDIDIRNYV--------SSF-DVLKDCTVVEGFVQINLIDNSTAQDFENITFP-KLREITEYLSFYHVSGLKSIGK 130 (976)
Q Consensus 61 ~k~C~~~~~~~~~--------~~~-~~~~~Ct~i~G~l~i~~~~~~~~~~~~~~sf~-~i~eItG~l~i~~~~~l~sl~~ 130 (976)
.++|.|...+.+. .++ +.|+||++|.|||+|+.... ..+|||. +|+||||||+|++. .+.-+.
T Consensus 26 ~~vC~GT~n~Ls~~g~~E~~~~~L~~~Y~~C~vV~GNLEiT~i~~-----n~dLsFl~~irEVtGyvLIa~n-~v~~ip- 98 (1177)
T KOG1025|consen 26 QKVCSGTTNGLSVPGTGENHYRDLRKMYENCEVVMGNLEITWIEH-----NADLSFLDNIREVTGYVLIAHN-QVRKIP- 98 (1177)
T ss_pred CCcccCCcCCccccCCHHHHHHHHHHHHcCCeEEecceEEEEecc-----cccchHHHHHHhhheEEEEEec-ceeecc-
Confidence 5788887666431 233 45799999999999999854 3456776 99999999999996 366664
Q ss_pred cCCCceEEeccccccc-eEEEEEecCc-ceEecccccceeeeeeEEEeeCc--------cchhcccc---CcE-EEccCc
Q psy2190 131 LFPNLAIIRGNTLIWD-YTFSVFSMFN-LQEIGLHRLTHIMKGTVVILRNP--------DWKRITKK---GSV-VINDIK 196 (976)
Q Consensus 131 ~f~nL~~I~g~~l~~~-~~l~i~~n~~-l~~lgl~~L~~i~~g~v~i~~N~--------~w~~i~~~---~~~-~~~~n~ 196 (976)
|+|||||||+.+|++ |||.|+.|.+ |++|.|++|++|.+|+|+|++|| +|++|++. ... .+..|
T Consensus 99 -lp~LriIrG~~lfe~~yAL~V~~Ny~~l~el~lr~L~eIlnG~V~i~~N~~LC~~dtI~W~dIv~~~~~~~~~~~~~n- 176 (1177)
T KOG1025|consen 99 -LPNLRIIRGTQLFEDKYALAVLLNYDGLRELVLRNLTEILNGGVYIQNNPKLCYMDTIDWKDIVRDPTTSALTLVFTN- 176 (1177)
T ss_pred -ccceEEEecceeeccceeEEEEeccccceeeccchHHHHhcCceEEecCccceeeccccHHHHhcCCCcchheEEccC-
Confidence 999999999999976 9999999987 99999999999999999999999 99999987 222 13334
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCC--CCcccc----cCCC----------Cc-ccccccCccCCCCCCccccccceeec
Q psy2190 197 SKEACLQEGEPGARSGPEKCEFYWS--NNDCQL----IKEI----------EE-CHPLCAGGCTGKRAEDCFVCIGFIHD 259 (976)
Q Consensus 197 ~~~~C~~~~C~~~~~~~~~~~~Cw~--~~~Cq~----~C~~----------~~-C~~~C~~~C~g~~~~~C~~C~~~~~~ 259 (976)
+..|.+ |+..| .++||| +++||+ +|+. .+ ||.+|++||+||.+++|+||++|.+.
T Consensus 177 -~~sc~k--ChesC-----~~rCWG~g~~dCQ~ltrtvCa~qC~rC~gp~p~~CCh~~CagGCtGp~~~dC~AC~~f~d~ 248 (1177)
T KOG1025|consen 177 -GSSCPK--CHESC-----KGRCWGPGSEDCQTLTRTVCAPQCSRCFGPNPTDCCHSECAGGCTGPKDKDCIACRKFNDS 248 (1177)
T ss_pred -CccCCC--ccccc-----CCCCcCCCchHHhHHhHhhCchhhccccCCCchhhHHHHhccCCCCCCCCCeeeecccccC
Confidence 344888 88765 568999 578997 5665 46 99999999999999999999999999
Q ss_pred CcccccccccccCCccceeeeecCceeeeccCccccccccccCCCCCccccCCCCCCcccCCCCcccccCCcccccCCCC
Q psy2190 260 GHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPG 339 (976)
Q Consensus 260 ~~Cv~~Cp~~~~~~~~~~~~~~~~~~~y~~~~~~C~~~~~C~~~~~~~tC~gp~~~~~~C~~c~~~~~~~~~Cv~~Cp~g 339 (976)
|.|+++||+...|++.||+.+.||++||.|.+ .||+ +|+ .+|+++++.||.+||++
T Consensus 249 G~C~~~CP~~~~yN~~T~~le~NPegkY~~Ga-~CVk--~CP---------------------~n~lvD~~sCVRaCp~~ 304 (1177)
T KOG1025|consen 249 GICVETCPQLKVYNPTTFQLEPNPEGKYQYGA-TCVK--ECP---------------------HNLLVDNGSCVRACPDD 304 (1177)
T ss_pred ceecccCCCceeEcCcceEEeeCCCccccccC-eehh--hCC---------------------chhEecCCceeeecCCc
Confidence 99999999999999999999999999999999 9998 475 37889999999999999
Q ss_pred cccC--CCCCCcccCC-CCCCCCCcceeeccc-cccccCCCeEEcCceEEEEec--CCCc----hhHHHHHHhhccceee
Q psy2190 340 YNTT--ADETSCVPCP-DCPKVCKGVHVKSIE-VARSTKGCTVINGSLGIQIQT--GDSE----VVHQELEKGLGMITNI 409 (976)
Q Consensus 340 ~~~~--~~~~~C~~C~-~C~~~C~g~~~~~~~-~~~~~~~C~~i~G~l~i~~~~--g~~~----~~~~~l~~~l~~i~~I 409 (976)
.+.. ++.+.|+||. .|+|+|.|..+.+.. +++.|+|||.|+|+|.|...+ ||++ .+.+|-+++|++|+||
T Consensus 305 ~~e~~~~g~~~Ce~C~~~CpK~C~g~g~~~~~~NI~~f~nCtkI~GnL~il~~~~~GD~~~~~~pldPE~L~Vf~TVkeI 384 (1177)
T KOG1025|consen 305 KMEVEENGVRMCEKCRGPCPKACTGIGHGSLETNIDNFENCTKIDGNLIILPTGFYGDPYHKIPPLDPEQLNVFETVKEI 384 (1177)
T ss_pred ccchhccCceeeeecCCCCccccccccccchhhhhhhccCceEEcCeeEEEeecccCCchhccCCCCHHHHHHHHHHHHh
Confidence 8643 5678899999 999999998887777 599999999999999999874 8876 3456888999999999
Q ss_pred eeEEEEEee-cCccccccccccceecceeeeeeCCcccCCccCceEEEEEeCCCcccccCcCCCCCCCCCceeEecceEE
Q psy2190 410 TGHLKISHS-LPIQSLSFLKSLQSIHGEREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKIL 488 (976)
Q Consensus 410 ~G~L~i~~s-~~l~~l~fl~nL~~I~g~~~~~~~~~~~~~~~~~~~l~i~~n~~L~~l~~~~~~~~~~~~~~~i~~g~v~ 488 (976)
+|||.|+.+ +++++|+||+||++|+||.| .+ .+++.|+.+.+|++|.+.| ++.|+.|.|+
T Consensus 385 TgyL~I~~wppn~~dls~f~NL~~I~GR~L----------~n-g~~~li~~~~~itsL~lrS--------LKeIs~G~v~ 445 (1177)
T KOG1025|consen 385 TGYLNIQSWPPNFTDLSVFSNLQTIGGRKL----------HN-GFALLILQCLNLTSLGLRS--------LKEISAGAVL 445 (1177)
T ss_pred hheEEeeecCCCCccchhhccceeecccch----------hh-hHHHHHHHhcCcceeccch--------hhhccCCcEE
Confidence 999999987 46999999999999999999 77 6777788899999999876 8999999999
Q ss_pred EecCcccchhhhccceeccccccCCccccccccCCCcccccceeeeE
Q psy2190 489 FHDNPKLCLDKIYELINVTNITYDSDFDVLKESNGDEFICGFSNLAL 535 (976)
Q Consensus 489 ~~~N~~Lc~~~~~~~~~~~~~~~~~~~~v~~~sNg~~~~C~~~~L~v 535 (976)
|+.|++|||.+.++|..++.. .+..+.+..|.+...|+.+....
T Consensus 446 I~~N~~LCYv~ti~W~~i~~~---~~q~l~i~~Nr~~~~C~~eg~vC 489 (1177)
T KOG1025|consen 446 ISHNRNLCYVHTINWTKIFRT---PEQRLAIAENRPADLCEAEGRVC 489 (1177)
T ss_pred EecCCceEEEeccChHHhcCC---cccceehhhcCchhhhhccCchh
Confidence 999999999999999999875 34566778999999998887655
No 3
>KOG1025|consensus
Probab=100.00 E-value=4.2e-58 Score=517.58 Aligned_cols=286 Identities=28% Similarity=0.571 Sum_probs=253.4
Q ss_pred CceeeeCCeeeccCCCCceecCCCCCCCCCCCCCCCCceecCCCCcccccCcccccccccccccCCcEEEeCceEEEEec
Q psy2190 16 AKWRPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFDQTKEKVCTDIDIRNYVSSFDVLKDCTVVEGFVQINLID 95 (976)
Q Consensus 16 ~~~~~~~~~C~~~Cp~~~~~~~~~~~~~~~~~~~~~~c~~c~~~c~k~C~~~~~~~~~~~~~~~~~Ct~i~G~l~i~~~~ 95 (976)
+.|+.++|+|||.||+++|+++. +|.++|+||.|+|||+|.|+++.+.-+||+.|+|||+|.|+|.|...+
T Consensus 288 ~n~lvD~~sCVRaCp~~~~e~~~---------~g~~~Ce~C~~~CpK~C~g~g~~~~~~NI~~f~nCtkI~GnL~il~~~ 358 (1177)
T KOG1025|consen 288 HNLLVDNGSCVRACPDDKMEVEE---------NGVRMCEKCRGPCPKACTGIGHGSLETNIDNFENCTKIDGNLIILPTG 358 (1177)
T ss_pred chhEecCCceeeecCCcccchhc---------cCceeeeecCCCCccccccccccchhhhhhhccCceEEcCeeEEEeec
Confidence 44777888888888888888765 467999999999999999999986666999999999999999999875
Q ss_pred CC----------CccCcccCCCCCeEEEccEEEEEee-cCCCcccccCCCceEEeccccccceEEEEEecCcceEecccc
Q psy2190 96 NS----------TAQDFENITFPKLREITEYLSFYHV-SGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHR 164 (976)
Q Consensus 96 ~~----------~~~~~~~~sf~~i~eItG~l~i~~~-~~l~sl~~~f~nL~~I~g~~l~~~~~l~i~~n~~l~~lgl~~ 164 (976)
+. ++++|.. |.+||||||||.|+.| ++|++|+ ||+||++|+||.|++++|+.|+.+.+|++|||+|
T Consensus 359 ~~GD~~~~~~pldPE~L~V--f~TVkeITgyL~I~~wppn~~dls-~f~NL~~I~GR~L~ng~~~li~~~~~itsL~lrS 435 (1177)
T KOG1025|consen 359 FYGDPYHKIPPLDPEQLNV--FETVKEITGYLNIQSWPPNFTDLS-VFSNLQTIGGRKLHNGFALLILQCLNLTSLGLRS 435 (1177)
T ss_pred ccCCchhccCCCCHHHHHH--HHHHHHhhheEEeeecCCCCccch-hhccceeecccchhhhHHHHHHHhcCcceeccch
Confidence 42 4556654 8899999999999998 4899998 9999999999999999999999999999999999
Q ss_pred cceeeeeeEEEeeCc--------cchhcccc--CcEEEccCcCcccccCCCCCCCCCCCCCCCCCCCCCcccccCCCCc-
Q psy2190 165 LTHIMKGTVVILRNP--------DWKRITKK--GSVVINDIKSKEACLQEGEPGARSGPEKCEFYWSNNDCQLIKEIEE- 233 (976)
Q Consensus 165 L~~i~~g~v~i~~N~--------~w~~i~~~--~~~~~~~n~~~~~C~~~~C~~~~~~~~~~~~Cw~~~~Cq~~C~~~~- 233 (976)
||+|+.|.|+|+.|. +|+.|++. +++.|.+|++.+.|..+ ++
T Consensus 436 LKeIs~G~v~I~~N~~LCYv~ti~W~~i~~~~~q~l~i~~Nr~~~~C~~e---------------------------g~v 488 (1177)
T KOG1025|consen 436 LKEISAGAVLISHNRNLCYVHTINWTKIFRTPEQRLAIAENRPADLCEAE---------------------------GRV 488 (1177)
T ss_pred hhhccCCcEEEecCCceEEEeccChHHhcCCcccceehhhcCchhhhhcc---------------------------Cch
Confidence 999999999999999 99999998 77779999999999998 77
Q ss_pred cccccc-CccCCCCCCccccccceeecCcccccccccccCCccceeeeecCceeeeccCccccc-cccccCCCCCccccC
Q psy2190 234 CHPLCA-GGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLT-REECLNNKRVTTKNF 311 (976)
Q Consensus 234 C~~~C~-~~C~g~~~~~C~~C~~~~~~~~Cv~~Cp~~~~~~~~~~~~~~~~~~~y~~~~~~C~~-~~~C~~~~~~~tC~g 311 (976)
||..|. +|||||+++||++|++|.++|+||++|.--. +.+||. +++.|.. |+||. ||+|
T Consensus 489 C~~lCs~~GCWGpgp~qClsCrn~~rgg~CVe~C~~l~------------g~~rf~-~~~~C~~ChPEC~------TCnG 549 (1177)
T KOG1025|consen 489 CDKLCSSGGCWGPGPDQCLSCRNFSRGGTCVEKCNLLG------------GEPRFV-NSRECERCHPECE------TCNG 549 (1177)
T ss_pred hhhhcCCCCCcCCCCccceeccccccCceehhhccccC------------Cccccc-ccceecccChhhc------cCCC
Confidence 999995 8999999999999999999999999997432 344432 4469999 99999 9999
Q ss_pred CCCCCcccCCCCcccccCCcccccCCCCcccC---------CCCCCcccCC-CCCCCCCcc
Q psy2190 312 PQNMRMSYSDKAKWRPFNGSCMEECPPGYNTT---------ADETSCVPCP-DCPKVCKGV 362 (976)
Q Consensus 312 p~~~~~~C~~c~~~~~~~~~Cv~~Cp~g~~~~---------~~~~~C~~C~-~C~~~C~g~ 362 (976)
+++++ |+.|+||. ++.+||..||.|..+. +....|+||| +|++.|.|+
T Consensus 550 ~G~d~--C~~CaHf~-dgp~CV~~CP~G~~G~~s~ii~kypd~~~~C~~Ch~nCth~c~~~ 607 (1177)
T KOG1025|consen 550 PGADN--CLQCAHFR-DGPHCVSDCPDGVTGPKSTIIWKYPDPQIECRPCHPNCTHGCLGP 607 (1177)
T ss_pred CCccc--hhhhhhcC-CCcchhccCCCcccCCCCceeeecCCCccccccCCCcccccccCC
Confidence 99999 99999995 9999999999998644 3457899999 999999998
No 4
>KOG4258|consensus
Probab=100.00 E-value=1.5e-33 Score=319.65 Aligned_cols=155 Identities=30% Similarity=0.455 Sum_probs=134.8
Q ss_pred eeeCCeeeccCCCCceecCCCCCCCCCCCCCCCCceecCCCCccccc-CcccccccccccccCCcEEEeCceEEEEecCC
Q psy2190 19 RPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFDQTKEKVCT-DIDIRNYVSSFDVLKDCTVVEGFVQINLIDNS 97 (976)
Q Consensus 19 ~~~~~~C~~~Cp~~~~~~~~~~~~~~~~~~~~~~c~~c~~~c~k~C~-~~~~~~~~~~~~~~~~Ct~i~G~l~i~~~~~~ 97 (976)
++|+|+||.+||+||++... .+.|++|.|+|+|+|. +.....+...++.+++||+|+|+|.|.++.+.
T Consensus 300 ~~~~~~Cv~~CPsGy~~N~~-----------~~~C~~C~g~C~~vC~~~~~tIds~~~Aq~LrgC~iinGsL~I~IR~~~ 368 (1025)
T KOG4258|consen 300 VIHAGQCVAKCPSGYKRNSS-----------SSECVKCEGPCPKVCEPGTKTIDSVADAQNLRGCTIINGSLTINIRNGN 368 (1025)
T ss_pred eeccccchhhCCCcceecCc-----------ccceeccCCCCcceeccCceEecchhhhHHhcCceEEcceEEEEEcCCC
Confidence 67889999999999987643 4789999999999998 65433367888999999999999999999875
Q ss_pred CccCcccCCCCCeEEEccEEEEEeecCCCcccccCCCceEEeccccccc-eEEEEEecCcceEecccc--cceeeeeeEE
Q psy2190 98 TAQDFENITFPKLREITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIWD-YTFSVFSMFNLQEIGLHR--LTHIMKGTVV 174 (976)
Q Consensus 98 ~~~~~~~~sf~~i~eItG~l~i~~~~~l~sl~~~f~nL~~I~g~~l~~~-~~l~i~~n~~l~~lgl~~--L~~i~~g~v~ 174 (976)
+.++...-+|.+|+||||||+|++++.|.||+ ||+||+.|||+.|+.+ |||+|+||+||++||.++ |+ |..|+++
T Consensus 369 n~a~eLe~~l~~i~eItGylKVrhS~~LvSL~-FlrNLr~IrGd~l~~~~Ys~yv~dN~nL~qLwd~~~~Lt-i~~G~lf 446 (1025)
T KOG4258|consen 369 NIASELENALGLIEEITGYLKVRHSSALVSLS-FLRNLRLIRGDPLEEGNYSFYVLDNQNLQQLWDWSHQLT-IMRGKLF 446 (1025)
T ss_pred chHHHHHHHhhhhheeeeeEEEEecchhhhHH-HHhhHHHhccchhhcCceEEEEecCcCHHhcCCccceeE-EecceEE
Confidence 54433333589999999999999999999998 9999999999999988 999999999999999977 44 9999999
Q ss_pred EeeCc--cchhccc
Q psy2190 175 ILRNP--DWKRITK 186 (976)
Q Consensus 175 i~~N~--~w~~i~~ 186 (976)
|++|| +.++|.+
T Consensus 447 fh~NpkLC~~~I~q 460 (1025)
T KOG4258|consen 447 FHFNPKLCLEEIHQ 460 (1025)
T ss_pred EecChHHHHHHHHH
Confidence 99999 6666654
No 5
>KOG4221|consensus
Probab=99.96 E-value=1.1e-26 Score=273.44 Aligned_cols=414 Identities=19% Similarity=0.159 Sum_probs=258.8
Q ss_pred cCcccchhhhccceeccccccC---CccccccccCCCcccccceeeeE-EEeccceEEEEeeccCCCCCCCc-eeEEEEE
Q psy2190 491 DNPKLCLDKIYELINVTNITYD---SDFDVLKESNGDEFICGFSNLAL-VVLNKTDVSIRFQLNENEKVPDN-QRYVLFY 565 (976)
Q Consensus 491 ~N~~Lc~~~~~~~~~~~~~~~~---~~~~v~~~sNg~~~~C~~~~L~v-~vs~~si~~LsW~~~p~~~~~d~-~gY~v~y 565 (976)
....|-+...+.++..+..... ....+.+.++++ .+..|.+ .+++.+|. ++|++ |.-+ ..+ ++|.++|
T Consensus 486 tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE----gp~~~~a~ats~~ti~-v~Wep-P~~~-n~~I~~yk~~y 558 (1381)
T KOG4221|consen 486 TVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE----GPVQLQAYATSPTTIL-VTWEP-PPFG-NGPITGYKLFY 558 (1381)
T ss_pred EeeecccceeEEEEEeccCcccCCccCCceEEecCCC----CCccccccccCcceEE-EEecC-CCCC-CCCceEEEEEE
Confidence 3455777777777777664321 444555677777 2222666 88999999 99994 2223 334 9999999
Q ss_pred EEcCCCCcccccCCCccCCCCcEEEecCCCCceEEeeCCccCceEEEEEEEEeC-CCCCCCCeEEEecCCCCCC-CCcee
Q psy2190 566 MKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS-QRIVRSNISLQTTLPTKPS-IPYQF 643 (976)
Q Consensus 566 ~~~~~~n~t~~~~~~~c~~~~W~~~~v~~~~~~~~l~~L~P~T~Y~~~V~a~n~-g~g~~S~~~~~~T~~~~Ps-~P~~l 643 (976)
.+. +.+.|..++.. ...++|.+|+|+|+|.|+|.|+|. |.|..|+.+.++|+.+.|+ ||.||
T Consensus 559 s~~--------------~~~~~~~~~~n--~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl 622 (1381)
T KOG4221|consen 559 SED--------------DTGKELRVENN--ATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNL 622 (1381)
T ss_pred EcC--------------CCCceEEEecC--ccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcce
Confidence 986 24567776666 789999999999999999999999 9999999999999999995 55569
Q ss_pred EEEEecCcEEEEEecCCC--CCCCceeEEEEEEEEe-cCcCcccc----ccccccccccCCCCCc-chhccccccccccC
Q psy2190 644 EVVRVNSSSVTLRWGEPK--HPHGILEKYVIKAYYQ-DYDKDYLD----TRNYCVDKLRDLSDST-YAASHLMRFAKTTR 715 (976)
Q Consensus 644 ~~~~~s~tsi~vsW~pP~--~~nG~I~~Y~V~~~~~-~~~~~~~~----~~~~c~~~~~~~~~~~-~~~~~~~~~~~~~~ 715 (976)
++...++++|+|+|.||. ..||.|++|+| +|+ .....+.. ..+.-......+.+.+ |.+.+.+.+..+.|
T Consensus 623 ~lev~sStsVrVsW~pP~~~t~ng~itgYkI--Ry~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtG 700 (1381)
T KOG4221|consen 623 SLEVVSSTSVRVSWLPPPSETQNGQITGYKI--RYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTG 700 (1381)
T ss_pred EEEecCCCeEEEEccCCCcccccceEEEEEE--EecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCC
Confidence 999999999999999886 57999999999 994 33322211 1121122223333332 33443333322222
Q ss_pred CC----CcccCCCCCCCCCccchhhhcccchhc----cccccceEEecccCCccc-ccCCCCCCCCcccCCCCCCCccee
Q psy2190 716 KP----LKECCGKFPCDFDHESFQYMTSQMQLI----QQCDNYIFKYLQYNDLHK-AYGGDLPSLGNISSRLPDREENDV 786 (976)
Q Consensus 716 ~~----~~~~~~~~~c~c~~~~~~~~~~~~~fe----~~~~~~v~~~~~~~~~~~-r~v~~~~~~~~~~~~~~~~~~~~v 786 (976)
+. ..++... +-+.+ .+...+ ...++.+.+ .|-|+.+. ..+....-...-....++...+.+
T Consensus 701 paS~w~~aeT~~~--------d~~e~-vp~~ps~l~~~~g~~si~v-sW~Pp~~~~~~vrgY~ig~r~g~~~p~~~tIrl 770 (1381)
T KOG4221|consen 701 PASEWVSAETPES--------DLDER-VPGKPSELHVHPGSNSIVV-SWTPPPHPNIVVRGYKIGYRPGSGIPDTGTIRL 770 (1381)
T ss_pred CcccceeccCccc--------ccccc-CCCCCceeeeccCceeEEE-EeCCCCChhhhhcceEEeeecccCCCCCccEEe
Confidence 11 1110000 00000 000000 011122221 02222221 111111000000122334555666
Q ss_pred eecccEEEEcCCccccEEEEEEEEEecCccCC-------------------------------------------C---C
Q psy2190 787 LYPETSYTMVGLGHFRSIVFTISACRKEQKDK-------------------------------------------F---L 820 (976)
Q Consensus 787 ~~~~~~~~l~gL~p~T~Y~~~V~A~~~~~~~~-------------------------------------------~---~ 820 (976)
......|.|+.|+|...|.|+|+|+|..|+.. . +
T Consensus 771 ~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S~tsI~v~w~~~~~~ 850 (1381)
T KOG4221|consen 771 DEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALSSTSIRVTWADNKDQ 850 (1381)
T ss_pred cceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCCCCCCCcccccccccccceEEEEEecCCCc
Confidence 66777778888888888888888877776652 0 0
Q ss_pred ---------CCC--------------------------------------C-CCCCCCccceeEEecccCCCCCCCCCCe
Q psy2190 821 ---------PYD--------------------------------------P-EEGRCSEETLVMSRTEVDHLADTIPADS 852 (976)
Q Consensus 821 ---------~~~--------------------------------------~-~~~g~s~~~~~~~~T~~~~~~~~~p~~v 852 (976)
.+. . ...+.+.+..+..+|.+.+ |..+|.++
T Consensus 851 t~~~~~yTVr~~~~gi~~~~~~~~~~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~tle~~-P~sPP~d~ 929 (1381)
T KOG4221|consen 851 TTDNRIYTVRWSLTGIRNGTLYRYDNSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENRTLELV-PSSPPRDL 929 (1381)
T ss_pred cccceEEEEEEeecccccceeEEEecccccceeccCcCcCChhhhhhhhhhccCcCCcccceeeeeecccC-CCCCChhc
Confidence 000 0 0111122444555665543 66778888
Q ss_pred eEEEecCCcEEEEEecCCCCCCCceEEEEEEEEEcCCCC---cceeeeeeccccCCCcEEEeecCCc-eEEEEEEEEeCC
Q psy2190 853 LNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGN---SENMCRTRKDIDRDSGLYLYDYPAG-SYLFRLRVVSLG 928 (976)
Q Consensus 853 ~~~~~~~~~sv~l~W~~P~~~NG~I~~Y~I~y~~~~~~~---~~~~~v~~~~~~~~~~~~l~~L~pg-~Y~~~V~A~t~a 928 (976)
++.....++++.|.|.||..+||.|++|.|+|....... |....+.. ...++.+.+|.|+ .|.|+|+|+|.+
T Consensus 930 tv~p~e~P~~v~v~WqPp~e~nG~I~~Yii~Ys~~~n~~~~dWt~~t~~g----~~L~~~v~~l~p~t~yffkiQAr~~k 1005 (1381)
T KOG4221|consen 930 TVQPDEKPTTVIVHWQPPTEPNGEITEYIIYYSTDGNTPEHDWTIETTAG----AELSHQVPNLDPDTGYFFKIQARNEK 1005 (1381)
T ss_pred eecccCCCCccccccCCCcCCCCceeeEEEEEecCCCCchhhceeeeccc----chhhhccCCCCCCCceEEEEEeeccC
Confidence 877766448999999999999999999999998876542 22222221 2236789999995 999999999999
Q ss_pred CCCCCCCcEeEEEecC
Q psy2190 929 GEGPWTSWKPCVIESA 944 (976)
Q Consensus 929 G~G~~S~~~~~~~~~~ 944 (976)
|.||+|.++.+++...
T Consensus 1006 G~gp~s~~v~y~t~~~ 1021 (1381)
T KOG4221|consen 1006 GPGPFSSPVLYETSKA 1021 (1381)
T ss_pred CCCccccceeeecccc
Confidence 9999999999987654
No 6
>KOG3513|consensus
Probab=99.95 E-value=1.9e-26 Score=274.06 Aligned_cols=410 Identities=17% Similarity=0.211 Sum_probs=276.3
Q ss_pred cCceEEEEec-CCCc---hhHHHHHHhhccceeeeeEEEEEeecCccccccccccceecceeeeeeCCcccCCccCceEE
Q psy2190 380 NGSLGIQIQT-GDSE---VVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHGEREIIRGDTSESSVYSNYSL 455 (976)
Q Consensus 380 ~G~l~i~~~~-g~~~---~~~~~l~~~l~~i~~I~G~L~i~~s~~l~~l~fl~nL~~I~g~~~~~~~~~~~~~~~~~~~l 455 (976)
+|+|.|.-.. .|.. -++ +..|+++ +++|.|.|...+.++ + +.+|-.+=.|+.+.|+...+.+ ....+
T Consensus 478 dGtL~I~n~t~~DaG~YtC~A---~N~~G~a-~~~~~L~Vkd~tri~-~-~P~~~~v~~g~~v~l~Ce~shD---~~ld~ 548 (1051)
T KOG3513|consen 478 DGTLEISNVTRSDAGKYTCVA---ENKLGKA-ESTGNLIVKDATRIT-L-APSNTDVKVGESVTLTCEASHD---PSLDI 548 (1051)
T ss_pred CCcEEecccCcccCcEEEEEE---EcccCcc-ceEEEEEEecCceEE-e-ccchhhhccCceEEEEeecccC---CCcce
Confidence 5888887432 1111 122 3577777 678999999855555 3 8888888889998888776622 22222
Q ss_pred EEE---eCCCcccccCcCCCCCCCCCceeEecce----EEEecCcccchhhhccceeccccccC---CccccccccCCCc
Q psy2190 456 IVW---DNPNLQELWGWSNLPDGQRPKFEIKKGK----ILFHDNPKLCLDKIYELINVTNITYD---SDFDVLKESNGDE 525 (976)
Q Consensus 456 ~i~---~n~~L~~l~~~~~~~~~~~~~~~i~~g~----v~~~~N~~Lc~~~~~~~~~~~~~~~~---~~~~v~~~sNg~~ 525 (976)
.+. +...++..-. ..-..+.+|. ..+ .|-+|-..- ....++.+.-. ...++.+. .
T Consensus 549 ~f~W~~nG~~id~~~~--------~~~~~~~~~~~~g~L~i-~nv~l~~~G--~Y~C~aqT~~Ds~s~~A~l~V~----g 613 (1051)
T KOG3513|consen 549 TFTWKKNGRPIDFNPD--------GDHFEINDGSDSGRLTI-ANVSLEDSG--KYTCVAQTALDSASARADLLVR----G 613 (1051)
T ss_pred EEEEEECCEEhhccCC--------CCceEEeCCcCccceEE-EeeccccCc--eEEEEEEEeecchhcccceEEe----c
Confidence 222 2222333222 2233444433 666 333443333 33333333221 33444332 2
Q ss_pred ccccceeeeE-EEeccceEEEEeeccCCCCCCCc-eeEEEEEEEcCCCCcccccCCCccCCCCcEEEecCCC-C---ceE
Q psy2190 526 FICGFSNLAL-VVLNKTDVSIRFQLNENEKVPDN-QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSK-N---KTV 599 (976)
Q Consensus 526 ~~C~~~~L~v-~vs~~si~~LsW~~~p~~~~~d~-~gY~v~y~~~~~~n~t~~~~~~~c~~~~W~~~~v~~~-~---~~~ 599 (976)
++-.+..|.+ .++.+++. |+|. +...+..+ ..|.|+++.. -...|+.+...+. . .+.
T Consensus 614 pPgpP~~v~~~~i~~t~~~-lsW~--~g~dn~SpI~~Y~iq~rt~--------------~~~~W~~v~~vp~~~~~~~sa 676 (1051)
T KOG3513|consen 614 PPGPPPDVHVDDISDTTAR-LSWS--PGSDNNSPIEKYTIQFRTP--------------FPGKWKAVTTVPGNITGDESA 676 (1051)
T ss_pred CCCCCCceeEeeeccceEE-EEee--cCCCCCCCceEEeEEecCC--------------CCCcceEeeECCCcccCccce
Confidence 2233347888 89999999 9999 44221122 8899998754 2467988663322 2 257
Q ss_pred EeeCCccCceEEEEEEEEeC-CCCCCCC-eEEEecCCCCC-CCCceeEEEEecCcEEEEEecCCC--CCCCceeEEEEEE
Q psy2190 600 EVMNLEPATEYAFFVKIYNS-QRIVRSN-ISLQTTLPTKP-SIPYQFEVVRVNSSSVTLRWGEPK--HPHGILEKYVIKA 674 (976)
Q Consensus 600 ~l~~L~P~T~Y~~~V~a~n~-g~g~~S~-~~~~~T~~~~P-s~P~~l~~~~~s~tsi~vsW~pP~--~~nG~I~~Y~V~~ 674 (976)
++-+|.||++|+|||.|.|. |.|.+|. ....+|.+++| ..|.+|.......+.|+|+|+|.. ..||.-.+|+|
T Consensus 677 ~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~V-- 754 (1051)
T KOG3513|consen 677 TVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRV-- 754 (1051)
T ss_pred eEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEE--
Confidence 79999999999999999999 7776666 45789999999 899999999999999999999855 78999999999
Q ss_pred EEecCcCc-cccccccccccccCCCCCcchhccccccccccCCCCcccCCCCCCCCCccchhhhcccchhccccccceEE
Q psy2190 675 YYQDYDKD-YLDTRNYCVDKLRDLSDSTYAASHLMRFAKTTRKPLKECCGKFPCDFDHESFQYMTSQMQLIQQCDNYIFK 753 (976)
Q Consensus 675 ~~~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~~fe~~~~~~v~~ 753 (976)
.|+..+.. .|..... .+
T Consensus 755 swr~~g~~~~W~~~~v----------------------------------------------------------~~---- 772 (1051)
T KOG3513|consen 755 SWRPQGADKEWKEVIV----------------------------------------------------------SN---- 772 (1051)
T ss_pred EEEeCCCCcccceeEe----------------------------------------------------------cc----
Confidence 99543322 3221100 00
Q ss_pred ecccCCcccccCCCCCCCCcccCCCCCCCcceeeecccE--EEEcCCccccEEEEEEEEEecCccCCCCCCCCCCCCCCc
Q psy2190 754 YLQYNDLHKAYGGDLPSLGNISSRLPDREENDVLYPETS--YTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSE 831 (976)
Q Consensus 754 ~~~~~~~~~r~v~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~l~gL~p~T~Y~~~V~A~~~~~~~~~~~~~~~~~g~s~ 831 (976)
..+.. +..+..+||+.|.+.|+|.|.. |.|+
T Consensus 773 ----------------------------------~d~~~~V~~~~st~~~tpyevKVqa~N~~-------------GeGp 805 (1051)
T KOG3513|consen 773 ----------------------------------QDQPRYVVSNESTEPFTPYEVKVQAINDQ-------------GEGP 805 (1051)
T ss_pred ----------------------------------cCCceEEEcCCCCCCcceeEEEEEEecCC-------------CCCC
Confidence 00111 2234567899999999999998 4444
Q ss_pred -cceeEEecccCCCCCCCCCCeeEEEecCCcEEEEEecCCCCCCCceEEEEEEEEEcCCCCcceeeeeeccccCCCcEEE
Q psy2190 832 -ETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYL 910 (976)
Q Consensus 832 -~~~~~~~T~~~~~~~~~p~~v~~~~~~~~~sv~l~W~~P~~~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l 910 (976)
+..+...+.++. |...|..+.+...++ +.+.|+|++|...||.+++|+|+|...+..... +.......+.++..|
T Consensus 806 ~s~~~v~~S~Ed~-P~~ap~~~~~~~~s~-s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~~~--~~~~~i~~~~~~~~l 881 (1051)
T KOG3513|consen 806 ESQVTVGYSGEDE-PPVAPTKLSAKPLSS-SEVNLSWKPPLWDNGKLTGYEVKYWKINEKEGS--LSRVQIAGNRTSWRL 881 (1051)
T ss_pred CCceEEEEcCCCC-CCCCCccceeecccC-ceEEEEecCcCccCCccceeEEEEEEcCCCccc--ccceeecCCcceEee
Confidence 555556665554 667788888888888 999999999999999999999999998765321 111112245668999
Q ss_pred eecCC-ceEEEEEEEEeCCCCCCCCCcEeEEEecCC
Q psy2190 911 YDYPA-GSYLFRLRVVSLGGEGPWTSWKPCVIESAE 945 (976)
Q Consensus 911 ~~L~p-g~Y~~~V~A~t~aG~G~~S~~~~~~~~~~~ 945 (976)
+||+| +.|.|.|+|+|.||.||.|.....++...+
T Consensus 882 tgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~p 917 (1051)
T KOG3513|consen 882 TGLEPNTKYRFYVRAYTSAGGGPASSEENVTTKKAP 917 (1051)
T ss_pred eCCCCCceEEEEEEEecCCCCCCCccceeccccCCC
Confidence 99999 599999999999999999999888776653
No 7
>KOG4221|consensus
Probab=99.94 E-value=1.3e-25 Score=264.42 Aligned_cols=282 Identities=20% Similarity=0.325 Sum_probs=218.5
Q ss_pred cccccceeeeE-EEeccceEEEEeeccCCCCCCCceeEEEEEEEcCCCCcccccCCCccCCCCcE-EEecCCCCceEEee
Q psy2190 525 EFICGFSNLAL-VVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWK-FKDINSKNKTVEVM 602 (976)
Q Consensus 525 ~~~C~~~~L~v-~vs~~si~~LsW~~~p~~~~~d~~gY~v~y~~~~~~n~t~~~~~~~c~~~~W~-~~~v~~~~~~~~l~ 602 (976)
..+-.++.|.+ -+....|. ++|.+ |.....+...|.++|+.. .+.|. .+.+..+....++.
T Consensus 426 ~~~sap~~lv~~~~~srfi~-~tw~~-p~~~~g~i~~~~v~~~~~---------------~~~rer~~~tss~g~~~tv~ 488 (1381)
T KOG4221|consen 426 LLPSAPRDLVANLVSSRFIQ-LTWRP-PAQISGNISTYTVFYKVE---------------GDVRERLQNTSSPGIQVTVQ 488 (1381)
T ss_pred ccccCCcceecccccceeEE-EeecC-ccccCCCcceEEEEEecC---------------CchhhhheeccCCceEEEee
Confidence 33445555655 56667777 99994 444323338899999864 12232 23343335778999
Q ss_pred CCccCceEEEEEEEEeC-CCCCCCCeEEEecCCCCCCCCceeEEEEecCcEEEEEecCCCCCCCceeEEEEEEEEecCcC
Q psy2190 603 NLEPATEYAFFVKIYNS-QRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDK 681 (976)
Q Consensus 603 ~L~P~T~Y~~~V~a~n~-g~g~~S~~~~~~T~~~~Ps~P~~l~~~~~s~tsi~vsW~pP~~~nG~I~~Y~V~~~~~~~~~ 681 (976)
+|.|.|.|.|+|+|.|. |.|..|..+.++|.+.. +++ +.+.+.++.++.|.|+||..+||.|++|++ .|...+.
T Consensus 489 nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEg--p~~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~--~ys~~~~ 563 (1381)
T KOG4221|consen 489 NLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEG--PVQ-LQAYATSPTTILVTWEPPPFGNGPITGYKL--FYSEDDT 563 (1381)
T ss_pred ecccceeEEEEEeccCcccCCccCCceEEecCCCC--Ccc-ccccccCcceEEEEecCCCCCCCCceEEEE--EEEcCCC
Confidence 99999999999999999 99999999999998873 333 889999999999999999999999999999 7733211
Q ss_pred ccccccccccccccCCCCCcchhccccccccccCCCCcccCCCCCCCCCccchhhhcccchhccccccceEEecccCCcc
Q psy2190 682 DYLDTRNYCVDKLRDLSDSTYAASHLMRFAKTTRKPLKECCGKFPCDFDHESFQYMTSQMQLIQQCDNYIFKYLQYNDLH 761 (976)
Q Consensus 682 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~~fe~~~~~~v~~~~~~~~~~ 761 (976)
.
T Consensus 564 ~------------------------------------------------------------------------------- 564 (1381)
T KOG4221|consen 564 G------------------------------------------------------------------------------- 564 (1381)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred cccCCCCCCCCcccCCCCCCCcceeeecccEEEEcCCccccEEEEEEEEEecCccCCCCCCCCCCCCCCc-cceeEEecc
Q psy2190 762 KAYGGDLPSLGNISSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSE-ETLVMSRTE 840 (976)
Q Consensus 762 ~r~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~gL~p~T~Y~~~V~A~~~~~~~~~~~~~~~~~g~s~-~~~~~~~T~ 840 (976)
....++.+..+++|.||+|+|+|.|+|.|.|.. |.|. ++.+.++|.
T Consensus 565 --------------------~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~-------------G~g~sS~~i~V~Tl 611 (1381)
T KOG4221|consen 565 --------------------KELRVENNATEYTINGLEKYTEYSIRVVAYNSA-------------GSGVSSADITVRTL 611 (1381)
T ss_pred --------------------ceEEEecCccEEEeecCCCccceEEEEEEecCC-------------CCCCCCCceEEEec
Confidence 011223357789999999999999999999998 5565 667788898
Q ss_pred cCCCCCCCCCCeeEEEecCCcEEEEEecCCCC--CCCceEEEEEEEEEcCCCCcceeeeeeccccCCCcEEEeecCCc-e
Q psy2190 841 VDHLADTIPADSLNFEMINASALRIRWHPPSR--PNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAG-S 917 (976)
Q Consensus 841 ~~~~~~~~p~~v~~~~~~~~~sv~l~W~~P~~--~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~pg-~ 917 (976)
... |+.+|.++.++..++ ++|+|+|.+|.. .||.|++|.|+|+.........+.+.. .....+.+.+|+|+ .
T Consensus 612 sd~-PsaPP~Nl~lev~sS-tsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~---~n~~~~l~~~Lep~T~ 686 (1381)
T KOG4221|consen 612 SDV-PSAPPQNLSLEVVSS-TSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVK---GNTTQYLFNGLEPNTQ 686 (1381)
T ss_pred cCC-CCCCCcceEEEecCC-CeEEEEccCCCcccccceEEEEEEEecccCcccccceeecc---cchhhhHhhcCCCCce
Confidence 654 778888899999988 999999999976 899999999999976543233222222 13347888999995 9
Q ss_pred EEEEEEEEeCCCCCCCCCcEeEEEecCC
Q psy2190 918 YLFRLRVVSLGGEGPWTSWKPCVIESAE 945 (976)
Q Consensus 918 Y~~~V~A~t~aG~G~~S~~~~~~~~~~~ 945 (976)
|.|||.|.|..|.|++|+++.+.|+..+
T Consensus 687 Y~vrIsa~t~nGtGpaS~w~~aeT~~~d 714 (1381)
T KOG4221|consen 687 YRVRISAMTVNGTGPASEWVSAETPESD 714 (1381)
T ss_pred EEEEEEEeccCCCCCcccceeccCcccc
Confidence 9999999999999999999999998764
No 8
>PF00757 Furin-like: Furin-like cysteine rich region; InterPro: IPR006211 The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0016020 membrane; PDB: 3U2P_A 2AHX_B 1N8Y_C 1IGR_A 1S78_A 3MZW_A 2A91_A 1N8Z_C 3N85_A 3H3B_B ....
Probab=99.88 E-value=2.2e-23 Score=201.45 Aligned_cols=131 Identities=41% Similarity=0.979 Sum_probs=96.3
Q ss_pred ccccCCCCCCCCC---CCCCCCCCCCCCccc--ccCCC---------Cc-ccccccCccCCCCCCccccccceeecCccc
Q psy2190 199 EACLQEGEPGARS---GPEKCEFYWSNNDCQ--LIKEI---------EE-CHPLCAGGCTGKRAEDCFVCIGFIHDGHCL 263 (976)
Q Consensus 199 ~~C~~~~C~~~~~---~~~~~~~Cw~~~~Cq--~~C~~---------~~-C~~~C~~~C~g~~~~~C~~C~~~~~~~~Cv 263 (976)
++|.+. |+..+. ......+||++++|| ++|+. ++ ||++||+||+||++++|+||++|.++|.||
T Consensus 2 ~~c~~~-c~~~~~~c~~~~~~~~CW~~~~CQ~~~~C~~~c~~~C~~~~~CCh~eClGGC~gp~~~~C~aCr~~~~~g~Cv 80 (149)
T PF00757_consen 2 EECGDV-CPGSCPSCHKCCNSGYCWGPNHCQKRKICPEQCGGRCDNPGDCCHEECLGGCSGPNPSDCYACRHFSYNGTCV 80 (149)
T ss_dssp CCH-----SSTTTTS-TTSTCSEBSSSSGB--STTSSTTGSSSBSSCGGB--TTEESEESSSSTTSESCESSEEETTEEE
T ss_pred Cccccc-CCCcCCCCCCCCCCCcCCCCccccCCccCchhhccccCCcccchhHHHhhcCCCCCCCcCHHHhCcCcCCeec
Confidence 356555 665433 222457899999999 88885 55 999999999999999999999999999999
Q ss_pred ccccccccCCccceeeeecCceeeeccCccccccccccCCCCCccccCCCCCCcccCCCCcccccCCcccccCCCCcccC
Q psy2190 264 DQCPPNLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNTT 343 (976)
Q Consensus 264 ~~Cp~~~~~~~~~~~~~~~~~~~y~~~~~~C~~~~~C~~~~~~~tC~gp~~~~~~C~~c~~~~~~~~~Cv~~Cp~g~~~~ 343 (976)
++||+++ |.| +++||+.++|++|.. .. .-.+|+++++.||.+||.||+.+
T Consensus 81 ~~CP~~~----------------Y~~-~~rCVt~~~C~~~~~------~~-------~~~~~~~~~~~Cv~~CP~gy~~~ 130 (149)
T PF00757_consen 81 EQCPPGK----------------YEF-GRRCVTKEECPSMCE------SS-------KEYPFLIFNGSCVRECPSGYMEV 130 (149)
T ss_dssp SS-STT-----------------EEE-TTEEE-HSSHHCCTT------TT-------STTSEEEETTEEESS-TTTEEEE
T ss_pred ccCChhh----------------ccc-ccEeeccccCCchhh------cc-------cccceeeeCCcccccCCCCCEEC
Confidence 9999999 999 779999889986521 11 11368889999999999999875
Q ss_pred -CCCCCcccCC-CCCCCCC
Q psy2190 344 -ADETSCVPCP-DCPKVCK 360 (976)
Q Consensus 344 -~~~~~C~~C~-~C~~~C~ 360 (976)
+.++.|+||. .|+|+|+
T Consensus 131 ~~~~~~C~~C~g~Cpk~C~ 149 (149)
T PF00757_consen 131 ENNTRECVPCDGPCPKVCK 149 (149)
T ss_dssp ETTCEEEEE-SSS-S-EEE
T ss_pred CCCCceEeeCCCCCcCccC
Confidence 6889999999 9999884
No 9
>KOG3513|consensus
Probab=99.84 E-value=6.7e-19 Score=210.27 Aligned_cols=369 Identities=17% Similarity=0.116 Sum_probs=241.0
Q ss_pred ccce--ecceeeeeeCCcccCCccCceEEEEEe-CCCcccccCcCCCCCCCCCceeEecceEEEecCcccchhhhcccee
Q psy2190 429 SLQS--IHGEREIIRGDTSESSVYSNYSLIVWD-NPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYELIN 505 (976)
Q Consensus 429 nL~~--I~g~~~~~~~~~~~~~~~~~~~l~i~~-n~~L~~l~~~~~~~~~~~~~~~i~~g~v~~~~N~~Lc~~~~~~~~~ 505 (976)
.|+. |.-.+.+|+|+.-+++.. ...-|+++ ..+.-.-|. .....--+..|+ +-...-.|-|-.-|.|+.
T Consensus 620 ~v~~~~i~~t~~~lsW~~g~dn~S-pI~~Y~iq~rt~~~~~W~------~v~~vp~~~~~~-~sa~vv~L~Pwv~YeFRV 691 (1051)
T KOG3513|consen 620 DVHVDDISDTTARLSWSPGSDNNS-PIEKYTIQFRTPFPGKWK------AVTTVPGNITGD-ESATVVNLSPWVEYEFRV 691 (1051)
T ss_pred ceeEeeeccceEEEEeecCCCCCC-CceEEeEEecCCCCCcce------EeeECCCcccCc-cceeEEccCCCcceEEEE
Confidence 4555 556678889987655332 23333332 223222332 112122223333 112233566666777777
Q ss_pred ccccc-cC---CccccccccCCCcccccceeeeE-EEeccceEEEEeeccCCCCC---CCceeEEEEEEEcCCCCccccc
Q psy2190 506 VTNIT-YD---SDFDVLKESNGDEFICGFSNLAL-VVLNKTDVSIRFQLNENEKV---PDNQRYVLFYMKADNGMYTDFD 577 (976)
Q Consensus 506 ~~~~~-~~---~~~~v~~~sNg~~~~C~~~~L~v-~vs~~si~~LsW~~~p~~~~---~d~~gY~v~y~~~~~~n~t~~~ 577 (976)
++-.. ++ ........|....+.-.+.++.. .-..+.++ |+|+ |..+- ++..+|+|.|+..
T Consensus 692 ~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLv-ItW~--Pl~~~~qNG~gfgY~Vswr~~--------- 759 (1051)
T KOG3513|consen 692 VAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELV-ITWE--PLPEEEQNGPGFGYRVSWRPQ--------- 759 (1051)
T ss_pred EEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEE-EEec--cCCHHHccCCCceEEEEEEeC---------
Confidence 65322 21 22233446777777788888888 66778888 9999 54331 2229999999987
Q ss_pred CCCccCCC-CcEEEecCCC-CceEEe--eCCccCceEEEEEEEEeC-CCCCCCCeEEEecCCCCC-CCCceeEEEEecCc
Q psy2190 578 TVGSCSAS-GWKFKDINSK-NKTVEV--MNLEPATEYAFFVKIYNS-QRIVRSNISLQTTLPTKP-SIPYQFEVVRVNSS 651 (976)
Q Consensus 578 ~~~~c~~~-~W~~~~v~~~-~~~~~l--~~L~P~T~Y~~~V~a~n~-g~g~~S~~~~~~T~~~~P-s~P~~l~~~~~s~t 651 (976)
+.. .|+...+... ...+++ .--.|+|.|.+.|+|+|. |.|+.|.++.+.+.++.| .+|+.+.+...+++
T Consensus 760 -----g~~~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s 834 (1051)
T KOG3513|consen 760 -----GADKEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSS 834 (1051)
T ss_pred -----CCCcccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCc
Confidence 334 8988776643 244444 346789999999999999 999999999999999988 89999999999999
Q ss_pred EEEEEecCCCCCCCceeEEEEEEEE-ecCcCccccccccccccccCCCCCcchhccccccccccCCCCcccCCCCCCCCC
Q psy2190 652 SVTLRWGEPKHPHGILEKYVIKAYY-QDYDKDYLDTRNYCVDKLRDLSDSTYAASHLMRFAKTTRKPLKECCGKFPCDFD 730 (976)
Q Consensus 652 si~vsW~pP~~~nG~I~~Y~V~~~~-~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~ 730 (976)
.+.|+|++|...||.+++|+| .| ...+...
T Consensus 835 ~~~v~W~~~~~~nG~l~gY~v--~Y~~~~~~~~----------------------------------------------- 865 (1051)
T KOG3513|consen 835 EVNLSWKPPLWDNGKLTGYEV--KYWKINEKEG----------------------------------------------- 865 (1051)
T ss_pred eEEEEecCcCccCCccceeEE--EEEEcCCCcc-----------------------------------------------
Confidence 999999999999999999999 77 3221100
Q ss_pred ccchhhhcccchhccccccceEEecccCCcccccCCCCCCCCcccCCCCCCCcceeeecccEEEEcCCccccEEEEEEEE
Q psy2190 731 HESFQYMTSQMQLIQQCDNYIFKYLQYNDLHKAYGGDLPSLGNISSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISA 810 (976)
Q Consensus 731 ~~~~~~~~~~~~fe~~~~~~v~~~~~~~~~~~r~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~gL~p~T~Y~~~V~A 810 (976)
......+.++.++..|+||+|.|.|.|.|+|
T Consensus 866 -------------------------------------------------~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA 896 (1051)
T KOG3513|consen 866 -------------------------------------------------SLSRVQIAGNRTSWRLTGLEPNTKYRFYVRA 896 (1051)
T ss_pred -------------------------------------------------cccceeecCCcceEeeeCCCCCceEEEEEEE
Confidence 0001122346778999999999999999999
Q ss_pred EecCccCCCCCCCCCCCCCCccc-eeEEecccCCCCCC----CCCCeeEEEecCCcEEEEEecCCCC--CCCceEEEEEE
Q psy2190 811 CRKEQKDKFLPYDPEEGRCSEET-LVMSRTEVDHLADT----IPADSLNFEMINASALRIRWHPPSR--PNGIIVAYNIE 883 (976)
Q Consensus 811 ~~~~~~~~~~~~~~~~~g~s~~~-~~~~~T~~~~~~~~----~p~~v~~~~~~~~~sv~l~W~~P~~--~NG~I~~Y~I~ 883 (976)
+|.+ |+|+.+ .....|. ...|.. +|+.++... .. ..+.|.|..... ....+.+|.|.
T Consensus 897 ~nsa-------------G~Gp~s~~~~~tt~-k~pPs~~~~~p~g~~~~~~-~~-~~~~l~w~~v~~~~nes~v~gYkV~ 960 (1051)
T KOG3513|consen 897 YTSA-------------GGGPASSEENVTTK-KAPPSQVDIAPPGNFIWKF-SA-SILLLLWLLVSAFENESEVGGYKVL 960 (1051)
T ss_pred ecCC-------------CCCCCccceecccc-CCCCcccccCCCcceEEee-ee-eEEEEEEeeEEEEeecccCcceEEE
Confidence 9999 556533 3334333 332333 555555544 44 689999986432 33458999999
Q ss_pred EEEcCCCCcceeeeeeccccCCCcEEEeecCCceEEEEEEEEeCCCCCCCCCcEeEE
Q psy2190 884 YKRESGGNSENMCRTRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCV 940 (976)
Q Consensus 884 y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~pg~Y~~~V~A~t~aG~G~~S~~~~~~ 940 (976)
|+...+...... .+..... ..-....+ ++.|.++|++++..|.|..++.....
T Consensus 961 ~~~~~~~~~~~~-~t~~~~~--~~~~p~~~-~~~y~i~v~~~~~ggdg~~s~~~~~~ 1013 (1051)
T KOG3513|consen 961 YREDLQNDIEII-LTMKLDA--EFPEPSDL-DGKYDIKVRGYSPGGDGTISEEISID 1013 (1051)
T ss_pred EeecccCCceeE-ecccccc--cccCcccc-CCcceeEeccccCCCCCCcCCccccc
Confidence 998775422111 1111100 01122344 48999999999999999877776543
No 10
>KOG0196|consensus
Probab=99.83 E-value=2.1e-19 Score=204.92 Aligned_cols=141 Identities=17% Similarity=0.274 Sum_probs=106.3
Q ss_pred cccEEEEcCCccccEEEEEEEEEecCccCCCCCCCCCCCCCCccceeEEecccCCCCCCCCCCeeEEEecCCcEEEEEec
Q psy2190 789 PETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWH 868 (976)
Q Consensus 789 ~~~~~~l~gL~p~T~Y~~~V~A~~~~~~~~~~~~~~~~~g~s~~~~~~~~T~~~~~~~~~p~~v~~~~~~~~~sv~l~W~ 868 (976)
.++++++.+|+|.+.|+|.|.|.|... +........+.+.++|...+ |+. -..++....+. +++.|+|.
T Consensus 396 t~~~V~v~~L~ah~~YTFeV~AvNgVS--------~lsp~~~~~a~vnItt~qa~-ps~-V~~~r~~~~~~-~sitlsW~ 464 (996)
T KOG0196|consen 396 TETSVTVSDLLAHTNYTFEVEAVNGVS--------DLSPFPRQFASVNITTNQAA-PSP-VSVLRQVSRTS-DSITLSWS 464 (996)
T ss_pred ccceEEEeccccccccEEEEEEeeccc--------ccCCCCCcceeEEeeccccC-CCc-cceEEEeeecc-CceEEecC
Confidence 466799999999999999999999871 22222222455566665432 322 22456666666 89999999
Q ss_pred CCCCCCCceEEEEEEEEEcCCCCcceeeeeeccccCCCcEEEeecCCc-eEEEEEEEEeCCCCCCCCCcEeEEEecC
Q psy2190 869 PPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAG-SYLFRLRVVSLGGEGPWTSWKPCVIESA 944 (976)
Q Consensus 869 ~P~~~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~pg-~Y~~~V~A~t~aG~G~~S~~~~~~~~~~ 944 (976)
.|..+||.|+.|+|+|...+..+.....+. ...+.++|.+|+|+ .|.|+|||.|.+|.|++|....|.+..+
T Consensus 465 ~p~~png~ildYEvky~ek~~~e~~~~~~~----t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 465 EPDQPNGVILDYEVKYYEKDEDERSYSTLK----TKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred CCCCCCCcceeEEEEEeeccccccceeEEe----cccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 999999999999999998875322221121 23457999999996 9999999999999999999999999886
No 11
>PF14843 GF_recep_IV: Growth factor receptor domain IV; PDB: 1N8Z_C 1S78_A 3N85_A 2A91_A 3MZW_A 3BE1_A 3U2P_A 2AHX_B 3LTF_A 3I2T_A ....
Probab=99.78 E-value=2e-19 Score=171.71 Aligned_cols=114 Identities=31% Similarity=0.726 Sum_probs=87.4
Q ss_pred cccccc-CccCCCCCCccccccceeecCcccccccccccCCccceeeeecCceeeeccCccccc-cccccCCCCCccccC
Q psy2190 234 CHPLCA-GGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLT-REECLNNKRVTTKNF 311 (976)
Q Consensus 234 C~~~C~-~~C~g~~~~~C~~C~~~~~~~~Cv~~Cp~~~~~~~~~~~~~~~~~~~y~~~~~~C~~-~~~C~~~~~~~tC~g 311 (976)
||++|. .|||||++++|++|++|.++++||+.||.+.+.+ ..|.. .+.|.. |++|.......+|+|
T Consensus 2 C~~~C~~~gC~Gp~~~~C~sC~~~~~~g~Cv~~C~~~~~~~-----------~~~~~-~~~C~~Ch~~C~~~~~~~~C~G 69 (132)
T PF14843_consen 2 CHPQCASDGCWGPGPDQCLSCRNFSFNGTCVASCPDGYYFD-----------GSYED-SNTCQPCHPECLPSNGSETCTG 69 (132)
T ss_dssp -CTTBGTT-BSSSSTTCBSSBSSEEETTEEESSTSSSSSSS-----------SEEEE-TTEEEE--TTB---TTSSSBSS
T ss_pred cccccCCCCccCcChhhccCccCcccCCcchhhcccccccc-----------ccccc-CCcCcccChhhCccccCcCcCC
Confidence 899996 7999999999999999999999999999874111 11444 569999 999954444459999
Q ss_pred CCCCCcccCCCCcccccCCcccccCCCCc--------ccCCCCCCcccCC-CCCCCCCcc
Q psy2190 312 PQNMRMSYSDKAKWRPFNGSCMEECPPGY--------NTTADETSCVPCP-DCPKVCKGV 362 (976)
Q Consensus 312 p~~~~~~C~~c~~~~~~~~~Cv~~Cp~g~--------~~~~~~~~C~~C~-~C~~~C~g~ 362 (976)
|++++ |++|++|+ +++.||+.||.|+ +..+..+.|++|| .|..+|+|+
T Consensus 70 p~~~~--C~~C~~~~-~~~~Cv~~CP~~~~~~~~~~~~~~~~~~~C~~Ch~~C~~gC~Gp 126 (132)
T PF14843_consen 70 PGADQ--CLSCAHFR-DGGQCVSSCPEGTYGENFPIYYYPDSNGVCQPCHPSCTQGCTGP 126 (132)
T ss_dssp SSTTT--BSSBSSEE-ETTEEESS--EEEEBTTSEEEEEE-TTSBEEE-STTSTT-BSSS
T ss_pred CCcch--hhhccccC-CCCcccCcCCCCCccccccceecCCCCCccCCcCccccCcCCCC
Confidence 99999 99999986 8999999999995 3345688999999 999999998
No 12
>PF01030 Recep_L_domain: Receptor L domain; InterPro: IPR000494 The type-1 insulin-like growth-factor receptor (IGF-1R) and insulin receptor (IR) are closely related members of the tyrosine-kinase receptor superfamily IPR000719 from INTERPRO. IR is essential for glucose homeostasis, whereas IGF-1R is involved in both normal growth and development and malignant transformation. Homologues of these receptors are found in animals as simple as cnidarians. The epidermal growth-factor receptor (EGFR) family is closely related to the IR family and has significant sequence identity to the first three domains of the extracellular portion of IGF-IR (L1-Cys-rich-L2). The L domains each consist of a single-stranded right-handed beta-helix. The Cys-rich region is composed of eight disulphide-bonded modules, seven of which form a rod-shaped domain with modules associated in an unusual manner. The three domains surround a central space of sufficient size to accommodate a ligand molecule. Although the fragment (residues 1-462) does not bind ligand, many of the determinants responsible for hormone binding and ligand specificity map to this central site. This structure therefore shows how the IR subfamily might interact with their ligands[]. A number of receptor systems have been implicated to play an important role in the development and progression of many human cancers. The epidermal growth factor (EGF) receptor tyrosine kinase family has been found to consistently play a leading role in tumor progression [].; GO: 0016020 membrane; PDB: 1IGR_A 1N8Y_C 3U2P_A 2AHX_A 1IVO_B 3NJP_B 1NQL_A 3QWQ_A 1MOX_A 1YY9_A ....
Probab=99.68 E-value=2.8e-17 Score=154.08 Aligned_cols=110 Identities=35% Similarity=0.484 Sum_probs=85.8
Q ss_pred CCeEEcCceEEEEecCCCchhHHHHHHhhccceeeeeEEEEEeecCccccccccccceecceeeeeeCCcccCCccCceE
Q psy2190 375 GCTVINGSLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHGEREIIRGDTSESSVYSNYS 454 (976)
Q Consensus 375 ~C~~i~G~l~i~~~~g~~~~~~~~l~~~l~~i~~I~G~L~i~~s~~l~~l~fl~nL~~I~g~~~~~~~~~~~~~~~~~~~ 454 (976)
||++|.|+|.|....+... .+++.+|++|++|+|+|.|+++ ++++|+||+||++|+|+.+ ....++
T Consensus 1 nCt~I~G~L~I~~~~~~~~---~~~~~~l~~i~~I~G~l~I~nt-~l~~l~fl~nL~~I~~~~~----------~~~~~~ 66 (112)
T PF01030_consen 1 NCTVICGNLIINGNSDLNE---EQLLSKLSNIEEITGSLIIENT-NLTNLSFLPNLEYIGGNEL----------YDSKYA 66 (112)
T ss_dssp TESEEESBEEEEHHHHTSB---GGGGGGGCT--EESS-EEEESE-T-SSEGGGTT--EEESSS-----------BTTTEE
T ss_pred CCEEEEeEEEEEecCCCch---HHHHHhhcCceEEEeEEEEEEe-ccccccceeeeeEEEEccc----------cceeEE
Confidence 7999999999985543211 3567899999999999999995 9999999999999999887 666899
Q ss_pred EEEEeCCCcccccCcCCCCCCCCCceeEecceEEEecCcccchhhh-ccceec
Q psy2190 455 LIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKI-YELINV 506 (976)
Q Consensus 455 l~i~~n~~L~~l~~~~~~~~~~~~~~~i~~g~v~~~~N~~Lc~~~~-~~~~~~ 506 (976)
|.|.+|++|+.+|+++ +..|..|.|.|.+||+||+... ..|..+
T Consensus 67 l~I~~N~~L~~l~l~~--------L~~i~~~~v~i~~N~~Lc~~~~~~~w~~~ 111 (112)
T PF01030_consen 67 LNIQNNPNLTSLGLPS--------LKTINNGSVVISNNPNLCYTPSEINWFMI 111 (112)
T ss_dssp EEEES-TT-SBEE-TT--------T-EEESSEEEEESBTTSBSTTTHSHHHHH
T ss_pred EEEEECCCcCEecChh--------hceecCCeEEEeCCchhcCcChhcCHHHc
Confidence 9999999999999986 7888889999999999999987 778653
No 13
>PF01030 Recep_L_domain: Receptor L domain; InterPro: IPR000494 The type-1 insulin-like growth-factor receptor (IGF-1R) and insulin receptor (IR) are closely related members of the tyrosine-kinase receptor superfamily IPR000719 from INTERPRO. IR is essential for glucose homeostasis, whereas IGF-1R is involved in both normal growth and development and malignant transformation. Homologues of these receptors are found in animals as simple as cnidarians. The epidermal growth-factor receptor (EGFR) family is closely related to the IR family and has significant sequence identity to the first three domains of the extracellular portion of IGF-IR (L1-Cys-rich-L2). The L domains each consist of a single-stranded right-handed beta-helix. The Cys-rich region is composed of eight disulphide-bonded modules, seven of which form a rod-shaped domain with modules associated in an unusual manner. The three domains surround a central space of sufficient size to accommodate a ligand molecule. Although the fragment (residues 1-462) does not bind ligand, many of the determinants responsible for hormone binding and ligand specificity map to this central site. This structure therefore shows how the IR subfamily might interact with their ligands[]. A number of receptor systems have been implicated to play an important role in the development and progression of many human cancers. The epidermal growth factor (EGF) receptor tyrosine kinase family has been found to consistently play a leading role in tumor progression [].; GO: 0016020 membrane; PDB: 1IGR_A 1N8Y_C 3U2P_A 2AHX_A 1IVO_B 3NJP_B 1NQL_A 3QWQ_A 1MOX_A 1YY9_A ....
Probab=99.65 E-value=1.1e-16 Score=150.06 Aligned_cols=96 Identities=32% Similarity=0.492 Sum_probs=74.5
Q ss_pred CcEEEeCceEEEEecCCCccCcccCCCCCeEEEccEEEEEeecCCCcccccCCCceEEecccccc-ceEEEEEecCcceE
Q psy2190 81 DCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIW-DYTFSVFSMFNLQE 159 (976)
Q Consensus 81 ~Ct~i~G~l~i~~~~~~~~~~~~~~sf~~i~eItG~l~i~~~~~l~sl~~~f~nL~~I~g~~l~~-~~~l~i~~n~~l~~ 159 (976)
|||+|.|+|.|....+....++. ..|.+|++|+|+|.|.++ ++++|+ ||+||+.|+|+.++. .++|.|.+|++|++
T Consensus 1 nCt~I~G~L~I~~~~~~~~~~~~-~~l~~i~~I~G~l~I~nt-~l~~l~-fl~nL~~I~~~~~~~~~~~l~I~~N~~L~~ 77 (112)
T PF01030_consen 1 NCTVICGNLIINGNSDLNEEQLL-SKLSNIEEITGSLIIENT-NLTNLS-FLPNLEYIGGNELYDSKYALNIQNNPNLTS 77 (112)
T ss_dssp TESEEESBEEEEHHHHTSBGGGG-GGGCT--EESS-EEEESE-T-SSEG-GGTT--EEESSS-BTTTEEEEEES-TT-SB
T ss_pred CCEEEEeEEEEEecCCCchHHHH-HhhcCceEEEeEEEEEEe-cccccc-ceeeeeEEEEccccceeEEEEEEECCCcCE
Confidence 79999999999987653322232 248899999999999999 799998 999999999999877 49999999999999
Q ss_pred ecccccceeeeeeEEEeeCc
Q psy2190 160 IGLHRLTHIMKGTVVILRNP 179 (976)
Q Consensus 160 lgl~~L~~i~~g~v~i~~N~ 179 (976)
||+++|+.|..|.|+|.+||
T Consensus 78 l~l~~L~~i~~~~v~i~~N~ 97 (112)
T PF01030_consen 78 LGLPSLKTINNGSVVISNNP 97 (112)
T ss_dssp EE-TTT-EEESSEEEEESBT
T ss_pred ecChhhceecCCeEEEeCCc
Confidence 99999999999999999999
No 14
>KOG0196|consensus
Probab=99.60 E-value=6.2e-14 Score=160.77 Aligned_cols=135 Identities=23% Similarity=0.312 Sum_probs=104.7
Q ss_pred cceeeeEEEeccceEEEEeeccCCCCCCCc--eeEEEEEEEcCCCCcccccCC-CccCCCCcEEEecCCC----CceEEe
Q psy2190 529 GFSNLALVVLNKTDVSIRFQLNENEKVPDN--QRYVLFYMKADNGMYTDFDTV-GSCSASGWKFKDINSK----NKTVEV 601 (976)
Q Consensus 529 ~~~~L~v~vs~~si~~LsW~~~p~~~~~d~--~gY~v~y~~~~~~n~t~~~~~-~~c~~~~W~~~~v~~~----~~~~~l 601 (976)
.+++|..+++.+++. |.|. ++..++.. +.|.|.+++..... +. ..|+.+ +...... ++++.+
T Consensus 334 aP~nlis~vn~Ts~~-L~W~--~P~d~GGR~Di~y~v~Ck~c~~~~-----~~C~~Cg~~---V~f~P~q~gLt~~~V~v 402 (996)
T KOG0196|consen 334 APRNLISNVNGTSLI-LEWS--PPADTGGREDITYNVICKKCGGGR-----GACEPCGDN---VRFTPRQRGLTETSVTV 402 (996)
T ss_pred ccceeeeecccceEE-EEec--CCcccCCCcceEEEEEeeccCCCC-----CccccCCCC---ceECCCCCCcccceEEE
Confidence 445666689999999 9999 44331222 88999988764221 11 235432 2222221 788999
Q ss_pred eCCccCceEEEEEEEEeC-----CCCCCCCeEEEecCCCCCCCCceeEEEEecCcEEEEEecCCCCCCCceeEEEEEEEE
Q psy2190 602 MNLEPATEYAFFVKIYNS-----QRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYY 676 (976)
Q Consensus 602 ~~L~P~T~Y~~~V~a~n~-----g~g~~S~~~~~~T~~~~Ps~P~~l~~~~~s~tsi~vsW~pP~~~nG~I~~Y~V~~~~ 676 (976)
.+|.|.+.|+|.|.|.|. ........+.++|..++|+++..++....+.++|.|+|..|..+||.|..|+| .|
T Consensus 403 ~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildYEv--ky 480 (996)
T KOG0196|consen 403 SDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYEV--KY 480 (996)
T ss_pred eccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeEEE--EE
Confidence 999999999999999997 22355668899999999999999999999999999999999999999999999 77
No 15
>KOG4222|consensus
Probab=99.54 E-value=3.5e-14 Score=167.99 Aligned_cols=283 Identities=17% Similarity=0.223 Sum_probs=184.9
Q ss_pred EEeccceEEEEeeccCCCCCCCc--eeEEEEEEEcCCCCcccccCCCccCCCCcEEEecCCCCceEEeeCCccCceEEEE
Q psy2190 536 VVLNKTDVSIRFQLNENEKVPDN--QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFF 613 (976)
Q Consensus 536 ~vs~~si~~LsW~~~p~~~~~d~--~gY~v~y~~~~~~n~t~~~~~~~c~~~~W~~~~v~~~~~~~~l~~L~P~T~Y~~~ 613 (976)
.++.+++. |+|+ +..+++.. .+|++.|-... -...|....-....+.+.|.+|+|.+.|.|.
T Consensus 537 ~v~~~~v~-LsW~--~~s~sg~vP~s~yiieafs~~-------------~~etw~~ta~~v~~t~~~I~gL~P~~sylf~ 600 (1281)
T KOG4222|consen 537 NVSRTSVT-LSWQ--PTSPSGAVPASGYIIEAFSPD-------------LGETWQTTAGRVKTTTYAIRGLKPNLSYLFL 600 (1281)
T ss_pred cCCCceEE-eccc--CCCCCCccccchhHHHHhhhh-------------hcccccccccccccceeeecCcCccceeeee
Confidence 77889999 9999 55442222 78988775432 2457877554444788999999999999999
Q ss_pred EEEEeC-CCCCCCCe-EEEecCCCCCCCC-------------cee---EEEEecCcEEEEEecCCCC-CCCceeEEEEEE
Q psy2190 614 VKIYNS-QRIVRSNI-SLQTTLPTKPSIP-------------YQF---EVVRVNSSSVTLRWGEPKH-PHGILEKYVIKA 674 (976)
Q Consensus 614 V~a~n~-g~g~~S~~-~~~~T~~~~Ps~P-------------~~l---~~~~~s~tsi~vsW~pP~~-~nG~I~~Y~V~~ 674 (976)
|+|.|. |-+.+|.. -.++|.++.+..- ..+ ....+++++|.+.|..+.. .-+-|.+|+|
T Consensus 601 vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~~~~i~g~~I-- 678 (1281)
T KOG4222|consen 601 VRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHGSQYIQGYRI-- 678 (1281)
T ss_pred eeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeecccCcccccceEE--
Confidence 999998 43333321 2356666544211 111 2344678999999998764 4467999999
Q ss_pred EEecCcCccccccccccccccCCCCCcchhccccccccccCCCCcccCCCCCCCCCccchhhhcccchhccccccceEEe
Q psy2190 675 YYQDYDKDYLDTRNYCVDKLRDLSDSTYAASHLMRFAKTTRKPLKECCGKFPCDFDHESFQYMTSQMQLIQQCDNYIFKY 754 (976)
Q Consensus 675 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~~fe~~~~~~v~~~ 754 (976)
.||....... ++. ++ .+.
T Consensus 679 ~~r~~~~~~a--------------------------------------------------~~s-------~~---~v~-- 696 (1281)
T KOG4222|consen 679 SYRSLGSQLA--------------------------------------------------QWS-------NA---GVT-- 696 (1281)
T ss_pred EeccCccccc--------------------------------------------------ccc-------cc---cee--
Confidence 8954332100 000 00 000
Q ss_pred cccCCcccccCCCCCCCCcccCCCCCCCcceeeecccEEEEcCCccccEEEEEEEEEecCccCCCCCCCCCCCCCCccce
Q psy2190 755 LQYNDLHKAYGGDLPSLGNISSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETL 834 (976)
Q Consensus 755 ~~~~~~~~r~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~gL~p~T~Y~~~V~A~~~~~~~~~~~~~~~~~g~s~~~~ 834 (976)
.....++++.+|+|+|.|.|.+..+... +.....-++..
T Consensus 697 --------------------------------~~t~~s~v~~nl~p~t~ye~f~~Pf~~~---------~~s~~g~pS~s 735 (1281)
T KOG4222|consen 697 --------------------------------VPTPESVVVPNLKPGTNYEFFVRPFFPH---------GYSIQGAPSNS 735 (1281)
T ss_pred --------------------------------ccCCcceeccccCCCccceeeccCccCC---------CcceecCCccc
Confidence 0124468899999999999999988874 21111123555
Q ss_pred eEEecccCCCCCCCCCCeeEE---EecCCcEEEEEecCCCC--CCCceEEEEEEEEEcCCCCcceeeeeeccccCCCcEE
Q psy2190 835 VMSRTEVDHLADTIPADSLNF---EMINASALRIRWHPPSR--PNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLY 909 (976)
Q Consensus 835 ~~~~T~~~~~~~~~p~~v~~~---~~~~~~sv~l~W~~P~~--~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~ 909 (976)
..+.|...+ |..+|..+... ..+. ++..|+|.+|+. .||.+.+|.|.....+.. ......+ ......+.+
T Consensus 736 k~alt~e~~-PSapp~~~~~~s~~~~n~-Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~t-r~h~n~t--~~a~~~sv~ 810 (1281)
T KOG4222|consen 736 KTALTLEEP-PSAPPQGVQHVSKGSYNG-TAGSVSWAPPPADVQNGILQGYKIECSGGEKT-RIHINKT--TNARTGSVT 810 (1281)
T ss_pred ccccccccC-CCCCCCCccccccccCCC-ceeeEEecCCcccccCCcccceeEEeecCccc-ccccccc--ccCCCCceE
Confidence 666776543 55556664322 2233 799999999865 799999999986544321 1110011 123455899
Q ss_pred EeecCCc-eEEEEEEEEeCCCCCCCCCcEeEEEecC
Q psy2190 910 LYDYPAG-SYLFRLRVVSLGGEGPWTSWKPCVIESA 944 (976)
Q Consensus 910 l~~L~pg-~Y~~~V~A~t~aG~G~~S~~~~~~~~~~ 944 (976)
|.+|.+| .|+|+|+|.|.+|.|+.+++..+.+...
T Consensus 811 i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~~~~~~ 846 (1281)
T KOG4222|consen 811 IGNLVTGIAYSVTVAARTGAGVGVKSPPQPIVFDTH 846 (1281)
T ss_pred eccccccceEEEEEeeecCCccCCCCCCeeeecCCC
Confidence 9999998 9999999999999999999877766543
No 16
>PF14843 GF_recep_IV: Growth factor receptor domain IV; PDB: 1N8Z_C 1S78_A 3N85_A 2A91_A 3MZW_A 3BE1_A 3U2P_A 2AHX_B 3LTF_A 3I2T_A ....
Probab=99.12 E-value=6.5e-11 Score=113.25 Aligned_cols=82 Identities=27% Similarity=0.597 Sum_probs=59.6
Q ss_pred CcccccCCC-------------Cc-cccccc-----CccCCCCCCccccccceeecCcccccccccccCCccceeeeecC
Q psy2190 223 NDCQLIKEI-------------EE-CHPLCA-----GGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILYG 283 (976)
Q Consensus 223 ~~Cq~~C~~-------------~~-C~~~C~-----~~C~g~~~~~C~~C~~~~~~~~Cv~~Cp~~~~~~~~~~~~~~~~ 283 (976)
++|+..|+. ++ ||++|+ .+|+||++++|++|+++++++.||+.||.+++.+....
T Consensus 29 g~Cv~~C~~~~~~~~~~~~~~~C~~Ch~~C~~~~~~~~C~Gp~~~~C~~C~~~~~~~~Cv~~CP~~~~~~~~~~------ 102 (132)
T PF14843_consen 29 GTCVASCPDGYYFDGSYEDSNTCQPCHPECLPSNGSETCTGPGADQCLSCAHFRDGGQCVSSCPEGTYGENFPI------ 102 (132)
T ss_dssp TEEESSTSSSSSSSSEEEETTEEEE--TTB---TTSSSBSSSSTTTBSSBSSEEETTEEESS--EEEEBTTSEE------
T ss_pred CcchhhcccccccccccccCCcCcccChhhCccccCcCcCCCCcchhhhccccCCCCcccCcCCCCCccccccc------
Confidence 567778983 45 999995 99999999999999999999999999999975443311
Q ss_pred ceeeeccCccccc-cccccCCCCCccccCCCCCC
Q psy2190 284 GIRYSYMNRRCLT-REECLNNKRVTTKNFPQNMR 316 (976)
Q Consensus 284 ~~~y~~~~~~C~~-~~~C~~~~~~~tC~gp~~~~ 316 (976)
..|....+.|.. |++|.. .|+||.+.+
T Consensus 103 -~~~~~~~~~C~~Ch~~C~~-----gC~Gp~~~~ 130 (132)
T PF14843_consen 103 -YYYPDSNGVCQPCHPSCTQ-----GCTGPSASD 130 (132)
T ss_dssp -EEEE-TTSBEEE-STTSTT------BSSSSTTC
T ss_pred -eecCCCCCccCCcCccccC-----cCCCCCccc
Confidence 124445679999 999942 899999876
No 17
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.89 E-value=4e-09 Score=93.02 Aligned_cols=81 Identities=26% Similarity=0.547 Sum_probs=65.9
Q ss_pred CCCeeEEEecCCcEEEEEecCCCCCCCceEEEEEEEEEcCCCC-cceeeeeeccccCCCcEEEeecCCc-eEEEEEEEEe
Q psy2190 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGN-SENMCRTRKDIDRDSGLYLYDYPAG-SYLFRLRVVS 926 (976)
Q Consensus 849 p~~v~~~~~~~~~sv~l~W~~P~~~NG~I~~Y~I~y~~~~~~~-~~~~~v~~~~~~~~~~~~l~~L~pg-~Y~~~V~A~t 926 (976)
|.++.+...+. +++.|+|++|...++.+.+|.|+|+...... +....+. .....+.|.+|.|+ .|.|+|+|.+
T Consensus 3 P~~l~v~~~~~-~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~----~~~~~~~i~~L~p~t~Y~~~v~a~~ 77 (85)
T PF00041_consen 3 PENLSVSNISP-TSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVP----GNETSYTITGLQPGTTYEFRVRAVN 77 (85)
T ss_dssp SEEEEEEEECS-SEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEE----TTSSEEEEESCCTTSEEEEEEEEEE
T ss_pred CcCeEEEECCC-CEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeee----eeeeeeeeccCCCCCEEEEEEEEEe
Confidence 67888888877 9999999999888899999999999887653 2222222 23347999999996 9999999999
Q ss_pred CCCCCCCC
Q psy2190 927 LGGEGPWT 934 (976)
Q Consensus 927 ~aG~G~~S 934 (976)
..|.|++|
T Consensus 78 ~~g~g~~S 85 (85)
T PF00041_consen 78 SDGEGPPS 85 (85)
T ss_dssp TTEEEEEE
T ss_pred CCcCcCCC
Confidence 99998765
No 18
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.62 E-value=1.6e-07 Score=82.68 Aligned_cols=39 Identities=28% Similarity=0.589 Sum_probs=35.3
Q ss_pred CCCceeEEEEecCcEEEEEecCCCCCCCceeEEEEEEEEec
Q psy2190 638 SIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQD 678 (976)
Q Consensus 638 s~P~~l~~~~~s~tsi~vsW~pP~~~nG~I~~Y~V~~~~~~ 678 (976)
++|.++++..++.++|.|+|++|...++.+.+|.| .|+.
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v--~~~~ 39 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPSSGNGPITGYRV--EYRS 39 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESSSTSSSESEEEE--EEEE
T ss_pred CcCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEE--EEEe
Confidence 47899999999999999999999888899999999 8843
No 19
>KOG4222|consensus
Probab=98.57 E-value=3.2e-07 Score=110.24 Aligned_cols=123 Identities=24% Similarity=0.379 Sum_probs=94.8
Q ss_pred EEeccceEEEEeeccCCCCCCCc-eeEEEEEEEcCCCCcccccCCCccCCCCcEEEecCCC-CceEEeeCCccCceEEEE
Q psy2190 536 VVLNKTDVSIRFQLNENEKVPDN-QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSK-NKTVEVMNLEPATEYAFF 613 (976)
Q Consensus 536 ~vs~~si~~LsW~~~p~~~~~d~-~gY~v~y~~~~~~n~t~~~~~~~c~~~~W~~~~v~~~-~~~~~l~~L~P~T~Y~~~ 613 (976)
.+.++++. +.|.. +-.+.... .+|.|.||.... ....|....+..+ ..++.+.+|+|+|.|+|.
T Consensus 652 ~L~asslr-~~w~~-~kq~~~~~i~g~~I~~r~~~~------------~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f 717 (1281)
T KOG4222|consen 652 VLNASSLR-LGWTK-DKQHGSQYIQGYRISYRSLGS------------QLAQWSNAGVTVPTPESVVVPNLKPGTNYEFF 717 (1281)
T ss_pred ccchhhee-eeeee-ecccCcccccceEEEeccCcc------------ccccccccceeccCCcceeccccCCCccceee
Confidence 67889999 99983 12210122 899999997742 1245666555544 678899999999999999
Q ss_pred EEEEeC----CCCCCCCeEEEecCCCCC-CCCcee---EEEEecCcEEEEEecCCC--CCCCceeEEEE
Q psy2190 614 VKIYNS----QRIVRSNISLQTTLPTKP-SIPYQF---EVVRVNSSSVTLRWGEPK--HPHGILEKYVI 672 (976)
Q Consensus 614 V~a~n~----g~g~~S~~~~~~T~~~~P-s~P~~l---~~~~~s~tsi~vsW~pP~--~~nG~I~~Y~V 672 (976)
++-+.. ..|..|....+.|.+.+| .+|.++ ..-....+++.|+|.||. ..||.+.+|.|
T Consensus 718 ~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki 786 (1281)
T KOG4222|consen 718 VRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKI 786 (1281)
T ss_pred ccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeE
Confidence 999876 567899999999999999 566774 444456789999999875 68999999999
No 20
>KOG4802|consensus
Probab=98.45 E-value=2.9e-06 Score=91.43 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=68.0
Q ss_pred CCcEEEecCCCCceEEeeCCccCceEEEEEEEEeC----CCCCCCCeEEEecCCCCCCCCceeEEEEecC--c-EEEEEe
Q psy2190 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS----QRIVRSNISLQTTLPTKPSIPYQFEVVRVNS--S-SVTLRW 657 (976)
Q Consensus 585 ~~W~~~~v~~~~~~~~l~~L~P~T~Y~~~V~a~n~----g~g~~S~~~~~~T~~~~Ps~P~~l~~~~~s~--t-si~vsW 657 (976)
..|+.+....++..+.+++++|+..|.|+|.|+|. |.+.+|+.....-.+.+|.+|.++++..+.. . ...|-|
T Consensus 197 thwQtv~~t~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w 276 (516)
T KOG4802|consen 197 THWQTVEKTMEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVW 276 (516)
T ss_pred ccceeeeecCCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEe
Confidence 35666666555567899999999999999999997 6677777777777788889999998776533 2 344555
Q ss_pred cCCCCCCCceeEEEEEEEE
Q psy2190 658 GEPKHPHGILEKYVIKAYY 676 (976)
Q Consensus 658 ~pP~~~nG~I~~Y~V~~~~ 676 (976)
-| ..++=+|.+|+| .|
T Consensus 277 ~P-~~sdlPv~~Yki--~W 292 (516)
T KOG4802|consen 277 CP-SKSDLPVEKYKI--TW 292 (516)
T ss_pred CC-CCCCCcceeeEE--Ee
Confidence 55 445678999999 88
No 21
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.29 E-value=6.5e-06 Score=72.51 Aligned_cols=87 Identities=24% Similarity=0.503 Sum_probs=63.9
Q ss_pred CCCeeEEEecCCcEEEEEecCCCCCCCceEEEEEEEEEcCCCCcceeeeeeccccCCCcEEEeecCCc-eEEEEEEEEeC
Q psy2190 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAG-SYLFRLRVVSL 927 (976)
Q Consensus 849 p~~v~~~~~~~~~sv~l~W~~P~~~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~pg-~Y~~~V~A~t~ 927 (976)
|..+.+..... +++.|+|.+|...++.+..|.|.|.......+... .. .......+.+.+|.|+ .|.|+|+|.+.
T Consensus 4 p~~~~~~~~~~-~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~--~~-~~~~~~~~~i~~l~p~~~Y~~~v~a~~~ 79 (93)
T cd00063 4 PTNLRVTDVTS-TSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEV--EV-TPGSETSYTLTGLKPGTEYEFRVRAVNG 79 (93)
T ss_pred CCCcEEEEecC-CEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEEe--ec-cCCcccEEEEccccCCCEEEEEEEEECC
Confidence 45566666555 79999999998877889999999987653212211 11 0024457899999996 99999999999
Q ss_pred CCCCCCCCcEeE
Q psy2190 928 GGEGPWTSWKPC 939 (976)
Q Consensus 928 aG~G~~S~~~~~ 939 (976)
.|.|+++....|
T Consensus 80 ~~~~~~s~~~~~ 91 (93)
T cd00063 80 GGESPPSESVTV 91 (93)
T ss_pred CccCCCcccccc
Confidence 999988875544
No 22
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.16 E-value=0.00022 Score=76.81 Aligned_cols=124 Identities=15% Similarity=0.243 Sum_probs=74.0
Q ss_pred ccEEEEcCCccccEEEEEEEEEecCccCCCCCCCCCCCCCCccceeE-EecccC-CCCCCCCCCeeEEEec--CC-cEEE
Q psy2190 790 ETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVM-SRTEVD-HLADTIPADSLNFEMI--NA-SALR 864 (976)
Q Consensus 790 ~~~~~l~gL~p~T~Y~~~V~A~~~~~~~~~~~~~~~~~g~s~~~~~~-~~T~~~-~~~~~~p~~v~~~~~~--~~-~sv~ 864 (976)
-..+.+.|+.|+..|.++|.+.+.. .......+. +.|.+. .+-|.+|.+..+...+ .+ +++.
T Consensus 127 ~~~f~l~~~~~g~~Yliri~~~~~~-------------e~~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvT 193 (300)
T PF10179_consen 127 LRHFRLSGVKPGERYLIRIQISNSD-------------EGPSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVT 193 (300)
T ss_pred eEEEEECCCCCCCeEEEEEEccCCC-------------CCceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEE
Confidence 4568999999999999999877754 111222333 233221 2245667776665554 22 7999
Q ss_pred EEecCCCCCCCceEEEEEEEEEcCCC---------------------Ccceeeeeecc-------ccCCCcEEEeecCCc
Q psy2190 865 IRWHPPSRPNGIIVAYNIEYKRESGG---------------------NSENMCRTRKD-------IDRDSGLYLYDYPAG 916 (976)
Q Consensus 865 l~W~~P~~~NG~I~~Y~I~y~~~~~~---------------------~~~~~~v~~~~-------~~~~~~~~l~~L~pg 916 (976)
|.|.+-.+.. ..|=|.-+...+. .+...|.-... .......+|.+|+||
T Consensus 194 IAW~~s~d~~---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG 270 (300)
T PF10179_consen 194 IAWLGSPDRS---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPG 270 (300)
T ss_pred EEEecCCCCC---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCC
Confidence 9999866543 5677765543321 01122321111 011124579999998
Q ss_pred -eEEEEEEEEeCCC
Q psy2190 917 -SYLFRLRVVSLGG 929 (976)
Q Consensus 917 -~Y~~~V~A~t~aG 929 (976)
.|.|.|.|.-..|
T Consensus 271 ~~Yl~dV~~~~~~G 284 (300)
T PF10179_consen 271 TTYLFDVYVNGPSG 284 (300)
T ss_pred cEEEEEEEEecCCC
Confidence 9999999875444
No 23
>KOG4802|consensus
Probab=97.88 E-value=7.3e-05 Score=80.92 Aligned_cols=132 Identities=16% Similarity=0.186 Sum_probs=84.1
Q ss_pred cccEEEEcCCccccEEEEEEEEEecCccCCCCCCCCCCCCCCccceeEEecccCCCCCCCCCCeeEEEecCC--cEEEEE
Q psy2190 789 PETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEVDHLADTIPADSLNFEMINA--SALRIR 866 (976)
Q Consensus 789 ~~~~~~l~gL~p~T~Y~~~V~A~~~~~~~~~~~~~~~~~g~s~~~~~~~~T~~~~~~~~~p~~v~~~~~~~~--~sv~l~ 866 (976)
....+.+..++|+..|.|+|.|+|.. |- .|.+.++.....+ ..+.|+.+|.++.+..+... ....|-
T Consensus 207 ~e~~~~~t~~rPgRwyefrvaavn~~---------G~-rGFs~PSkpf~ss-k~pkaPp~P~dl~l~~v~~dG~~~~~v~ 275 (516)
T KOG4802|consen 207 EENTYIFTDMRPGRWYEFRVAAVNAY---------GF-RGFSEPSKPFPSS-KNPKAPPSPNDLKLIGVQFDGRYMLKVV 275 (516)
T ss_pred CCceeeeeecCcceeEEEEEeeeecc---------cc-cccCCCCCCCCCC-CCCCCCcCcccceeeeeeecceEEEEEE
Confidence 34468899999999999999999987 32 2444433333223 23345555777766655432 345666
Q ss_pred ecCCCCCCCceEEEEEEEEEcCCCCcceeeeeecccc-CCCcEEEeecCCc-eEEEEEEEEeCCCCCCC
Q psy2190 867 WHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDID-RDSGLYLYDYPAG-SYLFRLRVVSLGGEGPW 933 (976)
Q Consensus 867 W~~P~~~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~-~~~~~~l~~L~pg-~Y~~~V~A~t~aG~G~~ 933 (976)
|-| +.++=+|..|+|.|...-.. .....++...+. ....+.|++|.|. .|.|.|+|++.-|.+..
T Consensus 276 w~P-~~sdlPv~~Yki~Ws~~v~s-~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 276 WCP-SKSDLPVEKYKITWSLYVNS-AKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRL 342 (516)
T ss_pred eCC-CCCCCcceeeEEEeehhhhh-hhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence 655 45677899999998754421 111111211111 1123459999996 99999999999998765
No 24
>PF00757 Furin-like: Furin-like cysteine rich region; InterPro: IPR006211 The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0016020 membrane; PDB: 3U2P_A 2AHX_B 1N8Y_C 1IGR_A 1S78_A 3MZW_A 2A91_A 1N8Z_C 3N85_A 3H3B_B ....
Probab=97.82 E-value=1.1e-05 Score=78.62 Aligned_cols=45 Identities=33% Similarity=0.561 Sum_probs=34.7
Q ss_pred ccCCCCceeeeCCeeeccCCCCceecCCCCCCCCCCCCCCCCceecCCCCccccc
Q psy2190 11 ELSDKAKWRPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFDQTKEKVCT 65 (976)
Q Consensus 11 ~~~~~~~~~~~~~~C~~~Cp~~~~~~~~~~~~~~~~~~~~~~c~~c~~~c~k~C~ 65 (976)
.....++|++++|+||++||+||++++. +++.|+||+|+|+|+|.
T Consensus 105 ~~~~~~~~~~~~~~Cv~~CP~gy~~~~~----------~~~~C~~C~g~Cpk~C~ 149 (149)
T PF00757_consen 105 ESSKEYPFLIFNGSCVRECPSGYMEVEN----------NTRECVPCDGPCPKVCK 149 (149)
T ss_dssp TTTSTTSEEEETTEEESS-TTTEEEEET----------TCEEEEE-SSS-S-EEE
T ss_pred hcccccceeeeCCcccccCCCCCEECCC----------CCceEeeCCCCCcCccC
Confidence 4456788999999999999999998742 36899999999999994
No 25
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=97.74 E-value=1.8e-05 Score=61.87 Aligned_cols=36 Identities=36% Similarity=1.005 Sum_probs=33.3
Q ss_pred ccccccCccCCCCCCcccccccee--ecCcccccccccc
Q psy2190 234 CHPLCAGGCTGKRAEDCFVCIGFI--HDGHCLDQCPPNL 270 (976)
Q Consensus 234 C~~~C~~~C~g~~~~~C~~C~~~~--~~~~Cv~~Cp~~~ 270 (976)
||++| .+|+|+++++|.+|+..+ +++.||..||.++
T Consensus 2 C~~~C-~~C~g~~~~~C~~C~~~~~~~~~~Cv~~C~~~~ 39 (49)
T cd00064 2 CHPSC-ATCTGPGPDQCTSCRHGFYLDGGTCVSECPEGT 39 (49)
T ss_pred CCCcc-CCCcCcCcCcCccCcCccCCCCCcccccCCCCc
Confidence 88999 599999999999999866 7999999999998
No 26
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.74 E-value=0.0002 Score=61.00 Aligned_cols=75 Identities=21% Similarity=0.419 Sum_probs=49.6
Q ss_pred CCCeeEEEecCCcEEEEEecCCCCCCCceEEEEEEEEEcCCCC---cceeeeeeccccCCCcEEEeecCCc-eEEEEEEE
Q psy2190 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGN---SENMCRTRKDIDRDSGLYLYDYPAG-SYLFRLRV 924 (976)
Q Consensus 849 p~~v~~~~~~~~~sv~l~W~~P~~~NG~I~~Y~I~y~~~~~~~---~~~~~v~~~~~~~~~~~~l~~L~pg-~Y~~~V~A 924 (976)
|..+.+..... .++.|+|++|...++ .+|.+.|....... +..... ......+.+.+|.|+ .|.|+|+|
T Consensus 4 p~~~~~~~~~~-~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~L~~~~~Y~v~v~a 76 (83)
T smart00060 4 PSNLRVTDVTS-TSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVNV----TPSSTSYTLTGLKPGTEYEFRVRA 76 (83)
T ss_pred CCcEEEEEEeC-CEEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEEe----cCCccEEEEeCcCCCCEEEEEEEE
Confidence 34466666666 699999998866553 66777666543221 111111 111357899999997 99999999
Q ss_pred EeCCCC
Q psy2190 925 VSLGGE 930 (976)
Q Consensus 925 ~t~aG~ 930 (976)
.+..|.
T Consensus 77 ~~~~g~ 82 (83)
T smart00060 77 VNGAGE 82 (83)
T ss_pred EcccCC
Confidence 998664
No 27
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=97.62 E-value=0.00048 Score=60.32 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=57.4
Q ss_pred eeeE-EEeccceEEEEeeccCCCCCC-CceeEEEEEEEcCCCCcccccCCCccCCCCcEEEecC-CCCceEEeeCCccCc
Q psy2190 532 NLAL-VVLNKTDVSIRFQLNENEKVP-DNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDIN-SKNKTVEVMNLEPAT 608 (976)
Q Consensus 532 ~L~v-~vs~~si~~LsW~~~p~~~~~-d~~gY~v~y~~~~~~n~t~~~~~~~c~~~~W~~~~v~-~~~~~~~l~~L~P~T 608 (976)
++.+ .....++. |+|. ++.... ...+|.|+|.... ...|...... .....+.+.+|.|++
T Consensus 6 ~~~~~~~~~~~~~-v~W~--~~~~~~~~~~~y~v~~~~~~--------------~~~~~~~~~~~~~~~~~~i~~l~p~~ 68 (93)
T cd00063 6 NLRVTDVTSTSVT-LSWT--PPEDDGGPITGYVVEYREKG--------------SGDWKEVEVTPGSETSYTLTGLKPGT 68 (93)
T ss_pred CcEEEEecCCEEE-EEEC--CCCCCCCcceeEEEEEeeCC--------------CCCCEEeeccCCcccEEEEccccCCC
Confidence 4555 55578999 9999 443301 2288999998752 2456665553 236789999999999
Q ss_pred eEEEEEEEEeC-CCCCCCCeEEE
Q psy2190 609 EYAFFVKIYNS-QRIVRSNISLQ 630 (976)
Q Consensus 609 ~Y~~~V~a~n~-g~g~~S~~~~~ 630 (976)
.|.|+|+|.+. +.+.++....+
T Consensus 69 ~Y~~~v~a~~~~~~~~~s~~~~~ 91 (93)
T cd00063 69 EYEFRVRAVNGGGESPPSESVTV 91 (93)
T ss_pred EEEEEEEEECCCccCCCcccccc
Confidence 99999999986 55666654443
No 28
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=97.44 E-value=0.00011 Score=57.39 Aligned_cols=45 Identities=22% Similarity=0.470 Sum_probs=36.5
Q ss_pred cccccCCCCCccccCCCCCCcccCCCCc-ccccCCcccccCCCCcccCCCCCCc
Q psy2190 297 REECLNNKRVTTKNFPQNMRMSYSDKAK-WRPFNGSCMEECPPGYNTTADETSC 349 (976)
Q Consensus 297 ~~~C~~~~~~~tC~gp~~~~~~C~~c~~-~~~~~~~Cv~~Cp~g~~~~~~~~~C 349 (976)
|++|. +|+||++.+ |++|.+ |+.+++.||..||.++|.+.....|
T Consensus 3 ~~~C~------~C~g~~~~~--C~~C~~~~~~~~~~Cv~~C~~~~~~~~~~~~C 48 (49)
T cd00064 3 HPSCA------TCTGPGPDQ--CTSCRHGFYLDGGTCVSECPEGTYADTEGGVC 48 (49)
T ss_pred CCccC------CCcCcCcCc--CccCcCccCCCCCcccccCCCCceecCcCCcC
Confidence 34676 899998887 999966 4468899999999999987666665
No 29
>KOG3632|consensus
Probab=97.09 E-value=0.0039 Score=74.46 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=81.2
Q ss_pred EEEEcCCccccEEEEEEEEEecCccCCCCCCCCC-CCCCCccceeEEecccCCCCCCCCCCeeEEEecCCcEEEEEecCC
Q psy2190 792 SYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPE-EGRCSEETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPP 870 (976)
Q Consensus 792 ~~~l~gL~p~T~Y~~~V~A~~~~~~~~~~~~~~~-~~g~s~~~~~~~~T~~~~~~~~~p~~v~~~~~~~~~sv~l~W~~P 870 (976)
.+++-+|+|+|.|.++|-|.-.... .|+-. .......+.+.++|.+.. |+.+|..|.++.......+.++|.||
T Consensus 719 ~ytf~~lrpgt~y~a~vea~~p~q~----pwdl~~v~~etr~atv~f~tLpAG-ppappldV~vE~g~spg~l~vswrPp 793 (1335)
T KOG3632|consen 719 NYTFMRLRPGTDYWASVEAALPRQE----PWDLRMVPMETRQATVLFRTLPAG-PPAPPLDVKVETGGSPGRLEVSWRPP 793 (1335)
T ss_pred HHHHhccCCCCccceecccccCcCC----CcccccchhhhhccceeeecccCC-CCCCchheeeecCCCCceeeeeccCc
Confidence 3678899999999999988776311 22211 112234677888898764 77778888877754447899999999
Q ss_pred CC-----CCC-ceEEEEEEEEEcCCCCcceeeeeeccccCCCcEEEeecCCceE--EEEEEEEeCCCCCCC
Q psy2190 871 SR-----PNG-IIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAGSY--LFRLRVVSLGGEGPW 933 (976)
Q Consensus 871 ~~-----~NG-~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~pg~Y--~~~V~A~t~aG~G~~ 933 (976)
.- .|| .+++|.|+-. +.. ..+.... ....+-+.+.-|.-+.| .|.||..+.-|++--
T Consensus 794 tldsag~sngv~vtgYavyad--gqk--v~Evafp--tagst~VelsQlq~~l~~~~V~vRtms~~gesvd 858 (1335)
T KOG3632|consen 794 TLDSAGCSNGVAVTGYAVYAD--GQK--VEEVAFP--TAGSTKVELSQLQDGLYHGAVGVRTMSVPGESVD 858 (1335)
T ss_pred eeccccccCceeeeeeeeeeC--Cce--eeeeecc--cCCceEEEeeeehhhheecceeEEecccCccccc
Confidence 64 455 4899999843 111 1111100 11222355566666655 566666666675533
No 30
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=96.96 E-value=0.015 Score=62.88 Aligned_cols=74 Identities=22% Similarity=0.345 Sum_probs=52.4
Q ss_pred CceEEeeCCccCceEEEEEEEEeCCCCCCCCeEE-EecCCC---CCCCCceeEEEEec----CcEEEEEecCCCCCCCce
Q psy2190 596 NKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISL-QTTLPT---KPSIPYQFEVVRVN----SSSVTLRWGEPKHPHGIL 667 (976)
Q Consensus 596 ~~~~~l~~L~P~T~Y~~~V~a~n~g~g~~S~~~~-~~T~~~---~Ps~P~~l~~~~~s----~tsi~vsW~pP~~~nG~I 667 (976)
-..+.|.++.|+..|.+++.+.+...++.+--+. ..|.+. -|.-|.+..+...+ =++++|.|.+-.+.+
T Consensus 127 ~~~f~l~~~~~g~~Yliri~~~~~~e~~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~--- 203 (300)
T PF10179_consen 127 LRHFRLSGVKPGERYLIRIQISNSDEGPSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDRS--- 203 (300)
T ss_pred eEEEEECCCCCCCeEEEEEEccCCCCCceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCCC---
Confidence 3568899999999999999887764444444444 455543 45778888776554 389999999855432
Q ss_pred eEEEE
Q psy2190 668 EKYVI 672 (976)
Q Consensus 668 ~~Y~V 672 (976)
..|=|
T Consensus 204 ~kYCv 208 (300)
T PF10179_consen 204 IKYCV 208 (300)
T ss_pred ceEEE
Confidence 56777
No 31
>smart00261 FU Furin-like repeats.
Probab=96.85 E-value=0.00064 Score=52.24 Aligned_cols=36 Identities=42% Similarity=1.111 Sum_probs=31.3
Q ss_pred ccccccCccCCCCCCcccccccee--ecCcccccccccc
Q psy2190 234 CHPLCAGGCTGKRAEDCFVCIGFI--HDGHCLDQCPPNL 270 (976)
Q Consensus 234 C~~~C~~~C~g~~~~~C~~C~~~~--~~~~Cv~~Cp~~~ 270 (976)
||+.| ..|+|+++.+|++|+... .++.||..||.++
T Consensus 7 C~~~C-~~C~~~~~~~C~~C~~~~~l~~~~Cv~~C~~~~ 44 (46)
T smart00261 7 CHPEC-ATCTGPGPDDCTSCKHGFFLDGGTCVSECPPGT 44 (46)
T ss_pred ccccc-cccCCcCcCcCccCCcccCCCCCCccCcCCCCc
Confidence 99999 569999999999998743 4699999999887
No 32
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=96.79 E-value=0.0087 Score=50.58 Aligned_cols=72 Identities=21% Similarity=0.354 Sum_probs=48.9
Q ss_pred eeE-EEeccceEEEEeeccCCCCCCCceeEEEEEEEcCCCCcccccCCCccCCCCcEEEecCCCCceEEeeCCccCceEE
Q psy2190 533 LAL-VVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYA 611 (976)
Q Consensus 533 L~v-~vs~~si~~LsW~~~p~~~~~d~~gY~v~y~~~~~~n~t~~~~~~~c~~~~W~~~~v~~~~~~~~l~~L~P~T~Y~ 611 (976)
+.+ ...++++. |+|+ ++.. ....+|.+.|....... ...|...........+.+.+|.|++.|.
T Consensus 7 ~~~~~~~~~~~~-v~W~--~~~~-~~~~~y~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~L~~~~~Y~ 71 (83)
T smart00060 7 LRVTDVTSTSVT-LSWE--PPPD-DGITGYIVGYRVEYREE-----------GSSWKEVNVTPSSTSYTLTGLKPGTEYE 71 (83)
T ss_pred EEEEEEeCCEEE-EEEC--CCCC-CCCCccEEEEEEEEecC-----------CCccEEEEecCCccEEEEeCcCCCCEEE
Confidence 555 55666899 9999 4432 11167888887652110 0246555544335789999999999999
Q ss_pred EEEEEEeC
Q psy2190 612 FFVKIYNS 619 (976)
Q Consensus 612 ~~V~a~n~ 619 (976)
|+|+|.+.
T Consensus 72 v~v~a~~~ 79 (83)
T smart00060 72 FRVRAVNG 79 (83)
T ss_pred EEEEEEcc
Confidence 99999874
No 33
>smart00261 FU Furin-like repeats.
Probab=96.77 E-value=0.0011 Score=50.98 Aligned_cols=41 Identities=29% Similarity=0.563 Sum_probs=34.6
Q ss_pred cccc-cccccCCCCCccccCCCCCCcccCCCCc-ccccCCcccccCCCCcc
Q psy2190 293 RCLT-REECLNNKRVTTKNFPQNMRMSYSDKAK-WRPFNGSCMEECPPGYN 341 (976)
Q Consensus 293 ~C~~-~~~C~~~~~~~tC~gp~~~~~~C~~c~~-~~~~~~~Cv~~Cp~g~~ 341 (976)
.|.. |++|. +|.|+.+.+ |++|.+ |++.++.||..||.|+|
T Consensus 3 ~C~~C~~~C~------~C~~~~~~~--C~~C~~~~~l~~~~Cv~~C~~~~~ 45 (46)
T smart00261 3 ECKPCHPECA------TCTGPGPDD--CTSCKHGFFLDGGTCVSECPPGTY 45 (46)
T ss_pred cccccccccc------ccCCcCcCc--CccCCcccCCCCCCccCcCCCCcc
Confidence 5666 77887 899998887 999976 66677999999999987
No 34
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=96.67 E-value=0.0039 Score=76.97 Aligned_cols=135 Identities=16% Similarity=0.294 Sum_probs=82.4
Q ss_pred Cc-ccccccCccCCCCCCccccccce--e-------ecCcccccccccccCCc------cceeeeecCceeeeccCcccc
Q psy2190 232 EE-CHPLCAGGCTGKRAEDCFVCIGF--I-------HDGHCLDQCPPNLQGQV------ATLQRILYGGIRYSYMNRRCL 295 (976)
Q Consensus 232 ~~-C~~~C~~~C~g~~~~~C~~C~~~--~-------~~~~Cv~~Cp~~~~~~~------~~~~~~~~~~~~y~~~~~~C~ 295 (976)
+. ||+.| ..|.++++..|.+|..- + ..++||..|+.+..... .+.....+.++.+...+.+|+
T Consensus 432 C~~C~~sC-a~C~~~~~~~CtsC~~g~~L~~~~~~~~~gtCv~~C~~~~~C~~C~~~i~gs~yCs~C~~~~~~p~nG~C~ 510 (800)
T PTZ00214 432 CTPCTDSC-AVCKDGTPTGCQQCSPGKILEFSIVSSESADCVDQCSVGSECAECGITIDGSRYCTRCKDASTYPFNGVCI 510 (800)
T ss_pred ccCCCCcc-cccCCCCcCcCccCCCCcEecccccCCCCCceeccCCCCCchhhcccccCCCcccccccCCcccCCCCcee
Confidence 45 99999 68999999999999742 2 24789999997532211 122333444444433344787
Q ss_pred ccccccCCCCCccccCCCCCCcccCCCCc-ccccCCcccc-------------------cCCCCcccCCCCCCcccCC-C
Q psy2190 296 TREECLNNKRVTTKNFPQNMRMSYSDKAK-WRPFNGSCME-------------------ECPPGYNTTADETSCVPCP-D 354 (976)
Q Consensus 296 ~~~~C~~~~~~~tC~gp~~~~~~C~~c~~-~~~~~~~Cv~-------------------~Cp~g~~~~~~~~~C~~C~-~ 354 (976)
...... ..|..+.... |++|.. |+++++.|.. .|-.|||.+ ..+.|++|+ +
T Consensus 511 ~~~~~~-----~~C~~~~~g~--Ct~C~~gyfL~~GGCY~~~~~PG~~~C~~a~~g~Ct~C~~GYyl~-~~~~C~~Cd~~ 582 (800)
T PTZ00214 511 PNTQRD-----AYCTSTANGA--CTTCSGAAFLMNGGCYTTEHYPGSTICDKQSNGKCTTTKKGYGIS-PDGKLLECDPT 582 (800)
T ss_pred cccCCC-----ccccCCCCCc--ccCCCCCcEecCCceeccCcCCCCCccccCCCCcccccccCcccC-CCCccccccch
Confidence 621111 1344444444 999954 4445444422 466788865 346799999 9
Q ss_pred CCCCCCcceeeccccccccCCCeEEcCceEE
Q psy2190 355 CPKVCKGVHVKSIEVARSTKGCTVINGSLGI 385 (976)
Q Consensus 355 C~~~C~g~~~~~~~~~~~~~~C~~i~G~l~i 385 (976)
|.. |.++ ....|+...-...+
T Consensus 583 C~~-C~~~---------~~~~C~sC~~g~yL 603 (800)
T PTZ00214 583 CLA-CTAP---------GPGRCTRCPSDKLL 603 (800)
T ss_pred hhh-ccCC---------CCCcceECCCCCEe
Confidence 954 9876 34568877644433
No 35
>KOG3632|consensus
Probab=96.61 E-value=0.0022 Score=76.45 Aligned_cols=123 Identities=20% Similarity=0.257 Sum_probs=86.1
Q ss_pred cccccceeeeE-EEeccceEEEEeeccCCCCCCCceeEEEEEEEcCCCCcccccCCCccCCCCcEEEecCCCCceEEeeC
Q psy2190 525 EFICGFSNLAL-VVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMN 603 (976)
Q Consensus 525 ~~~C~~~~L~v-~vs~~si~~LsW~~~p~~~~~d~~gY~v~y~~~~~~n~t~~~~~~~c~~~~W~~~~v~~~~~~~~l~~ 603 (976)
.+.-.+.+|.+ +++.+++. ++|- ++++ .+. -.| |... ..|. .+......+++.+
T Consensus 670 ~a~vvpsqlrv~n~tqtSa~-itwv--p~ns--n~~-Hvi-yln~-----------eE~~-------ps~a~~y~ytf~~ 724 (1335)
T KOG3632|consen 670 AAPVVPSQLRVWNATQTSAM-ITWV--PFNS--NFL-HVI-YLNA-----------EEPR-------PSVAEMYNYTFMR 724 (1335)
T ss_pred cccccchhhhhhhhhchhhh-eeee--ecCC--Ccc-eee-ecCC-----------ccCC-------CchhhhhHHHHhc
Confidence 34456678888 99999999 9999 6655 211 122 2211 0000 0111145688999
Q ss_pred CccCceEEEEEEEEeC----------CCCCCCCeEEEecCCCCC-CCCceeEEEE-ecCcEEEEEecCCC-----CCCC-
Q psy2190 604 LEPATEYAFFVKIYNS----------QRIVRSNISLQTTLPTKP-SIPYQFEVVR-VNSSSVTLRWGEPK-----HPHG- 665 (976)
Q Consensus 604 L~P~T~Y~~~V~a~n~----------g~g~~S~~~~~~T~~~~P-s~P~~l~~~~-~s~tsi~vsW~pP~-----~~nG- 665 (976)
|+|+|.|.++|.+.-. ..+..+..+.|+|.++-| .+|.++++.. .++..+.++|.||. ..||
T Consensus 725 lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv 804 (1335)
T KOG3632|consen 725 LRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGV 804 (1335)
T ss_pred cCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccCce
Confidence 9999999999988765 233445678899988765 8999998876 57889999999986 3456
Q ss_pred ceeEEEE
Q psy2190 666 ILEKYVI 672 (976)
Q Consensus 666 ~I~~Y~V 672 (976)
.+++|-|
T Consensus 805 ~vtgYav 811 (1335)
T KOG3632|consen 805 AVTGYAV 811 (1335)
T ss_pred eeeeeee
Confidence 6999999
No 36
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=96.39 E-value=0.0041 Score=76.73 Aligned_cols=96 Identities=28% Similarity=0.613 Sum_probs=67.3
Q ss_pred ccccccCccCCCCCCccccccceee--------cCccc--ccccccccCCccceeeeecCceeeeccCccccc-c-cccc
Q psy2190 234 CHPLCAGGCTGKRAEDCFVCIGFIH--------DGHCL--DQCPPNLQGQVATLQRILYGGIRYSYMNRRCLT-R-EECL 301 (976)
Q Consensus 234 C~~~C~~~C~g~~~~~C~~C~~~~~--------~~~Cv--~~Cp~~~~~~~~~~~~~~~~~~~y~~~~~~C~~-~-~~C~ 301 (976)
|++.| ..|.+|++.+|++|..-++ .+.|| ..|+.++ |.... .|++ + +.|.
T Consensus 579 Cd~~C-~~C~~~~~~~C~sC~~g~yL~~~~~~~~g~Cv~~~~C~~GY----------------Y~d~~-~C~~C~~~~C~ 640 (800)
T PTZ00214 579 CDPTC-LACTAPGPGRCTRCPSDKLLKRASGAATGSCVDPGACVDGY----------------YADGD-ACLPCATPGCK 640 (800)
T ss_pred ccchh-hhccCCCCCcceECCCCCEeccccccccccccCcccCCCCc----------------ccCCC-ccccCCccccc
Confidence 89999 7799999999999975321 35788 4999998 76544 7888 4 5676
Q ss_pred CCCCCccccCCCCCCcccCCCCc--cc-ccCCcccccCC------------------CCcccCCCCCCcccCCCCCC
Q psy2190 302 NNKRVTTKNFPQNMRMSYSDKAK--WR-PFNGSCMEECP------------------PGYNTTADETSCVPCPDCPK 357 (976)
Q Consensus 302 ~~~~~~tC~gp~~~~~~C~~c~~--~~-~~~~~Cv~~Cp------------------~g~~~~~~~~~C~~C~~C~~ 357 (976)
+|.+.. . |++|.. |+ +++..|+..|| .||+++.....|.++..|+.
T Consensus 641 ------tC~~~~--~--C~~C~~~~~ls~~~~~C~~~C~~~~~~~~~~~~~~~C~C~~g~~p~~~~~~C~~~~~C~~ 707 (800)
T PTZ00214 641 ------TCGHAS--F--CTECAGELFVSLDGQSCLEECTGDKVVGEVSGGVRRCWCERGFLPALDRSGCVLPTECPP 707 (800)
T ss_pred ------cccCCC--C--cCcCCCCceecCcCCchhhcCCCccccccccCCcceeEecCCcccccCCCccccccCCCc
Confidence 786443 3 999944 33 36777999997 33444444456776665554
No 37
>KOG4152|consensus
Probab=95.52 E-value=0.02 Score=64.11 Aligned_cols=72 Identities=25% Similarity=0.375 Sum_probs=59.2
Q ss_pred EeeCCccCceEEEEEEEEeC-CCCCCCCeEEEecC-CCCCCCCceeEEEEecCcEEEEEecCCCCC-CCceeEEEE
Q psy2190 600 EVMNLEPATEYAFFVKIYNS-QRIVRSNISLQTTL-PTKPSIPYQFEVVRVNSSSVTLRWGEPKHP-HGILEKYVI 672 (976)
Q Consensus 600 ~l~~L~P~T~Y~~~V~a~n~-g~g~~S~~~~~~T~-~~~Ps~P~~l~~~~~s~tsi~vsW~pP~~~-nG~I~~Y~V 672 (976)
.-..|-+++.|.|+|.|+|. |.|++|.+..++|- ++.|++|..+++.. +---|.+.|+||..+ .|.|..|..
T Consensus 650 ~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k-~~eGi~l~weppt~p~sg~Iieys~ 724 (830)
T KOG4152|consen 650 VKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKK-TIEGISLVWEPPTKPGSGTIIEYSP 724 (830)
T ss_pred cccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccccccc-cccceeecccCCCCCCCcceEEeeh
Confidence 34579999999999999999 99999999988884 66778887776533 334588999999987 678999988
No 38
>KOG4260|consensus
Probab=95.40 E-value=0.028 Score=58.18 Aligned_cols=33 Identities=30% Similarity=0.806 Sum_probs=27.7
Q ss_pred Cc-ccccccCccCCCCCCccccccc--eeecCcccc
Q psy2190 232 EE-CHPLCAGGCTGKRAEDCFVCIG--FIHDGHCLD 264 (976)
Q Consensus 232 ~~-C~~~C~~~C~g~~~~~C~~C~~--~~~~~~Cv~ 264 (976)
+. ||..|+++|+|+++..|..|++ .++...||+
T Consensus 200 Ct~Ch~~C~~~Csg~~~k~C~kCkkGW~lde~gCvD 235 (350)
T KOG4260|consen 200 CTACHEGCLGVCSGESSKGCSKCKKGWKLDEEGCVD 235 (350)
T ss_pred hhhhhhhhhcccCCCCCCChhhhcccceeccccccc
Confidence 55 9999999999999999999986 345677764
No 39
>KOG4367|consensus
Probab=95.34 E-value=0.015 Score=63.45 Aligned_cols=78 Identities=13% Similarity=0.208 Sum_probs=61.9
Q ss_pred cEEEEEecCCCCCCCceEEEEEEEEEcCCCCcceeeeeeccccCCCcEEEeecCC-ceEEEEEEEEeCCCCCCCCCcEeE
Q psy2190 861 SALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPA-GSYLFRLRVVSLGGEGPWTSWKPC 939 (976)
Q Consensus 861 ~sv~l~W~~P~~~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~p-g~Y~~~V~A~t~aG~G~~S~~~~~ 939 (976)
+++.|.|+.|+...-+..+|.++....++. ...+... ...+..++.||.- +.|..||.|+|.+|.+++|+...+
T Consensus 453 ns~t~~wkqp~~~~~~~dg~~leld~g~~g-~frevy~----g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~l 527 (699)
T KOG4367|consen 453 NSATLSWKQPPLSTVPADGYILELDDGNGG-QFREVYV----GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVL 527 (699)
T ss_pred CceEEEeecCCCCCCCCcceEEEeecCCCC-ceeEEEe----cCceeEEecceecchhHHHHHHHhhccCCCcccceeEe
Confidence 799999998888778899999998766543 2232232 2345789999999 499999999999999999998877
Q ss_pred EEec
Q psy2190 940 VIES 943 (976)
Q Consensus 940 ~~~~ 943 (976)
.+..
T Consensus 528 qts~ 531 (699)
T KOG4367|consen 528 QTSE 531 (699)
T ss_pred eecc
Confidence 6654
No 40
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=95.28 E-value=0.057 Score=49.63 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=52.9
Q ss_pred CeeEEEecCCcEEEEEecCCCCC---CCc---------eEEEEEEEEEcCCCCcceeeeeeccccCCCcEEEeecCCc-e
Q psy2190 851 DSLNFEMINASALRIRWHPPSRP---NGI---------IVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAG-S 917 (976)
Q Consensus 851 ~v~~~~~~~~~sv~l~W~~P~~~---NG~---------I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~pg-~ 917 (976)
.+.+... . +++.|.+.+|..+ ++. -+.|.|.|++.... ....... .....+.|.+|.|+ .
T Consensus 7 ~v~v~~~-~-~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~-~~~~~~~----~~~~~~~l~~L~p~t~ 79 (106)
T PF09294_consen 7 SVNVSSC-G-GSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN-EKKKEIE----TKNSSVTLSDLKPGTN 79 (106)
T ss_dssp EEEEEEE-T-TEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS-CEEEEEE----SSSEEEEEES--TTSE
T ss_pred EEEEEEC-C-CEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc-cceEEEe----ecCCEEEEeCCCCCCC
Confidence 4666443 4 6999999999721 111 26799999988765 2222121 23335799999996 9
Q ss_pred EEEEEEEEeC--CCCCCCCCcEeEEE
Q psy2190 918 YLFRLRVVSL--GGEGPWTSWKPCVI 941 (976)
Q Consensus 918 Y~~~V~A~t~--aG~G~~S~~~~~~~ 941 (976)
|-|+|+|... .-.|.+|++.-+.+
T Consensus 80 YCv~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 80 YCVSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp EEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred EEEEEEEEeccCCCcCCCCCCEeEeC
Confidence 9999999333 23688888877665
No 41
>KOG4152|consensus
Probab=94.92 E-value=0.094 Score=59.01 Aligned_cols=126 Identities=18% Similarity=0.251 Sum_probs=74.0
Q ss_pred EEcCCccccEEEEEEEEEecCccCCCCCCCCCCCCCCccc-eeEEecccCCCCCCCCCCeeEEEecCCcEEEEEecCCCC
Q psy2190 794 TMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEET-LVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSR 872 (976)
Q Consensus 794 ~l~gL~p~T~Y~~~V~A~~~~~~~~~~~~~~~~~g~s~~~-~~~~~T~~~~~~~~~p~~v~~~~~~~~~sv~l~W~~P~~ 872 (976)
.-..|-+++.|+|+|.|.|.. |-++.+ .....|-.. +-+..|..+.....- ..+.+.|+||..
T Consensus 650 ~k~~lv~Gq~yrfrV~aIng~-------------G~gp~s~i~~~kTc~p-G~P~apS~~ri~k~~--eGi~l~weppt~ 713 (830)
T KOG4152|consen 650 VKTSLVTGQAYRFRVTAINGK-------------GPGPASTILKLKTCAP-GKPTAPSGARIKKTI--EGISLVWEPPTK 713 (830)
T ss_pred cccccccccceeeeeeeeecc-------------CCCchhhheeeeeccC-CCCCCcccccccccc--cceeecccCCCC
Confidence 346788999999999999987 444533 334455433 233445555443322 479999999999
Q ss_pred C-CCceEEEEEEEEEcCC---CCc------------ceeeeeeccccCCCcEEEeecCCc-eEEEEEEEEeCCCCCCCCC
Q psy2190 873 P-NGIIVAYNIEYKRESG---GNS------------ENMCRTRKDIDRDSGLYLYDYPAG-SYLFRLRVVSLGGEGPWTS 935 (976)
Q Consensus 873 ~-NG~I~~Y~I~y~~~~~---~~~------------~~~~v~~~~~~~~~~~~l~~L~pg-~Y~~~V~A~t~aG~G~~S~ 935 (976)
+ -|.|..|..+..-..+ ... ...|+... ..-..-+.+...+ .-.|||.|.+..|.|+.+.
T Consensus 714 p~sg~Iieys~ylAi~tq~~~~~~sql~fmr~ycg~~t~c~vt~---g~l~tA~~d~t~~paivfri~aknekGyGpatq 790 (830)
T KOG4152|consen 714 PGSGTIIEYSPYLAIITQAGATGVSQLPFMRSYCGIITTCVVTS---GKLITAVPDITTGPAIVFRIVAKNEKGYGPATQ 790 (830)
T ss_pred CCCcceEEeehhhHhhhhhhccCccccceeeeecccceeeEEec---ccceeeccccccCcceEEEEEecCCCCCCcceE
Confidence 8 4788888766422211 000 11121110 0001111222234 6789999999999998876
Q ss_pred cEe
Q psy2190 936 WKP 938 (976)
Q Consensus 936 ~~~ 938 (976)
.+-
T Consensus 791 vrw 793 (830)
T KOG4152|consen 791 VRW 793 (830)
T ss_pred EEe
Confidence 643
No 42
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=94.89 E-value=0.1 Score=48.23 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=51.8
Q ss_pred CCCeeEEEecCCcEEEEEecCCCCCCCceEEEEEEEEEcCCCCccee--eeeeccccCCCcEEEeecC--C-ceEEEEEE
Q psy2190 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENM--CRTRKDIDRDSGLYLYDYP--A-GSYLFRLR 923 (976)
Q Consensus 849 p~~v~~~~~~~~~sv~l~W~~P~~~NG~I~~Y~I~y~~~~~~~~~~~--~v~~~~~~~~~~~~l~~L~--p-g~Y~~~V~ 923 (976)
|.++.+...+- ...|+|+++.... .-..|.|+|+...+..+... |..- ..+.+.|+... + +.|.+||+
T Consensus 25 P~nv~~~s~nf--~~iL~W~~~~~~~-~~~~ytVq~~~~~~~~W~~v~~C~~i----~~~~Cdlt~~~~~~~~~Y~~rV~ 97 (107)
T PF01108_consen 25 PQNVTVDSVNF--KHILRWDPGPGSP-PNVTYTVQYKKYGSSSWKDVPGCQNI----TETSCDLTDETSDPSESYYARVR 97 (107)
T ss_dssp CEEEEEEEETT--EEEEEEEESTTSS-STEEEEEEEEESSTSCEEEECCEEEE----SSSEEECTTCCTTTTSEEEEEEE
T ss_pred CCeeEEEEECC--ceEEEeCCCCCCC-CCeEEEEEEEecCCcceeeccceecc----cccceeCcchhhcCcCCEEEEEE
Confidence 66787777654 7899999855422 34789999995555446655 6532 33578887644 4 49999999
Q ss_pred EEeCCCC
Q psy2190 924 VVSLGGE 930 (976)
Q Consensus 924 A~t~aG~ 930 (976)
|......
T Consensus 98 A~~~~~~ 104 (107)
T PF01108_consen 98 AEVGNQT 104 (107)
T ss_dssp EEETTEE
T ss_pred EEeCCcc
Confidence 9875543
No 43
>KOG4806|consensus
Probab=94.42 E-value=1.4 Score=47.66 Aligned_cols=120 Identities=16% Similarity=0.189 Sum_probs=68.8
Q ss_pred EcCCccccEEEEEEEEEecCccCCCCCCCCCCCCCCccceeEEecccC-CCCCCCCCCeeEEEecCC-cEEEEEecCCCC
Q psy2190 795 MVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEVD-HLADTIPADSLNFEMINA-SALRIRWHPPSR 872 (976)
Q Consensus 795 l~gL~p~T~Y~~~V~A~~~~~~~~~~~~~~~~~g~s~~~~~~~~T~~~-~~~~~~p~~v~~~~~~~~-~sv~l~W~~P~~ 872 (976)
--.+.|+..|..++...|.. + +. ....+.+.|.+. .+-+.+|.+.++..+... +++.|.|...++
T Consensus 288 Qfvv~~~~~~~~rf~~~ndd----------e--~~-~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d 354 (454)
T KOG4806|consen 288 QFVVLPGERYLMRFEPSNDD----------E--AL-QKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPD 354 (454)
T ss_pred EEEecCCCceEEEEEecCCc----------h--hh-heeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccCcc
Confidence 34567778888888887765 1 11 233333444322 224566777777766543 789999986544
Q ss_pred CCCceEEEEEEEEEcCCCC--------------cc-----eee-e--e--eccc-cCCCcEEEeecCCc-eEEEEEEEEe
Q psy2190 873 PNGIIVAYNIEYKRESGGN--------------SE-----NMC-R--T--RKDI-DRDSGLYLYDYPAG-SYLFRLRVVS 926 (976)
Q Consensus 873 ~NG~I~~Y~I~y~~~~~~~--------------~~-----~~~-v--~--~~~~-~~~~~~~l~~L~pg-~Y~~~V~A~t 926 (976)
. -+.|-|+-++..+.+ .. .-| . + ++.. .+...-+|.||.|| +|.+-|.|.-
T Consensus 355 ~---~~kyCIy~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~ 431 (454)
T KOG4806|consen 355 E---ELKYCIYVFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANL 431 (454)
T ss_pred h---heeEEEEEecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcc
Confidence 2 356777655433210 00 111 0 0 0000 11234678999998 9999999987
Q ss_pred CCCC
Q psy2190 927 LGGE 930 (976)
Q Consensus 927 ~aG~ 930 (976)
..|.
T Consensus 432 ~~g~ 435 (454)
T KOG4806|consen 432 SMGK 435 (454)
T ss_pred cCCc
Confidence 7653
No 44
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=94.34 E-value=0.33 Score=44.51 Aligned_cols=84 Identities=20% Similarity=0.245 Sum_probs=50.8
Q ss_pred eeeeEEEeccceEEEEeeccCCC-----CC----CCc---eeEEEEEEEcCCCCcccccCCCccCCCCcEEEecCCCCce
Q psy2190 531 SNLALVVLNKTDVSIRFQLNENE-----KV----PDN---QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKT 598 (976)
Q Consensus 531 ~~L~v~vs~~si~~LsW~~~p~~-----~~----~d~---~gY~v~y~~~~~~n~t~~~~~~~c~~~~W~~~~v~~~~~~ 598 (976)
..+++....+++. |.+.+ |.. .. .|. +.|.|+|++... . -+..........
T Consensus 6 P~v~v~~~~~~l~-V~i~~-P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~--------------~-~~~~~~~~~~~~ 68 (106)
T PF09294_consen 6 PSVNVSSCGGSLH-VTIKP-PMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGS--------------N-EKKKEIETKNSS 68 (106)
T ss_dssp SEEEEEEETTEEE-EEEEE-SEEEEECSSSEEEHHHHHGG-EEEEEEEETTT--------------S-CEEEEEESSSEE
T ss_pred CEEEEEECCCEEE-EEEEC-CCcccccCCCCCcHHHhCCCeEEEEEEEeCCC--------------c-cceEEEeecCCE
Confidence 3466677788888 88883 220 10 011 679999998732 1 111122222567
Q ss_pred EEeeCCccCceEEEEEEEEeC---CCCCCCCeEEEe
Q psy2190 599 VEVMNLEPATEYAFFVKIYNS---QRIVRSNISLQT 631 (976)
Q Consensus 599 ~~l~~L~P~T~Y~~~V~a~n~---g~g~~S~~~~~~ 631 (976)
++|.+|.|+++|-|.|++... ..|.+|++.=++
T Consensus 69 ~~l~~L~p~t~YCv~V~~~~~~~~~~s~~S~~~C~~ 104 (106)
T PF09294_consen 69 VTLSDLKPGTNYCVSVQAFSPSQNKNSQPSEPQCIT 104 (106)
T ss_dssp EEEES--TTSEEEEEEEEEECSSTEEEEEBSEEEEE
T ss_pred EEEeCCCCCCCEEEEEEEEeccCCCcCCCCCCEeEe
Confidence 799999999999999999544 456666665433
No 45
>KOG4367|consensus
Probab=92.63 E-value=0.11 Score=56.87 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=60.6
Q ss_pred EEeccceEEEEeeccCCCCCCCc-eeEEEEEEEcCCCCcccccCCCccCCCCcEEEecCCCCceEEeeCCccCceEEEEE
Q psy2190 536 VVLNKTDVSIRFQLNENEKVPDN-QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFV 614 (976)
Q Consensus 536 ~vs~~si~~LsW~~~p~~~~~d~-~gY~v~y~~~~~~n~t~~~~~~~c~~~~W~~~~v~~~~~~~~l~~L~P~T~Y~~~V 614 (976)
.....++. |+|.+ |+.. .-+ .||.+..-.. .+..++.+.+.. ++..+++||.-++.|..+|
T Consensus 449 ~t~nns~t-~~wkq-p~~~-~~~~dg~~leld~g--------------~~g~frevy~g~-etmctvdglhfns~y~arv 510 (699)
T KOG4367|consen 449 CTHNNSAT-LSWKQ-PPLS-TVPADGYILELDDG--------------NGGQFREVYVGK-ETMCTVDGLHFNSTYNARV 510 (699)
T ss_pred hccCCceE-EEeec-CCCC-CCCCcceEEEeecC--------------CCCceeEEEecC-ceeEEecceecchhHHHHH
Confidence 45567888 99994 2222 122 8999876432 123455555553 7889999999999999999
Q ss_pred EEEeC-CCCCCCCeEEEecCCC
Q psy2190 615 KIYNS-QRIVRSNISLQTTLPT 635 (976)
Q Consensus 615 ~a~n~-g~g~~S~~~~~~T~~~ 635 (976)
+++|. |.++.|+.+..+|.+-
T Consensus 511 ka~n~tg~s~ys~tl~lqts~v 532 (699)
T KOG4367|consen 511 KAFNKTGVSPYSKTLVLQTSEV 532 (699)
T ss_pred HHhhccCCCcccceeEeeecce
Confidence 99999 9999999988888653
No 46
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=92.58 E-value=0.76 Score=42.35 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=49.1
Q ss_pred ccceeeeEEEeccceEEEEeeccCCCCCCCceeEEEEEEEcCCCCcccccCCCccCCCCcEEEe--cCCCCceEEeeCCc
Q psy2190 528 CGFSNLALVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKD--INSKNKTVEVMNLE 605 (976)
Q Consensus 528 C~~~~L~v~vs~~si~~LsW~~~p~~~~~d~~gY~v~y~~~~~~n~t~~~~~~~c~~~~W~~~~--v~~~~~~~~l~~L~ 605 (976)
-.+.++.+.......+ |+|+ +....+....|.|+|+.. +.+.|+.+. .....+...|+...
T Consensus 23 p~P~nv~~~s~nf~~i-L~W~--~~~~~~~~~~ytVq~~~~--------------~~~~W~~v~~C~~i~~~~Cdlt~~~ 85 (107)
T PF01108_consen 23 PAPQNVTVDSVNFKHI-LRWD--PGPGSPPNVTYTVQYKKY--------------GSSSWKDVPGCQNITETSCDLTDET 85 (107)
T ss_dssp SSCEEEEEEEETTEEE-EEEE--ESTTSSSTEEEEEEEEES--------------STSCEEEECCEEEESSSEEECTTCC
T ss_pred CCCCeeEEEEECCceE-EEeC--CCCCCCCCeEEEEEEEec--------------CCcceeeccceecccccceeCcchh
Confidence 3456777644455567 8999 432212338999999933 346788762 11125777777644
Q ss_pred --cCceEEEEEEEEeC
Q psy2190 606 --PATEYAFFVKIYNS 619 (976)
Q Consensus 606 --P~T~Y~~~V~a~n~ 619 (976)
+.-.|.+||+|...
T Consensus 86 ~~~~~~Y~~rV~A~~~ 101 (107)
T PF01108_consen 86 SDPSESYYARVRAEVG 101 (107)
T ss_dssp TTTTSEEEEEEEEEET
T ss_pred hcCcCCEEEEEEEEeC
Confidence 78999999999853
No 47
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=91.24 E-value=13 Score=40.65 Aligned_cols=71 Identities=13% Similarity=0.022 Sum_probs=50.5
Q ss_pred eEEeeCCccCceEEEEEEEEeC-CCCCCCCeEEEecCCCCCCCCceeEEEEecCcEEEEEecCCCCCCCceeEEEE
Q psy2190 598 TVEVMNLEPATEYAFFVKIYNS-QRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVI 672 (976)
Q Consensus 598 ~~~l~~L~P~T~Y~~~V~a~n~-g~g~~S~~~~~~T~~~~Ps~P~~l~~~~~s~tsi~vsW~pP~~~nG~I~~Y~V 672 (976)
.+.-.+|.++..|.+.|.+... +.-..|-...--|..+.|..-.++++....++.+.|+|+.+...+ +|+|
T Consensus 125 ~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~~----yy~I 196 (343)
T COG3401 125 EFIDSDLGHNEKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAED----YYRI 196 (343)
T ss_pred hheecccccccceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCccccc----eEEE
Confidence 4566799999999999999875 222233222333455566666677777788999999999877644 8998
No 48
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=91.06 E-value=0.81 Score=37.83 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=21.0
Q ss_pred cEEEeecCCceEEEEEEEEeCCCCCCCC
Q psy2190 907 GLYLYDYPAGSYLFRLRVVSLGGEGPWT 934 (976)
Q Consensus 907 ~~~l~~L~pg~Y~~~V~A~t~aG~G~~S 934 (976)
.+.+++|.||.|.|+|+|.+..|.-...
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCcc
Confidence 7899999999999999999987755443
No 49
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=89.70 E-value=2.6 Score=51.07 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=65.4
Q ss_pred cccEEEEcCCccccEEEEEEEEEecCccCCCCCCCCCCCCCCccc-eeEEecccCCCCCCCCCCeeEEEecCCcEEEEEe
Q psy2190 789 PETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEET-LVMSRTEVDHLADTIPADSLNFEMINASALRIRW 867 (976)
Q Consensus 789 ~~~~~~l~gL~p~T~Y~~~V~A~~~~~~~~~~~~~~~~~g~s~~~-~~~~~T~~~~~~~~~p~~v~~~~~~~~~sv~l~W 867 (976)
....+.+.||.+ .+|.++|+|.|.. +. .|+.+ ....+-.....|+ |..+.......+-.+.+.|
T Consensus 658 ~~~~~~~~gi~~-GqY~i~VrAiN~~---------g~---~~~~a~s~~f~i~g~~~Pp--p~~~t~~a~~it~~~~l~v 722 (952)
T COG4733 658 SAAGFDVEGIPA-GQYAIRVRAINVF---------EP---NSPDATAYEFALNGKKVPP--PKAMIYDAVIITLVIRLVV 722 (952)
T ss_pred cccceeecCcCc-cceEEEEEEeecc---------CC---CCCCcceeEEEecCCCCCC--CcccccceEEEEeeeeEEE
Confidence 566799999999 6999999999987 22 22333 2222222222222 2222222211114678888
Q ss_pred cCCCCCCCceEEEEEEEEEcCCCCcceeeeeeccccCCCcEEEeecCCc-eEEEEEEEEeCCCCCCC
Q psy2190 868 HPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAG-SYLFRLRVVSLGGEGPW 933 (976)
Q Consensus 868 ~~P~~~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~pg-~Y~~~V~A~t~aG~G~~ 933 (976)
--|... =.+..=++++....+......-+..-.+ ....-.+|+|| .|.|++|+++..|...+
T Consensus 723 ~dPt~~-~d~~~sei~~s~~~d~~~~Ar~LG~~~~---~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~ 785 (952)
T COG4733 723 GDPTGA-VDITSTEIRSAVIADGNFQARSLGNLNY---PGLFSVGIQAGLTFWFRNRNVDLVGNNDK 785 (952)
T ss_pred ecCCcc-eEEeeeeeeeeccccchhHHhhhhcccc---ccccccCcCCCceEEEEeeeccccccccc
Confidence 777521 1122222332222221110110111011 11222699998 99999999999996543
No 50
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=88.05 E-value=0.81 Score=52.66 Aligned_cols=41 Identities=37% Similarity=0.959 Sum_probs=32.5
Q ss_pred cCCcccccCCCCcccCCCCCCcccCC-CCCCCCCcceeeccccccccCCCeEEc
Q psy2190 328 FNGSCMEECPPGYNTTADETSCVPCP-DCPKVCKGVHVKSIEVARSTKGCTVIN 380 (976)
Q Consensus 328 ~~~~Cv~~Cp~g~~~~~~~~~C~~C~-~C~~~C~g~~~~~~~~~~~~~~C~~i~ 380 (976)
.+..|...||.|||.+ ...|.+|| .| +.|.+. ....||.-.
T Consensus 88 ~~~~~c~~C~~G~y~~--~~~C~~C~~~C-~~C~~~---------~~~~Ct~C~ 129 (397)
T PF03302_consen 88 SGDACCSECPDGYYKN--GNKCVPCHESC-ATCSGG---------APNQCTSCK 129 (397)
T ss_pred ccCccccCCCCCcccc--CCCCCCCCccc-cccCCC---------CCCCCcccC
Confidence 4556888999999975 46899999 99 669886 345788876
No 51
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=84.49 E-value=17 Score=39.81 Aligned_cols=73 Identities=16% Similarity=0.060 Sum_probs=48.8
Q ss_pred CceEEeeCCccCceEEEEEEEEeC-CCCCCCCeEEEecCCCCCCCCceeEEEEecCcEEEEEecCCCCCCCceeEEEE
Q psy2190 596 NKTVEVMNLEPATEYAFFVKIYNS-QRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVI 672 (976)
Q Consensus 596 ~~~~~l~~L~P~T~Y~~~V~a~n~-g~g~~S~~~~~~T~~~~Ps~P~~l~~~~~s~tsi~vsW~pP~~~nG~I~~Y~V 672 (976)
++.+....|.+.+.|.+....++. .....|+.....|. .-.+.+.+.+.-.-+.++.+-|.|... -.+.+|.|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--~i~~~~~~~~~~~~~~~~~~~w~~~~d--~~~~~Y~i 103 (343)
T COG3401 30 QTHYYDEGLEGEESYPYQEGTTKVDKISYDSERILVKTS--FIERVRSVFASLERPKSVKVFWSPHPD--VSVGKYII 103 (343)
T ss_pred hhhhhhccccccCcceeeecccccceeeecCcceEEEee--eccccccccchhcCcceeeecccccCC--CCCCeEEE
Confidence 677889999999999988766654 44455666666665 222333333434567779999998543 24567888
No 52
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=83.11 E-value=1.2 Score=51.16 Aligned_cols=67 Identities=22% Similarity=0.483 Sum_probs=47.0
Q ss_pred Cccccccce--e--ecCcccccccccccCCccceeeeecCceeeeccCccccc-cccccCCCCCccccCCCCCCcccCCC
Q psy2190 248 EDCFVCIGF--I--HDGHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLT-REECLNNKRVTTKNFPQNMRMSYSDK 322 (976)
Q Consensus 248 ~~C~~C~~~--~--~~~~Cv~~Cp~~~~~~~~~~~~~~~~~~~y~~~~~~C~~-~~~C~~~~~~~tC~gp~~~~~~C~~c 322 (976)
..|..|... + .+..|...||.|+ |...+ .|+. |+.|. +|.++.+.+ |++|
T Consensus 74 ~~C~~C~~~~~~~~~~~~~c~~C~~G~----------------y~~~~-~C~~C~~~C~------~C~~~~~~~--Ct~C 128 (397)
T PF03302_consen 74 KTCKKCSIGNCLTCSGDACCSECPDGY----------------YKNGN-KCVPCHESCA------TCSGGAPNQ--CTSC 128 (397)
T ss_pred ccccccccccccccccCccccCCCCCc----------------cccCC-CCCCCCcccc------ccCCCCCCC--Cccc
Confidence 367777632 2 2445778999998 87665 8999 89998 899998887 9999
Q ss_pred Cc-ccc-c-----CCcccccCCCC
Q psy2190 323 AK-WRP-F-----NGSCMEECPPG 339 (976)
Q Consensus 323 ~~-~~~-~-----~~~Cv~~Cp~g 339 (976)
.+ +++ + .+.|...|-.+
T Consensus 129 ~~g~~L~~~~~~~~~tC~~~c~~~ 152 (397)
T PF03302_consen 129 KPGKVLKYGTDGTKGTCGAECTED 152 (397)
T ss_pred CCCcccccccCCCcCccccccccc
Confidence 55 332 2 25666666444
No 53
>KOG0994|consensus
Probab=78.48 E-value=5 Score=50.02 Aligned_cols=96 Identities=27% Similarity=0.528 Sum_probs=57.5
Q ss_pred ccccccCccCCCCCCccccccc---ee-------ecCcccccccccccCCccceeeeecCceeeeccCccccc----ccc
Q psy2190 234 CHPLCAGGCTGKRAEDCFVCIG---FI-------HDGHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLT----REE 299 (976)
Q Consensus 234 C~~~C~~~C~g~~~~~C~~C~~---~~-------~~~~Cv~~Cp~~~~~~~~~~~~~~~~~~~y~~~~~~C~~----~~~ 299 (976)
|+ .|+.|=+|.|++-|.+|.= .. ..|.|+ |-+|. |...=.+|.+ .++
T Consensus 795 Cd-qCApGtyGFGPsGCk~CdC~~~Gs~~~~Cd~~tGQC~--C~~g~----------------ygrqCnqCqpG~WgFPe 855 (1758)
T KOG0994|consen 795 CD-QCAPGTYGFGPSGCKACDCNSIGSLDKYCDKITGQCQ--CRPGT----------------YGRQCNQCQPGYWGFPE 855 (1758)
T ss_pred cc-ccCCcccCcCCccCcccccccccccccccccccccee--ecccc----------------chhhccccCCCccCCCc
Confidence 53 5888999999999999952 11 134443 33344 6554446666 466
Q ss_pred ccCCC---CCccccCCCCCCcccCCCCcccccCCcccccCCCCcccCC---CCCCcccCC
Q psy2190 300 CLNNK---RVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNTTA---DETSCVPCP 353 (976)
Q Consensus 300 C~~~~---~~~tC~gp~~~~~~C~~c~~~~~~~~~Cv~~Cp~g~~~~~---~~~~C~~C~ 353 (976)
|.... -..+|.-- ... |+.|..+. .+..| ..|-.|||.+. ....|+||.
T Consensus 856 Cr~CqCNgHA~~Cd~~-tGa--Ci~CqD~T-~G~~C-drCl~GyyGdP~lg~g~~CrPCp 910 (1758)
T KOG0994|consen 856 CRPCQCNGHADTCDPI-TGA--CIDCQDST-TGHSC-DRCLDGYYGDPRLGSGIGCRPCP 910 (1758)
T ss_pred CccccccCcccccCcc-ccc--cccccccc-cccch-hhhhccccCCcccCCCCCCCCCC
Confidence 76432 11133322 222 88897763 34444 67999999883 356677664
No 54
>KOG4260|consensus
Probab=74.56 E-value=2.6 Score=44.10 Aligned_cols=34 Identities=26% Similarity=0.611 Sum_probs=25.6
Q ss_pred cCCcccccCCCCccc---CCCCCCcccCC-CCCCCCCcc
Q psy2190 328 FNGSCMEECPPGYNT---TADETSCVPCP-DCPKVCKGV 362 (976)
Q Consensus 328 ~~~~Cv~~Cp~g~~~---~~~~~~C~~C~-~C~~~C~g~ 362 (976)
.+..|. .|-.+||. +.....|..|| .|.-+|+|.
T Consensus 177 ~Gp~C~-~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~ 214 (350)
T KOG4260|consen 177 TGPLCR-YCGIEYFESSRNEQHLVCTACHEGCLGVCSGE 214 (350)
T ss_pred CCcccc-ccchHHHHhhcccccchhhhhhhhhhcccCCC
Confidence 345553 67788864 35678999999 998899987
No 55
>PLN02533 probable purple acid phosphatase
Probab=74.22 E-value=18 Score=42.26 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=27.6
Q ss_pred ceEEeeCCccCceEEEEEEEEeCCCCCCCCeEEEecCCC
Q psy2190 597 KTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPT 635 (976)
Q Consensus 597 ~~~~l~~L~P~T~Y~~~V~a~n~g~g~~S~~~~~~T~~~ 635 (976)
..++|++|+|+|+|.|+| |....|+...|+|.+.
T Consensus 103 H~v~l~~L~p~T~Y~Yrv-----g~~~~s~~~~F~T~p~ 136 (427)
T PLN02533 103 NDVVIGPLKPNTVYYYKC-----GGPSSTQEFSFRTPPS 136 (427)
T ss_pred EEEEeCCCCCCCEEEEEE-----CCCCCccceEEECCCC
Confidence 457899999999999999 4445578889999764
No 56
>PLN02533 probable purple acid phosphatase
Probab=74.15 E-value=26 Score=40.97 Aligned_cols=86 Identities=13% Similarity=0.080 Sum_probs=49.9
Q ss_pred CCCCCeeEEEecCCcEEEEEecCCCCCCCceEEEEEEEEEcCCCCcceeeeeeccc------c--CCCcEEEeecCCc-e
Q psy2190 847 TIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDI------D--RDSGLYLYDYPAG-S 917 (976)
Q Consensus 847 ~~p~~v~~~~~~~~~sv~l~W~~P~~~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~------~--~~~~~~l~~L~pg-~ 917 (976)
..|..+.+...+. +++.|+|.-..... . .|+|....+.......-....+ . ....+.|++|+|+ .
T Consensus 42 ~~P~qvhls~~~~-~~m~V~W~T~~~~~-~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T~ 115 (427)
T PLN02533 42 THPDQVHISLVGP-DKMRISWITQDSIP-P----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNTV 115 (427)
T ss_pred CCCceEEEEEcCC-CeEEEEEECCCCCC-C----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCCCE
Confidence 4477777777666 89999998765432 2 2555543322111110000011 0 1135789999996 9
Q ss_pred EEEEEEEEeCCCCCCCCCcEeEEEecC
Q psy2190 918 YLFRLRVVSLGGEGPWTSWKPCVIESA 944 (976)
Q Consensus 918 Y~~~V~A~t~aG~G~~S~~~~~~~~~~ 944 (976)
|..||. .+.+|+...|+++..
T Consensus 116 Y~Yrvg------~~~~s~~~~F~T~p~ 136 (427)
T PLN02533 116 YYYKCG------GPSSTQEFSFRTPPS 136 (427)
T ss_pred EEEEEC------CCCCccceEEECCCC
Confidence 999983 233567778888654
No 57
>KOG4806|consensus
Probab=72.52 E-value=28 Score=38.19 Aligned_cols=87 Identities=23% Similarity=0.363 Sum_probs=51.4
Q ss_pred eeCCccCceEEEEEEEEeCCCCCCCCeEEEecC---CCCCCCCceeEEEEe--cCcEEEEEecCCCCCCCceeEEEEEEE
Q psy2190 601 VMNLEPATEYAFFVKIYNSQRIVRSNISLQTTL---PTKPSIPYQFEVVRV--NSSSVTLRWGEPKHPHGILEKYVIKAY 675 (976)
Q Consensus 601 l~~L~P~T~Y~~~V~a~n~g~g~~S~~~~~~T~---~~~Ps~P~~l~~~~~--s~tsi~vsW~pP~~~nG~I~~Y~V~~~ 675 (976)
--.+.|+..|.++++..|...++..-.+...|. .+-|.-|++-++..+ +-++.+|.|..-.+ .=..|-| +
T Consensus 288 Qfvv~~~~~~~~rf~~~ndde~~~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d---~~~kyCI--y 362 (454)
T KOG4806|consen 288 QFVVLPGERYLMRFEPSNDDEALQKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPD---EELKYCI--Y 362 (454)
T ss_pred EEEecCCCceEEEEEecCCchhhheeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccCcc---hheeEEE--E
Confidence 345678888999998888644443333444433 346777888777665 45789999975332 1245666 3
Q ss_pred E-ecCcC--ccccccccccc
Q psy2190 676 Y-QDYDK--DYLDTRNYCVD 692 (976)
Q Consensus 676 ~-~~~~~--~~~~~~~~c~~ 692 (976)
- +.++. ......|||-+
T Consensus 363 ~~~~~~~e~~v~~~~N~C~g 382 (454)
T KOG4806|consen 363 VFNLPQRERSVVDFTNYCMG 382 (454)
T ss_pred EecccchhhhhhhhhccccC
Confidence 3 33332 22224567755
No 58
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=69.56 E-value=7.5 Score=36.39 Aligned_cols=15 Identities=27% Similarity=0.766 Sum_probs=12.4
Q ss_pred eeecCcccccccccc
Q psy2190 256 FIHDGHCLDQCPPNL 270 (976)
Q Consensus 256 ~~~~~~Cv~~Cp~~~ 270 (976)
+..++.|=..||+|+
T Consensus 37 Y~~~~~CC~kCPPGt 51 (127)
T PHA02637 37 YKRHNLCCLSCPPGT 51 (127)
T ss_pred CcCCCeEcCCCCCCC
Confidence 556888999999998
No 59
>KOG1948|consensus
Probab=61.00 E-value=1.2e+02 Score=37.52 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=20.4
Q ss_pred ccEEEEcCCccccEEEEEEEEEe
Q psy2190 790 ETSYTMVGLGHFRSIVFTISACR 812 (976)
Q Consensus 790 ~~~~~l~gL~p~T~Y~~~V~A~~ 812 (976)
.-.|.|.||.|+..|.++|.+.-
T Consensus 945 nG~yRiRGL~Pdc~Y~V~vk~~~ 967 (1165)
T KOG1948|consen 945 NGTYRIRGLLPDCEYQVHVKSYA 967 (1165)
T ss_pred CCcEEEeccCCCceEEEEEeecc
Confidence 44799999999999999999874
No 60
>PF15102 TMEM154: TMEM154 protein family
Probab=57.70 E-value=12 Score=36.05 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=15.4
Q ss_pred CCceEEEEehhhHHHHHHHHHheeeeEE
Q psy2190 946 TPMSVYVIVVVTGLVILFCMLAVILFLI 973 (976)
Q Consensus 946 ~~~~~~iii~~v~~~lll~~l~~~l~~~ 973 (976)
...++.+|++|+++++||++++++++++
T Consensus 54 q~efiLmIlIP~VLLvlLLl~vV~lv~~ 81 (146)
T PF15102_consen 54 QLEFILMILIPLVLLVLLLLSVVCLVIY 81 (146)
T ss_pred CcceEEEEeHHHHHHHHHHHHHHHheeE
Confidence 3345777778865554444444444444
No 61
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=54.15 E-value=33 Score=33.36 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=18.7
Q ss_pred CCCcEEEeecCCc-eEEEEEEEEeC
Q psy2190 904 RDSGLYLYDYPAG-SYLFRLRVVSL 927 (976)
Q Consensus 904 ~~~~~~l~~L~pg-~Y~~~V~A~t~ 927 (976)
+...|.+.+|.|| +|.|+-...+.
T Consensus 100 rlsaYqVtNL~pGTkY~isY~Vtkg 124 (184)
T PF07353_consen 100 RLSAYQVTNLQPGTKYYISYLVTKG 124 (184)
T ss_pred cceeEEeeccCCCcEEEEEEEEecC
Confidence 3447999999997 99988776543
No 62
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=54.13 E-value=24 Score=31.87 Aligned_cols=23 Identities=35% Similarity=0.778 Sum_probs=16.0
Q ss_pred cCCcccccCCCCcccCCCCCCcccCC
Q psy2190 328 FNGSCMEECPPGYNTTADETSCVPCP 353 (976)
Q Consensus 328 ~~~~Cv~~Cp~g~~~~~~~~~C~~C~ 353 (976)
.+..|. |++|||.+... .|..|.
T Consensus 73 ~dt~C~--C~~G~y~~~~~-~c~~C~ 95 (98)
T cd00185 73 RNTVCG--CKPGFYCLTKA-SCEMCV 95 (98)
T ss_pred CCCeEe--CCCCCEecCCC-CCCccc
Confidence 678896 99999976422 566554
No 63
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=54.05 E-value=13 Score=25.71 Aligned_cols=15 Identities=27% Similarity=0.404 Sum_probs=10.4
Q ss_pred CCCCCCCCcccccCC
Q psy2190 216 CEFYWSNNDCQLIKE 230 (976)
Q Consensus 216 ~~~Cw~~~~Cq~~C~ 230 (976)
+++|..+.+||++|.
T Consensus 11 cgscknneqcqkscs 25 (40)
T PF11403_consen 11 CGSCKNNEQCQKSCS 25 (40)
T ss_dssp SSTTTT-TTSTTS-S
T ss_pred cCCccChHHHhhcCC
Confidence 667888899998774
No 64
>KOG1225|consensus
Probab=53.86 E-value=17 Score=42.99 Aligned_cols=110 Identities=10% Similarity=-0.055 Sum_probs=67.3
Q ss_pred eecccEEEEcCCccccEEEEEEEEEecCccCCCCCCCCCCCCCCccceeEEecccCCCCCCCCCCeeEEEecCCcEEEEE
Q psy2190 787 LYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEVDHLADTIPADSLNFEMINASALRIR 866 (976)
Q Consensus 787 ~~~~~~~~l~gL~p~T~Y~~~V~A~~~~~~~~~~~~~~~~~g~s~~~~~~~~T~~~~~~~~~p~~v~~~~~~~~~sv~l~ 866 (976)
.+....+.+..|+|++.|.++|+|+... -.+........|.... +..+.+..... +++.+.
T Consensus 414 ~~~~~~~~~~~~~~g~~~~~~~~~v~~~-------------~~~~~~~~~~~~~~~~-----~g~~~v~~~~~-~s~e~~ 474 (525)
T KOG1225|consen 414 PGDANSVDIQGLEPGDEYNCSVNTVAAN-------------IGSLPKDKSETTVLCW-----NGGLCVDGETE-SSLEVG 474 (525)
T ss_pred ccceeeeeeeeecCCcceeeehhhhhhh-------------hccCCcccccceEeec-----CCceeeeeeee-cccccc
Confidence 4467789999999999999999998765 1112222222222211 44555555555 799999
Q ss_pred ecCCCCCCCceEEEEEEEEEcCCCCcceeeeeeccccCCCcEEEeecCCc-eEEEEE
Q psy2190 867 WHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAG-SYLFRL 922 (976)
Q Consensus 867 W~~P~~~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~pg-~Y~~~V 922 (976)
|..|... ...|.+.|.............. ...+.+...+|.|+ .|.+.+
T Consensus 475 g~~~s~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 475 GPCPSSG---TCGWEVRCGPCGNDGGVNAEPP----PECTSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred CCCCCcc---ccceEEEeeecCcccccccCCC----CCCCCCCccCcccccceeccc
Confidence 9988763 3567777733222111111111 23356888999996 888764
No 65
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=52.14 E-value=8.5 Score=42.78 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=27.9
Q ss_pred ceEEEEEEEEeCCCCCCCCCcEeEEEecCCCCceEEEEehhhHHHHHHHHH
Q psy2190 916 GSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYVIVVVTGLVILFCML 966 (976)
Q Consensus 916 g~Y~~~V~A~t~aG~G~~S~~~~~~~~~~~~~~~~~iii~~v~~~lll~~l 966 (976)
....+||+|+...+.+ |+......... ....+-|+||.++++|+|++|
T Consensus 242 ~~~~lqvQaF~~~~~~-Fg~a~~C~~D~--~~~~vPIaVG~~La~lvlivL 289 (306)
T PF01299_consen 242 NLSDLQVQAFRVKNNT-FGTAEECSSDD--TSDLVPIAVGAALAGLVLIVL 289 (306)
T ss_pred EEeEEEEEEEEecCCC-CCChhcCCcCC--ccchHHHHHHHHHHHHHHHHH
Confidence 3678899999988877 88776553222 123344445544444444333
No 66
>COG1470 Predicted membrane protein [Function unknown]
Probab=51.94 E-value=4.5e+02 Score=30.69 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=23.9
Q ss_pred cCCceEEEEEEEEeCCCCCCCCCcEeEEEecCC
Q psy2190 913 YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAE 945 (976)
Q Consensus 913 L~pg~Y~~~V~A~t~aG~G~~S~~~~~~~~~~~ 945 (976)
-.+|.|.++++|.+. .-.|+....+.+...+
T Consensus 456 a~aGdY~i~i~~ksD--q~s~e~tlrV~V~~sS 486 (513)
T COG1470 456 AGAGDYRITITAKSD--QASSEDTLRVVVGQSS 486 (513)
T ss_pred CCCCcEEEEEEEeec--cccccceEEEEEeccc
Confidence 345799999999988 5667777887777754
No 67
>KOG4228|consensus
Probab=51.62 E-value=24 Score=44.66 Aligned_cols=103 Identities=11% Similarity=0.102 Sum_probs=60.2
Q ss_pred EEeccceEEEEeeccCCCCCCCceeEEEEEEEcCCCCcccccCCCccCCCCcEEEecCCCCceEEeeCCccCceEEEEEE
Q psy2190 536 VVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVK 615 (976)
Q Consensus 536 ~vs~~si~~LsW~~~p~~~~~d~~gY~v~y~~~~~~n~t~~~~~~~c~~~~W~~~~v~~~~~~~~l~~L~P~T~Y~~~V~ 615 (976)
.....+++ +.|. .... ....|.+.++....+ ...+++.. ...+....+.|...|.+ .
T Consensus 35 ~~~~~~~~-~~~~--~~~t--~~~~y~v~~~~~~s~---------------~~~~~~~~-~~~~s~~~~~~~~~~~~--~ 91 (1087)
T KOG4228|consen 35 GSTATSWV-QAEL--LGST--WPNYYQVIFKALSSG---------------YGYIDVDL-TTRLSYPCLSPPSFLEL--V 91 (1087)
T ss_pred ccccccee-ehhh--ccCC--ChhhhheeeeEeccC---------------cceeeccc-eeecccCCCCCcchhhh--h
Confidence 34556667 7887 3322 226677777766321 12222221 34466778888888888 5
Q ss_pred EEeC-CCCCCCCeEEEecCCCCC-CCCceeEEEEecCcEEEEEecCCC
Q psy2190 616 IYNS-QRIVRSNISLQTTLPTKP-SIPYQFEVVRVNSSSVTLRWGEPK 661 (976)
Q Consensus 616 a~n~-g~g~~S~~~~~~T~~~~P-s~P~~l~~~~~s~tsi~vsW~pP~ 661 (976)
+.|. +.++.+.++.-+|.+..+ ..++...+...++....+.|.++.
T Consensus 92 evnt~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (1087)
T KOG4228|consen 92 EVNTIGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFS 139 (1087)
T ss_pred hcccccccccccccCCccccccccccccchhhhhhhhhhhccCccccc
Confidence 5555 777888877777776665 555555555555555555555443
No 68
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=51.03 E-value=12 Score=29.66 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=8.6
Q ss_pred eeccCccccccccc
Q psy2190 287 YSYMNRRCLTREEC 300 (976)
Q Consensus 287 y~~~~~~C~~~~~C 300 (976)
+...+++||...+|
T Consensus 42 v~~~~~~CV~~~~C 55 (55)
T PF01826_consen 42 VRNDNGRCVPPSEC 55 (55)
T ss_dssp EEETTSEEEEGGGC
T ss_pred eEcCCCCEEcHHHC
Confidence 55555688875444
No 69
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=49.44 E-value=1.9e+02 Score=35.96 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=36.5
Q ss_pred CceEEeeCCccCceEEEEEEEEeC--CCCCCC-CeEEEecCCCCC-CCCceeEEEEecCcEEEEEecCCC
Q psy2190 596 NKTVEVMNLEPATEYAFFVKIYNS--QRIVRS-NISLQTTLPTKP-SIPYQFEVVRVNSSSVTLRWGEPK 661 (976)
Q Consensus 596 ~~~~~l~~L~P~T~Y~~~V~a~n~--g~g~~S-~~~~~~T~~~~P-s~P~~l~~~~~s~tsi~vsW~pP~ 661 (976)
...+.+.+|-+ -+|.++|+|.|. ..+.+. ...+.-..+..| ..+.-+.+..+. -.+.+.|--|.
T Consensus 659 ~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it-~~~~l~v~dPt 726 (952)
T COG4733 659 AAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIIT-LVIRLVVGDPT 726 (952)
T ss_pred ccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEE-eeeeEEEecCC
Confidence 67899999988 799999999997 233332 222222222333 333333333332 23556676654
No 70
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=46.77 E-value=15 Score=40.37 Aligned_cols=31 Identities=35% Similarity=0.912 Sum_probs=17.9
Q ss_pred cccccCCCCcc-cC---CCCCCcccC---------CCCCCCCCc
Q psy2190 331 SCMEECPPGYN-TT---ADETSCVPC---------PDCPKVCKG 361 (976)
Q Consensus 331 ~Cv~~Cp~g~~-~~---~~~~~C~~C---------~~C~~~C~g 361 (976)
.|+..||.|-. .+ .....|..| ..|...|.+
T Consensus 169 ~Cv~ACPygAi~~n~~~~~~eKC~~C~~Rie~G~~PaCv~aCP~ 212 (321)
T TIGR03478 169 YCVEACPYKKVYFNPQSQKSEKCIGCYPRIEKGIAPACVKQCPG 212 (321)
T ss_pred HHHHhCCCCCcEecCCCCchhhCCCchhhhccCCCCHHHhhcCc
Confidence 57777776541 11 234567777 256666754
No 71
>KOG4228|consensus
Probab=45.47 E-value=30 Score=43.87 Aligned_cols=53 Identities=21% Similarity=0.159 Sum_probs=41.9
Q ss_pred EEEEeC-CCCCCCCeEEEecCCCCCCCCceeEEEEecCcEEEEEecCCCCCCCceeEEEE
Q psy2190 614 VKIYNS-QRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVI 672 (976)
Q Consensus 614 V~a~n~-g~g~~S~~~~~~T~~~~Ps~P~~l~~~~~s~tsi~vsW~pP~~~nG~I~~Y~V 672 (976)
+.+.+. +.++++..+..+|.+..|..|. ...+.++++++|.+|. .+.+..|++
T Consensus 144 ~~~~~~~~~~~~~t~i~i~~~~~~p~~~~----~~~~~~~it~~w~~~~--~~~~~~ykl 197 (1087)
T KOG4228|consen 144 PLAIASPGLGPPSTYIQITTNANSPIQPG----EEEEYTTITGSWSPPH--AVSLDTYKL 197 (1087)
T ss_pred ccccCCcccCCCCceEEEeccCCCCCCCC----cceEEEEEEecCCCCC--cccchhhhh
Confidence 555655 6666688889999999997666 6778899999999875 357888888
No 72
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=42.85 E-value=17 Score=37.41 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=14.6
Q ss_pred cCCCCcccc--cCCcccccCCCCc
Q psy2190 319 YSDKAKWRP--FNGSCMEECPPGY 340 (976)
Q Consensus 319 C~~c~~~~~--~~~~Cv~~Cp~g~ 340 (976)
|+.|.+... ....||+.||.|-
T Consensus 129 Ct~C~~ri~~g~~PaCV~~CP~~A 152 (203)
T COG0437 129 CTFCVDRVAVGKLPACVEACPTGA 152 (203)
T ss_pred cCcchhhHhcCCCCcccccCCccc
Confidence 777766532 2358999999654
No 73
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=39.48 E-value=1.5e+02 Score=23.96 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=22.8
Q ss_pred CCcEEEecCCCCceEEeeCCccCceEEEEEEEEeC
Q psy2190 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619 (976)
Q Consensus 585 ~~W~~~~v~~~~~~~~l~~L~P~T~Y~~~V~a~n~ 619 (976)
+.|...... ...+.+++|.|| .|.|.|+|.+.
T Consensus 19 ~~W~~~~~~--~~~~~~~~L~~G-~Y~l~V~a~~~ 50 (66)
T PF07495_consen 19 DEWITLGSY--SNSISYTNLPPG-KYTLEVRAKDN 50 (66)
T ss_dssp SSEEEESST--S-EEEEES--SE-EEEEEEEEEET
T ss_pred CeEEECCCC--cEEEEEEeCCCE-EEEEEEEEECC
Confidence 568775543 228999999887 69999999986
No 74
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=39.22 E-value=52 Score=27.84 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=17.8
Q ss_pred EeEEEecCCCCceEEEEehhhHHHHHHHHHheeee
Q psy2190 937 KPCVIESAETPMSVYVIVVVTGLVILFCMLAVILF 971 (976)
Q Consensus 937 ~~~~~~~~~~~~~~~iii~~v~~~lll~~l~~~l~ 971 (976)
+.+.+.+.++...+.++++|+++++.+++++.+++
T Consensus 18 ivv~vd~~~~~~~avaVviPl~L~LCiLvl~yai~ 52 (74)
T PF11857_consen 18 IVVEVDDGGGTVNAVAVVIPLVLLLCILVLIYAIF 52 (74)
T ss_pred EEEEEccCCCceeEEEEeHHHHHHHHHHHHHHHhh
Confidence 34444433333455566667666555555544444
No 75
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=39.09 E-value=13 Score=44.16 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=17.9
Q ss_pred ceEEEEehhhHHHHHHHHHheeeeEEEc
Q psy2190 948 MSVYVIVVVTGLVILFCMLAVILFLILG 975 (976)
Q Consensus 948 ~~~~iii~~v~~~lll~~l~~~l~~~~~ 975 (976)
..+|||+|+++-++++++|++++||.++
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~~LC 294 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYWKLC 294 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHHHHh
Confidence 3577777776656666666666666543
No 76
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=38.87 E-value=2.9e+02 Score=24.71 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCeeEEEecCCcEEEEEecCCCCCCCceEEEEEEEEEcCCCCcceeeeeecccc-CCCcEEEeecCC--c---eEEEEEE
Q psy2190 850 ADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDID-RDSGLYLYDYPA--G---SYLFRLR 923 (976)
Q Consensus 850 ~~v~~~~~~~~~sv~l~W~~P~~~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~-~~~~~~l~~L~p--g---~Y~~~V~ 923 (976)
.++.-...+. ..+.=+|.+-..+- .-+.|.++|+..... ....|....... ...+..+..+.. . .|.|.|.
T Consensus 3 ~nlsC~~~~~-~~m~CtW~~g~~~~-~~t~y~L~~~~~~~~-~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~ 79 (99)
T PF09240_consen 3 QNLSCFIYNL-EYMNCTWEPGKEAP-PDTQYTLYYWYSPLE-EEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVN 79 (99)
T ss_dssp EEEEEEEETT-TEEEEEEECCTTCS-TTEEEEEEEEETTSS-SEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEE
T ss_pred eeCEEEEECC-EEEEEEECCCCCCC-CcccEEEEEEcCCCC-ccccCCCccccCCceeEEEecCCCccccccceEEEEEE
Confidence 3455444455 78999998644322 236899999987654 555575543221 234677776666 3 7999999
Q ss_pred EEeCCCC
Q psy2190 924 VVSLGGE 930 (976)
Q Consensus 924 A~t~aG~ 930 (976)
+.+.+|.
T Consensus 80 ~ss~~~~ 86 (99)
T PF09240_consen 80 GSSSAGS 86 (99)
T ss_dssp EEETTEE
T ss_pred eccCCCc
Confidence 9998873
No 77
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=38.79 E-value=42 Score=39.58 Aligned_cols=49 Identities=22% Similarity=0.235 Sum_probs=23.5
Q ss_pred ceEEeeCCccCceEEEEEEEEeCCCCCCCCeEEEecCCCCCCCCceeEEEEec
Q psy2190 597 KTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVN 649 (976)
Q Consensus 597 ~~~~l~~L~P~T~Y~~~V~a~n~g~g~~S~~~~~~T~~~~Ps~P~~l~~~~~s 649 (976)
..+.|++|+|+|.|.|+|..- +.+..|.+-.++|.+. ..+..++....+
T Consensus 64 ~~v~v~gL~p~t~Y~Y~~~~~--~~~~~s~~g~~rT~p~--~~~~~~r~a~~S 112 (453)
T PF09423_consen 64 VKVDVTGLQPGTRYYYRFVVD--GGGQTSPVGRFRTAPD--GDPDPFRFAFGS 112 (453)
T ss_dssp EEEEE-S--TT-EEEEEEEE----TTEE---EEEE--TT-------EEEEEE-
T ss_pred eecccCCCCCCceEEEEEEEe--cCCCCCCceEEEcCCC--CCCCceEEEEEC
Confidence 457899999999999999883 3467777888999832 223335444433
No 78
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=38.01 E-value=25 Score=40.53 Aligned_cols=18 Identities=28% Similarity=0.881 Sum_probs=11.9
Q ss_pred ccccccceeecCcccccccccc
Q psy2190 249 DCFVCIGFIHDGHCLDQCPPNL 270 (976)
Q Consensus 249 ~C~~C~~~~~~~~Cv~~Cp~~~ 270 (976)
.|..|. +..|+..||.+-
T Consensus 182 ~C~HC~----nP~CV~ACPtGA 199 (492)
T TIGR01660 182 LCEHCL----NPACVASCPSGA 199 (492)
T ss_pred cCcCCC----cccchhhCccCC
Confidence 455453 356888998775
No 79
>KOG0613|consensus
Probab=37.89 E-value=4.9e+02 Score=34.22 Aligned_cols=135 Identities=12% Similarity=0.045 Sum_probs=67.3
Q ss_pred EEEcCCccccEEEEEEEEEecCccCCCCCCCCCCCCCCccceeEEecccCCCCCCCCCCeeEEEecCCcEEEEEecCCCC
Q psy2190 793 YTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSR 872 (976)
Q Consensus 793 ~~l~gL~p~T~Y~~~V~A~~~~~~~~~~~~~~~~~g~s~~~~~~~~T~~~~~~~~~p~~v~~~~~~~~~sv~l~W~~P~~ 872 (976)
++.---.++-.|.+.|.+.-.. +............+.+.+ ..+...+....+...+. +.+.+.|.-+..
T Consensus 293 ~t~~~~~~~~q~~~~v~~~~~i---------~~~~~~p~~~~~aaa~~~-~~~v~~~~~~~v~a~d~-~~v~m~~~~~~~ 361 (1205)
T KOG0613|consen 293 WTVADKRQGCQDRFKVTEEAPI---------GKGKPGPESLQAAAARPP-EVPVGLVRNLSVTARDN-TLVEMPTALSGT 361 (1205)
T ss_pred eeeecccCCcccceeeeEEeec---------cccccCchhhhhhccCCc-cccccccccceeccccC-cceeecccccCC
Confidence 4444455666777777766655 222111112122222222 11222223333333344 688888876554
Q ss_pred --CCCceEEEEEEEEEcCCCCcceeeeeeccccCCCcEEEeecCCc-eEEEEEEEEeCCCCCCCCCcEeEEEe
Q psy2190 873 --PNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAG-SYLFRLRVVSLGGEGPWTSWKPCVIE 942 (976)
Q Consensus 873 --~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~pg-~Y~~~V~A~t~aG~G~~S~~~~~~~~ 942 (976)
+++ ..+|.+.-.......+ ..+.... ...+.+.+.++-++ .|..++.|.+.+|.-...+...+...
T Consensus 362 ~~p~~-~~~~~~~~~~~~~~~~-~~~~~~~--~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~ 430 (1205)
T KOG0613|consen 362 QKPDE-AQGYHGEEVSSESLGA-LPCPVGT--VTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEE 430 (1205)
T ss_pred cCCch-heeecccccccccccc-ccccccc--ccCcchhhhhcCcccccccccceeccCCcccccchhhcccc
Confidence 333 2334333211112112 2222221 22346778899998 99999999999997655555444433
No 80
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=37.86 E-value=11 Score=21.62 Aligned_cols=10 Identities=40% Similarity=1.328 Sum_probs=7.9
Q ss_pred Cccccccccc
Q psy2190 260 GHCLDQCPPN 269 (976)
Q Consensus 260 ~~Cv~~Cp~~ 269 (976)
+.|++.||.+
T Consensus 5 ~~C~~~Cp~~ 14 (15)
T PF12798_consen 5 GACVEVCPTG 14 (15)
T ss_pred hHHHHHhcCC
Confidence 7788888864
No 81
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=37.86 E-value=70 Score=25.31 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=25.8
Q ss_pred cEEEeecCCceEEEEEEEEeCCCCCCCCCcEeEEE
Q psy2190 907 GLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVI 941 (976)
Q Consensus 907 ~~~l~~L~pg~Y~~~V~A~t~aG~G~~S~~~~~~~ 941 (976)
++.+..+..|.|.|+|.|.-.||+-.......|.+
T Consensus 15 s~t~~~~~dG~y~itv~a~D~AGN~s~~~~~~~ti 49 (54)
T PF13754_consen 15 SFTVPALADGTYTITVTATDAAGNTSTSSSVTFTI 49 (54)
T ss_pred EEeCCCCCCccEEEEEEEEeCCCCCCCccceeEEE
Confidence 35556664589999999999999876555555655
No 82
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=37.58 E-value=99 Score=37.71 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=53.6
Q ss_pred eeeeE-EEeccceEEEEeeccCCCCCCCceeEEEEEEEcCCCCcccccCCCccCCCCcEEEecCCCCceEEeeCCccCce
Q psy2190 531 SNLAL-VVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATE 609 (976)
Q Consensus 531 ~~L~v-~vs~~si~~LsW~~~p~~~~~d~~gY~v~y~~~~~~n~t~~~~~~~c~~~~W~~~~v~~~~~~~~l~~L~P~T~ 609 (976)
..|.+ ..++.-+. |+|+ .. +...-|.|++.++...+-.... -..-.|....... +....-..|.|.|.
T Consensus 9 tslrI~kLsaN~v~-l~Wd--dV---G~NFyY~Ve~a~t~~~~g~~ip----~~~~~w~nlg~T~-~~~wFed~~~p~t~ 77 (1030)
T PHA02579 9 TSLRIDKLSANQVY-LTWD--DV---GANFYYFVELAETRDADGELIP----DDELRWINLGYTA-NNEWFEDKLQPNTY 77 (1030)
T ss_pred cEEEhhhhccceEE-EEee--cc---CCceEEEEEEEeeccCCCccCC----CccccceecCccc-chhhhhhccCCcce
Confidence 45666 77888899 9999 22 2227889999876433211000 0234577655554 33333344999999
Q ss_pred EEEEEEEEeCCCCCCCCeEE
Q psy2190 610 YAFFVKIYNSQRIVRSNISL 629 (976)
Q Consensus 610 Y~~~V~a~n~g~g~~S~~~~ 629 (976)
|.|||+.... +-.+|++++
T Consensus 78 Yk~Rv~~~~q-GFe~SdWv~ 96 (1030)
T PHA02579 78 YKFRVAVAAQ-GFEQSDWVY 96 (1030)
T ss_pred EEEEEEeecc-CCCccccEE
Confidence 9999988653 335666653
No 83
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=36.87 E-value=1.8e+02 Score=26.55 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=45.8
Q ss_pred ceeeeE-EEeccceEEEEeeccCCCCCCCc-eeEEEEEEEcCCCCcccccCCCccCCCCcEEEec--CCCCc-------e
Q psy2190 530 FSNLAL-VVLNKTDVSIRFQLNENEKVPDN-QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDI--NSKNK-------T 598 (976)
Q Consensus 530 ~~~L~v-~vs~~si~~LsW~~~p~~~~~d~-~gY~v~y~~~~~~n~t~~~~~~~c~~~~W~~~~v--~~~~~-------~ 598 (976)
++.+.. .-....+. -.|+ +... ... ..|.+.|.... ..|+.=.. ..... .
T Consensus 11 P~~~~C~S~~~etft-C~W~--~g~~-~~l~~~y~L~Y~~~~---------------~~~~eCp~~~~~~~ns~~~~~C~ 71 (104)
T PF09067_consen 11 PENLKCFSREMETFT-CFWE--PGSE-GNLPTNYTLFYKKEG---------------EEWKECPDYSTSGPNSTVRHICY 71 (104)
T ss_dssp CEEEEEEBSSSS-EE-EEEE--EESS-STSTCEEEEEEEETT---------------SEEEEESESSTTETTEEEEEEEE
T ss_pred CccCccCCCCCCcEE-EEee--CCCC-CCCCCcEEEEEEeCC---------------CCCccCCCeEecCCCCceeEEEE
Confidence 445555 44556677 8999 4433 222 55999999762 22222111 10012 2
Q ss_pred EEeeCCccCceEEEEEEEEeCCCCCCCCeEE
Q psy2190 599 VEVMNLEPATEYAFFVKIYNSQRIVRSNISL 629 (976)
Q Consensus 599 ~~l~~L~P~T~Y~~~V~a~n~g~g~~S~~~~ 629 (976)
+.-.+..-++.|.++|+|.+..+...|+.+.
T Consensus 72 F~~~~t~lf~~y~i~V~a~~~~~~~~s~~l~ 102 (104)
T PF09067_consen 72 FPKSDTSLFVPYCIQVEATNALGSITSRVLY 102 (104)
T ss_dssp E-CCGCSSSSEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCeEEEEEEEEEEEeccCCCcEEeeEEE
Confidence 3334789999999999999875445554443
No 84
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=36.29 E-value=1.2e+02 Score=27.66 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=47.5
Q ss_pred CCCeeEEEecCCcEEEEEecCCCCCCCceEEEEEEEEEcCCCCcceeeeeeccccCCCc-----EEEe--ecCC-ceEEE
Q psy2190 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSG-----LYLY--DYPA-GSYLF 920 (976)
Q Consensus 849 p~~v~~~~~~~~~sv~l~W~~P~~~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~-----~~l~--~L~p-g~Y~~ 920 (976)
|..+.-...+. ..+.=.|++....|.. ..|.+.|.... . ....|...... ...+ ..+. +..- ..|.|
T Consensus 11 P~~~~C~S~~~-etftC~W~~g~~~~l~-~~y~L~Y~~~~-~-~~~eCp~~~~~-~~ns~~~~~C~F~~~~t~lf~~y~i 85 (104)
T PF09067_consen 11 PENLKCFSREM-ETFTCFWEPGSEGNLP-TNYTLFYKKEG-E-EWKECPDYSTS-GPNSTVRHICYFPKSDTSLFVPYCI 85 (104)
T ss_dssp CEEEEEEBSSS-S-EEEEEEEESSSTST-CEEEEEEEETT-S-EEEEESESSTT-ETTEEEEEEEEE-CCGCSSSSEEEE
T ss_pred CccCccCCCCC-CcEEEEeeCCCCCCCC-CcEEEEEEeCC-C-CCccCCCeEec-CCCCceeEEEEcCCCCeEEEEEEEE
Confidence 44454444444 7899999998876644 34999999877 2 55566433221 1123 4454 3344 59999
Q ss_pred EEEEEeCCC
Q psy2190 921 RLRVVSLGG 929 (976)
Q Consensus 921 ~V~A~t~aG 929 (976)
+|.|.+..|
T Consensus 86 ~V~a~~~~~ 94 (104)
T PF09067_consen 86 QVEATNALG 94 (104)
T ss_dssp EEEEEETTE
T ss_pred EEEeccCCC
Confidence 999999877
No 85
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=35.87 E-value=2.6e+02 Score=26.81 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=42.8
Q ss_pred cEEEEEecCCCCCCCceEEEEEEEEEcCCCCcceeeeeeccccCCCcEEEeecCCceEEEEEEEEeCCCCCCCCCcEeEE
Q psy2190 861 SALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCV 940 (976)
Q Consensus 861 ~sv~l~W~~P~~~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~pg~Y~~~V~A~t~aG~G~~S~~~~~~ 940 (976)
-.|.|+|.-=.-.+| ..|+|.. ++. .+. +... ...+...+..-++|+|.++|...+..|.. .|.++.+.
T Consensus 38 v~V~VtwN~WsG~~G--d~~kly~---dG~---~V~-tG~~-~~~~~a~~~~~~gG~y~~~VeLCN~~GCS-~S~~~~V~ 106 (133)
T PF08329_consen 38 VDVSVTWNVWSGTNG--DTAKLYF---DGV---LVW-TGPS-PQQKSATFTVTKGGRYQMQVELCNADGCS-TSAPVEVV 106 (133)
T ss_dssp EEEEEEEE-SSS-----SEEEEEE---TTE---EEE-EEE---SEEEEEEEE-S-EEEEEEEEEEETTEEE-E---EEEE
T ss_pred eEEEEEEEEecCCCC--CEEEEEE---CCE---EEE-eCCC-ccCceEEEEecCCCEEEEEEEEECCCCcc-cCCCEEEE
Confidence 588999986655455 3566653 111 111 1111 12334567777778999999999999966 47788888
Q ss_pred EecCCCCc
Q psy2190 941 IESAETPM 948 (976)
Q Consensus 941 ~~~~~~~~ 948 (976)
+.+.++..
T Consensus 107 VaDTDGsH 114 (133)
T PF08329_consen 107 VADTDGSH 114 (133)
T ss_dssp EE-TTSTT
T ss_pred EeCCCccc
Confidence 88887443
No 86
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=34.48 E-value=14 Score=42.92 Aligned_cols=31 Identities=26% Similarity=0.813 Sum_probs=21.9
Q ss_pred cccccCCCCcccC-CCCCCcccCCCCCCCCCc
Q psy2190 331 SCMEECPPGYNTT-ADETSCVPCPDCPKVCKG 361 (976)
Q Consensus 331 ~Cv~~Cp~g~~~~-~~~~~C~~C~~C~~~C~g 361 (976)
.|+..||.|...+ .....|..|..|...|..
T Consensus 238 ~Cv~vCP~gi~~~~~~~~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 238 LCVQVCPTGIDIRDGLQLECINCGLCIDACDD 269 (434)
T ss_pred hhHHhCCCCCEeCCCCchhChhhhHHHHhCCC
Confidence 5999999985322 234578888877777763
No 87
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=34.29 E-value=1.4e+02 Score=25.23 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=34.7
Q ss_pred cEEEEEecCCCCCCCceEEEEEEEEEcCCCCcceeeeeeccccCCCcEEEeecCCceEEEEEEEEeCCCCC
Q psy2190 861 SALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEG 931 (976)
Q Consensus 861 ~sv~l~W~~P~~~NG~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~pg~Y~~~V~A~t~aG~G 931 (976)
..+.+.+..+.. |.+..|...+...... . .........-.++|.|.|+|++.+..|..
T Consensus 15 ~~v~~~~~~~~~--~~~~~~~W~fgdg~~~--~---------~~~~~~~~~y~~~G~y~v~l~v~d~~g~~ 72 (81)
T cd00146 15 ASVTFSASDSSG--GSIVSYKWDFGDGEVS--S---------SGEPTVTHTYTKPGTYTVTLTVTNAVGSS 72 (81)
T ss_pred ccEEEEEEeCCC--CCEEEEEEEeCCCCcc--c---------cCCCceEEEcCCCcEEEEEEEEEeCCCCE
Confidence 467777766544 5566777655322010 0 00023445566889999999999987644
No 88
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=33.54 E-value=80 Score=23.56 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=15.5
Q ss_pred CCceEEEEEEEEeCCCCCC-CCCcE
Q psy2190 914 PAGSYLFRLRVVSLGGEGP-WTSWK 937 (976)
Q Consensus 914 ~pg~Y~~~V~A~t~aG~G~-~S~~~ 937 (976)
+||.|.+.++|......|. .|.+.
T Consensus 11 ~PG~Y~l~~~a~~~~~~G~~~s~~~ 35 (41)
T TIGR03769 11 KPGTYTLTVQATATLTDGKVSSDPQ 35 (41)
T ss_pred CCeEEEEEEEEEEEeCCCcEecCCE
Confidence 6899999999965333343 34443
No 89
>KOG1948|consensus
Probab=33.44 E-value=1.1e+03 Score=29.87 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.7
Q ss_pred CceEEeeCCccCceEEEEEEEE
Q psy2190 596 NKTVEVMNLEPATEYAFFVKIY 617 (976)
Q Consensus 596 ~~~~~l~~L~P~T~Y~~~V~a~ 617 (976)
+..|.|.||.|++.|.++|.++
T Consensus 945 nG~yRiRGL~Pdc~Y~V~vk~~ 966 (1165)
T KOG1948|consen 945 NGTYRIRGLLPDCEYQVHVKSY 966 (1165)
T ss_pred CCcEEEeccCCCceEEEEEeec
Confidence 6789999999999999999997
No 90
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=33.32 E-value=1.3e+02 Score=38.33 Aligned_cols=38 Identities=26% Similarity=0.535 Sum_probs=30.4
Q ss_pred CCCCCceeEEEEecCcEEEEEecCCCC--CCCceeEEEEEEEE
Q psy2190 636 KPSIPYQFEVVRVNSSSVTLRWGEPKH--PHGILEKYVIKAYY 676 (976)
Q Consensus 636 ~Ps~P~~l~~~~~s~tsi~vsW~pP~~--~nG~I~~Y~V~~~~ 676 (976)
+|+...+|++. .....|.|+|..|-. ..|...+|.| +|
T Consensus 755 PP~rItDL~~~-~~~~~v~LsWTAPG~d~D~G~a~~y~i--r~ 794 (863)
T TIGR00868 755 PPSKITDLEAG-FQGDNIILTWTAPGDVLDHGRADRYII--RI 794 (863)
T ss_pred CCccceeeEEe-ecCCEEEEEeeCCCccCCCCccceEEE--Ee
Confidence 55777888874 455559999999985 7889999999 77
No 91
>PF00020 TNFR_c6: TNFR/NGFR cysteine-rich region; InterPro: IPR001368 A number of proteins, some of which are known to be receptors for growth factors have been found to contain a cysteine-rich domain at the N-terminal region that can be subdivided into four (or in some cases, three) repeats containing six conserved cysteines all of which are involved in intrachain disulphide bonds []. CD27 (also called S152 or T14) mediates a co-stimulatory signal for T and B cell activation and is involved in murine T cell development. Tyrosine-phosphorylation of ZAP-70 following CD27 ligation of T cells has been reported [], but not confirmed independently. CD30 was originally identified as Ki-1, an antigen expressed on Reed-Sternberg cells in Hodgkin's lymphomas and other non-Hodgkin's lymphomas, particularly diffuse large-cell lymphoma and immunoblastic lymphoma. CD30 has pleiotropic effects on CD30-positive lymphoma cell lines ranging from cell proliferation to cell death. It is thought to be involved in negative selection of T-cells in the thymus and is involved in TCR-mediated cell death. CD30 is a member of the TNFR family of molecules, activate NFkB through interaction with TRAF2 and TRAF5. CD40 (Bp50) plays a central role in the regulation of cell-mediated immunity as well as antibody mediated immunity. It is central to T cell dependent (TD)-responses and may influence survival of B cell lymphomas. CD95 (also called APO-1, fas antigen, Fas tumour necrosis factor receptor superfamily, member 6, TNFRSF6 or apoptosis antigen 1, APT1) is expressed, typically at high levels, on activated T and B cells. It is involved in the mediation of apoptosis-inducing signals. Other proteins known to belong to this family [, , , ] are, tumour Necrosis Factor type I and type II receptors (TNFR), Rabbit fibroma virus soluble TNF receptor (protein T2), lymphotoxin alpha/beta receptor, low-affinity nerve growth factor receptor (LA-NGFR) (p75), T-cell antigen OX40, Wsl-1, a receptor (for a yet undefined ligand) that mediates apoptosis and Vaccinia virus protein A53 (SalF19R). CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/).; GO: 0005488 binding; PDB: 3TJE_F 3QD6_S 3ALQ_U 3IJ2_Y 3BUK_D 1SG1_X 1NCF_B 1EXT_A 1FT4_B 1TNR_R ....
Probab=33.17 E-value=14 Score=26.95 Aligned_cols=22 Identities=41% Similarity=1.309 Sum_probs=14.9
Q ss_pred CCCCcccCC-CCCCcccCCCCCC
Q psy2190 336 CPPGYNTTA-DETSCVPCPDCPK 357 (976)
Q Consensus 336 Cp~g~~~~~-~~~~C~~C~~C~~ 357 (976)
||+|+|.+. ....|.+|..|+.
T Consensus 1 C~~g~y~~~~~~~~C~~C~~C~~ 23 (39)
T PF00020_consen 1 CPPGTYSDSENHPQCLPCSRCPP 23 (39)
T ss_dssp ECTTEEEESSCSSSEEEEESBTT
T ss_pred CccCcccCCCCCCcCCccCCcCc
Confidence 788888763 3378887766654
No 92
>smart00208 TNFR Tumor necrosis factor receptor / nerve growth factor receptor repeats. Repeats in growth factor receptors that are involved in growth factor binding. TNF/TNFR
Probab=32.79 E-value=35 Score=24.69 Aligned_cols=22 Identities=32% Similarity=0.913 Sum_probs=14.1
Q ss_pred CCCCcccCCCC-CCcccCCCCCC
Q psy2190 336 CPPGYNTTADE-TSCVPCPDCPK 357 (976)
Q Consensus 336 Cp~g~~~~~~~-~~C~~C~~C~~ 357 (976)
||.|+|.+..+ ..|.+|..|..
T Consensus 1 C~~g~y~~~~~~~~C~~C~~C~~ 23 (39)
T smart00208 1 CKEGTYCSDGNHSSCLRCRRCPP 23 (39)
T ss_pred CCCCeecCCCCCccCccCCCCCC
Confidence 77888765333 67777666654
No 93
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=32.12 E-value=29 Score=26.66 Aligned_cols=22 Identities=45% Similarity=1.159 Sum_probs=14.8
Q ss_pred cccccCCCCcccC-CCCCCcccCC
Q psy2190 331 SCMEECPPGYNTT-ADETSCVPCP 353 (976)
Q Consensus 331 ~Cv~~Cp~g~~~~-~~~~~C~~C~ 353 (976)
.|+ .||.|+|.+ .....|.+|.
T Consensus 10 ~C~-~Cp~GtYq~~~g~~~C~~Cp 32 (48)
T PF07699_consen 10 KCQ-PCPKGTYQDEEGQTSCTPCP 32 (48)
T ss_pred ccC-CCCCCccCCccCCccCccCc
Confidence 444 588888876 3456788766
No 94
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=32.11 E-value=1.8e+02 Score=28.44 Aligned_cols=40 Identities=25% Similarity=0.232 Sum_probs=25.8
Q ss_pred CceEEeeCCccCceEEEEEEEEeCCCCCCCCeEEEecCCC
Q psy2190 596 NKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPT 635 (976)
Q Consensus 596 ~~~~~l~~L~P~T~Y~~~V~a~n~g~g~~S~~~~~~T~~~ 635 (976)
...|.+++|.|+|.|.|.-...+......|..+...|.+.
T Consensus 101 lsaYqVtNL~pGTkY~isY~VtkgtstESS~~i~msT~n~ 140 (184)
T PF07353_consen 101 LSAYQVTNLQPGTKYYISYLVTKGTSTESSNEIPMSTLNR 140 (184)
T ss_pred ceeEEeeccCCCcEEEEEEEEecCccceecceeccccccc
Confidence 4569999999999999876554432223344455555443
No 95
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=32.05 E-value=36 Score=36.38 Aligned_cols=19 Identities=26% Similarity=0.665 Sum_probs=12.0
Q ss_pred CccccccceeecCcccccccccc
Q psy2190 248 EDCFVCIGFIHDGHCLDQCPPNL 270 (976)
Q Consensus 248 ~~C~~C~~~~~~~~Cv~~Cp~~~ 270 (976)
..|..|. +..|+..||.+-
T Consensus 98 ~~C~~C~----~p~Cv~~CP~~A 116 (244)
T PRK14993 98 RLCNHCD----NPPCVPVCPVQA 116 (244)
T ss_pred hhcCCcC----CccCccccCCCC
Confidence 3555554 346888998765
No 96
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=30.94 E-value=32 Score=34.87 Aligned_cols=20 Identities=35% Similarity=0.222 Sum_probs=9.2
Q ss_pred eEEEEehhhHHHHHHHHHhe
Q psy2190 949 SVYVIVVVTGLVILFCMLAV 968 (976)
Q Consensus 949 ~~~iii~~v~~~lll~~l~~ 968 (976)
.+++++++|+++++|+++++
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv 96 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIV 96 (179)
T ss_pred eeeeeeehhhHHHHHHHhHh
Confidence 34455555554444433333
No 97
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=30.20 E-value=16 Score=32.82 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=27.5
Q ss_pred CCeeeccCCCCceecCCCCCCCCCCCCCCCCceecCCCCcccccCc
Q psy2190 22 NGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFDQTKEKVCTDI 67 (976)
Q Consensus 22 ~~~C~~~Cp~~~~~~~~~~~~~~~~~~~~~~c~~c~~~c~k~C~~~ 67 (976)
...|+..||.+=+..+.++.+... ...|.-| |.|..+|...
T Consensus 36 ~k~C~~aCPagA~~~~e~G~V~vd----~e~CigC-g~C~~~C~~~ 76 (95)
T PRK15449 36 LELLVKACPAGLYKKQDDGSVRFD----YAGCLEC-GTCRILGLGS 76 (95)
T ss_pred hhHHHHHCCHhhcEeCCCCCEEEc----CCCCCcc-hhhhhhcCCC
Confidence 347999999987755444443322 2458888 5789999544
No 98
>KOG1378|consensus
Probab=29.95 E-value=2.8e+02 Score=32.24 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=54.5
Q ss_pred CCCeeEEEecCCcEEEEEecCCCCCCCceEEEEEEEEEcC----CCCcceeeeeecc----ccCCCcEEEeecCCc-eEE
Q psy2190 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRES----GGNSENMCRTRKD----IDRDSGLYLYDYPAG-SYL 919 (976)
Q Consensus 849 p~~v~~~~~~~~~sv~l~W~~P~~~NG~I~~Y~I~y~~~~----~~~~~~~~v~~~~----~~~~~~~~l~~L~pg-~Y~ 919 (976)
|..+.+........+.|+|--+.... .++.|-..-...+ ......++-.... ......+.+++|+|+ .|.
T Consensus 45 peQvhlS~~~~~~~m~VswvT~~~~~-~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~~~~~sg~ih~~~~~~L~~~t~Yy 123 (452)
T KOG1378|consen 45 PEQVHLSFTDNLNEMRVSWVTGDGEE-NVVRYGEVKDKLDNSAARGMTEAWTDGYANGWRDSGYIHDAVMKNLEPNTRYY 123 (452)
T ss_pred CCeEEEeccCCCCcEEEEEeCCCCCC-ceEEEeecCCCccccccccceEEEecccccccceeeeEeeeeecCCCCCceEE
Confidence 55666555444258999998776533 3455543311111 0001111111111 011225788999995 999
Q ss_pred EEEEEEeCCCCCCCCCcEeEEEecCCCCceEEEEeh
Q psy2190 920 FRLRVVSLGGEGPWTSWKPCVIESAETPMSVYVIVV 955 (976)
Q Consensus 920 ~~V~A~t~aG~G~~S~~~~~~~~~~~~~~~~~iii~ 955 (976)
.+|-+ .+.||+...|++++++......+++|
T Consensus 124 Y~~Gs-----~~~wS~~f~F~t~p~~~~~~~~~i~G 154 (452)
T KOG1378|consen 124 YQVGS-----DLKWSEIFSFKTPPGQDSPTRAAIFG 154 (452)
T ss_pred EEeCC-----CCCcccceEeECCCCccCceeEEEEc
Confidence 99933 33389999999988443333344444
No 99
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=29.65 E-value=48 Score=31.22 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=22.8
Q ss_pred eeeeCCeeeccCCCCceecCCCCCCCCCCCCCCCCceecC
Q psy2190 18 WRPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFD 57 (976)
Q Consensus 18 ~~~~~~~C~~~Cp~~~~~~~~~~~~~~~~~~~~~~c~~c~ 57 (976)
| ..++.|=..||+|+.... .|.......|.+|.
T Consensus 37 Y-~~~~~CC~kCPPGt~v~~------~Ct~~t~T~C~PCp 69 (127)
T PHA02637 37 Y-KRHNLCCLSCPPGTYASR------LCDIKTNTQCTPCG 69 (127)
T ss_pred C-cCCCeEcCCCCCCCEEeC------cCCCCCCcccccCC
Confidence 5 456789999999997654 24444445677775
No 100
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=27.73 E-value=38 Score=22.11 Aligned_cols=16 Identities=50% Similarity=1.207 Sum_probs=11.5
Q ss_pred cCCCCcccCCCCCCcc
Q psy2190 335 ECPPGYNTTADETSCV 350 (976)
Q Consensus 335 ~Cp~g~~~~~~~~~C~ 350 (976)
.||.||......+.|+
T Consensus 5 ~C~~Gy~l~~d~~~C~ 20 (24)
T PF12662_consen 5 SCPPGYQLSPDGRSCE 20 (24)
T ss_pred eCCCCCcCCCCCCccc
Confidence 5999998765556664
No 101
>PF14292 SusE: SusE outer membrane protein
Probab=26.77 E-value=4.2e+02 Score=24.68 Aligned_cols=28 Identities=14% Similarity=0.470 Sum_probs=22.2
Q ss_pred cEEEEEecCCCCCCC-ceEEEEEEEEEcC
Q psy2190 861 SALRIRWHPPSRPNG-IIVAYNIEYKRES 888 (976)
Q Consensus 861 ~sv~l~W~~P~~~NG-~I~~Y~I~y~~~~ 888 (976)
..+.++|.+|..... ..+.|.|+....+
T Consensus 45 ~a~tftW~~~~~~~~~a~v~Y~lq~~~~~ 73 (122)
T PF14292_consen 45 NAVTFTWTAADYGGPDAPVTYTLQFDKKG 73 (122)
T ss_pred ceEEEEEECCccCCCCCceEEEEEEeccC
Confidence 689999999987544 6778999987644
No 102
>PHA02714 CD-30-like protein; Provisional
Probab=25.55 E-value=42 Score=29.66 Aligned_cols=23 Identities=26% Similarity=0.839 Sum_probs=18.7
Q ss_pred ccCCCCcccCCCCCCcccCCCCC
Q psy2190 334 EECPPGYNTTADETSCVPCPDCP 356 (976)
Q Consensus 334 ~~Cp~g~~~~~~~~~C~~C~~C~ 356 (976)
.+||.+||.|++.+.|.+|-.|.
T Consensus 22 kqC~~dYY~Dpe~g~CtACVtC~ 44 (110)
T PHA02714 22 KTCPKDYYLEPEDGLCTACVTCL 44 (110)
T ss_pred ccCCCcccccCCCCceeeecccC
Confidence 57899999988888998876664
No 103
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=25.27 E-value=1.6e+02 Score=26.39 Aligned_cols=27 Identities=33% Similarity=0.864 Sum_probs=18.0
Q ss_pred CCcccccCCCCcccCCC--CCCcccCCCCC
Q psy2190 329 NGSCMEECPPGYNTTAD--ETSCVPCPDCP 356 (976)
Q Consensus 329 ~~~Cv~~Cp~g~~~~~~--~~~C~~C~~C~ 356 (976)
+..|. .||.|+|.+.. ...|++|..|.
T Consensus 32 ~t~C~-~C~~g~ys~~~~~~~~C~~c~~C~ 60 (98)
T cd00185 32 DTVCE-PCPPGTYTDSWNHLPKCLSCRTCD 60 (98)
T ss_pred CCeec-CCCCCCcccCCCCCCcCCcCccCC
Confidence 45675 78999987633 34677766665
No 104
>KOG4611|consensus
Probab=23.92 E-value=65 Score=35.19 Aligned_cols=23 Identities=26% Similarity=0.884 Sum_probs=19.1
Q ss_pred ccCCCCcccCCCCCCcccCC-CCCC
Q psy2190 334 EECPPGYNTTADETSCVPCP-DCPK 357 (976)
Q Consensus 334 ~~Cp~g~~~~~~~~~C~~C~-~C~~ 357 (976)
-.|.+|||.+ .++-|.+|. .|..
T Consensus 101 gncasgfyrn-dngyctkcetscse 124 (747)
T KOG4611|consen 101 GNCASGFYRN-DNGYCTKCETSCSE 124 (747)
T ss_pred ccccccceEC-CCcccccccccHhh
Confidence 5789999986 679999999 8854
No 105
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=23.57 E-value=90 Score=32.93 Aligned_cols=19 Identities=26% Similarity=0.807 Sum_probs=13.0
Q ss_pred CccccccceeecCcccccccccc
Q psy2190 248 EDCFVCIGFIHDGHCLDQCPPNL 270 (976)
Q Consensus 248 ~~C~~C~~~~~~~~Cv~~Cp~~~ 270 (976)
..|..|.. ..|+..||.+-
T Consensus 92 ~~C~~C~~----~~Cv~~CP~gA 110 (225)
T TIGR03149 92 KSCQHCDN----APCVAVCPTGA 110 (225)
T ss_pred hhccCCcC----cChHhhCCCCc
Confidence 35555543 47999999875
No 106
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=22.91 E-value=4.5e+02 Score=21.92 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=18.0
Q ss_pred EEEeecCCceEEEEEEEEeCCC
Q psy2190 908 LYLYDYPAGSYLFRLRVVSLGG 929 (976)
Q Consensus 908 ~~l~~L~pg~Y~~~V~A~t~aG 929 (976)
....-.+||.|.|+|.+.+..|
T Consensus 47 ~~~~y~~~G~y~v~l~v~n~~g 68 (79)
T smart00089 47 VTHTYTKPGTYTVTLTVTNAVG 68 (79)
T ss_pred EEEEeCCCcEEEEEEEEEcCCC
Confidence 4445568899999999999888
No 107
>KOG0994|consensus
Probab=22.39 E-value=1.3e+02 Score=38.34 Aligned_cols=25 Identities=24% Similarity=0.592 Sum_probs=18.6
Q ss_pred ccccccceeecCcccccccccccCCc
Q psy2190 249 DCFVCIGFIHDGHCLDQCPPNLQGQV 274 (976)
Q Consensus 249 ~C~~C~~~~~~~~Cv~~Cp~~~~~~~ 274 (976)
.|+.|+...-+..| +.|-.|+++||
T Consensus 874 aCi~CqD~T~G~~C-drCl~GyyGdP 898 (1758)
T KOG0994|consen 874 ACIDCQDSTTGHSC-DRCLDGYYGDP 898 (1758)
T ss_pred ccccccccccccch-hhhhccccCCc
Confidence 67888877777776 67888885554
No 108
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=21.72 E-value=80 Score=26.85 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=16.7
Q ss_pred CCCcEEEeecCCceEEEEEEE
Q psy2190 904 RDSGLYLYDYPAGSYLFRLRV 924 (976)
Q Consensus 904 ~~~~~~l~~L~pg~Y~~~V~A 924 (976)
..+.|.|.+|.||.|.+++.+
T Consensus 36 ~~G~f~~~~l~~g~Y~l~v~~ 56 (82)
T PF13620_consen 36 SDGRFSFEGLPPGTYTLRVSA 56 (82)
T ss_dssp TTSEEEEEEE-SEEEEEEEEB
T ss_pred CCceEEEEccCCEeEEEEEEE
Confidence 446799999999999999855
No 109
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=21.59 E-value=2.7e+02 Score=22.79 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=18.8
Q ss_pred cEEEeecCCceEEEEEEEEeCCCC
Q psy2190 907 GLYLYDYPAGSYLFRLRVVSLGGE 930 (976)
Q Consensus 907 ~~~l~~L~pg~Y~~~V~A~t~aG~ 930 (976)
.+...=..||.|.++|.|.+..|.
T Consensus 43 ~~t~ty~~~G~y~V~ltv~n~~g~ 66 (69)
T PF00801_consen 43 SVTHTYSSPGTYTVTLTVTNGVGS 66 (69)
T ss_dssp EEEEEESSSEEEEEEEEEEETTSE
T ss_pred CEEEEcCCCeEEEEEEEEEECCCC
Confidence 345555678999999999998773
No 110
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=21.14 E-value=60 Score=27.47 Aligned_cols=15 Identities=33% Similarity=0.755 Sum_probs=12.4
Q ss_pred eecCCc-eEEEEEEEE
Q psy2190 911 YDYPAG-SYLFRLRVV 925 (976)
Q Consensus 911 ~~L~pg-~Y~~~V~A~ 925 (976)
..|+|| .|.|.|+|.
T Consensus 65 Y~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 65 YQLEPGGDYSFTIRAK 80 (80)
T ss_pred eeccCCCceEEEEecC
Confidence 368996 999999983
No 111
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=20.88 E-value=66 Score=29.28 Aligned_cols=7 Identities=14% Similarity=0.254 Sum_probs=2.5
Q ss_pred EEehhhH
Q psy2190 952 VIVVVTG 958 (976)
Q Consensus 952 iii~~v~ 958 (976)
+++++++
T Consensus 63 iili~ll 69 (101)
T PF06024_consen 63 IILISLL 69 (101)
T ss_pred chHHHHH
Confidence 3333333
No 112
>KOG0613|consensus
Probab=20.21 E-value=1.1e+03 Score=31.10 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=36.3
Q ss_pred cEEEEEecCCCCCC-CceEEEEEEEEEcCCCCcceeeeeeccccCCCcEEEeecCCc-eEEEEEEEEeCCCCCCCCCc
Q psy2190 861 SALRIRWHPPSRPN-GIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAG-SYLFRLRVVSLGGEGPWTSW 936 (976)
Q Consensus 861 ~sv~l~W~~P~~~N-G~I~~Y~I~y~~~~~~~~~~~~v~~~~~~~~~~~~l~~L~pg-~Y~~~V~A~t~aG~G~~S~~ 936 (976)
.-+.+.|..+..+. -.|.+|.+.-....+. ....+....-....+++...-.++ .|.++|.+.-..|.+.|.+.
T Consensus 247 ~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~--~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~ 322 (1205)
T KOG0613|consen 247 RKIQLTLRAPRGPYSAHILGYLIEQRKHKGG--NTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPE 322 (1205)
T ss_pred eeeeEEeecCCCchHHHHhcchhhhcccCCC--ccccccccCCccccceeeecccCCcccceeeeEEeeccccccCch
Confidence 56778887665421 2355565553321111 111111100112223444444454 88888888887776655544
Done!