RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2190
(976 letters)
>gnl|CDD|216103 pfam00757, Furin-like, Furin-like cysteine rich region.
Length = 143
Score = 106 bits (267), Expect = 7e-27
Identities = 49/169 (28%), Positives = 60/169 (35%), Gaps = 49/169 (28%)
Query: 207 PGARSGPEKCEFY---WSNNDCQLI----------KEIEECHPLCAGGCTGKRAEDCFVC 253
PG C W + CQ + K E CH C GGCTG DC C
Sbjct: 9 PGTCEKCHPCCNNGSCWGSGHCQKVCPEQCKGRCTKPGECCHEQCLGGCTGPNDSDCLAC 68
Query: 254 IGFIHDGHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQ 313
F +G C+DQCPP Y + RC+T +EC
Sbjct: 69 RHFNDEGTCVDQCPPG----------------TYQF-GARCVTAKEC------------- 98
Query: 314 NMRMSYSDKAKWRPFNGSCMEECPPGYNTTADET-SCVPCPD-CPKVCK 360
NG C+ ECP GY + + C PC CPKVC+
Sbjct: 99 ----PKPGYNPLVIHNGECVRECPSGYTEVENNSRKCEPCEGLCPKVCE 143
>gnl|CDD|216254 pfam01030, Recep_L_domain, Receptor L domain. The L domains from
these receptors make up the bilobal ligand binding site.
Each L domain consists of a single-stranded right hand
beta-helix. This Pfam entry is missing the first 50
amino acid residues of the domain.
Length = 112
Score = 96.2 bits (240), Expect = 1e-23
Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 22/134 (16%)
Query: 375 GCTVINGSLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIH 434
CTVI G+L I + + ++E +EL L I ITG+L I + ++SLSFL +L+ I
Sbjct: 1 NCTVIYGNLEITLISENNE---EELLSFLSNIEEITGYLLIYRTN-LKSLSFLPNLRVIR 56
Query: 435 GEREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPK 494
G NY+L++ DNPNL EL S I +G + H+NPK
Sbjct: 57 GRNLF----------DDNYALVILDNPNLTELGLPS--------LKNITRGGVYIHNNPK 98
Query: 495 LCLDKIYELINVTN 508
LC + +
Sbjct: 99 LCYTETEIDWFLIL 112
Score = 89.2 bits (222), Expect = 4e-21
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 82 CTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKLFPNLAIIRGN 141
CTV+ G ++I LI + ++ + + EIT YL Y + LKS+ PNL +IRG
Sbjct: 2 CTVIYGNLEITLISENNEEELLS-FLSNIEEITGYLLIYR-TNLKSL-SFLPNLRVIRGR 58
Query: 142 TLIWD-YTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNPD 180
L D Y + NL E+GL L +I +G V I NP
Sbjct: 59 NLFDDNYALVILDNPNLTELGLPSLKNITRGGVYIHNNPK 98
>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein
fibronectin. Its tenth fibronectin type III repeat
contains an RGD cell recognition sequence in a flexible
loop between 2 strands. Approximately 2% of all animal
proteins contain the FN3 repeat; including extracellular
and intracellular proteins, membrane spanning cytokine
receptors, growth hormone receptors, tyrosine
phosphatase receptors, and adhesion molecules. FN3-like
domains are also found in bacterial glycosyl hydrolases.
Length = 93
Score = 56.7 bits (137), Expect = 6e-10
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 853 LNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS----GL 908
L + ++++ + W PP G I Y +EY+ + G+ + + S GL
Sbjct: 7 LRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEV--EVTPGSETSYTLTGL 64
Query: 909 YLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCV 940
P Y FR+R V+ GGE P +
Sbjct: 65 ----KPGTEYEFRVRAVNGGGESPPSESVTVT 92
Score = 38.6 bits (90), Expect = 0.001
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 637 PSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIK 673
PS P V V S+SVTL W P+ G + YV++
Sbjct: 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVE 37
Score = 31.7 bits (72), Expect = 0.38
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFK 590
+NL + + T V++ + E++ P YV+ Y + +G + + +
Sbjct: 5 TNLRVTDVTSTSVTLSWTPPEDDGGP-ITGYVVEYREKGSGDWKEVEVT----------- 52
Query: 591 DINSKNKTVEVMNLEPATEYAFFVKIYNSQ 620
+ + L+P TEY F V+ N
Sbjct: 53 --PGSETSYTLTGLKPGTEYEFRVRAVNGG 80
>gnl|CDD|238021 cd00064, FU, Furin-like repeats. Cysteine rich region. Exact
function of the domain is not known. Furin is a
serine-kinase dependent proprotein processor. Other
members of this family include endoproteases and cell
surface receptors.
Length = 49
Score = 45.6 bits (108), Expect = 1e-06
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 233 ECHPLCAGGCTGKRAEDCFVCIGFI--HDGHCLDQCPPN 269
CHP CA CTG + C C G C+ +CP
Sbjct: 1 PCHPSCAT-CTGPGPDQCTSCRHGFYLDGGTCVSECPEG 38
Score = 29.4 bits (66), Expect = 0.79
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 325 WRPFNGSCMEECPPGYNTTADETSCV 350
+ G+C+ ECP G + C+
Sbjct: 24 FYLDGGTCVSECPEGTYADTEGGVCL 49
>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain.
Length = 84
Score = 45.5 bits (108), Expect = 3e-06
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 853 LNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR--DSGLYL 910
L + +++L + W PP NG I Y +EY+ +GG +GL
Sbjct: 6 LTVTDVTSTSLTLSWSPP-PGNGPITGYEVEYRPVNGGEEWKEITVPGTTTSYTLTGL-- 62
Query: 911 YDYPAGSYLFRLRVVSLGGEGPWT 934
P Y R++ V+ GEGP +
Sbjct: 63 --KPGTEYEVRVQAVNGAGEGPPS 84
Score = 30.9 bits (70), Expect = 0.61
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 640 PYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRN 688
P V V S+S+TL W P +G + Y ++ Y +
Sbjct: 3 PTNLTVTDVTSTSLTLSW-SPPPGNGPITGYEVE-YRPVNGGEEWKEIT 49
>gnl|CDD|214589 smart00261, FU, Furin-like repeats.
Length = 45
Score = 43.3 bits (102), Expect = 9e-06
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 232 EECHPLCAGGCTGKRAEDCFVCIG--FIHDGHCLDQCPPN 269
+ CHP CA CTG +DC C F+ G C+ +CPP
Sbjct: 5 KPCHPECAT-CTGPGPDDCTSCKHGFFLDGGKCVSECPPG 43
>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain. One of three types of
internal repeat within the plasma protein, fibronectin.
The tenth fibronectin type III repeat contains a RGD
cell recognition sequence in a flexible loop between 2
strands. Type III modules are present in both
extracellular and intracellular proteins.
Length = 83
Score = 43.0 bits (101), Expect = 3e-05
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGI--IVAYNIEYKRESGGNSENMCRTRKDIDRDS 906
P +L + ++++ + W PP IV Y +EY+ E E +
Sbjct: 3 PPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLT 62
Query: 907 GLYLYDYPAGSYLFRLRVVSLGGEG 931
GL P Y FR+R V+ GEG
Sbjct: 63 GL----KPGTEYEFRVRAVNGAGEG 83
Score = 33.4 bits (76), Expect = 0.076
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 637 PSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
PS P V V S+SVTL W P Y++ Y+ ++
Sbjct: 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIV--GYRVEYRE 42
>gnl|CDD|234226 TIGR03481, HpnM, hopanoid biosynthesis associated membrane protein
HpnM. The genomes containing members of this family
share the machinery for the biosynthesis of hopanoid
lipids. Furthermore, the genes of this family are
usually located proximal to other components of this
biological process. The proteins are members of the
pfam05494 family of putative transporters known as
"toluene tolerance protein Ttg2D", although it is
unlikely that the members included here have anything to
do with toluene per-se.
Length = 198
Score = 32.7 bits (75), Expect = 0.54
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 498 DKIYELINVTNITYDSDFDVLKESNGDEFICGFSNLALVVLNKTDVSI---RFQLNENEK 554
+ ++L + +T S + L FI F L++ S RF++ E +
Sbjct: 61 REAFDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAGERFEVEEQQP 120
Query: 555 VPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDI 592
P + V + +D G FD + W+ DI
Sbjct: 121 SPRGRVIVRSTIVSDGGDPVKFDYIMRQGQGKWRIVDI 158
>gnl|CDD|235475 PRK05452, PRK05452, anaerobic nitric oxide reductase
flavorubredoxin; Provisional.
Length = 479
Score = 32.0 bits (73), Expect = 1.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 304 KRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEEC 336
R++T+ MS S KAKWRP + +E C
Sbjct: 354 DRLSTRLQDAGFEMSLSLKAKWRP-DQDALELC 385
Score = 30.5 bits (69), Expect = 5.6
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 12 LSDKAKWRPFNGSCMEECPP-GKQLIPRDTLQPQSAS 47
LS KAKWRP + +E C G+++ + L P S
Sbjct: 369 LSLKAKWRP-DQDALELCREHGREIARQWALAPLPQS 404
>gnl|CDD|239593 cd03516, Link_domain_CD44_like, This domain is a hyaluronan
(HA)-binding domain. It is found in CD44 receptor and
mediates adhesive interactions during inflammatory
leukocyte homing and tumor metastasis. It also plays an
important role in arteriogenesis. The functional
HA-binding domain of CD44 is an extended domain
comprised of a single link module flanked with N-and C-
extensions. These extensions are essential for folding
and for functional activity. This group also contains
the cell surface retention sequence (CRS) binding
protein-1 (CRSBP-1) and lymph vessel endothelial
receptor-1 (LYVE-1). CRSBP-1 is a cell surface binding
protein for the CRS motif of PDGF-BB (platelet-derived
growth factor-BB) and is responsible for the cell
surface retention of PDGF-BB in SSV-transformed cells.
CRSBP-1 may play a role in autocrine regulation of cell
growth mediated by CRS containing growth regulators.
LYVE-1 is preferentially expressed on the lymphatic
endothelium and is used as a molecular marker for the
detection and characterization of lymphatic vessels in
tumors.
Length = 144
Score = 30.9 bits (70), Expect = 1.7
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 184 ITKKGSVVINDIKSKEAC---------LQEGEPGARSGPEKCEFYWSNNDCQLIKEIEEC 234
+ K G +N ++KEAC + E + G E C + W + +I I+
Sbjct: 11 VEKNGRYSLNFTEAKEACRALGLTLASKAQVETALKFGFETCRYGWVEDGFVVIPRIDP- 69
Query: 235 HPLCAGGCTG 244
+PLC TG
Sbjct: 70 NPLCGKNGTG 79
>gnl|CDD|221272 pfam11857, DUF3377, Domain of unknown function (DUF3377). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is about 70
amino acids in length.
Length = 74
Score = 29.2 bits (66), Expect = 1.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 940 VIESAETPMSVYVIVVVTGLVILFCMLAVILFLI 973
V+E E P +V VV LV+L C+L ++ ++
Sbjct: 19 VVEVDEVPGTVNAAAVVIPLVLLLCILVLLYTIV 52
>gnl|CDD|219467 pfam07562, NCD3G, Nine Cysteines Domain of family 3 GPCR. This
conserved sequence contains several highly-conserved Cys
residues that are predicted to form disulphide bridges.
It is predicted to lie outside the cell membrane,
tethered to the pfam00003 in several receptor proteins.
Length = 54
Score = 28.1 bits (63), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 334 EECPPG-YNTTADETSCVPCPD 354
CP G + T D T+C PCP+
Sbjct: 29 IPCPEGEISNTTDSTTCTPCPE 50
>gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 585
Score = 31.0 bits (71), Expect = 3.7
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 23/110 (20%)
Query: 502 ELINVTNITYDSDFDVLKESNGDEFICGFSNLALVVLNKTDVSIRFQLNENEKVPDNQRY 561
ELI+VT++ DS+F V + + G A+VV +S R Q++E + + Y
Sbjct: 295 ELIDVTDLFKDSEFKVFSNALAN----GGRVKAIVVPGGASLS-RKQIDELTEF--AKIY 347
Query: 562 ---VLFYMKADNGMYTDFDTVGSCSASGW--KFKDINSKNKTVEVMNLEP 606
L Y+K + G KF + +E + E
Sbjct: 348 GAKGLAYIKVEED-----------GLKGPIAKFLSEEILEELIERLGAED 386
>gnl|CDD|180394 PRK06090, PRK06090, DNA polymerase III subunit delta'; Validated.
Length = 319
Score = 30.5 bits (69), Expect = 4.2
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 413 LKISHSLPIQSLSFLKS--LQSIHG-EREIIRGDTSESSVYSNYSLIVWDNPNLQELWGW 469
LK++ P+++L+ +K L+ H ER+++ + S + ++ +P W W
Sbjct: 188 LKLNMGSPLKTLAMMKEGGLEKYHKLERQLVDALSGPVSDQLKCASLIAADPLTHLSWLW 247
Query: 470 SNLPDGQRPKFEIKKGKIL 488
L D Q+ F ++ L
Sbjct: 248 LLLTDAQKVHFGVQNEYYL 266
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli [Fatty acid and phospholipid metabolism,
Degradation].
Length = 385
Score = 30.7 bits (69), Expect = 4.4
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 395 VHQELEKGLGMITNITGHLKISHSLPIQSLSFL--KSLQSIH-GEREIIRGD 443
V Q LE+G + N +I H+ +++ L S+Q++H R I+ GD
Sbjct: 56 VQQTLEQGFNIARNAALLAQIPHTSAAVTVNRLCGSSMQALHDAARAIMTGD 107
>gnl|CDD|224346 COG1429, CobN, Cobalamin biosynthesis protein CobN and related
Mg-chelatases [Coenzyme metabolism].
Length = 1388
Score = 30.8 bits (70), Expect = 4.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 943 SAETPMSVYVIVVVTGLVILFC 964
S T MS IV V LV+L
Sbjct: 1360 SESTGMSFSAIVGVLALVVLVG 1381
>gnl|CDD|219525 pfam07699, GCC2_GCC3, GCC2 and GCC3.
Length = 48
Score = 27.0 bits (60), Expect = 5.4
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 334 EECPPG-YNTTADETSCVPCPD 354
E CP G Y + SC+PCP
Sbjct: 12 EPCPRGTYQPEEGQDSCIPCPP 33
>gnl|CDD|201599 pfam01108, Tissue_fac, Tissue factor. This family is found in
metazoa, and is very similar to the fibronectin type III
domain. The family is found in cytokine receptors,
interleukin and interferon receptors and coagulation
factor III proteins. It occurs multiple times, as does
fn3, family pfam00041.
Length = 106
Score = 28.5 bits (64), Expect = 5.9
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 18/89 (20%)
Query: 851 DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENM--C----RTRKDIDR 904
S NF+ I + W P + V Y ++YK + +++ C T D+
Sbjct: 30 QSRNFKHI------LTWEPGP-NSPPNVTYTVQYKSYGSRDWKDVPNCTNITETECDLT- 81
Query: 905 DSGLYLYDYPAGSYLFRLRVVSLGGEGPW 933
D L LY +Y R+R G W
Sbjct: 82 DETLDLY----ETYYARVRAELGNGTSSW 106
>gnl|CDD|214453 MTH00196, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 365
Score = 29.6 bits (67), Expect = 7.5
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 22/84 (26%)
Query: 908 LYLYDYPAG------SYLFRLRVVSLGGEGPWTSWKPCVIESAET----------PMSVY 951
P G + LF+L V P+ W P V E A T + ++
Sbjct: 89 FSSVSVPIGYLLIIVALLFKLSV------APFHMWAPDVYEGAPTKTTALLAIVPKLGIF 142
Query: 952 VIVVVTGLVILFCMLAVILFLILG 975
I+V GL + ++ + L +G
Sbjct: 143 SILVSIGLNVNILLIGGLFSLFVG 166
>gnl|CDD|149715 pfam08741, YwhD, YwhD family. This family of proteins are
currently uncharacterized. They are around 170 amino
acids in length.
Length = 163
Score = 28.9 bits (65), Expect = 8.8
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 14/63 (22%)
Query: 759 DLHKAYGGDLPSLGNISSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDK 818
D H +G SL N+S D EE ++ +G H RS V E+ K
Sbjct: 15 DGHGGFGAGSLSLDNVSPVFIDVEE------GEAFVDIGAMHARSAV--------EKGIK 60
Query: 819 FLP 821
F+P
Sbjct: 61 FIP 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.422
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,882,634
Number of extensions: 4747217
Number of successful extensions: 3960
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3935
Number of HSP's successfully gapped: 36
Length of query: 976
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 870
Effective length of database: 6,236,078
Effective search space: 5425387860
Effective search space used: 5425387860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.6 bits)