RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2190
(976 letters)
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 469 bits (1206), Expect = e-151
Identities = 255/952 (26%), Positives = 397/952 (41%), Gaps = 122/952 (12%)
Query: 61 EKVCTDIDIRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFY 120
+VC +DIRN ++ L++C+V+EG +QI L+ + +DF +++FPKL IT+YL +
Sbjct: 5 GEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLF 64
Query: 121 HVSGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNP- 179
V GL+S+ LFPNL +IRG+ L ++Y +F M +L+E+GL+ L +I +G+V I +N
Sbjct: 65 RVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNE 124
Query: 180 -------DWKRITKKGS--VVINDIKSKEACLQEGEPGARSGPEKC----------EFYW 220
DW RI ++ + E C PG G C E W
Sbjct: 125 LCYLATIDWSRILDSVEDNHIVLNKDDNEECGDIC-PGTAKGKTNCPATVINGQFVERCW 183
Query: 221 SNNDCQLI-----------KEIEECHPLCAGGCTG-KRAEDCFVCIGFIHDGHCLDQCPP 268
+++ CQ + E CH C G C+ C C F DG C++ CPP
Sbjct: 184 THSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPP 243
Query: 269 NLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPF 328
Y + + RC+ C + + Q ++
Sbjct: 244 PY----------------YHFQDWRCVNFSFCQDLHHKCKNSRRQGCH-------QYVIH 280
Query: 329 NGSCMEECPPGYNTTADETSCVPCPD-CPKVCKGVH----VKSIEVARSTKGCTVINGSL 383
N C+ ECP GY + C PC CPKVC + + S+ A+ +GCTVINGSL
Sbjct: 281 NNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSL 340
Query: 384 GIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHGEREIIRGD 443
I I+ G++ ELE LG+I I+G+LKI S + SLSF + L+ I G
Sbjct: 341 IINIRGGNNLA--AELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRG-------- 390
Query: 444 TSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYEL 503
E+ NYS DN NL++LW WS I +GK+ FH NPKLCL +I+++
Sbjct: 391 --ETLEIGNYSFYALDNQNLRQLWDWSK------HNLTITQGKLFFHYNPKLCLSEIHKM 442
Query: 504 INVTNITY-DSDFDVLKESNGDEFICGFSNLALVVLNKTDVSIRFQLNENEKVPDNQR-- 560
V+ D+ ++NGD+ C L + + I L P + R
Sbjct: 443 EEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKIL--LRWEPYWPPDFRDL 500
Query: 561 --YVLFYMKADNGMYTDFDTVGSCSASGWKFKDINS----------KNKTVEVMNLEPAT 608
++LFY +A T+FD +C ++ W DI+ + + L+P T
Sbjct: 501 LGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWT 560
Query: 609 EYAFFVKIYNS------QRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKH 662
+YA FVK + +S+I T T PS+P V +SS + L+W P
Sbjct: 561 QYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSD 620
Query: 663 PHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLRDLSDSTYAASHLMRFAKTTRKPLKECC 722
P+G + Y++ Q D + + + +
Sbjct: 621 PNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAG 680
Query: 723 GKFPCDFDHESFQYMTSQMQLIQQCDNYIFKYLQYNDLHKAYGGDLPSLGNISSRLPDRE 782
C + + ++Y+ +N + + E
Sbjct: 681 ECCSCPKTDSQILKELEESSFRKTFEDYL-----HNVVFVPRPSRKRRSLGDVGNAGNNE 735
Query: 783 ENDVLY---PETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRT 839
E+ + S + GL HF + AC + D E RCS V +RT
Sbjct: 736 EHRPFEKVVNKESLVISGLRHFTGYRIELQACNQ---------DTPEERCSVAAYVSART 786
Query: 840 EVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTR 899
+ AD I + E+ + + + W P PNG+IV Y + Y+R ++C TR
Sbjct: 787 MPEAKADDIVGP-VTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEE-LHLCDTR 844
Query: 900 KDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVI-ESAETPMSV 950
K + G L G+Y R+R SL G G WT + + + P ++
Sbjct: 845 KHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNI 896
Score = 62.6 bits (151), Expect = 5e-10
Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 18/168 (10%)
Query: 18 WRPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFDQTKEKVCTDI---DIRNYVS 74
+ N C+ ECP G + + L KVC + + V+
Sbjct: 277 YVIHNNKCIPECPSGYTMNSSNLLCTPC-----------LGPCPKVCHLLEGEKTIDSVT 325
Query: 75 SFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKLFPN 134
S L+ CTV+ G + IN+ + + EI+ YL L S+ F
Sbjct: 326 SAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSL-SFFRK 384
Query: 135 LAIIRGNTL-IWDYTFSVFSMFNLQEIGLH--RLTHIMKGTVVILRNP 179
L +IRG TL I +Y+F NL+++ I +G + NP
Sbjct: 385 LRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNP 432
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 288 bits (738), Expect = 1e-87
Identities = 155/522 (29%), Positives = 237/522 (45%), Gaps = 78/522 (14%)
Query: 61 EKVCTDIDIRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFY 120
+VC +DIRN ++ L++C+V+EG +QI L+ + +DF +++FPKL IT+YL +
Sbjct: 5 GEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLF 64
Query: 121 HVSGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRN-- 178
V GL+S+ LFPNL +IRG+ L ++Y +F M +L+E+GL+ L +I +G+V I +N
Sbjct: 65 RVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNE 124
Query: 179 ------PDWKRITKKGS--VVINDIKSKEACLQEGEPGARSGP---------EKCEFYWS 221
DW RI ++ + E C A+ + E W+
Sbjct: 125 LCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWT 184
Query: 222 NNDCQLI-----------KEIEECHPLCAGGCTG-KRAEDCFVCIGFIHDGHCLDQCPPN 269
++ CQ + E CH C G C+ C C F DG C++ CPP
Sbjct: 185 HSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPP 244
Query: 270 LQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFN 329
Y + + RC+ C + + ++ N
Sbjct: 245 Y----------------YHFQDWRCVNFSFCQDLHHKCKNS-------RRQGCHQYVIHN 281
Query: 330 GSCMEECPPGYNTTADETSCVPCPDCPKVC-----KGVHVKSIEVARSTKGCTVINGSLG 384
C+ ECP GY + C PC + S+ A+ +GCTVINGSL
Sbjct: 282 NKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLI 341
Query: 385 IQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHGEREIIRGDT 444
I I+ G++ ELE LG+I I+G+LKI S + SLSF + L+ I G
Sbjct: 342 INIRGGNNL--AAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRG--------- 390
Query: 445 SESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYELI 504
E+ NYS DN NL++LW WS I +GK+ FH NPKLCL +I+++
Sbjct: 391 -ETLEIGNYSFYALDNQNLRQLWDWSKH------NLTITQGKLFFHYNPKLCLSEIHKME 443
Query: 505 NVTNITY-DSDFDVLKESNGDEFICGFSNLALVVLNKTDVSI 545
V+ D+ ++NGD+ C L + + I
Sbjct: 444 EVSGTKGRQERNDIALKTNGDKASCENELLKFSYIRTSFDKI 485
Score = 75.7 bits (185), Expect = 2e-14
Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 26/205 (12%)
Query: 18 WRPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFDQTKEKVCTDIDIRNYVSSFD 77
+ N C+ ECP G S++ + + + V+S
Sbjct: 277 YVIHNNKCIPECPSGY--------TMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQ 328
Query: 78 VLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKLFPNLAI 137
L+ CTV+ G + IN+ + + EI+ YL L S+ F L +
Sbjct: 329 ELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSL-SFFRKLRL 387
Query: 138 IRGNTLIWD-YTFSVFSMFNLQEIGL--HRLTHIMKGTVVILRNP--------DWKRITK 186
IRG TL Y+F NL+++ I +G + NP + ++
Sbjct: 388 IRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSG 447
Query: 187 ------KGSVVINDIKSKEACLQEG 205
+ + + K +C E
Sbjct: 448 TKGRQERNDIALKTNGDKASCENEL 472
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 276 bits (707), Expect = 2e-83
Identities = 162/510 (31%), Positives = 230/510 (45%), Gaps = 84/510 (16%)
Query: 61 EKVCTDIDIRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFY 120
E IDIRN L++CTV+EG++ I LI A+D+ + FPKL ITEYL +
Sbjct: 1 EICGPGIDIRNDYQQLKRLENCTVIEGYLHILLISK--AEDYRSYRFPKLTVITEYLLLF 58
Query: 121 HVSGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNP- 179
V+GL+S+G LFPNL +IRG L ++Y +F M NL++IGL+ L +I +G + I +N
Sbjct: 59 RVAGLESLGDLFPNLTVIRGWKLFYNYALVIFEMTNLKDIGLYNLRNITRGAIRIEKNAD 118
Query: 180 -------DWKRITKKGSVVINDIKSKEACLQEGEPGARSGPEKCE----------FYWSN 222
DW I S + PG CE W+
Sbjct: 119 LCYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTT 178
Query: 223 NDCQLI-----------KEIEECHPLCAGGCTG-KRAEDCFVCIGFIHDGHCLDQCPPNL 270
N CQ + + E CHP C G C+ C C + + G C+ CPPN
Sbjct: 179 NRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNT 238
Query: 271 QGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNG 330
Y + RC+ R+ C N + SD + +G
Sbjct: 239 ----------------YRFEGWRCVDRDFCANILSAES-----------SDSEGFVIHDG 271
Query: 331 SCMEECPPGYNTTADETSC--VPCPDCPKVCKGVH----VKSIEVARSTKGCTVINGSLG 384
CM+ECP G+ ++ CPKVC+ + S+ A+ +GCT+ G+L
Sbjct: 272 ECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLL 331
Query: 385 IQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHGEREIIRGDT 444
I I+ G + ELE +G+I +TG++KI HS + SLSFLK+L+ I G
Sbjct: 332 INIRRG--NNIASELENFMGLIEVVTGYVKIRHSHALVSLSFLKNLRLILG--------- 380
Query: 445 SESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYELI 504
E + NYS V DN NLQ+LW W + IK GK+ F NPKLC+ +IY +
Sbjct: 381 -EEQLEGNYSFYVLDNQNLQQLWDWDH------RNLTIKAGKMYFAFNPKLCVSEIYRME 433
Query: 505 NVTNITYD-SDFDVLKESNGDEFICGFSNL 533
VT S D+ +NG+ C
Sbjct: 434 EVTGTKGRQSKGDINTRNNGERASCESDVD 463
Score = 80.3 bits (197), Expect = 1e-15
Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 25/211 (11%)
Query: 13 SDKAKWRPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFDQTKEKVCTDIDIRNY 72
SD + +G CM+ECP G + S S + +
Sbjct: 261 SDSEGFVIHDGECMQECPSGFI-------RNGSQSMYCIPCEGPCPKVCEEEKKTKTIDS 313
Query: 73 VSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKLF 132
V+S +L+ CT+ +G + IN+ + + +T Y+ H L S+
Sbjct: 314 VTSAQMLQGCTIFKGNLLINIRRGNNIASELENFMGLIEVVTGYVKIRHSHALVSL-SFL 372
Query: 133 PNLAIIRGNTLIWD-YTFSVFSMFNLQEIGL--HRLTHIMKGTVVILRNP--------DW 181
NL +I G + Y+F V NLQ++ HR I G + NP
Sbjct: 373 KNLRLILGEEQLEGNYSFYVLDNQNLQQLWDWDHRNLTIKAGKMYFAFNPKLCVSEIYRM 432
Query: 182 KRITK------KGSVVINDIKSKEACLQEGE 206
+ +T KG + + + +C + +
Sbjct: 433 EEVTGTKGRQSKGDINTRNNGERASCESDVD 463
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 205 bits (522), Expect = 2e-57
Identities = 100/528 (18%), Positives = 165/528 (31%), Gaps = 108/528 (20%)
Query: 61 EKVCTDIDIR---------NYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLR 111
+KVC + +++S + +C VV G ++I + + F ++
Sbjct: 4 KKVCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYVQRNYDLSF----LKTIQ 59
Query: 112 EITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIWD-YTFSVFSMFN-----LQEIGLHRL 165
E+ Y+ + + NL IIRGN + Y +V S ++ L+E+ + L
Sbjct: 60 EVAGYVLIALNTVERI---PLENLQIIRGNMYYENSYALAVLSNYDANKTGLKELPMRNL 116
Query: 166 THIMKGTVVILRNP--------DWKRITKKGSVVINDIKSK------EACLQEGEPGARS 211
I+ G V NP W+ I + + + + C G+
Sbjct: 117 QEILHGAVRFSNNPALCNVESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCW 176
Query: 212 GP-EKCEFYWSNNDCQLI--------KEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHC 262
G E+ + C + CH CA GCTG R DC VC F + C
Sbjct: 177 GAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATC 236
Query: 263 LDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDK 322
D CPP + Y+ + E + + +
Sbjct: 237 KDTCPPLML---------------YNPTTYQMDVNPEGKYSF--------GATCVKKCPR 273
Query: 323 AKWRPFNGSCMEECPPGYNTTADETS--CVPCPDCPKVCKGVH---------VKSIEVAR 371
+GSC+ C ++ C C + + +
Sbjct: 274 NYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIK 333
Query: 372 STKGCTVINGSLGIQIQTGD------SEVVHQELEKGLGMITNITGHLKISHSLP-IQSL 424
K CT I+G L I + + + L + ITG L I L
Sbjct: 334 HFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDL 393
Query: 425 SFLKSLQSIHGEREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKK 484
++L+ I G + + +SL V + N+ L S EI
Sbjct: 394 HAFENLEIIRG----------RTKQHGQFSLAV-VSLNITSLGLRSL--------KEISD 434
Query: 485 GKILFHDNPKLCLDKIYELINVTNITYDSDFDVLKESNGDEFICGFSN 532
G ++ N LC IN + S SN E C +
Sbjct: 435 GDVIISGNKNLCYANT---INWKKLFGTSGQKTKIISNRGENSCKATG 479
Score = 78.0 bits (191), Expect = 5e-15
Identities = 46/253 (18%), Positives = 73/253 (28%), Gaps = 47/253 (18%)
Query: 18 WRPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFDQTKEKVCTDIDIRNYVSSFD 77
+GSC+ C + D ++ + ++
Sbjct: 276 VVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIG--EFKDSLSINATNIK 333
Query: 78 VLKDCTVVEGFVQI--------NLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIG 129
K+CT + G + I + E ++EIT +L ++
Sbjct: 334 HFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDL 393
Query: 130 KLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNP--------DW 181
F NL IIRG T N+ +GL L I G V+I N +W
Sbjct: 394 HAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINW 453
Query: 182 KRITKKG--SVVINDIKSKEACLQEGEPGARSGPEKCEFYWSNNDCQLIKEIEECHPLC- 238
K++ I + + +C G+ CH LC
Sbjct: 454 KKLFGTSGQKTKIISNRGENSCKATGQV--------------------------CHALCS 487
Query: 239 AGGCTGKRAEDCF 251
GC G DC
Sbjct: 488 PEGCWGPEPRDCV 500
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 190 bits (484), Expect = 2e-51
Identities = 105/539 (19%), Positives = 175/539 (32%), Gaps = 121/539 (22%)
Query: 62 KVCTDIDIRNYVSSF---------DVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLRE 112
+VCT D++ + + + + C VV+G +++ + + + F ++E
Sbjct: 2 QVCTGTDMKLRLPASPETHLDMLRHLYQGCQVVQGNLELTYVPANASLSF----LQDIQE 57
Query: 113 ITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIWD-YTFSVFSMFN--------------- 156
+ Y+ H + L I+RG L D Y +V +
Sbjct: 58 VQGYMLIAHNQVKRV---PLQRLRIVRGTQLFEDKYALAVLDNRDPQDNVAASTPGRTPE 114
Query: 157 -LQEIGLHRLTHIMKGTVVILRNP--------DWKRITKKGSVVINDIKSKEACLQEGEP 207
L+E+ L LT I+KG V+I NP WK + +K + + + + P
Sbjct: 115 GLRELQLRSLTEILKGGVLIRGNPQLCYQDMVLWKDVFRKNNQ-LAPVDIDTNRSRACPP 173
Query: 208 GARSGPEKCEFYWSNNDCQLI---------------KEIEECHPLCAGGCTGKRAEDCFV 252
A + + + S DCQ++ + CH CA GCTG + DC
Sbjct: 174 CAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLA 233
Query: 253 CIGFIHDGHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFP 312
C+ F H G C CP + Y+ + E +
Sbjct: 234 CLHFNHSGICELHCPA---------------LVTYNTDTFESMHNPEG--------RYTF 270
Query: 313 QNMRMSYSDKAKWRPFNGSCMEECPPGYNTTADETSCVPCPDCPKVC------------K 360
++ GSC CPP E C C K C +
Sbjct: 271 GASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLR 330
Query: 361 GVHVKSIEVARSTKGCTVINGSLGIQIQTGDS------EVVHQELEKGLGMITNITGHLK 414
G + + + GC I GSL ++ D + E + + ITG+L
Sbjct: 331 GARAITSDNVQEFDGCKKIFGSLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEITGYLY 390
Query: 415 ISHSLP-IQSLSFLKSLQSIHGEREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLP 473
IS ++ LS ++L+ I G ++ + + L S
Sbjct: 391 ISAWPDSLRDLSVFQNLRIIRGR-----------ILHDGAYSLTLQGLGIHSLGLRS--- 436
Query: 474 DGQRPKFEIKKGKILFHDNPKLCLDKIYELINVTNITYDSDFDVLKESNGDEFICGFSN 532
E+ G L H N LC + + + +L N E CG
Sbjct: 437 -----LRELGSGLALIHRNAHLCFVHT---VPWDQLFRNPHQALLHSGNRPEEDCGLEG 487
Score = 113 bits (282), Expect = 5e-26
Identities = 64/377 (16%), Positives = 97/377 (25%), Gaps = 60/377 (15%)
Query: 6 KNSVVELSDKAKWRPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFDQTKEKVCT 65
S V GSC CPP Q + + + +
Sbjct: 271 GASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLR 330
Query: 66 DIDIRNYVSSFDVLKDCTVVEGFVQINL--------IDNSTAQDFENITFPKLREITEYL 117
+ C + G + + + + F L EIT YL
Sbjct: 331 GARA-ITSDNVQEFDGCKKIFGSLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEITGYL 389
Query: 118 SFYHVSGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILR 177
+F NL IIRG L + +GL L + G +I R
Sbjct: 390 YISAWPDSLRDLSVFQNLRIIRGRILHDGAYSLTLQGLGIHSLGLRSLRELGSGLALIHR 449
Query: 178 NP--------DWKRITKKGSVVINDIKSKEACLQEGEPGARSGPEKCEFYWSNNDCQLIK 229
N W ++ + P + + N +
Sbjct: 450 NAHLCFVHTVPWDQLFR-------------------------NPHQALLHSGNRPEEDCG 484
Query: 230 EI-EECHPLCA-GGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILYGGIRY 287
C+ LCA G C G C C F+ C+++C G R
Sbjct: 485 LEGLVCNSLCAHGHCWGPGPTQCVNCSHFLRGQECVEECRVW------------KGLPRE 532
Query: 288 SYMNRRCLT-REECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNTTADE 346
++RCL EC T + + SC+ CP G
Sbjct: 533 YVSDKRCLPCHPECQPQNSSETCFGSEA---DQCAACAHYKDSSSCVARCPSGVKPDLSY 589
Query: 347 TSCVPCPDCPKVCKGVH 363
PD +C+
Sbjct: 590 MPIWKYPDEEGICQPCP 606
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 178 bits (451), Expect = 1e-47
Identities = 109/521 (20%), Positives = 177/521 (33%), Gaps = 104/521 (19%)
Query: 60 KEKVCTDIDIR---------NYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKL 110
K+C R +Y + D +CT V+G +++ + N + + +
Sbjct: 5 HHKICIGTKSRLSVPSNKEHHYRNLRDRYTNCTYVDGNLELTWLPNE---NLDLSFLDNI 61
Query: 111 REITEYLSFYHVSGLKSIGKLFPNLAIIRGNTL----IWDYTFSVFSMFN-LQEIGLHRL 165
RE+T Y+ HV K +FP L IIRG TL + + +++F ++ + + + L
Sbjct: 62 REVTGYILISHVDVKKV---VFPKLQIIRGRTLFSLSVEEEKYALFVTYSKMYTLEIPDL 118
Query: 166 THIMKGTVVILRNP--------DWKRITKKGS--VVINDIKSKEACLQEGEPGARSG--- 212
++ G V N W I G+ D + E + G
Sbjct: 119 RDVLNGQVGFHNNYNLCHMRTIQWSEIVSNGTDAYYNYDFTAPERECPKCHESCTHGCWG 178
Query: 213 ----------PEKCEFYWSNNDCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHC 262
C + C K E CH CAGGCTG +DC C F +G C
Sbjct: 179 EGPKNCQKFSKLTCSPQCAGGRCYGPKPRECCHLFCAGGCTGPTQKDCIACKNFFDEGVC 238
Query: 263 LDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDK 322
++CPP + Y+ T E +
Sbjct: 239 KEECPPMRK---------------YNPTTYVLETNPEG---------KYAYGATCVKECP 274
Query: 323 AKWRPFNGSCMEECPPGYNTTADETSCVPCPDCPKVCKGVHVKSIEVARSTKGCTVINGS 382
NG+C+ CP CPK C GV V S + CTVI+G+
Sbjct: 275 GHLLRDNGACVRSCPQDK-MDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFRNCTVIDGN 333
Query: 383 LGIQIQTGD--------------SEVVHQELEKGLGMITNITGHLKISHSLP-IQSLSFL 427
+ I QT + E + + ITG+L I + P ++LS+
Sbjct: 334 IRILDQTFSGFQDVYANYTMGPRYIPLDPERLEVFSTVKEITGYLNIEGTHPQFRNLSYF 393
Query: 428 KSLQSIHGEREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKI 487
++L++IHG + S ++ + +L L + +I G +
Sbjct: 394 RNLETIHG----------RQLMESMFAALAIVKSSLYSLEMRNL--------KQISSGSV 435
Query: 488 LFHDNPKLCLDKIYELINVTNITYDSDFDVLKESNGDEFIC 528
+ N LC I I + + V N +C
Sbjct: 436 VIQHNRDLCYVSN---IRWPAIQKEPEQKVWVNENLRADLC 473
Score = 77.0 bits (188), Expect = 1e-14
Identities = 47/259 (18%), Positives = 75/259 (28%), Gaps = 24/259 (9%)
Query: 15 KAKWRPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFDQTKEKVCTDIDIRNYVS 74
NG+C+ CP K P + + + + +
Sbjct: 274 PGHLLRDNGACVRSCPQDKM-DKGGECVPCNGPCPKTCPGVTVLHAGNIDSFRNCTVIDG 332
Query: 75 SFDVLKDCTVVEGFVQINLIDNSTAQDFENIT---FPKLREITEYLSFYHVSGLKSIGKL 131
+ +L V N + F ++EIT YL+
Sbjct: 333 NIRILDQTFSGFQDVYANYTMGPRYIPLDPERLEVFSTVKEITGYLNIEGTHPQFRNLSY 392
Query: 132 FPNLAIIRGNTLIWD-YTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNPDWKRITKKGSV 190
F NL I G L+ + +L + + L I G+VVI N D ++
Sbjct: 393 FRNLETIHGRQLMESMFAALAIVKSSLYSLEMRNLKQISSGSVVIQHNRDLCYVSNIRWP 452
Query: 191 VINDIKSKEACLQEGEPGARSGPEKCEFYWSNNDCQLIKEIE-ECHPLCA-GGCTGKRAE 248
I PE+ + N L ++ C C GC G +
Sbjct: 453 AIQ-----------------KEPEQKVWVNENLRADLCEKNGTICSDQCNEDGCWGAGTD 495
Query: 249 DCFVCIGFIHDGHCLDQCP 267
C C F +G C+ C
Sbjct: 496 QCLNCKNFNFNGTCIADCG 514
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 171 bits (434), Expect = 6e-45
Identities = 106/528 (20%), Positives = 169/528 (32%), Gaps = 108/528 (20%)
Query: 61 EKVCTDIDIRN---------YVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLR 111
+KVC + ++S + +C VV G ++I + + F ++
Sbjct: 4 KKVCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYVQRNYDLSF----LKTIQ 59
Query: 112 EITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIWD-YTFSVFSMFN-----LQEIGLHRL 165
E+ Y+ + + NL IIRGN + Y +V S ++ L+E+ + L
Sbjct: 60 EVAGYVLIALNTVERI---PLENLQIIRGNMYYENSYALAVLSNYDANKTGLKELPMRNL 116
Query: 166 THIMKGTVVILRNP--------DWKRITKKGSVVINDIKSKEACLQEGEPGARSGPEKCE 217
I+ G V NP W+ I + + + + C
Sbjct: 117 QEILHGAVRFSNNPALCNVESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCW 176
Query: 218 FYWSNN---------------DCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHC 262
N C+ + CH CA GCTG R DC VC F + C
Sbjct: 177 GAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATC 236
Query: 263 LDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDK 322
D CPP + T Q + +YS+ ++C N
Sbjct: 237 KDTCPPLMLYNPTTYQMDVNPEGKYSFGATCV---KKCPRN------------------- 274
Query: 323 AKWRPFNGSCMEECPPGYNTTADETS--CVPCPD-CPKVCKGVHVKSIEVARST------ 373
+GSC+ C ++ C C C KVC G+ + + + S
Sbjct: 275 -YVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIK 333
Query: 374 --KGCTVINGSLGIQIQTGD------SEVVHQELEKGLGMITNITGHLKISH-SLPIQSL 424
K CT I+G L I + + + L + ITG L I L
Sbjct: 334 HFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDL 393
Query: 425 SFLKSLQSIHGEREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKK 484
++L+ I G + + +SL V + N+ L S EI
Sbjct: 394 HAFENLEIIRG----------RTKQHGQFSLAV-VSLNITSLGLRSL--------KEISD 434
Query: 485 GKILFHDNPKLCLDKIYELINVTNITYDSDFDVLKESNGDEFICGFSN 532
G ++ N LC + S SN E C +
Sbjct: 435 GDVIISGNKNLCYANTINW---KKLFGTSGQKTKIISNRGENKCKATG 479
Score = 93.5 bits (231), Expect = 9e-20
Identities = 63/362 (17%), Positives = 98/362 (27%), Gaps = 49/362 (13%)
Query: 18 WRPFNGSCMEECPPGKQLIPRDTLQP-QSASNEVSGNSKFDQTKEKVCTDIDIRNYVSSF 76
+GSC+ C + D ++ + E + + F
Sbjct: 276 VVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHF 335
Query: 77 DVLKDCT-----VVEGFVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSGLKSIGKL 131
+ + F + E ++EIT +L ++
Sbjct: 336 KNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHA 395
Query: 132 FPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNPDWKRITKKGSVV 191
F NL IIRG T N+ +GL L I G V+I N
Sbjct: 396 FENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNK------------ 443
Query: 192 INDIKSKEACLQEGEPGARSGPEKCEFYWSNNDCQLIKEIEECHPLCA-GGCTGKRAEDC 250
A + + +K + + + + + CH LC+ GC G DC
Sbjct: 444 ----NLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDC 499
Query: 251 FVCIGFIHDGHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLT-REECLNNKRVTTK 309
C C+D+C G R N C+ ECL T
Sbjct: 500 VSCRNVSRGRECVDKCKLL------------EGEPREFVENSECIQCHPECLPQAMNITC 547
Query: 310 NFPQNMRMSYSDKAKWRPFNGSCMEECPPGY---------NTTADETSCVPC-PDCPKVC 359
+ C++ CP G C C P+C C
Sbjct: 548 TGRGPDNCI---QCAHYIDGPHCVKTCPAGVMGENNTLVWKYADAGHVCHLCHPNCTYGC 604
Query: 360 KG 361
G
Sbjct: 605 TG 606
Score = 33.1 bits (74), Expect = 0.55
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 211 SGPEKCEFYWSNNDCQLIKEIEECHPLCAGGCTGKRAEDCFVC 253
+ ++ + + C CHP C GCTG C
Sbjct: 579 NNTLVWKYADAGHVCH------LCHPNCTYGCTGPGLRGCPTN 615
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 167 bits (422), Expect = 2e-43
Identities = 104/514 (20%), Positives = 167/514 (32%), Gaps = 94/514 (18%)
Query: 59 TKEKVCTDIDIRNYVSSF-DVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYL 117
T + D N + + + C VV G ++I L ++ F +RE+T Y+
Sbjct: 13 TLNGLSVTGDAENQYQTLYKLYERCEVVMGNLEIVLTGHNADLSF----LQWVREVTGYV 68
Query: 118 SFYHVSGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMFN--------LQEIGLHRLTHIM 169
PNL ++RG + +D F++F M N L+++ L +LT I+
Sbjct: 69 LVAMNEFSTLP---LPNLRVVRGTQV-YDGKFAIFVMLNYNTNSSHALRQLRLTQLTEIL 124
Query: 170 KGTVVILRNP--------DWKRITKKGS---VVINDIKSKEACLQEGEPGARSGPEKCEF 218
G V I +N DW+ I + VV ++ +S C + + +
Sbjct: 125 SGGVYIEKNDKLCHMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQ 184
Query: 219 YWSNND--------CQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNL 270
+ C + CH CAGGC+G + DCF C F G C+ +CP L
Sbjct: 185 TLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPL 244
Query: 271 QGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNG 330
N+ E + K + S +
Sbjct: 245 ------------------VYNKLTFQLEPNPHTK------YQYGGVCVASCPHNFVVDQT 280
Query: 331 SCMEECPPGYNTTADETSCVPCPDCPKVCKG---------VHVKSIEVARSTKGCTVING 381
SC+ CPP + P K CT I G
Sbjct: 281 SCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILG 340
Query: 382 SLGIQIQTGDSEVVHQ------ELEKGLGMITNITGHLKISHSLP-IQSLSFLKSLQSIH 434
+L I + + H+ E + ITG+L I P + + S +L +I
Sbjct: 341 NLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIG 400
Query: 435 GEREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPK 494
G S +SL++ N N+ L S EI G+I N +
Sbjct: 401 G----------RSLYNRGFSLLIMKNLNVTSLGFRSL--------KEISAGRIYISANRQ 442
Query: 495 LCLDKIYELINVTNITYDSDFDVLKESNGDEFIC 528
LC V + D+ + +
Sbjct: 443 LCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVA 476
Score = 90.5 bits (223), Expect = 9e-19
Identities = 71/385 (18%), Positives = 121/385 (31%), Gaps = 51/385 (13%)
Query: 12 LSDKAKWRPFNGSCMEECPPGKQLIPRD---TLQPQSASNEVSGNSKFDQTKEKVCTDID 68
S + SC+ CPP K + ++ +P + ++ + +
Sbjct: 269 ASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSN 328
Query: 69 IRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENIT-FPKLREITEYLSFYHVSGLKS 127
I +V+ +L + + + + A D E + F +REIT YL+
Sbjct: 329 IDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMH 388
Query: 128 IGKLFPNLAIIRGNTLIWD-YTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNPDWKRITK 186
+F NL I G +L ++ + N+ +G L I G + I N
Sbjct: 389 NFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHS 448
Query: 187 KGSVVINDIKSKEACLQEGEPGARSGPEKCEFYWSNNDCQ--LIKEIEECHPLCA-GGCT 243
+ GP + +N + + E + C PLC+ GGC
Sbjct: 449 LNWTKVLR-----------------GPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCW 491
Query: 244 GKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLT-REECLN 302
G C C + G C+ C G R C + EC
Sbjct: 492 GPGPGQCLSCRNYSRGGVCVTHCNFL------------NGEPREFAHEAECFSCHPECQP 539
Query: 303 NKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGY--------NTTADETSCVPC-P 353
+ T N + + + C+ CP G + C PC
Sbjct: 540 MEGTATCNGSGSDTCA---QCAHFRDGPHCVSSCPHGVLGAKGPIYKYPDVQNECRPCHE 596
Query: 354 DCPKVCKGVHVK-SIEVARSTKGCT 377
+C + CKG ++ + G T
Sbjct: 597 NCTQGCKGPELQDCLGQTLVLIGKT 621
Score = 44.3 bits (103), Expect = 2e-04
Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 33/184 (17%)
Query: 352 CPDCPKVCKGVHVK-----SIE-----VARSTKGCTVINGSLGIQIQTGDSEVVHQELEK 401
+ VC G E + + + C V+ G+L I + ++++
Sbjct: 3 VGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVMGNLEIVLTGHNADL------S 56
Query: 402 GLGMITNITGHLKISHSLPIQSLSFLKSLQSIHGEREIIRGDTSESSVYSNYSLIVWDNP 461
L + +TG++ ++ + S L +L+ ++RG +++ V N
Sbjct: 57 FLQWVREVTGYVLVAMNE--FSTLPLPNLR-------VVRGTQVYD---GKFAIFVMLNY 104
Query: 462 NLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYELINVTNITYDSDFDVLKES 521
N L EI G + N KLC + I+ +I D D +++ +
Sbjct: 105 NTNSSHALRQL--RLTQLTEILSGGVYIEKNDKLCH---MDTIDWRDIVRDRDAEIVVKD 159
Query: 522 NGDE 525
NG
Sbjct: 160 NGRS 163
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 151 bits (382), Expect = 2e-38
Identities = 99/498 (19%), Positives = 154/498 (30%), Gaps = 98/498 (19%)
Query: 59 TKEKVCTDIDIRNYVSSF-DVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREITEYL 117
T+ K+ + D+ + ++C VV G ++I I+++ F +RE+T Y+
Sbjct: 8 TENKLSSLSDLEQQYRALRKYYENCEVVMGNLEITSIEHNRDLSF----LRSVREVTGYV 63
Query: 118 SFYHVSGLKSIGKLFPNLAIIRGNTLIWD-YTFSVFSMFN------LQEIGLHRLTHIMK 170
+ + NL IIRG L D Y ++F + LQE+GL LT I+
Sbjct: 64 LVALNQ-FRYLP--LENLRIIRGTKLYEDRYALAIFLNYRKDGNFGLQELGLKNLTEILN 120
Query: 171 GTVVILRNP--------DWKRITKKGS---VVINDIKSKEACLQEGE-------PGARSG 212
G V + +N W+ I + + + C + + +
Sbjct: 121 GGVYVDQNKFLCYADTIHWQDIVRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGPTENH 180
Query: 213 PEKCEFYWSNNDCQ----LIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPP 268
+ C + CH CAGGC+G + DCF C+ F G C+ QCP
Sbjct: 181 CQTLTRTVCAEQCDGRCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQCPQ 240
Query: 269 NLQGQVATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPF 328
N E N K + +
Sbjct: 241 TF------------------VYNPTTFQLEHNFNAK------YTYGAFCVKKCPHNFVVD 276
Query: 329 NGSCMEECPPGY------NTTADETSCVPCPDCPKV-----CKGVHVKSIEVARSTKGCT 377
+ SC+ CP + CP CT
Sbjct: 277 SSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCT 336
Query: 378 VINGSLGIQIQTGDS------EVVHQELEKGLGMITNITGHLKISHSLP-IQSLSFLKSL 430
ING+L + E + E + ITG L I P + S +L
Sbjct: 337 KINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNL 396
Query: 431 QSIHGEREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFH 490
+I G +YS SL++ + L S EI G I
Sbjct: 397 VTIGGR-----------VLYSGLSLLILKQQGITSLQFQS--------LKEISAGNIYIT 437
Query: 491 DNPKLCLDKIYELINVTN 508
DN LC + +
Sbjct: 438 DNSNLCYYHTINWTTLFS 455
Score = 79.3 bits (194), Expect = 3e-15
Identities = 58/370 (15%), Positives = 108/370 (29%), Gaps = 53/370 (14%)
Query: 12 LSDKAKWRPFNGSCMEECPPGKQLIPRDTLQPQSASNE-----VSGNSKFDQTKEKVCTD 66
+ + SC+ CP K + + ++ + G +
Sbjct: 267 KKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDS 326
Query: 67 IDIRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENI-TFPKLREITEYLSFYHVSGL 125
+I +++ + + + + + + A D E + F +REIT +L+
Sbjct: 327 SNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPN 386
Query: 126 KSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNPDWKRIT 185
+ +F NL I G L + + + + L I G + I N +
Sbjct: 387 MTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNL---- 442
Query: 186 KKGSVVINDIKSKEACLQEGEPGARSGPEKCEFYWSNNDCQLIKEIEECHPLCA-GGCTG 244
+ ++ + E C+ LC+ GC G
Sbjct: 443 ------------CYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWG 490
Query: 245 KRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATLQRILYGGIRYSYMNRRCLTR----EEC 300
+ C C F C++ C G R + C+ E+
Sbjct: 491 PGPDQCLSCRRFSRGRICIESCNLY------------DGEFREFENDSICVECDPQCEKM 538
Query: 301 LNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNTTAD--------ETSCVPC 352
+ P N K +C+E+CP G + C PC
Sbjct: 539 EDGLLTCHGPGPDN-----CTKCSHFKDGPNCVEKCPDGLQGANSFIFKYADPDRECHPC 593
Query: 353 -PDCPKVCKG 361
P+C + C G
Sbjct: 594 HPNCTQGCNG 603
Score = 33.1 bits (74), Expect = 0.54
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 216 CEFYWSNNDCQLIKEIEECHPLCAGGCTGKRAEDCFVC 253
++ + +C CHP C GC G + DC
Sbjct: 581 FKYADPDRECH------PCHPNCTQGCNGPTSHDCIYY 612
>3p0y_A Epidermal growth factor receptor; beta-sandwich, antigens EGFR,
immune system; HET: NAG FUL; 1.80A {Homo sapiens} PDB:
3b2u_A* 3c09_A*
Length = 214
Score = 134 bits (339), Expect = 5e-36
Identities = 49/234 (20%), Positives = 77/234 (32%), Gaps = 52/234 (22%)
Query: 62 KVCTDIDIRN-------YVSSFDVLKDCTVVEGFVQINLI-------DNSTAQDFENI-T 106
KVC I I ++ K+CT + G + I + ++ D + +
Sbjct: 2 KVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDI 61
Query: 107 FPKLREITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLT 166
++EIT +L ++ F NL IIRG T N+ +GL L
Sbjct: 62 LKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLK 121
Query: 167 HIMKGTVVILRNP--------DWKRITKKGS--VVINDIKSKEACLQEGEPGARSGPEKC 216
I G V+I N +WK++ I + + +C G+
Sbjct: 122 EISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENSCKATGQV--------- 172
Query: 217 EFYWSNNDCQLIKEIEECHPLC-AGGCTGKRAEDCFVCIGFIHDGHCLDQCPPN 269
CH LC GC G DC C C+D+ +
Sbjct: 173 -----------------CHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKGNSH 209
Score = 71.4 bits (174), Expect = 4e-14
Identities = 38/187 (20%), Positives = 59/187 (31%), Gaps = 37/187 (19%)
Query: 357 KVCKGVHVKSIEVARST--------KGCTVINGSLGIQIQTGD------SEVVHQELEKG 402
KVC G+ + + + S K CT I+G L I + + +
Sbjct: 2 KVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDI 61
Query: 403 LGMITNITGHLKISHSLPIQS-LSFLKSLQSIHGEREIIRGDTSESSVYSNYSLIVWDNP 461
L + ITG L I ++ L ++L+ I G + + +
Sbjct: 62 LKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGR-----------TKQHGQFSLAVVSL 110
Query: 462 NLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYELINVTNITYDSDFDVLKES 521
N+ L S EI G ++ N LC IN + S S
Sbjct: 111 NITSLGLRSLK--------EISDGDVIISGNKNLCY---ANTINWKKLFGTSGQKTKIIS 159
Query: 522 NGDEFIC 528
N E C
Sbjct: 160 NRGENSC 166
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 83.7 bits (207), Expect = 2e-18
Identities = 35/186 (18%), Positives = 72/186 (38%), Gaps = 29/186 (15%)
Query: 531 SNLALVVLNKTDVSIRFQ---LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGW 587
+ +L+ + I + L +++K+ D++ Y + + + +
Sbjct: 9 VGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRW--------------KTNIPANT 54
Query: 588 KFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTL---PTKPSIPYQF 643
K+K+ N+ + V L+P T Y F V + +R S + TT PT P
Sbjct: 55 KYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTV 114
Query: 644 EVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVD------KLRDL 697
++ + W P +G + Y+I Y D + + D V ++++L
Sbjct: 115 VSKEGKPKTIIVNWQPPSEANGKITGYIIY-YSTDVNAEIHDWVIEPVVGNRLTHQIQEL 173
Query: 698 S-DSTY 702
+ D+ Y
Sbjct: 174 TLDTPY 179
Score = 55.2 bits (133), Expect = 1e-08
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 852 SLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS----G 907
++ + + + W PPS NG I Y I Y + + +R +
Sbjct: 113 TVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQE 172
Query: 908 LYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAE 945
L Y F+++ + G GP + A
Sbjct: 173 L----TLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAH 206
Score = 48.3 bits (115), Expect = 3e-06
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 858 INASALRIRWHPPSRP----NGIIVAYNIEYKRESGGNSENMCRTRKDID-RDSGLYLYD 912
++ +RI W S P Y + +K N++ + +GL
Sbjct: 16 LSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGL---- 71
Query: 913 YPAGSYLFRLRVVSLGGEGPWTSWKPC 939
P Y F + V W+
Sbjct: 72 KPNTLYEFSVMVTKGRRSSTWSMTAHG 98
Score = 32.9 bits (75), Expect = 0.33
Identities = 4/41 (9%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Query: 637 PSIPYQFEVVRVNSSSVTLRWGEPKHP----HGILEKYVIK 673
P + ++ ++ + W + P Y ++
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVR 45
Score = 32.5 bits (74), Expect = 0.40
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 18/93 (19%)
Query: 531 SNLALVVLNKTDVSIRFQ----LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASG 586
++ +V +I N K+ Y+++Y N
Sbjct: 110 KDVTVVSKEGKPKTIIVNWQPPSEANGKI---TGYIIYYSTDVNA-----------EIHD 155
Query: 587 WKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
W + + T ++ L T Y F ++ NS
Sbjct: 156 WVIEPVVGNRLTHQIQELTLDTPYYFKIQARNS 188
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 81.4 bits (201), Expect = 2e-17
Identities = 31/184 (16%), Positives = 55/184 (29%), Gaps = 23/184 (12%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVP-DNQRYVLFYMKADNGMYTDFDTVGSCSASGWKF 589
N + + Y + Y + S +
Sbjct: 10 QNPNAKAAGSRKIHFNW-----LPPSGKPMGYRVKYWIQGD--------------SESEA 50
Query: 590 KDINSKNKTVEVMNLEPATEYAFFVKIYNSQ-RIVRSNISLQTTLPTKPSIPYQFEVVRV 648
++SK +VE+ NL P +Y V Y +Q S++ T PS P + V
Sbjct: 51 HLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVV 110
Query: 649 NSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLRDLSDSTYAASHLM 708
+S+ L W EP +G + Y + Y + D + + + +L
Sbjct: 111 SSTVTQLSWAEPAETNGEITAYEV--CYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLR 168
Query: 709 RFAK 712
Sbjct: 169 ESQP 172
Score = 65.2 bits (159), Expect = 8e-12
Identities = 19/112 (16%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 852 SLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLY 911
L F +++++ ++ W P+ NG I AY + Y ++ + +K + + +
Sbjct: 104 RLAFNVVSSTVTQLSWAEPAETNGEITAYEVCY-GLVNDDNRPIGPMKKVLVDNPKNRML 162
Query: 912 D----YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYVIVVVTGL 959
+ Y + ++ + G GP + + PMS+ +I + +
Sbjct: 163 LIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIV 214
Score = 50.9 bits (122), Expect = 5e-07
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 858 INASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMC----RTRKDIDRDSGLYLYDY 913
+ + W PP +G + Y ++Y + SE ++ + L Y
Sbjct: 17 AGSRKIHFNWLPP---SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVEL---TNL----Y 66
Query: 914 PAGSYLFRLRVVSLGGEGPWTSWKPC 939
P Y ++ GEGP++S C
Sbjct: 67 PYCDYEMKVCAYGAQGEGPYSSLVSC 92
Score = 43.2 bits (102), Expect = 1e-04
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 22/136 (16%)
Query: 531 SNLALVVLNKTDVSIRFQ--LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWK 588
LA V++ T + + N ++ Y + Y ++ K
Sbjct: 103 GRLAFNVVSSTVTQLSWAEPAETNGEI---TAYEVCYGLVNDD--------NRPIGPMKK 151
Query: 589 FKDINSKNKTVEVMNLEPATEYAFFVKIYN-------SQRIVRSNISLQTTLPTKPSIPY 641
N KN+ + + NL + Y + VK N + I+ N++ Q P I
Sbjct: 152 VLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAII--NLATQPKRPMSIPIIP 209
Query: 642 QFEVVRVNSSSVTLRW 657
+V S +
Sbjct: 210 DIPIVDAQSGEDYDSF 225
Score = 31.7 bits (72), Expect = 0.84
Identities = 10/74 (13%), Positives = 14/74 (18%), Gaps = 12/74 (16%)
Query: 634 PTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDK 693
P S + W P G Y + Y +
Sbjct: 5 DLGA--PQNPNAKAAGSRKIHFNW---LPPSGKPMGYRV--KYWIQGDSESEAHLLDSKV 57
Query: 694 ----LRDLS-DSTY 702
L +L Y
Sbjct: 58 PSVELTNLYPYCDY 71
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 65.9 bits (161), Expect = 5e-13
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD--- 905
P + F + +++R+ W PP+ PNGII+AY I ++ + + R
Sbjct: 30 PPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTA 89
Query: 906 SGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
+GL P YLFR+ + G G E P S
Sbjct: 90 TGL----KPESVYLFRITAQTRKGWGEAAEALVVTTEKRSGPSS 129
Score = 54.3 bits (131), Expect = 7e-09
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
TL P P V ++SV L W P P+GI+ Y I ++
Sbjct: 22 RTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQI--THRLNTTT 71
Score = 30.4 bits (69), Expect = 1.2
Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 26/116 (22%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQR-----YVLFYMKADNGMYTDFDTVGSCSAS 585
+ + T V + +Q P Y + + +A+
Sbjct: 32 MGILFPEVRTTSVRLIWQ------PPAAPNGIILAYQITHRLNTT------------TAN 73
Query: 586 GWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKPSIP 640
+ + + L+P + Y F + + + + TT K S P
Sbjct: 74 TATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT--EKRSGP 127
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 71.0 bits (173), Expect = 1e-12
Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 12/175 (6%)
Query: 531 SNLALVVLNKTDVSIRFQ-LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKF 589
L +V + ++IR++ N + + Y G + V
Sbjct: 364 RKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEV---------S 414
Query: 590 KDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVR-V 648
D + + + NL P T + + + N + S + T P +
Sbjct: 415 WDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGST 474
Query: 649 NSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLRDLSDSTYA 703
+ L+W EP +G++ Y I Y D + ++ L + T+
Sbjct: 475 FEEKIFLQWREPTQTYGVITLYEIT-YKAVSSFDPEIDLSNQSGRVSKLGNETHF 528
Score = 60.6 bits (146), Expect = 2e-09
Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)
Query: 830 SEETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESG 889
S+E +V + ++ + ++W P++ G+I Y I YK S
Sbjct: 450 SQELIVQTDEDLP----GAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSS 505
Query: 890 GNSENMCRTRKDIDRDSGLYLYD-----YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESA 944
+ E + G + YP +Y F +R + G GP + + SA
Sbjct: 506 FDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISA 565
Query: 945 ET--PMSVYVIVVVTGLVIL 962
+ + + T +
Sbjct: 566 PSMPAYELETPLNQTDNTVT 585
Score = 57.9 bits (139), Expect = 1e-08
Identities = 43/344 (12%), Positives = 88/344 (25%), Gaps = 35/344 (10%)
Query: 379 INGSLGIQIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHGERE 438
I+G + + + IT L I + L +
Sbjct: 112 ISGDPTRTWNRAELAISTFWPNFYQVIFEVITS--GHQGYLAIDEVKVLGHPCTRTPHFL 169
Query: 439 IIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLD 498
I+ + ++ + + + P EIK + +
Sbjct: 170 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK---VTSSRRFIASFN 226
Query: 499 KIYELINVTNITY------DSDFDVLKESNGDEFICGFSNLALVVLNKTDVSIRFQLNEN 552
+ Y + + + + + + QLN N
Sbjct: 227 -VVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNAN 285
Query: 553 EKVPD--NQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEY 610
D + Y A W + + + ++ +L+P TEY
Sbjct: 286 SINGDGPIVAREVEYCTAS---------------GSWNDRQ-PVDSTSYKIGHLDPDTEY 329
Query: 611 AFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQ----FEVVRVNSSSVTLRWGEPKHPHGI 666
V + + TK + P + EVV V S +T+RW +
Sbjct: 330 EISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTR 389
Query: 667 LEKYVIKAYYQDYDKDYLDTRNYCVDKLRDLSDSTYAASHLMRF 710
Y + +Y + V + S + ++L +
Sbjct: 390 CHSYNLTVHYCYQVGG-QEQVREEVSWDTENSHPQHTITNLSPY 432
Score = 54.4 bits (130), Expect = 1e-07
Identities = 17/156 (10%), Positives = 44/156 (28%), Gaps = 15/156 (9%)
Query: 531 SNLALVVLNKTDVSIRFQ--LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWK 588
+ + + ++++ + Y + Y + ++
Sbjct: 467 TESIQGSTFEEKIFLQWREPTQTYGVI---TLYEITYKAVSS------FDPEIDLSNQSG 517
Query: 589 FKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRV 648
L P T Y+F ++ ++ + TT + PS+P +
Sbjct: 518 RVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPL 577
Query: 649 NSS--SVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
N + +VT+ + Y I ++
Sbjct: 578 NQTDNTVTVMLKPAHSRGAPVSVYQI--VVEEERPR 611
Score = 54.4 bits (130), Expect = 2e-07
Identities = 22/174 (12%), Positives = 45/174 (25%), Gaps = 20/174 (11%)
Query: 789 PETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEVDHLADTI 848
TSY + L ++ R + P R
Sbjct: 314 DSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCA------------DPMR 361
Query: 849 PADSLNFEMINASALRIRWHPPSRP--NGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS 906
L + + + IRW P + Y + GG + D +
Sbjct: 362 GPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSH 421
Query: 907 GLYLYD--YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAE-TPMSVYVIVVVT 957
+ P + +L +++ G ++++ E P +V +
Sbjct: 422 PQHTITNLSPYTNVSVKLILMNPEGRKESQEL---IVQTDEDLPGAVPTESIQG 472
Score = 42.5 bits (99), Expect = 6e-04
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 848 IPADSLNFEMINASALRIRWHPPS-RPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS 906
+P + A+ L I+ + S +G IVA +EY SG ++ R+ +D S
Sbjct: 263 VPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWND-----RQPVDSTS 317
Query: 907 GLYLYDYPAGSYLFRLRVVSLGGEGP 932
+ P Y + + G G
Sbjct: 318 YKIGHLDPDTEYEISVLLTRPGEGGT 343
Score = 41.7 bits (97), Expect = 0.001
Identities = 20/187 (10%), Positives = 34/187 (18%), Gaps = 53/187 (28%)
Query: 789 PETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEVDHLADTI 848
ET + GL + FTI A + G T++
Sbjct: 524 NETHFLFFGLYPGTTYSFTIRASTAK------------G-FGPPATNQFTTKIS-APSMP 569
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRK-------- 900
+ + + + P + Y I + E ++ K
Sbjct: 570 AYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHF 629
Query: 901 DIDRDSGLYLYDY-------------------------------PAGSYLFRLRVVSLGG 929
Y P SY + S
Sbjct: 630 QNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRAN 689
Query: 930 EGPWTSW 936
Sbjct: 690 GETKIDC 696
Score = 36.3 bits (83), Expect = 0.056
Identities = 16/114 (14%), Positives = 29/114 (25%), Gaps = 13/114 (11%)
Query: 550 NENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATE 609
+N + ++Q Y AD+ T+G N L P
Sbjct: 629 FQNASLLNSQYYFAAEFPADSLQAAQPFTIGD-----------NKTYNGYWNTPLLPYKS 677
Query: 610 YAFFVKIYNSQRI-VRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKH 662
Y + + + + + T P E + +V H
Sbjct: 678 YRIYFQAASRANGETKIDCVQVATKGAATPKPVP-EPEKQTDHTVKGTKHHHHH 730
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.7 bits (172), Expect = 2e-12
Identities = 96/658 (14%), Positives = 191/658 (29%), Gaps = 167/658 (25%)
Query: 224 DCQLIKEI-------EECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVAT 276
DC+ ++++ EE + F + L Q
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL---------------LSKQEEM 78
Query: 277 LQRILYGGIRYSY---MNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCM 333
+Q+ + +R +Y M+ + E + T+ + + Y+D + +N
Sbjct: 79 VQKFVEEVLRINYKFLMSP---IKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAKYN---- 130
Query: 334 EECPPGYNTTADETSCVPCPDCPKVCKGVHVKSIEVARSTKGCTVINGSLGI-----QIQ 388
V + +++ R K +I+G LG +
Sbjct: 131 ----------------VSRLQPYLKLR----QALLELRPAKN-VLIDGVLGSGKTWVALD 169
Query: 389 TGDSEVVHQELEKG---------------LGMITNITGHLKISHSLPIQSLSFLKSLQSI 433
S V +++ L M+ + +I + +S I
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRI 227
Query: 434 HGEREIIRGDTSESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNP 493
H + +R +S Y N L+V N +Q W+ F +
Sbjct: 228 HSIQAELR-RLLKSKPYEN-CLLVLLN--VQNAKAWN--------AFNLS---------- 265
Query: 494 KLCLDKIYELINVTNITYD-SDFDVLKESNGDEFICGFSNLALVVLNKTDVSIRFQLNEN 552
C KI L+ T D L + ++ L + +++
Sbjct: 266 --C--KI--LL----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 553 EKVPDNQRYVLFYMKADN----GMYTDFDTVGSCSASGWKFKDINSKNKTVE--VMNLEP 606
+ +P + N + + G + WK + + +E + LEP
Sbjct: 316 QDLPRE-------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 607 ATEYAFFVK--IYNSQRIVRSNISLQTTLPT----KPSIPYQFEVVRVNSSSVTLRWGEP 660
A F + ++ ++I L V +++ S+ + +
Sbjct: 369 AEYRKMFDRLSVFPPS----AHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 661 K--HPHGILEKYVIKAYYQDYDKD--------YLDTRNYCVDKLRDLSDSTYAASHLMRF 710
I + +K + + Y + + D L Y SH+
Sbjct: 424 STISIPSIYLELKVKL---ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 711 AKTTRKPLKECCGKFP---CDF---------DHESFQYMTSQMQLIQQCDNYIFKYLQYN 758
K P + F DF D ++ S + +QQ Y Y+ N
Sbjct: 481 LKNIEHPERM--TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PYICDN 537
Query: 759 DLHKAYGGDLPSLGNISSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQK 816
D Y + ++ + LP EEN + T + L +F A ++ Q+
Sbjct: 538 DPK--YERLVNAILDF---LPKIEENLICSKYTDLLRIALMAEDEAIF-EEAHKQVQR 589
Score = 59.9 bits (144), Expect = 4e-09
Identities = 80/589 (13%), Positives = 147/589 (24%), Gaps = 208/589 (35%)
Query: 410 TGHLKISHS--LPIQSLSFLK---------SLQSIHGERE---IIRGDTSESSVYSNYSL 455
TG + + L + +F+ +SI + E II + S
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL----R 66
Query: 456 IVW---DNPN----------LQELWGW--------SNLPDGQRPKFEIKKGKILFHDNPK 494
+ W L+ + + P + ++ + L++DN
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQV 125
Query: 495 LCLDKIYELINVTNITYDSDFDVLKESNGDEFI-------CGFSNLALVVLNKTDVSIRF 547
+ L + L E + + G + +AL V V +
Sbjct: 126 FAKYNVSRLQPYLKLR-----QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 548 QLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVM-NLEP 606
+F++ + +C NS +E++ L
Sbjct: 181 --------DFK----IFWL-----------NLKNC----------NSPETVLEMLQKL-- 205
Query: 607 ATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLR--WGEPKHPH 664
+ S+ SNI L R++S LR + +
Sbjct: 206 ---LYQIDPNWTSRSDHSSNIKL-----------------RIHSIQAELRRLLKSKPYEN 245
Query: 665 GIL------EKYVIKAYYQDY---------DK---DYLDTRNYCVDKLRDLSDSTYAASH 706
+L A+ + K D+L L S +
Sbjct: 246 CLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 707 LMRFAKTTRKPLK----ECCGKFP--CDFDHESFQYMTSQMQLIQQCDNYIFKYLQYNDL 760
K + E P ES + + DN+ K++ + L
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW------DNW--KHVNCDKL 355
Query: 761 HKAYGGDLPSLGNISSRLPDREENDVLYPETSYTMVGLGHFRSI-VFTISACRKEQKDKF 819
I S L +VL P M F + VF
Sbjct: 356 TTI----------IESSL------NVLEPAEYRKM-----FDRLSVF------------- 381
Query: 820 LPYDPEEGRCSEETLV-----MSRTEVDHLADTIPADSL----NFEM---INASALRIRW 867
P L + +++V + + + SL E I + L ++
Sbjct: 382 ----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 868 HPPSRP---NGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDY 913
+ I+ YNI +S Y Y +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLI---------PPYLDQ-YFYSH 476
Score = 53.7 bits (128), Expect = 3e-07
Identities = 38/324 (11%), Positives = 86/324 (26%), Gaps = 84/324 (25%)
Query: 18 WRPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNS-------KFDQTKEKVCTDIDIR 70
W +C P L L Q N S + + + ++ + +
Sbjct: 186 WLNL-KNCNS---PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 71 NYVSSFDVL---KDCTVVEGF---VQINLI---DNSTAQDFENITFPKLREITEYLSFYH 121
Y + VL ++ F +I L+ T + ++
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 122 VSGLK--------SIGKLFPN---------LAII----RGNTLIWDYTFSVFSMFNLQEI 160
L P L+II R WD + +
Sbjct: 301 DEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDN---------WKHV 350
Query: 161 GLHRLTHIMKGTVVILRNPDWKRITKKGSVVINDIKSKEACLQEGEPGARSGPEKCEFYW 220
+LT I++ ++ +L +++++ + SV L W
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL--------------SLIW 396
Query: 221 SN---NDCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGFIHDGHCLDQCPPNLQGQVATL 277
+ +D ++ + + H K+ ++ + I + + L
Sbjct: 397 FDVIKSDVMVV--VNKLHKYS---LVEKQPKESTI---SIPSIYLELKVKLE---NEYAL 445
Query: 278 QRILYGGIRYSYMNRRCLTREECL 301
R + Y + ++ +
Sbjct: 446 HRSIVD----HYNIPKTFDSDDLI 465
Score = 49.5 bits (117), Expect = 6e-06
Identities = 103/714 (14%), Positives = 204/714 (28%), Gaps = 209/714 (29%)
Query: 56 FDQTKEKV-CTDIDIRNYVSSFDVLKDCTVVEGFVQINLIDNSTAQDFENITFPKLREIT 114
F+ + + DI + + +F DC V+ + L + ++ ++I K
Sbjct: 9 FETGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSIL----SKEEIDHIIMSKDAVSG 63
Query: 115 EYLSFYHV-SGLKSIGKLFPNLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTV 173
F+ + S + + + F L +Y F + S ++ +T +
Sbjct: 64 TLRLFWTLLSKQEEMVQKF------VEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQ- 115
Query: 174 VILRNPDWK--RITKKGSVVINDIKSK-EACLQEGEPGAR--------SGPEKCEFYWSN 222
R+ + ++ K +V K L E P SG
Sbjct: 116 ---RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---------- 162
Query: 223 NDCQLIKEIEECHPLCAGGCTGKRAEDCFVCIGF-IHDGHCLDQCPPNLQGQVATLQRIL 281
K + C + + F ++ +C P + + LQ++L
Sbjct: 163 ------KTW-----VALDVCLSYKVQCKMDFKIFWLNLKNC--NSPETV---LEMLQKLL 206
Query: 282 Y-----GGIRYSYMNRRCLTREECLNNKR--VTTKNFPQ------NMRMSYSDKAKWRPF 328
Y R + + L R + +K + N++ + W F
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ----NAKAWNAF 262
Query: 329 NGSC---MEECPPGYNTTADETSCVPCPDCPKVCKGVHVKSIEVARSTKGCTVINGSLGI 385
N SC + TT + V A +T ++ + S+ +
Sbjct: 263 NLSCKILL--------TTRFKQ----------------VTDFLSAATTTHISLDHHSMTL 298
Query: 386 QIQTGDSEVVHQELEKGLGMITNITGHLKISHSLPIQSLSFLKSLQSIHGEREIIRGDTS 445
++ ++ LP + L+ SI E T
Sbjct: 299 ------------TPDEVKSLLLKYLDC--RPQDLPREVLTTNPRRLSIIAESIRDGLAT- 343
Query: 446 ESSVYSNYSLIVWDNPNLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLD------- 498
WDN W + + K I+ + L+
Sbjct: 344 ------------WDN--------W------KHVNCD-KLTTII-----ESSLNVLEPAEY 371
Query: 499 -KIYELINV----TNITYDSDFDVL-------KESNGDEFICGFSNLALVVLNKTDVSIR 546
K+++ ++V +I +L +S+ + +LV + +I
Sbjct: 372 RKMFDRLSVFPPSAHIPTI----LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 547 F---QLNENEKVPD----NQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTV 599
L K+ + ++ V Y + D D + + + I
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKT--F-DSDDLIPPYLDQYFYSHIGH----- 479
Query: 600 EVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGE 659
+ N+E F ++ R + I +T S TL
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG-----------SILNTL---- 524
Query: 660 PKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLRDLSDSTYAASH--LMRFA 711
L+ Y K Y D D Y N +D L + ++ + + L+R A
Sbjct: 525 -----QQLKFY--KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Score = 48.7 bits (115), Expect = 1e-05
Identities = 55/359 (15%), Positives = 117/359 (32%), Gaps = 95/359 (26%)
Query: 1 MNADRKNSVVELSD---KAKWRPFNGSCMEECPPGKQLIPRDTLQPQSASNEVSGNSKFD 57
+ +N ++ L + W FN SC K L+ T + + ++ +S +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSC-------KILL---TTRFKQVTDFLSAATTTH 288
Query: 58 QTKEKVC---TDIDIRNYVSSF-DVLKDC---TVVEGF-VQINLI------DNSTAQDFE 103
+ + T ++++ + + D V+ ++++I +T +++
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 104 NITFPKLREITEYLSFYHVSGLKSIGKLFPNLAIIRGNTLI--------WDYTFSVFSMF 155
++ KL I E S +V K+F L++ + I W M
Sbjct: 349 HVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 156 NLQEIGLHRLTHIMKGTVVILRNPDWKRITKKGSVVINDIKSKEACLQEGEPGARSGPEK 215
+ + LH+ + ++ + P K+ ++ I I + K
Sbjct: 407 VVNK--LHKYS-------LVEKQP------KESTISIPSIYLELKV-------------K 438
Query: 216 CEFYWSNNDCQLIKEIEECHPLCAGGCT---GKRAEDCFVCIGFIHDGHCLDQCPPNLQG 272
E N+ L + I + + + + D + + H GH L
Sbjct: 439 LE-----NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF---YSHIGHHLKNI---EHP 487
Query: 273 QVATLQRILY-------GGIRYSYMNRRCLTREECLNN-------KRVTTKNFPQNMRM 317
+ TL R+++ IR+ LN K N P+ R+
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNA--SGSILNTLQQLKFYKPYICDNDPKYERL 544
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 62.4 bits (152), Expect = 5e-12
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDID--RDS 906
+ E +++ + W P +PNGII+ Y I+Y E ++ + S
Sbjct: 13 QVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKY-YEKDKEMQSYSTLKAVTTRATVS 71
Query: 907 GLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
GL P Y+F++R + G G ++ P S
Sbjct: 72 GL----KPGTRYVFQVRARTSAGCGRFSQAMEVETGKPSGPSS 110
Score = 57.4 bits (139), Expect = 3e-10
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYC 690
++ PS R +SV+L W EP+ P+GI+ +Y I Y + DK+
Sbjct: 5 SSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEI--KYYEKDKEMQSYSTLK 62
Query: 691 VDK----LRDLS-DSTY 702
+ L + Y
Sbjct: 63 AVTTRATVSGLKPGTRY 79
Score = 31.9 bits (73), Expect = 0.28
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 27/115 (23%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQ-----RYVLFYMKADNGMYTDFDTVGSCSAS 585
+ +T VS+ +Q P+ Y + Y + D M
Sbjct: 15 VVIRQERAGQTSVSLLWQ------EPEQPNGIILEYEIKYYEKDKEM------------- 55
Query: 586 GWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSN-ISLQTTLPTKPS 638
+ + + V L+P T Y F V+ S S + ++T P+ PS
Sbjct: 56 -QSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKPSGPS 109
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 67.5 bits (164), Expect = 1e-11
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 5/130 (3%)
Query: 560 RYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
Y + + S + +V V +LEP Y F V+ N
Sbjct: 366 VYSVTCEQCWPESGECGPCEASVR---YSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNG 422
Query: 620 Q-RIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQD 678
+V S ++ + P + + +++S+++ W P + KY + Y +
Sbjct: 423 VSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVT-YRKK 481
Query: 679 YDKDYLDTRN 688
D + + R
Sbjct: 482 GDSNSYNVRR 491
Score = 60.2 bits (145), Expect = 2e-09
Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 19/150 (12%)
Query: 790 ETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEVDHLADTIP 849
TS T+ L + FT+ A + + +
Sbjct: 399 RTSVTVSDLEPHMNYTFTVEARNGV------------SGLVTSRSFRTASVSINQT---E 443
Query: 850 ADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLY 909
+ E + ++L + W P + Y + Y+++ NS N+ RT L
Sbjct: 444 PPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDL- 502
Query: 910 LYDYPAGSYLFRLRVVSLGGEGPWTSWKPC 939
P +YL +++ ++ G+G +
Sbjct: 503 ---APDTTYLVQVQALTQEGQGAGSKVHEF 529
Score = 39.8 bits (92), Expect = 0.004
Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 11/101 (10%)
Query: 858 INASALRIRWHPPSRPNGI-IVAYNIEYKRESGGNSENMC--RTRKDIDRDSGLYLYDY- 913
+ + +RW PP G + Y++ ++ + E + + + GL
Sbjct: 344 GMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVT 403
Query: 914 -----PAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
P +Y F + + + S +
Sbjct: 404 VSDLEPHMNYTFTVEARNGVSGLVTSR--SFRTASVSINQT 442
Score = 38.6 bits (89), Expect = 0.009
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 624 RSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHG 665
R+ + T+P + + V LRW P+ G
Sbjct: 320 RAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGG 361
Score = 29.4 bits (65), Expect = 7.0
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLP 634
+ ++ +V + +L P T Y V+ + S + TL
Sbjct: 483 DSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLS 533
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 65.6 bits (160), Expect = 1e-11
Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 14/127 (11%)
Query: 556 PDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVK 615
++Y+L + + D W+ ++ + ++T NL + Y V
Sbjct: 126 ESVKKYILEWCVLSDKAPCITD---------WQ-QEDGTVHRTYLRGNLAESKCYLITVT 175
Query: 616 IYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEP--KHPHGILEKYVIK 673
+ PS +V + L W + +G + Y I
Sbjct: 176 PVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTI- 234
Query: 674 AYYQDYD 680
+Y+
Sbjct: 235 -FYRTII 240
Score = 48.3 bits (115), Expect = 6e-06
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 6/90 (6%)
Query: 849 PADSLNFEMINASALRIRWHPPSR--PNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS 906
++ + + + + W NG I Y I Y+ G + + S
Sbjct: 199 KGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLS 258
Query: 907 GLYLYDYPAGSYLFRLRVVSLGGEGPWTSW 936
L Y+ R+ + G +
Sbjct: 259 SL----TSDTLYMVRMAAYTDEGGKDGPEF 284
Score = 44.0 bits (104), Expect = 1e-04
Identities = 14/123 (11%), Positives = 34/123 (27%), Gaps = 10/123 (8%)
Query: 593 NSKNKTVEVMNLE---PATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVN 649
+ +N TV L Y + + N + + + + P
Sbjct: 54 HLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPK 113
Query: 650 SSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLRDLSDSTYAASHLMR 709
+ + + W P ++KY++ + ++ + TY +L
Sbjct: 114 DNMLWVEW---TTPRESVKKYIL--EWCVLSDKAPCITDW--QQEDGTVHRTYLRGNLAE 166
Query: 710 FAK 712
Sbjct: 167 SKC 169
Score = 42.1 bits (99), Expect = 5e-04
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 10/82 (12%)
Query: 856 EMINASALRIRWHP--PSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDY 913
+++ W P NG I+ Y + R K +
Sbjct: 18 HTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATK--------LTVNL 69
Query: 914 PAGSYLFRLRVVSLGGEGPWTS 935
YL L V +L G+
Sbjct: 70 TNDRYLATLTVRNLVGKSDAAV 91
Score = 38.6 bits (90), Expect = 0.007
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 858 INASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD--YPA 915
+ L + W P + Y +E+ + + +++ YL +
Sbjct: 112 PKDNMLWVEWTTP---RESVKKYILEW-CVLSDKAPCITDWQQEDGTVHRTYLRGNLAES 167
Query: 916 GSYLFRLRVVSLGGEGPWTSW 936
YL + V G G S
Sbjct: 168 KCYLITVTPVYADGPGSPESI 188
Score = 32.1 bits (73), Expect = 0.84
Identities = 10/94 (10%), Positives = 27/94 (28%), Gaps = 26/94 (27%)
Query: 532 NLALVVLNKTDVSIRFQLNENEKVPDNQR------YVLFYMKADNGMYTDFDTVGSCSAS 585
+ + K + + + ++P + + Y +FY
Sbjct: 202 TVRTKKVGKNEAVLEWD-----QLPVDVQNGFIRNYTIFYRTII---------------G 241
Query: 586 GWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
+++S + + +L T Y + Y
Sbjct: 242 NETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTD 275
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 60.9 bits (148), Expect = 2e-11
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKR-ESGGNSENMCRTRKDIDRDSG 907
++ ++ + W P +PNGII+ Y I Y E + +M R++ + R G
Sbjct: 10 TVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDG 69
Query: 908 LYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
L P Y+ ++R ++ G G ++ + P S
Sbjct: 70 L----RPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGPSS 107
Score = 55.5 bits (134), Expect = 1e-09
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDY 683
++ + PS V S+TL W +P+ P+GI+ Y I+ YY+ ++
Sbjct: 2 SSGSSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIR-YYEKEHNEF 53
Score = 30.1 bits (68), Expect = 1.0
Identities = 9/55 (16%), Positives = 14/55 (25%), Gaps = 1/55 (1%)
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKPS 638
+ + S+ T + L P Y V+ S TL
Sbjct: 51 NEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGP 105
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 65.8 bits (160), Expect = 4e-11
Identities = 48/374 (12%), Positives = 102/374 (27%), Gaps = 65/374 (17%)
Query: 587 WKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVR----SNISLQTTLPTKPSIPYQ 642
+D S + V +L+P TEY F ++ S + T +PS
Sbjct: 249 IPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPS 308
Query: 643 F-----EVVRVNSSSVTLRWGE--PKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLR 695
F +V L W P +G + Y + + +NY V+ +
Sbjct: 309 FWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEV--TLTRWKSH---LQNYTVNATK 363
Query: 696 ---DLSDSTYAASHLMR----FAKTTRKPLKECCGKFPCDFDHESFQYMTSQMQL----- 743
+L++ Y A+ +R + + C + + + +
Sbjct: 364 LTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTP 423
Query: 744 IQQCDNYIFKYLQYNDLHKAYGGDLPSLGNISSRLPDREENDVLYPETSYTMVGLGHFRS 803
+ YI ++ P + + + + +Y L +
Sbjct: 424 RESVKKYILEW-------CVLSDKAPCITD--------WQQEDGTVHRTYLRGNLAESKC 468
Query: 804 IVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEVDHLADTIPADSLNFEMINASAL 863
+ T++ + + + ++ + + +
Sbjct: 469 YLITVTPVY-------------ADGPGSPESIKAYLKQA---PPSKGPTVRTKKVGKNEA 512
Query: 864 RIRWH--PPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAGSYLFR 921
+ W P NG I Y I Y+ G + + S L Y+ R
Sbjct: 513 VLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSL----TSDTLYMVR 568
Query: 922 LRVVSLGGEGPWTS 935
+ + G
Sbjct: 569 MAAYTDEGGKDGPE 582
Score = 63.1 bits (153), Expect = 3e-10
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 14/129 (10%)
Query: 556 PDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVK 615
++Y+L + + D W+ ++ + ++T NL + Y V
Sbjct: 425 ESVKKYILEWCVLSDKAPCITD---------WQ-QEDGTVHRTYLRGNLAESKCYLITVT 474
Query: 616 IYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEP--KHPHGILEKYVIK 673
+ PS +V + L W + +G + Y I
Sbjct: 475 PVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTI- 533
Query: 674 AYYQDYDKD 682
+Y+ +
Sbjct: 534 -FYRTIIGN 541
Score = 58.5 bits (141), Expect = 7e-09
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 837 SRTEVDHLADTIPADSLNFEMINASA----LRIRWHPPSRPNGIIVAYNIEYKRESGGNS 892
D + P N +IN+ L++ W PS + II+ YNI+Y R ++
Sbjct: 187 DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQY-RTKDAST 245
Query: 893 ENMCRTRKDIDRDSGLYLYD-YPAGSYLFRLRVVSLGGEGPWTSW 936
+ S + D P Y+FR+R + G+G W+ W
Sbjct: 246 WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDW 290
Score = 49.2 bits (117), Expect = 6e-06
Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 17/178 (9%)
Query: 782 EENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEV 841
D +S+T+ L F VF I +++ K SEE ++ +
Sbjct: 250 PPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKG-------YWSDWSEEASGITYEDR 302
Query: 842 DHLADTIPADSLNFEMINASALRIRWH--PPSRPNGIIVAYNIEYKRESGGNSENMCRTR 899
A + +++ W PP NG I+ Y + R
Sbjct: 303 PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNAT 362
Query: 900 KDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYVIVVVT 957
K + YL L V +L G+ + T + +
Sbjct: 363 K--------LTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPK 412
Score = 44.6 bits (105), Expect = 2e-04
Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 8/117 (6%)
Query: 570 NGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISL 629
NG D++ + S + +N+ TV + Y + + N + +
Sbjct: 337 NGKILDYEVTLTRWKSHLQNYTVNATKLTVNL----TNDRYLATLTVRNLVGKSDAAVLT 392
Query: 630 QTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDT 686
+ + P + + + W P+ KY+++ + DK T
Sbjct: 393 IPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVK---KYILE-WCVLSDKAPCIT 445
Score = 42.3 bits (99), Expect = 8e-04
Identities = 11/105 (10%), Positives = 34/105 (32%), Gaps = 5/105 (4%)
Query: 853 LNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD 912
L+ + +R W R + + ++ + + ++ C+ ++D +
Sbjct: 109 LSCIVNEGKKMRCEWDGG-RETHLETNFTLKSEWATHKFAD--CKAKRDTPTSCTVDYST 165
Query: 913 YPAGSYLFRLRVVSLGGEGPW--TSWKPCVIESAETPMSVYVIVV 955
+ + + G+ ++ P P ++ VI
Sbjct: 166 VYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINS 210
Score = 39.2 bits (91), Expect = 0.006
Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 6/102 (5%)
Query: 858 INASALRIRWHPPS-RPNGIIVAYNIEY-KRESGGNSENMCRTRKDIDRDSGLYLYDYPA 915
+ L + W P I+ + + K + + T L +
Sbjct: 411 PKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLA----ES 466
Query: 916 GSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYVIVVVT 957
YL + V G G S K + ++ + V
Sbjct: 467 KCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVG 508
Score = 38.4 bits (89), Expect = 0.012
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 11/124 (8%)
Query: 588 KFKDINSKNKTVEVMNLEPAT-EYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVV 646
++ IN +V ++ + + + I++ + LP P P +
Sbjct: 55 QYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLP--PEKPKNLSCI 112
Query: 647 RVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLRDLSDSTYAASH 706
+ W + + + + + + D + RD S
Sbjct: 113 VNEGKKMRCEW-DGGRETHLETNFTL--KSEWATHKFADCKAK-----RDTPTSCTVDYS 164
Query: 707 LMRF 710
+ F
Sbjct: 165 TVYF 168
Score = 33.1 bits (75), Expect = 0.46
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
+++S + + +L T Y + Y
Sbjct: 540 GNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTD 574
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 60.1 bits (146), Expect = 5e-11
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD--S 906
P L+F I ++L++ W P NGI+ Y I ++ + N+ +
Sbjct: 20 PVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVT 79
Query: 907 GLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
GL +Y + ++ G+G ++
Sbjct: 80 GL----TALTTYTIEVAAMTSKGQGQVSA 104
Score = 56.7 bits (137), Expect = 7e-10
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 624 RSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDY 683
S L T P + +S+ + W EP +GIL Y I +++Y++
Sbjct: 5 SSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRI--SWEEYNRTN 62
Query: 684 LDTRNY 689
+Y
Sbjct: 63 TRVTHY 68
Score = 32.0 bits (73), Expect = 0.29
Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 21/113 (18%)
Query: 531 SNLALVVLNKTDVSIRFQ--LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWK 588
+L+ + T + + +Q +N + Y + + + + +
Sbjct: 22 GHLSFSEILDTSLKVSWQEPGEKNGIL---TGYRISWEEYNRT-------------NTRV 65
Query: 589 FKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKPSIP 640
+ + V L T Y V S+ S ++ + +P PS P
Sbjct: 66 THYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVP--PSGP 116
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 64.9 bits (157), Expect = 6e-11
Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 14/154 (9%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKV--PDNQRYVLFYMKADNGMYTDFDTVGSCSASGWK 588
L + ++ + + P Y L + +
Sbjct: 286 QQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKY------------VRLKR 333
Query: 589 FKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRV 648
+ +++ + L Y F + +N +S I + T P P F+V +
Sbjct: 334 AEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDI 393
Query: 649 NSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
NS++V L W P + I I+ + ++
Sbjct: 394 NSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQE 427
Score = 53.7 bits (128), Expect = 2e-07
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 5/106 (4%)
Query: 837 SRTEVDHLADTIPA--DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSEN 894
S V+ P S + IN++A+++ WH P I IE K+ + +
Sbjct: 370 STILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQR 429
Query: 895 MCRTRKDIDRDSGLYLYD-YPAGSYLFRLRVVS--LGGEGPWTSWK 937
+ + + L P Y FR+R + W++ K
Sbjct: 430 NVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKK 475
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 61.8 bits (150), Expect = 6e-11
Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 23/150 (15%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFK 590
++L+ V + + + +R+ + + Y + + A G+ D V S
Sbjct: 27 TDLSFVDITDSSIGLRWTPLNSSTI---IGYRITVVAAGEGIPIFEDFVDS--------- 74
Query: 591 DINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVNS 650
V LEP +Y V + S T T P +
Sbjct: 75 ----SVGYYTVTGLEPGIDYDISVYTVKNGG--EST-PTTLTQQTAVPPPTDLRFTNIGP 127
Query: 651 SSVTLRWGEPKHPHGILEKYVIKAYYQDYD 680
++ + W P P L +++ Y
Sbjct: 128 DTMRVTWAPP--PSIDLTNFLV--RYSPVK 153
Score = 50.2 bits (120), Expect = 6e-07
Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 20/128 (15%)
Query: 824 PEEGRCSEETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIE 883
S S EV L+F I S++ +RW P + I+ Y I
Sbjct: 6 HHHHHSSGLVPRGSHMEVP------QPTDLSFVDITDSSIGLRWTPL--NSSTIIGYRIT 57
Query: 884 YKRESGGNSENMCRTRKDIDRD--SGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVI 941
G + +GL P Y + V GGE T+
Sbjct: 58 VVAAGEGIPIFEDFVDSSVGYYTVTGL----EPGIDYDISVYTVKNGGESTPTTL----- 108
Query: 942 ESAETPMS 949
+ +T +
Sbjct: 109 -TQQTAVP 115
Score = 49.1 bits (117), Expect = 1e-06
Identities = 25/165 (15%), Positives = 44/165 (26%), Gaps = 27/165 (16%)
Query: 775 SSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETL 834
+ E+ V YT+ GL ++ + + S T
Sbjct: 61 AGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGE-------------STPTT 107
Query: 835 VMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSEN 894
+ +T V P L F I +R+ W PP P+ + + + Y
Sbjct: 108 LTQQTAVP------PPTDLRFTNIGPDTMRVTWAPP--PSIDLTNFLVRYSPVKNEEDV- 158
Query: 895 MCRTRKDIDRDSGLYLYD--YPAGSYLFRLRVVSLGGEGPWTSWK 937
I + P Y+ + V E +
Sbjct: 159 ---AELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR 200
Score = 38.3 bits (89), Expect = 0.006
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Query: 625 SNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYD 680
S + + + P P V + SS+ LRW + Y I
Sbjct: 12 SGLVPRGSHMEVPQ-PTDLSFVDITDSSIGLRWTPL--NSSTIIGYRI--TVVAAG 62
Score = 33.6 bits (77), Expect = 0.16
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 16/90 (17%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFK 590
++L + + + + + + +++ Y N
Sbjct: 118 TDLRFTNIGPDTMRVTWAPPPSIDL---TNFLVRYSPVKNE-------------EDVAEL 161
Query: 591 DINSKNKTVEVMNLEPATEYAFFVKIYNSQ 620
I+ + V + NL P TEY V Q
Sbjct: 162 SISPSDNAVVLTNLLPGTEYVVSVSSVYEQ 191
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 63.7 bits (155), Expect = 9e-11
Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 24/152 (15%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFK 590
++L + + + + + + +++ Y N
Sbjct: 191 TDLRFTNIGPDTMRVTWAPPPSIDL---TNFLVRYSPVKNE-------------EDVAEL 234
Query: 591 DINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVNS 650
I+ + V + NL P TEY V Q S L+ T P + + +
Sbjct: 235 SISPSDNAVVLTNLLPGTEYVVSVSSVYEQ--HEST-PLRGRQKTGLDSPTGIDFSDITA 291
Query: 651 SSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
+S T+ W P + Y I +
Sbjct: 292 NSFTVHW---IAPRATITGYRI--RHHPEHFS 318
Score = 60.6 bits (147), Expect = 9e-10
Identities = 22/127 (17%), Positives = 34/127 (26%), Gaps = 19/127 (14%)
Query: 556 PDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVK 615
PD Y + + + V +++ + NL P EY V
Sbjct: 30 PDITGYRITTTPTNGQQGNSLEEV------------VHADQSSCTFDNLSPGLEYNVSVY 77
Query: 616 IYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAY 675
S T +P P V + SS+ LRW + Y I
Sbjct: 78 TVKD--DKESVPISDTIIPEVPQ-LTDLSFVDITDSSIGLRWTPL--NSSTIIGYRI--T 130
Query: 676 YQDYDKD 682
+
Sbjct: 131 VVAAGEG 137
Score = 58.7 bits (142), Expect = 4e-09
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 23/150 (15%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFK 590
++L+ V + + + +R+ + + Y + + A G+ D V
Sbjct: 100 TDLSFVDITDSSIGLRWTPLNSSTI---IGYRITVVAAGEGIPIFEDFV----------- 145
Query: 591 DINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVNS 650
+S V LEP +Y V + + T T P +
Sbjct: 146 --DSSVGYYTVTGLEPGIDYDISVITLIN---GGESAPTTLTQQTAVPPPTDLRFTNIGP 200
Query: 651 SSVTLRWGEPKHPHGILEKYVIKAYYQDYD 680
++ + W P P L +++ Y
Sbjct: 201 DTMRVTWAPP--PSIDLTNFLV--RYSPVK 226
Score = 57.5 bits (139), Expect = 1e-08
Identities = 28/178 (15%), Positives = 49/178 (27%), Gaps = 29/178 (16%)
Query: 780 DREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRT 839
+ E V ++S T L ++ + + + S
Sbjct: 48 NSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVK-------------DDKESVPISDTIIP 94
Query: 840 EVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTR 899
EV L+F I S++ +RW P + I+ Y I G
Sbjct: 95 EVP------QLTDLSFVDITDSSIGLRWTPL--NSSTIIGYRITVVAAGEGIPIFEDFVD 146
Query: 900 KDIDR--DSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYVIVV 955
+ +GL P Y + + GGE T+ P + +
Sbjct: 147 SSVGYYTVTGLE----PGIDYDISVITLINGGESAPTTLTQQTAVPP--PTDLRFTNI 198
Score = 50.2 bits (120), Expect = 2e-06
Identities = 27/183 (14%), Positives = 47/183 (25%), Gaps = 29/183 (15%)
Query: 775 SSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETL 834
+ E+ V YT+ GL ++ G S T
Sbjct: 134 AGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLI-------------NGGESAPTT 180
Query: 835 VMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSEN 894
+ +T V P L F I +R+ W PP P+ + + + Y
Sbjct: 181 LTQQTAVP------PPTDLRFTNIGPDTMRVTWAPP--PSIDLTNFLVRYSPVKNEED-- 230
Query: 895 MCRTRKDIDRDSGLYLYD--YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYV 952
I + P Y+ + V E + + P +
Sbjct: 231 --VAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDS--PTGIDF 286
Query: 953 IVV 955
+
Sbjct: 287 SDI 289
Score = 48.3 bits (115), Expect = 7e-06
Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 28/159 (17%)
Query: 779 PDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSR 838
D E + + + + L V ++S+ ++ + S +
Sbjct: 229 EDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHE-------------STPLRGRQK 275
Query: 839 TEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRT 898
T +D ++F I A++ + W P I Y I + E R
Sbjct: 276 TGLD------SPTGIDFSDITANSFTVHWIAP---RATITGYRIRHHPEHFSGRPREDRV 326
Query: 899 RKDID--RDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
+ + L P Y+ + ++ E P
Sbjct: 327 PHSRNSITLTNL----TPGTEYVVSIVALNGREESPLLI 361
Score = 40.2 bits (94), Expect = 0.003
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 856 EMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD--Y 913
+ L + W + P+ I Y I +G ++ + + D +D
Sbjct: 13 ANPDTGVLTVSWERSTTPD--ITGYRITTTPTNGQQGNSL---EEVVHADQSSCTFDNLS 67
Query: 914 PAGSYLFRLRVVSLGGEGPWTS 935
P Y + V E S
Sbjct: 68 PGLEYNVSVYTVKDDKESVPIS 89
Score = 34.4 bits (79), Expect = 0.19
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 587 WKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKP 637
+ + ++ + NL P TEY + N + I Q+T+
Sbjct: 321 PREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSAHH 371
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 58.9 bits (143), Expect = 1e-10
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGL 908
PA +L + +++ + W P NG I Y + Y E G + E +GL
Sbjct: 20 PAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYY-MEKGTDKEQDVDVSSHSYTINGL 78
Query: 909 YLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETP 947
Y FR+ + G G T S P
Sbjct: 79 ----KKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSGP 113
Score = 51.6 bits (124), Expect = 4e-08
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 625 SNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDY- 683
S P + +S+T+ W P +G ++ Y + YY + D
Sbjct: 6 SGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKL--YYMEKGTDKE 63
Query: 684 ----LDTRNYCVDKLR 695
+ + +Y ++ L+
Sbjct: 64 QDVDVSSHSYTINGLK 79
Score = 34.2 bits (79), Expect = 0.041
Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 22/106 (20%)
Query: 531 SNLALVVLNKTDVSIRFQ--LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWK 588
NL + T +++ ++ ++ N ++ Q Y L+YM+ K
Sbjct: 22 PNLRAYAASPTSITVTWETPVSGNGEI---QNYKLYYMEKGT----------------DK 62
Query: 589 FKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTL 633
+D++ + + + L+ TEY+F V YN V + TL
Sbjct: 63 EQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTL 108
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 58.0 bits (141), Expect = 2e-10
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 13/103 (12%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS-- 906
P ++L + +++ I W PP+ NG + Y + S G +N+ ++D S
Sbjct: 10 PVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNI-----EVDGLSYK 64
Query: 907 --GLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETP 947
GL Y R + G G T V S P
Sbjct: 65 LEGL----KKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSGP 103
Score = 49.9 bits (120), Expect = 1e-07
Identities = 10/70 (14%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDY-----LD 685
++ + P + V + +S+ + W P + +G ++ Y + + + +D
Sbjct: 2 SSGSSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRL--FCTEVSTGKEQNIEVD 59
Query: 686 TRNYCVDKLR 695
+Y ++ L+
Sbjct: 60 GLSYKLEGLK 69
Score = 36.8 bits (86), Expect = 0.004
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 22/107 (20%)
Query: 531 SNLALVVLNKTDVSIRFQ--LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWK 588
NL V + T + I ++ N V Q Y LF + K
Sbjct: 12 ENLQAVSTSPTSILITWEPPAYANGPV---QGYRLFCTEVST----------------GK 52
Query: 589 FKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLP 634
++I + ++ L+ TEY+ YN V ++ TL
Sbjct: 53 EQNIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLS 99
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 62.5 bits (152), Expect = 2e-10
Identities = 22/155 (14%), Positives = 42/155 (27%), Gaps = 31/155 (20%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDN---QRYVLFYMKADNGMYTDFDTVGSCSASGW 587
+ + + ++ + Y + + D V
Sbjct: 190 TGIDFSDITANSFTVHWI-------APRATITGYRIRHHPEHFSGRPREDRV-------- 234
Query: 588 KFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVR 647
++ + NL P TEY + N + L T +P EVV
Sbjct: 235 -----PHSRNSITLTNLTPGTEYVVSIVALNG---REESPLLIGQQSTVSDVPRDLEVVA 286
Query: 648 VNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
+S+ + W P + Y I Y + +
Sbjct: 287 ATPTSLLISW---DAPAVTVRYYRI--TYGETGGN 316
Score = 59.8 bits (145), Expect = 2e-09
Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 24/152 (15%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFK 590
++L + + + + + + +++ Y N
Sbjct: 99 TDLRFTNIGPDTMRVTWAPPPSIDL---TNFLVRYSPVKNE-------------EDVAEL 142
Query: 591 DINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVNS 650
I+ + V + NL P TEY V Q S L+ T P + + +
Sbjct: 143 SISPSDNAVVLTNLLPGTEYVVSVSSVYEQ--HEST-PLRGRQKTGLDSPTGIDFSDITA 199
Query: 651 SSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
+S T+ W P + Y I +
Sbjct: 200 NSFTVHW---IAPRATITGYRI--RHHPEHFS 226
Score = 56.4 bits (136), Expect = 2e-08
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 19/127 (14%)
Query: 556 PDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVK 615
PD Y + + + V +++ + NL P EY V
Sbjct: 29 PDITGYRITTTPTNGQQGNSLEEV------------VHADQSSCTFDNLSPGLEYNVSVY 76
Query: 616 IYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAY 675
S T +P P P + ++ + W P P L +++
Sbjct: 77 TVKD--DKESVPISDTIIPAVPP-PTDLRFTNIGPDTMRVTWAPP--PSIDLTNFLV--R 129
Query: 676 YQDYDKD 682
Y +
Sbjct: 130 YSPVKNE 136
Score = 54.8 bits (132), Expect = 7e-08
Identities = 26/179 (14%), Positives = 51/179 (28%), Gaps = 30/179 (16%)
Query: 779 PDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSR 838
D E + + + + L V ++S+ E S +
Sbjct: 137 EDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVY-------------EQHESTPLRGRQK 183
Query: 839 TEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRT 898
T +D ++F I A++ + W P I Y I + E R
Sbjct: 184 TGLD------SPTGIDFSDITANSFTVHWIAP---RATITGYRIRHHPEHFSGRPREDRV 234
Query: 899 RKDID--RDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYVIVV 955
+ + L P Y+ + ++ E P + + P + V+
Sbjct: 235 PHSRNSITLTNL----TPGTEYVVSIVALNGREESPLLIGQQSTVSDV--PRDLEVVAA 287
Score = 51.4 bits (123), Expect = 9e-07
Identities = 23/183 (12%), Positives = 46/183 (25%), Gaps = 29/183 (15%)
Query: 775 SSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETL 834
+ + + E V ++S T L ++ + + + S
Sbjct: 42 NGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVK-------------DDKESVPIS 88
Query: 835 VMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSEN 894
V P L F I +R+ W PP P+ + + + Y
Sbjct: 89 DTIIPAVP------PPTDLRFTNIGPDTMRVTWAPP--PSIDLTNFLVRYSPVKNEEDV- 139
Query: 895 MCRTRKDIDRDSGLYLYD--YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYV 952
I + P Y+ + V E + + P +
Sbjct: 140 ---AELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDS--PTGIDF 194
Query: 953 IVV 955
+
Sbjct: 195 SDI 197
Score = 47.5 bits (113), Expect = 1e-05
Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 9/89 (10%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD--S 906
L ++L I W P + Y I Y G + S
Sbjct: 278 VPRDLEVVAATPTSLLISWDAP---AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATIS 334
Query: 907 GLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
GL P Y + V+ G+ P +S
Sbjct: 335 GL----KPGVDYTITVYAVTGRGDSPASS 359
Score = 44.1 bits (104), Expect = 1e-04
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 9/102 (8%)
Query: 856 EMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD--Y 913
+ L + W + P+ I Y I +G + + D +D
Sbjct: 12 ANPDTGVLTVSWERSTTPD--ITGYRITTTPTNGQQGN---SLEEVVHADQSSCTFDNLS 66
Query: 914 PAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYVIVV 955
P Y + V E S +I + P + +
Sbjct: 67 PGLEYNVSVYTVKDDKESVPISDT--IIPAVPPPTDLRFTNI 106
Score = 29.4 bits (66), Expect = 5.5
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 12/74 (16%)
Query: 637 PSIPYQFEVV-RVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDK-- 693
S P + ++ +T+ W + Y I + ++ V
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERS--TTPDITGYRI--TTTPTNGQQGNSLEEVVHADQ 57
Query: 694 ----LRDLS-DSTY 702
+LS Y
Sbjct: 58 SSCTFDNLSPGLEY 71
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 58.2 bits (141), Expect = 3e-10
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 856 EMINASALRIRWHPP--SRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS----GLY 909
+ ++ +R+ W PP NG+I Y++ Y+ G + + S GL
Sbjct: 28 VSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGL- 86
Query: 910 LYDYPAGSYLFRLRVVSLGGEGPWTSWKPC 939
Y +R + G GP +S
Sbjct: 87 ---EKWTEYRVWVRAHTDVGPGPESSPVLV 113
Score = 40.4 bits (95), Expect = 5e-04
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 11/88 (12%)
Query: 625 SNISLQTTLPTKPSI-PYQFEVVRVNSSSVTLRWGEP--KHPHGILEKYVIKAYYQDYDK 681
S T + PS P + V + S++V + W P +G++ +Y + Y +
Sbjct: 6 SGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVA-YEAVDGE 64
Query: 682 DYLDTRNYCVD------KLRDLS-DSTY 702
D + L L + Y
Sbjct: 65 DRGRHVVDGISREHSSWDLVGLEKWTEY 92
Score = 37.7 bits (88), Expect = 0.004
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 25/129 (19%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQR------YVLFYMKADNGMYTDFDTVGSCSA 584
+ V + T V + + P + R Y + Y D
Sbjct: 23 QKVMCVSMGSTTVRVSWV-----PPPADSRNGVITQYSVAYEAVDGE-----------DR 66
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKPSIPYQF 643
I+ ++ + +++ LE TEY +V+ + S+ L T PS P +
Sbjct: 67 GRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPR- 125
Query: 644 EVVRVNSSS 652
V SS
Sbjct: 126 -KVESGPSS 133
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 57.4 bits (139), Expect = 4e-10
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 856 EMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD---SGLYLYD 912
M++++ + ++W P PNG I Y + Y + + N + + L
Sbjct: 28 RMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNL---- 83
Query: 913 YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
P +Y ++ + G+GP +S + ++ P S
Sbjct: 84 VPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGPSS 120
Score = 49.3 bits (118), Expect = 3e-07
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 625 SNISLQTTLPTKPSI-PYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDY 683
S L T PS P + ++S+++ ++W EP+ P+G ++ Y + Y D +
Sbjct: 6 SGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVY-YTMDPTQHV 64
Query: 684 LDTRNYCVD-----KLRDL-SDSTY 702
+ + V + +L TY
Sbjct: 65 NNWMKHNVADSQITTIGNLVPQKTY 89
Score = 30.1 bits (68), Expect = 1.3
Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 531 SNLALVVLNKTDVSIRFQ--LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWK 588
++ +L+ T + ++++ N ++ Q Y ++Y + W
Sbjct: 23 RDVQARMLSSTTILVQWKEPEEPNGQI---QGYRVYYTMDPTQ-----------HVNNWM 68
Query: 589 FKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
++ + NL P Y+ V + S
Sbjct: 69 KHNVADSQ-ITTIGNLVPQKTYSVKVLAFTS 98
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 61.0 bits (148), Expect = 4e-10
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 8/100 (8%)
Query: 583 SASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQ 642
G + V L P + Y + S+ + T T+ P
Sbjct: 54 GEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRG--TNESD-ASSTQFTTEIDAPKN 110
Query: 643 FEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
V ++S+ L W + ++Y + Y +
Sbjct: 111 LRVGSRTATSLDLEW---DNSEAEAQEYKV--VYSTLAGE 145
Score = 57.5 bits (139), Expect = 5e-09
Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 27/150 (18%)
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYN 618
Q Y + Y Y + + +L P TEY +
Sbjct: 133 QEYKVVYSTLAGEQYHEVLV-----------PKGIGPTTKTTLTDLVPGTEYGVGISAVM 181
Query: 619 SQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQD 678
+ + +I T+ P V + +S++L W G ++ Y I +
Sbjct: 182 NSK---QSIPATMNARTELDSPRDLMVTASSETSISLIW---TKASGPIDHYRI--TFTP 233
Query: 679 YDKDYL------DTRNYCVDKLRDLSDSTY 702
D +Y + L + Y
Sbjct: 234 SSGISSEVTVPRDRTSYTLTDLE--PGAEY 261
Score = 47.1 bits (112), Expect = 1e-05
Identities = 25/163 (15%), Positives = 49/163 (30%), Gaps = 26/163 (15%)
Query: 775 SSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETL 834
+ + + P T T+ L ISA ++ S
Sbjct: 144 GEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQ-------------SIPAT 190
Query: 835 VMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSEN 894
+ +RTE+D L + +++ + W +G I Y I + SG +SE
Sbjct: 191 MNARTELD------SPRDLMVTASSETSISLIWTKA---SGPIDHYRITFTPSSGISSEV 241
Query: 895 MCRTRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWK 937
+ + L P Y+ + + ++
Sbjct: 242 TVPRDRTSYTLTDL----EPGAEYIISITAERGRQQSLESTVD 280
Score = 46.3 bits (110), Expect = 2e-05
Identities = 22/166 (13%), Positives = 41/166 (24%), Gaps = 30/166 (18%)
Query: 774 ISSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEET 833
+ + + P + Y++ L +ISA E S
Sbjct: 51 LVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAV----------RGTNESDASSTQ 100
Query: 834 LVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSE 893
TE+D +L A++L + W Y + Y +G
Sbjct: 101 F---TTEID------APKNLRVGSRTATSLDLEWDNS---EAEAQEYKVVYSTLAGEQYH 148
Query: 894 NMCRTRKDIDRDS----GLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
+ + L P Y + V + +
Sbjct: 149 EVLVPKGIGPTTKTTLTDL----VPGTEYGVGISAVMNSKQSIPAT 190
Score = 39.8 bits (93), Expect = 0.002
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 9/86 (10%)
Query: 852 SLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR--DSGLY 909
+ ++ + + W PP + ++Y G + R + + + L
Sbjct: 20 QILVRDVSDTVAFVEWTPPR---AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQAL- 75
Query: 910 LYDYPAGSYLFRLRVVSLGGEGPWTS 935
P Y + V E +S
Sbjct: 76 ---RPGSRYEVSISAVRGTNESDASS 98
Score = 36.3 bits (84), Expect = 0.038
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 15/81 (18%)
Query: 630 QTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYL----- 684
P Q V V+ + + W P+ ++ ++ Y +
Sbjct: 8 GGGGIPVIDGPTQILVRDVSDTVAFVEWTPPRAK---VDFILL--KYGLVGGEGGKTTFR 62
Query: 685 ---DTRNYCVDKLRDLSDSTY 702
Y V LR S Y
Sbjct: 63 LQPPLSQYSVQALR--PGSRY 81
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 57.0 bits (138), Expect = 5e-10
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD--- 905
+ ++++ +R+ W PP+ G I + + + RE G N E T +
Sbjct: 20 APRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSRE-GDNRERALNTTQPGSLQLTV 78
Query: 906 SGLYLYDYPAGSYLFRLRVVSLGGEGPWT 934
L P Y FR+ + G G +
Sbjct: 79 GNL----KPEAMYTFRVVAYNEWGPGESS 103
Score = 50.5 bits (121), Expect = 9e-08
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQD--------YDKD 682
+ PS P V V+S V L W P G ++ + + ++ +
Sbjct: 12 PSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTV--FFSREGDNRERALNTT 69
Query: 683 YLDTRNYCVDKLRDLSDSTY 702
+ V L+ ++ Y
Sbjct: 70 QPGSLQLTVGNLK--PEAMY 87
Score = 34.7 bits (80), Expect = 0.031
Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 14/80 (17%)
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYN 618
Q + +F+ + + + V NL+P Y F V YN
Sbjct: 49 QTFTVFFSREG-------------DNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYN 95
Query: 619 SQRI-VRSNISLQTTLPTKP 637
S T P
Sbjct: 96 EWGPGESSQPIKVATQPESG 115
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 56.3 bits (136), Expect = 7e-10
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 852 SLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD--SGLY 909
+ + S+L + W P P+G ++ Y ++Y + ++ + +R GL
Sbjct: 13 DIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGL- 71
Query: 910 LYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
SYL ++R S G GP+ + P S
Sbjct: 72 ---KRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSGPSS 108
Score = 54.0 bits (130), Expect = 4e-09
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYC 690
++ + P V R + SS++L W P+ P G + Y +K Y++ + R
Sbjct: 2 SSGSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVK-YHEKGAEGPSSVRFLK 60
Query: 691 VDK----LRDLSDST 701
+ LR L
Sbjct: 61 TSENRAELRGLKRGA 75
Score = 33.6 bits (77), Expect = 0.068
Identities = 10/111 (9%), Positives = 28/111 (25%), Gaps = 19/111 (17%)
Query: 531 SNLALVVLNKTDVSIRFQ--LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWK 588
S++ + + + +S+ + + V Y + Y + + +
Sbjct: 12 SDIRVTRSSPSSLSLAWAVPRAPSGAV---LDYEVKYHEKGAEGPSSVRFL--------- 59
Query: 589 FKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKPS 638
+ E+ L+ Y V+ + T
Sbjct: 60 ----KTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSGP 106
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 59.8 bits (145), Expect = 9e-10
Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 26/144 (18%)
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYN 618
Y + + K ++ + +V V L AT+Y V
Sbjct: 49 TGYRVRVTPKEKT-------------GPMKEINLAPDSSSVVVSGLMVATKYEVSVYALK 95
Query: 619 SQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQD 678
R + TTL S P + V +++T+ W + + + +
Sbjct: 96 DTLTSRPAQGVVTTL-ENVSPPRRARVTDATETTITISW---RTKTETITGFQV--DAVP 149
Query: 679 YDKDYL-------DTRNYCVDKLR 695
+ D R+Y + L+
Sbjct: 150 ANGQTPIQRTIKPDVRSYTITGLQ 173
Score = 56.0 bits (135), Expect = 2e-08
Identities = 19/152 (12%), Positives = 47/152 (30%), Gaps = 30/152 (19%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDN--QRYVLFYMKADNGMYTDFDTVGSCSASGWK 588
+ +T ++I + + + + + A+
Sbjct: 117 RRARVTDATETTITISW------RTKTETITGFQVDAVPANGQ--------------TPI 156
Query: 589 FKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRV 648
+ I ++ + L+P T+Y ++ N RS+ + T P +
Sbjct: 157 QRTIKPDVRSYTITGLQPGTDYKIYLYTLNDN--ARSS-PVVIDASTAIDAPSNLRFLAT 213
Query: 649 NSSSVTLRWGEPKHPHGILEKYVIKAYYQDYD 680
+S+ + W + P + Y+I Y+
Sbjct: 214 TPNSLLVSW---QPPRARITGYII--KYEKPG 240
Score = 52.9 bits (127), Expect = 2e-07
Identities = 19/170 (11%), Positives = 43/170 (25%), Gaps = 35/170 (20%)
Query: 775 SSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETL 834
+ +E ++ +S + GL ++ A + R ++ +
Sbjct: 58 KEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTL----------TSRPAQGVV 107
Query: 835 VMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSEN 894
L + P + + I W I + ++ +G
Sbjct: 108 T-------TLENVSPPRRARVTDATETTITISWRTK---TETITGFQVDAVPANGQTP-- 155
Query: 895 MCRTRKDIDRD------SGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKP 938
++ I D +GL P Y L ++
Sbjct: 156 ---IQRTIKPDVRSYTITGL----QPGTDYKIYLYTLNDNARSSPVVIDA 198
Score = 51.7 bits (124), Expect = 4e-07
Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 28/158 (17%)
Query: 782 EENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEV 841
+ + SYT+ GL + + R S ++ + T +
Sbjct: 156 IQRTIKPDVRSYTITGLQPGTDYKIYLYTLN------------DNAR-SSPVVIDASTAI 202
Query: 842 DHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKD 901
D +L F ++L + W PP I Y I+Y++ E + R R
Sbjct: 203 D------APSNLRFLATTPNSLLVSWQPP---RARITGYIIKYEKPGSPPREVVPRPRPG 253
Query: 902 IDR--DSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWK 937
+ +GL P Y + + + +
Sbjct: 254 VTEATITGL----EPGTEYTIYVIALKNNQKSEPLIGR 287
Score = 44.4 bits (105), Expect = 1e-04
Identities = 17/113 (15%), Positives = 30/113 (26%), Gaps = 17/113 (15%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS-- 906
L F + ++L +W PP N + Y + + ++ DS
Sbjct: 23 APTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVTPKEKTGP----MKEINLAPDSSS 75
Query: 907 ----GLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYVIVV 955
GL A Y + + +E+ P V
Sbjct: 76 VVVSGL----MVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDA 124
Score = 38.2 bits (89), Expect = 0.008
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 15/80 (18%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDY------- 683
P + +V +S++ +W P+ L Y + +K
Sbjct: 15 LFQGPAIPAPTDLKFTQVTPTSLSAQW---TPPNVQLTGYRV--RVTPKEKTGPMKEINL 69
Query: 684 -LDTRNYCVDKLRDLSDSTY 702
D+ + V L + Y
Sbjct: 70 APDSSSVVVSGLM--VATKY 87
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 56.2 bits (136), Expect = 1e-09
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 856 EMINASALRIRWHPPSRP--NGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD- 912
+ + + ++++ W P + NG+I Y I Y+ S G++ DS +Y D
Sbjct: 25 QPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDN 84
Query: 913 -YPAGSYLFRLRVVSLGGEGPWTSWKPC 939
Y ++ + G GP +S
Sbjct: 85 LKKFAQYGVVVQAFNRAGTGPSSSEINA 112
Score = 41.2 bits (97), Expect = 2e-04
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 625 SNISLQTTLPTKPSI-PYQFEVVRVNSSSVTLRWGEP--KHPHGILEKYVIKAYYQDYDK 681
S S +T P P + V S S+ + W P + +G++ Y I Y++
Sbjct: 3 SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQI--GYRENSP 60
Query: 682 DYLDTRNYCVDKLRDLSDSTYA 703
Y + +++ DS
Sbjct: 61 G--SNGQYSIVEMKATGDSEVY 80
Score = 33.9 bits (78), Expect = 0.065
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 21/115 (18%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQR------YVLFYMKADNGMYTDFDTVGSCSA 584
++ L + + + ++ + Y + Y + G + V
Sbjct: 20 MDVTLQPVTSQSIQVTWK-----APKKELQNGVIRGYQIGYRENSPGSNGQYSIV----- 69
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKPS 638
++ + NL+ +Y V+ +N S+ TTL + PS
Sbjct: 70 ----EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 57.8 bits (140), Expect = 1e-09
Identities = 21/147 (14%), Positives = 42/147 (28%), Gaps = 27/147 (18%)
Query: 535 LVVLNKTDVSIRFQLNENEKVPDN-QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDIN 593
L V + T+ ++ + + RY L Y+ +I
Sbjct: 13 LEVSDPTETTLSLRW---RRPVAKFDRYRLTYVSPS---------------GKKNEMEIP 54
Query: 594 SKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSV 653
+ + + L+ TEY + + +S T P + +S
Sbjct: 55 VDSTSFILRGLDAGTEYTISLVAEKGRH--KSK-PTTIKGSTVVGSPKGISFSDITENSA 111
Query: 654 TLRWGEPKHPHGILEKYVIKAYYQDYD 680
T+ W P ++ Y + Y
Sbjct: 112 TVSW---TPPRSRVDSYRV--SYVPIT 133
Score = 46.3 bits (110), Expect = 1e-05
Identities = 25/159 (15%), Positives = 46/159 (28%), Gaps = 27/159 (16%)
Query: 780 DREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRT 839
+ E ++ TS+ + GL ++ A + S+ T + T
Sbjct: 47 KKNEMEIPVDSTSFILRGLDAGTEYTISLVAEK-------------GRHKSKPTTIKGST 93
Query: 840 EVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTR 899
V ++F I ++ + W PP + +Y + Y +GG +
Sbjct: 94 VVG------SPKGISFSDITENSATVSWTPP---RSRVDSYRVSYVPITGGTPNVVTVDG 144
Query: 900 KDIDRD-SGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWK 937
L P Y + V E S
Sbjct: 145 SKTRTKLVKL----VPGVDYNVNIISVKGFEESEPISGI 179
Score = 40.1 bits (94), Expect = 0.001
Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 7/102 (6%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGL 908
L + L +RW P Y + Y SG +E GL
Sbjct: 9 NPKDLEVSDPTETTLSLRWRRPV---AKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGL 65
Query: 909 YLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSV 950
Y L + T+ K + + +S
Sbjct: 66 ----DAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISF 103
Score = 39.7 bits (93), Expect = 0.002
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 632 TLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYD 680
T P EV ++++LRW + P ++Y + Y
Sbjct: 2 NAGTDLDNPKDLEVSDPTETTLSLRW---RRPVAKFDRYRL--TYVSPS 45
Score = 28.9 bits (65), Expect = 5.7
Identities = 6/61 (9%), Positives = 16/61 (26%), Gaps = 3/61 (4%)
Query: 578 TVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKP 637
+ + ++ +++ L P +Y + S + L T
Sbjct: 128 SYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGF--EESE-PISGILKTAL 184
Query: 638 S 638
Sbjct: 185 D 185
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 58.1 bits (141), Expect = 1e-09
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 583 SASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQ-RIVRSNISLQTTLPTKPSIPY 641
+ + N + +V L+ Y F V N + + + +P P
Sbjct: 48 TRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPG 107
Query: 642 QFEVVRVNSSSVTLRWGEPKHPHG-ILEKYVIKAYYQDYDKD 682
+ ++ V +SV+L W +P+H G + Y++ Q D
Sbjct: 108 KITLMDVTRNSVSLSWEKPEHDGGSRILGYIV--EMQTKGSD 147
Score = 44.3 bits (105), Expect = 5e-05
Identities = 28/156 (17%), Positives = 51/156 (32%), Gaps = 24/156 (15%)
Query: 789 PETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPE-EGRCSEETLVMSRTEVDHLADT 847
+TS+ + L S F + A + G +E + +E
Sbjct: 60 HKTSWKVDQLQEGCSYYFRVLA-----------ENEYGIGLPAETAESVKASER-----P 103
Query: 848 IPADSLNFEMINASALRIRWHPPSRPNG-IIVAYNIEYKRESGGNSENMCRTRKDID-RD 905
+P + + +++ + W P G I+ Y +E + G + C T K +
Sbjct: 104 LPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEM-QTKGSDKWATCATVKVTEATI 162
Query: 906 SGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVI 941
+GL Y FR+ + G VI
Sbjct: 163 TGLI----QGEEYSFRVSAQNEKGISDPRQLSVPVI 194
Score = 41.9 bits (99), Expect = 3e-04
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGI-IVAYNIEYKRESGGNSENMCRTRKDID-RDS 906
P L + + +++ + W PP G I Y +E + + + +
Sbjct: 8 PPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVD 67
Query: 907 GLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
L SY FR+ + G G
Sbjct: 68 QL----QEGCSYYFRVLAENEYGIGLPAE 92
Score = 40.4 bits (95), Expect = 0.001
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 634 PTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGI-LEKYVIKAYYQDYDK-------DYLD 685
P P +V V +SVTL W P G ++ Y++ ++ +
Sbjct: 3 MDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIV--EKRESTRKAYSTVATNCH 60
Query: 686 TRNYCVDKLR 695
++ VD+L+
Sbjct: 61 KTSWKVDQLQ 70
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 55.5 bits (134), Expect = 1e-09
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 852 SLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR--DSGLY 909
++ + ++WHPP G ++ Y ++Y + N KD +GL
Sbjct: 12 TMMISTTAMNTALLQWHPPKELPGELLGYRLQY-CRADEARPNTIDFGKDDQHFTVTGL- 69
Query: 910 LYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
+ +Y+FRL + G G + E P S
Sbjct: 70 ---HKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDLSGPSS 106
Score = 45.9 bits (109), Expect = 4e-06
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYC 690
++ + P P + ++ L+W PK G L Y + Y D+ +T ++
Sbjct: 2 SSGSSGPGRP-TMMISTTAMNTALLQWHPPKELPGELLGYRL--QYCRADEARPNTIDF- 57
Query: 691 VDKLRDLSDSTYAASHL 707
D + + L
Sbjct: 58 -----GKDDQHFTVTGL 69
Score = 30.8 bits (70), Expect = 0.52
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 14/59 (23%)
Query: 561 YVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
Y L Y +AD D ++ V L T Y F + N
Sbjct: 40 YRLQYCRADEAR--------------PNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNR 84
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 55.5 bits (134), Expect = 1e-09
Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 5/91 (5%)
Query: 859 NASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAGSY 918
+ W PP +G+I Y +EY R + R + L Y
Sbjct: 22 AEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQ-RAASNFTEIKNL----LVNTLY 76
Query: 919 LFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
R+ V+ G G W+ K P S
Sbjct: 77 TVRVAAVTSRGIGNWSDSKSITTIKGSGPSS 107
Score = 47.8 bits (114), Expect = 7e-07
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 631 TTLPTKPSIPYQFEVV--RVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDY----L 684
++ + P P ++ R + W P H HG++ +Y+++ Y + K +
Sbjct: 2 SSGSSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVE-YSRSGSKMWASQRA 60
Query: 685 DTRNYCVDKLRDLSDSTY 702
+ + L ++ Y
Sbjct: 61 ASNFTEIKNLL--VNTLY 76
Score = 34.3 bits (79), Expect = 0.037
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 26/113 (23%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDN-----QRYVLFYMKADNGMYTDFDTVGSCSAS 585
NL L + + + I P + + Y++ Y ++ + M+
Sbjct: 12 RNLQLSLPREAEGVIVGHWAP----PIHTHGLIREYIVEYSRSGSKMWASQ--------- 58
Query: 586 GWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKP 637
+ + E+ NL T Y V S+ I S+ TT+
Sbjct: 59 -------RAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG 104
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 55.6 bits (134), Expect = 2e-09
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 856 EMINASALRIRWH--PPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDY 913
+ +N + + ++W P S N I + I Y+ N + + + DR +
Sbjct: 18 DAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQ 77
Query: 914 PAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
P SY +++ + GGE +++ C ++ P S
Sbjct: 78 PETSYDIKMQCFNEGGESEFSNVMICETKARSGPSS 113
Score = 41.7 bits (98), Expect = 1e-04
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 631 TTLPTKPSI-PYQFEVVRVNSSSVTLRW--GEPKHPHGILEKYVIKAYYQDYDKD 682
++ + P PY VN +++ L+W + + + + I YY+ D D
Sbjct: 2 SSGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYI--YYRPTDSD 54
Score = 38.6 bits (90), Expect = 0.001
Identities = 14/109 (12%), Positives = 35/109 (32%), Gaps = 13/109 (11%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDN-QRYVLFYMKADNGMYTDFDTVGSCSASGWKF 589
+N+T + +++ + ++Y D+ +D +K
Sbjct: 13 YITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSD-----------YKK 61
Query: 590 KDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKP 637
+ + +L+P T Y ++ +N SN+ + T
Sbjct: 62 DMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSG 110
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 56.7 bits (137), Expect = 4e-09
Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 10/131 (7%)
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYN 618
+ + Y + T + K+ K+ T V +L+P Y F +
Sbjct: 33 VIFKVQY-RMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVY 91
Query: 619 SQRI-VRSNISLQTTLPTK-----PSIPYQFEVVRVNSSSVTLRWGEPKHPHG-ILEKYV 671
S SN S + L +P E+ + ++V L W ++ Y
Sbjct: 92 SNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYY 151
Query: 672 IKAYYQDYDKD 682
YY+
Sbjct: 152 A--YYRPSSSA 160
Score = 50.6 bits (121), Expect = 5e-07
Identities = 30/174 (17%), Positives = 52/174 (29%), Gaps = 20/174 (11%)
Query: 773 NISSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEE 832
N + + N L + ++ L + F I A Y + + S
Sbjct: 52 NDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAV----------YSNNDNKESNT 101
Query: 833 TLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNG-IIVAYNIEYKRESGGN 891
+ L + L E + +A+ + W S + +I Y Y R S
Sbjct: 102 SAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYY-RPSSSA 160
Query: 892 SENMCRTRKDIDRDS----GLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVI 941
E T + S L A Y F+L+ S +++ K
Sbjct: 161 GEYFKATIEGAHARSFKIAPLE----TATMYEFKLQSFSAASASEFSALKQGRT 210
Score = 46.3 bits (110), Expect = 2e-05
Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 13/126 (10%)
Query: 847 TIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS 906
T P N ++ ++ +RW P IV + ++Y+ + +
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 907 GLYLYDY----------PAGSYLFRLRVVSLGGEGPW---TSWKPCVIESAETPMSVYVI 953
P +Y FR+ V + ++ +A PM V +
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPEL 121
Query: 954 VVVTGL 959
+ +
Sbjct: 122 LEIEEY 127
Score = 35.6 bits (82), Expect = 0.047
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 640 PYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVI 672
P V R++ SV LRW P++ + + +
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKV 37
Score = 30.5 bits (69), Expect = 2.0
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 14/90 (15%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFK 590
L + ++T V + + L + Y +Y + SA +
Sbjct: 120 ELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSS-------------SAGEYFKA 166
Query: 591 DI-NSKNKTVEVMNLEPATEYAFFVKIYNS 619
I + ++ ++ LE AT Y F ++ +++
Sbjct: 167 TIEGAHARSFKIAPLETATMYEFKLQSFSA 196
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 56.7 bits (137), Expect = 4e-09
Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 23/151 (15%)
Query: 561 YVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQ 620
Y + ++ S W S V ++ L+P T YA + N +
Sbjct: 42 YKAEWRAVGEEVWH----------SKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGK 91
Query: 621 RI-VRSNISLQTTLPTKP-SIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQD 678
+ S S T P + S P + + +S+ + + + Y++ Y+
Sbjct: 92 GLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLV--RYRA 149
Query: 679 YDKDYL-------DTRNYCVDKLRDLSDSTY 702
++ + + + L ++ Y
Sbjct: 150 LSSEWKPEIRLPSGSDHVMLKSLD--WNAEY 178
Score = 50.2 bits (120), Expect = 7e-07
Identities = 11/91 (12%), Positives = 22/91 (24%), Gaps = 11/91 (12%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS-- 906
+ +++++ I Y + Y+ S SE R D
Sbjct: 112 APKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALS---SEWKPEIRLPSGSDHVM 168
Query: 907 --GLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
L Y + + G+
Sbjct: 169 LKSL----DWNAEYEVYVVAENQQGKSKAAH 195
Score = 45.2 bits (107), Expect = 3e-05
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 858 INASALRIRWHPPSRPNGI-IVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD-YPA 915
+S ++++ P G+ I+ Y E++ + K+ + + + P
Sbjct: 19 PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPE 78
Query: 916 GSYLFRLRVVSLGGEGPWTS 935
+Y RL ++ G G ++
Sbjct: 79 TTYAVRLAALNGKGLGEISA 98
Score = 37.1 bits (86), Expect = 0.016
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 632 TLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGI-LEKYVI 672
PS P + V SS+ +++ EP+ G+ + KY
Sbjct: 4 AQADTPSSP-SIDQVEPYSSTAQVQFDEPEATGGVPILKYKA 44
Score = 29.0 bits (65), Expect = 6.2
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 587 WKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
+ S + V + +L+ EY +V N
Sbjct: 155 KPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQ 187
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 54.0 bits (130), Expect = 6e-09
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 13/106 (12%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGG-----NSENMCRTRKDID 903
L F + ++LR+ W P R + Y++EY+ +GG N N +T +
Sbjct: 20 TPTRLVFSALGPTSLRVSWQEP-RCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVV- 77
Query: 904 RDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
L P SY+FR+R S G G + P S
Sbjct: 78 --EDL----LPNHSYVFRVRAQSQEGWGREREGVITIESQVSGPSS 117
Score = 44.7 bits (106), Expect = 1e-05
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 625 SNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYD 680
S P P + + +S+ + W EP+ L+ Y + YQ +
Sbjct: 6 SGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRC-ERPLQGYSV--EYQLLN 58
Score = 29.7 bits (67), Expect = 1.6
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 15/61 (24%)
Query: 561 YVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKT-VEVMNLEPATEYAFFVKIYNS 619
Y + Y + G +I + +T V V +L P Y F V+ +
Sbjct: 50 YSVEYQLLNGG--------------ELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQ 95
Query: 620 Q 620
+
Sbjct: 96 E 96
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 57.9 bits (140), Expect = 8e-09
Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 29/154 (18%)
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYN 618
Y + + + WK + V + NLEP T Y V N
Sbjct: 228 HHYQVDVKEVAS--------------EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVN 273
Query: 619 ----SQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKA 674
S I + TLP + P + S L + + +Y++K
Sbjct: 274 GKGQGDY---SKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKY 330
Query: 675 YYQDYDKDYL------DTRNYCVDKLRDLSDSTY 702
+D + +L + + ++ L+ Y
Sbjct: 331 RSKDKEDQWLEKKVQGNKDHIILEHLQ--WTMGY 362
Score = 44.0 bits (104), Expect = 2e-04
Identities = 10/87 (11%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 852 SLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLY 911
S++ + + + ++ I+ Y ++Y+ + + E+ +K + L
Sbjct: 298 SIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSK---DKEDQWLEKKVQGNKDHIILE 354
Query: 912 DYPAGS-YLFRLRVVSLGGEGPWTSWK 937
Y ++ + G T ++
Sbjct: 355 HLQWTMGYEVQITAANRLGYSEPTVYE 381
Score = 40.2 bits (94), Expect = 0.003
Identities = 14/101 (13%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGI-IVAYNIEYKRESGGNSENMCRTRKDIDRDSG 907
+ ++ + ++ ++ P G+ I Y ++ +E + R+ +
Sbjct: 198 SPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDV-KEVASEIWKIVRSH---GVQTM 253
Query: 908 LYLYD-YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETP 947
+ L + P +Y R+ V+ G+G ++ + P
Sbjct: 254 VVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREP 294
Score = 34.8 bits (80), Expect = 0.13
Identities = 7/38 (18%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 636 KPSIPYQFEVVRVNSSSVTLRWGEPKHPHGI-LEKYVI 672
PS PY +++ ++ ++ + + +P G+ + Y +
Sbjct: 195 VPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQV 232
Score = 30.5 bits (69), Expect = 3.1
Identities = 8/62 (12%), Positives = 16/62 (25%), Gaps = 13/62 (20%)
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYN 618
Y++ Y D W K + + + +L+ Y + N
Sbjct: 324 LEYIVKYRSKD-------------KEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAAN 370
Query: 619 SQ 620
Sbjct: 371 RL 372
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 53.1 bits (128), Expect = 8e-09
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 856 EMINASALRIRWHPP--SRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS----GLY 909
E ++ + + ++W S N I + I Y+ N + R + + L
Sbjct: 14 EAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHL- 72
Query: 910 LYDYPAGSYLFRLRVVSLGGEGPWTSWKPC 939
P SY +++ + GGE +++ C
Sbjct: 73 ---QPETSYDIKMQCFNEGGESEFSNVMIC 99
Score = 36.2 bits (84), Expect = 0.006
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 634 PTKPSIPYQFEVVRVNSSSVTLRWGEP--KHPHGILEKYVIKAYYQDYDKD 682
P P+ V+ + + L+W + + ++ + I YY+ D D
Sbjct: 4 PITG--PHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYI--YYRPTDSD 50
Score = 32.7 bits (75), Expect = 0.10
Identities = 11/95 (11%), Positives = 33/95 (34%), Gaps = 22/95 (23%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQR------YVLFYMKADNGMYTDFDTVGSCSA 584
++ T + +++ +P + + ++Y D+ +D
Sbjct: 9 HIAYTEAVSDTQIMLKWT-----YIPSSNNNTPIQGFYIYYRPTDSDNDSD--------- 54
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
+K + + + +L+P T Y ++ +N
Sbjct: 55 --YKRDVVEGSKQWHMIGHLQPETSYDIKMQCFNE 87
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 53.2 bits (128), Expect = 1e-08
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 857 MINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS----GLYLYD 912
A+ + W PP NG I AY + Y + ++ DR + L
Sbjct: 21 EGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDL---- 76
Query: 913 YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETP 947
Y FR++ + G GP + P
Sbjct: 77 NLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSGP 111
Score = 45.8 bits (109), Expect = 4e-06
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 631 TTLPTKPSIP---YQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTR 687
++ + P+ +V + W P +G + Y++ Y D + D
Sbjct: 2 SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILF-YTLDKNIPIDDWI 60
Query: 688 NYCVD------KLRDL-SDSTY 702
+ ++ DL D+ Y
Sbjct: 61 METISGDRLTHQIMDLNLDTMY 82
Score = 34.7 bits (80), Expect = 0.030
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 19/112 (16%)
Query: 531 SNLALVVLNKTDVSIRFQ----LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASG 586
+L ++ ++ L N K+ Y+LFY N D
Sbjct: 13 KDLTVITREGKPRAVIVSWQPPLEANGKI---TAYILFYTLDKNIPIDD----------- 58
Query: 587 WKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKP 637
W + I+ T ++M+L T Y F ++ NS+ + S+ L TL
Sbjct: 59 WIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 53.1 bits (128), Expect = 2e-08
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 12/118 (10%)
Query: 826 EGRCSEETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPP--SRPNGIIVAYNIE 883
S + V + ++V + +L+ E+ N+ ++ I W PP + NG I Y I
Sbjct: 2 SSGSSGDVAVRTLSDVP----SAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIR 57
Query: 884 YKRESGGNSENMCRTRKDIDRD--SGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPC 939
Y++ S + GL Y FR+ +++ G GP T W
Sbjct: 58 YRKASRKSDVTETLVSGTQLSQLIEGL----DRGTEYNFRVAALTINGTGPATDWLSA 111
Score = 42.0 bits (99), Expect = 1e-04
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 625 SNISLQTTLPTKPSI-PYQFEVVRVNSSSVTLRWGEP--KHPHGILEKYVIKAYYQDYDK 681
S TL PS P + NS S+ + W P +G + Y I Y+ +
Sbjct: 6 SGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKI--RYRKASR 63
Query: 682 D 682
Sbjct: 64 K 64
Score = 38.9 bits (91), Expect = 0.002
Identities = 22/127 (17%), Positives = 36/127 (28%), Gaps = 25/127 (19%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQR------YVLFYMKADNGMYTDFDTVGSCSA 584
NL+L V N + I +Q + Y + Y KA
Sbjct: 23 QNLSLEVRNSKSIMIHWQ-----PPAPATQNGQITGYKIRYRKAS-------------RK 64
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKPSIPYQF 643
S ++ + + L+ TEY F V ++ T +
Sbjct: 65 SDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVP 124
Query: 644 EVVRVNS 650
EV +S
Sbjct: 125 EVSGPSS 131
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 52.3 bits (126), Expect = 2e-08
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 856 EMINASALRIRWHPP--SRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDY 913
+ S + W PP + NG I++Y + + R+ E T +GL
Sbjct: 18 TGLTTSTTELAWDPPVLAERNGRIISYTVVF-RDINSQQELQNITTDTRFTLTGL----K 72
Query: 914 PAGSYLFRLRVVSLGGEGPWTSW 936
P +Y ++R + G GP +
Sbjct: 73 PDTTYDIKVRAWTSKGSGPLSPS 95
Score = 41.5 bits (98), Expect = 8e-05
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 631 TTLPTKPS-IPYQFEVVRVNSSSVTLRWGEP--KHPHGILEKYVIKAYYQDYD 680
++ + PS P V + +S+ L W P +G + Y + ++D +
Sbjct: 2 SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTV--VFRDIN 52
Score = 33.4 bits (77), Expect = 0.065
Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 28/111 (25%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQR------YVLFYMKADNGMYTDFDTVGSCSA 584
NL + L + + + +R Y + + ++ T +
Sbjct: 13 QNLHVTGLTTSTTELAWD-----PPVLAERNGRIISYTVVFRDINSQQELQNITTDT--- 64
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLP 634
+ L+P T Y V+ + S+ S T+P
Sbjct: 65 -------------RFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTMP 102
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 52.7 bits (127), Expect = 2e-08
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 21/118 (17%)
Query: 826 EGRCSEETLVMSRTEVDHLADTIPA---DSLNFEMINASALRIRWHPPSRPNGIIVAYNI 882
S ++ S + P+ + +++++S + + W I+ +Y I
Sbjct: 2 SSGSSGVAVINSAQDA-------PSEAPTEVGVKVLSSSEISVHWEHV--LEKIVESYQI 52
Query: 883 EYKRESGGNSENMCRTRKDIDRDS----GLYLYDYPAGSYLFRLRVVSLGGEGPWTSW 936
Y + E R + S L P Y + + G GP +
Sbjct: 53 RY-WAAHDKEEAANRVQVTSQEYSARLENL----LPDTQYFIEVGACNSAGCGPPSDM 105
Score = 41.2 bits (97), Expect = 2e-04
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 625 SNISLQTTLPTKPSI-PYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDK 681
S +++ + PS P + V ++SS +++ W I+E Y I+ Y+ +DK
Sbjct: 6 SGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHV--LEKIVESYQIR-YWAAHDK 60
Score = 35.0 bits (81), Expect = 0.026
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFK 590
+ + + VL+ +++S+ ++ + V + Y + Y A +
Sbjct: 23 TEVGVKVLSSSEISVHWEHVLEKIV---ESYQIRYWAAHD------------KEEAANRV 67
Query: 591 DINSKNKTVEVMNLEPATEYAFFVKIYNS 619
+ S+ + + NL P T+Y V NS
Sbjct: 68 QVTSQEYSARLENLLPDTQYFIEVGACNS 96
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 51.9 bits (125), Expect = 3e-08
Identities = 22/116 (18%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 826 EGRCSEETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPP--SRPNGIIVAYNIE 883
G +++ V++ ++V + P +++ E++N+ ++++ W PP NG I Y I
Sbjct: 12 PGVSTDDITVVTLSDVP----SAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIR 67
Query: 884 YKRESGGNSENMCRTRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPC 939
+++ + +GL Y F++ +++ G GP ++W
Sbjct: 68 HRKTTRRGEMETLEPNNLWYLFTGL----EKGSQYSFQVSAMTVNGTGPPSNWYTA 119
Score = 40.4 bits (95), Expect = 3e-04
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 625 SNISLQTTLPTKPSI-PYQFEVVRVNSSSVTLRWGEP--KHPHGILEKYVIKAYYQDYDK 681
++ TL PS P + VNS S+ + W P +G + Y I ++ +
Sbjct: 16 TDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKI--RHRKTTR 73
Query: 682 DY 683
Sbjct: 74 RG 75
Score = 33.1 bits (76), Expect = 0.13
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 26/95 (27%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQR------YVLFYMKADNGMYTDFDTVGSCSA 584
N++L V+N + + + P + Y + + K
Sbjct: 33 QNVSLEVVNSRSIKVSWL-----PPPSGTQNGFITGYKIRHRKTT--------------- 72
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
+ + + N LE ++Y+F V
Sbjct: 73 RRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTV 107
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 52.0 bits (125), Expect = 3e-08
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 856 EMINASALRIRWHPPSR--PNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSG----LY 909
++N++ + W P G + Y I Y + + N K I G
Sbjct: 24 NVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGM 83
Query: 910 LYD-YPAGSYLFRLRVVSLGGEGPWTSWKPC 939
L P Y +RVV+ GEGP + +
Sbjct: 84 LPGLEPFSHYTLNVRVVNGKGEGPASPDRVF 114
Score = 43.9 bits (104), Expect = 2e-05
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 625 SNISLQTTLPTKPSI-PYQFEVVRVNSSSVTLRWGEP--KHPHGILEKYVIKAYYQDYDK 681
S+ S + P + P V VNS+ + W K G L+ Y I Y++
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIY-YWKTQSS 60
Query: 682 DYLDTRNYCVDKLRDLSDSTYA 703
+ R+ L T+
Sbjct: 61 SKRNRRHIEKKILTFQGSKTHG 82
Score = 34.7 bits (80), Expect = 0.036
Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 18/115 (15%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQR------YVLFYMKADNGMYTDFDTVGSCSA 584
N+ + V+N T + + VP Y ++Y K + + +
Sbjct: 19 GNVRVNVVNSTLAEVHWD-----PVPLKSIRGHLQGYRIYYWKTQS------SSKRNRRH 67
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKPS 638
K + LEP + Y V++ N + S + T
Sbjct: 68 IEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGP 122
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 51.6 bits (124), Expect = 4e-08
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 852 SLNFEMINASALRIRWHPP-SRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD---SG 907
+ +++ +++ W P S P+G + Y++ Y + G E + T +
Sbjct: 23 DVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFY-TKEGIARERVENTSHPGEMQVTIQN 81
Query: 908 LYLYDYPAGSYLFRLRVVSLGGEGPW 933
L PA Y+FR+ + G G
Sbjct: 82 L----MPATVYIFRVMAQNKHGSGES 103
Score = 46.6 bits (111), Expect = 2e-06
Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 13/88 (14%)
Query: 624 RSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEP-KHPHGILEKYVIKAYYQDYD-- 680
S T PS P V++ + L W P PHG Y + +Y
Sbjct: 5 SSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSV--FYTKEGIA 62
Query: 681 ------KDYLDTRNYCVDKLRDLSDSTY 702
+ + L + Y
Sbjct: 63 RERVENTSHPGEMQVTIQNLM--PATVY 88
Score = 34.3 bits (79), Expect = 0.045
Identities = 18/83 (21%), Positives = 21/83 (25%), Gaps = 14/83 (16%)
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYN 618
Y +FY K A + V + NL PAT Y F V N
Sbjct: 50 LTYSVFYTKEG-------------IARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQN 96
Query: 619 SQRI-VRSNISLQTTLPTKPSIP 640
S T P
Sbjct: 97 KHGSGESSAPLRVETQPESGPSS 119
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 51.3 bits (123), Expect = 6e-08
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 858 INASALRIRWHPP--SRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD--Y 913
++ + IRW P + +G +V Y I + +S G S+ + +++ ++
Sbjct: 31 ESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKEL---LEEVGQNGSRARISVQV 87
Query: 914 PAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
+ R+ V+ GG GP++ I + P S
Sbjct: 88 HNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSGPSS 123
Score = 37.1 bits (86), Expect = 0.005
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 625 SNISLQTTLPTKPSI-PYQFEVVRVNSS-SVTLRWGEP--KHPHGILEKYVIKAYYQD 678
S L +T PS+ P V SS +V +RW +P K G L Y I +Q
Sbjct: 6 SGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQS 63
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 50.6 bits (121), Expect = 8e-08
Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 8/81 (9%)
Query: 858 INASALRIRWHPP--SRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPA 915
+ + + W + Y + Y+ S N + + + + L L
Sbjct: 29 ATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNKTSAE----LVL--PIK 82
Query: 916 GSYLFRLRVVSLGGEGPWTSW 936
Y+ ++ + GG+G +
Sbjct: 83 EDYIIEVKATTDGGDGTSSEQ 103
Score = 42.9 bits (101), Expect = 5e-05
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 625 SNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEP--KHPHGILEKYVIKAYYQD 678
S TT T PS P V + V L W + + Y + Y
Sbjct: 6 SGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVF-YRTS 60
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 49.8 bits (119), Expect = 1e-07
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGL 908
P L + ++ + W P Y +E +GG + ++ + GL
Sbjct: 13 PILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGL 72
Query: 909 YLYDYPAGSYLFRLRVVSLGGEGPW 933
+ +Y R++ + G P+
Sbjct: 73 ----HFNSTYNARVKAFNKTGVSPY 93
Score = 39.0 bits (91), Expect = 9e-04
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 631 TTLPTKPSIP-YQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDT--- 686
+ P+ P Q E +++S TL W +P + Y++ D +
Sbjct: 4 GSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYIL--ELDDGNGGQFREVYV 61
Query: 687 ---RNYCVDKLRDLSDSTY 702
VD L +STY
Sbjct: 62 GKETMCTVDGLH--FNSTY 78
Score = 33.2 bits (76), Expect = 0.087
Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 17/82 (20%)
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYN 618
Y+L + G + + K V L + Y VK +N
Sbjct: 42 DGYILELDDGNGGQFR---------------EVYVGKETMCTVDGLHFNSTYNARVKAFN 86
Query: 619 SQRIVRSNISLQTTLPTKPSIP 640
S S L T
Sbjct: 87 K--TGVSPYSKTLVLQTSEGSG 106
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 52.0 bits (124), Expect = 2e-07
Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 11/154 (7%)
Query: 782 EENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEV 841
+E + SYT+ GL + + ++ + +D S + T
Sbjct: 47 KEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGE 106
Query: 842 DHLADTIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKD 901
+ A S + I AS+ + W S + + +EY S E
Sbjct: 107 TTPFSPLVATSESVTEITASSFVVSWVSAS---DTVSGFRVEY-ELSEEGDEPQYLDLPS 162
Query: 902 IDRD---SGLYLYDYPAGSYLFRLRVVSLGGEGP 932
L P Y+ + +S GE
Sbjct: 163 TATSVNIPDL----LPGRKYIVNVYQISEDGEQS 192
Score = 47.3 bits (112), Expect = 5e-06
Identities = 20/171 (11%), Positives = 43/171 (25%), Gaps = 41/171 (23%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDN---QRYVLFYMKADNGMYTDFDTVGSCSASGW 587
+ + S Q N P +Y+L + ++ W
Sbjct: 4 VEVFITETPSQPNSHPIQWN----APQPSHISKYILRWRPKNSV-------------GRW 46
Query: 588 KFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVR-SNISLQTTLPTKPS-------- 638
K I + + L+P Y + + TT + P
Sbjct: 47 KEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGE 106
Query: 639 -------IPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
+ V + +SS + W + + + Y+ ++
Sbjct: 107 TTPFSPLVATSESVTEITASSFVVSW---VSASDTVSGFRV--EYELSEEG 152
Score = 40.8 bits (95), Expect = 7e-04
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 9/111 (8%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR--DS 906
+ ++ I+W+ P I Y + ++ ++ ++
Sbjct: 4 VEVFITETPSQPNSHPIQWNAPQ--PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIK 61
Query: 907 GLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYVIVVVT 957
GL P Y +L + G T + S TP++ + T
Sbjct: 62 GLK----PGVVYEGQLISIQQYGHQEVTRFDF-TTTSTSTPVTSNTVTGET 107
Score = 30.8 bits (69), Expect = 1.7
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 13/62 (20%)
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYN 618
+ + Y ++ G ++ D+ S +V + +L P +Y V +
Sbjct: 140 SGFRVEYELSEEG-------------DEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQIS 186
Query: 619 SQ 620
Sbjct: 187 ED 188
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 51.9 bits (124), Expect = 2e-07
Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 9/127 (7%)
Query: 827 GRCSEETLVMSRTEVDHLADTIPADSLNFEMINASA--LRIRWHPPSRPNGIIVAYNIEY 884
G+ + + + P +L+ + L++ W PS + II+ YNI+Y
Sbjct: 87 GKVTSDHINFDPVYKVKPN---PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQY 143
Query: 885 KRESGGNSENMCRTRKDIDRDSGLYLYD-YPAGSYLFRLRVVSLGGEGPWTSWKPCVIES 943
+ + + R S + D P Y+FR+R + G+G W+ W S
Sbjct: 144 RTKDASTWSQIPPEDTASTRSS-FTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEA--S 200
Query: 944 AETPMSV 950
T
Sbjct: 201 GITYEDR 207
Score = 39.2 bits (91), Expect = 0.003
Identities = 11/105 (10%), Positives = 34/105 (32%), Gaps = 5/105 (4%)
Query: 853 LNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD 912
L+ + +R W R + + ++ + + ++ C+ ++D +
Sbjct: 14 LSCIVNEGKKMRCEWDGG-RETHLETNFTLKSEWATHKFAD--CKAKRDTPTSCTVDYST 70
Query: 913 YPAGSYLFRLRVVSLGGEGPW--TSWKPCVIESAETPMSVYVIVV 955
+ + + G+ ++ P P ++ VI
Sbjct: 71 VYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINS 115
Score = 37.7 bits (87), Expect = 0.009
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 602 MNLEPATEYAFFVKIYNSQRIVRS---NISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWG 658
+ +V+ N+ V S N + P SS + L W
Sbjct: 68 YSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWT 127
Query: 659 EPKHPHGILEKYVIK 673
P I+ KY I+
Sbjct: 128 NPSIKSVIILKYNIQ 142
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 53.0 bits (126), Expect = 2e-07
Identities = 34/304 (11%), Positives = 79/304 (25%), Gaps = 29/304 (9%)
Query: 646 VRVNS--SSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLR---DLSDS 700
V V+ + LRW G + YQ D + C + + S
Sbjct: 10 VEVDIIDDNFILRWNRSDESVGNV---TFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSL 66
Query: 701 TYAASHLMRF---AKTTRKPLKECCGKFPCDFDHESFQYMTSQMQLIQQCDNYIFKYLQY 757
++ A+ F F ++ +
Sbjct: 67 KLNVYEEIKLRIRAEKENTSSWYEVDSF-TPFRKAQIGPPEVHLEAEDKAIVIHISPGTK 125
Query: 758 NDLHKAYGGDLPSLGNISSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKD 817
+ + A G + + + E + + + + L + + A
Sbjct: 126 DSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKA------- 178
Query: 818 KFLPYDPEEGRCSEETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGII 877
L + G S + + + P +++ + N + + ++W
Sbjct: 179 -ALLTSWKIGVYSPVHCIKTT----VENELPPPENIEVSVQNQNYV-LKWDYTYANMTFQ 232
Query: 878 VAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD----YPAGSYLFRLRVVSLGGEGPW 933
V + + + + GN + D + + G YL R++ W
Sbjct: 233 VQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFW 292
Query: 934 TSWK 937
+
Sbjct: 293 SEEI 296
Score = 48.4 bits (114), Expect = 6e-06
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 4/104 (3%)
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI---VRSNISLQTTLPTKPSIPY 641
S + I + ++ L P T Y VK V S + T P
Sbjct: 147 SSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPP 206
Query: 642 QFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLD 685
+ V V + + L+W +++ + + ++L
Sbjct: 207 ENIEVSVQNQNYVLKWDYTYANMTFQVQWLHA-FLKRNPGNHLY 249
Score = 38.7 bits (89), Expect = 0.006
Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 19/121 (15%)
Query: 850 ADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSE------NMCRTRKDID 903
D ++ I +RW+ G + ++ +Y++ N N+ T+ +
Sbjct: 12 VDIIDDNFI------LRWNRSDESVGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFS 64
Query: 904 RDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESA-ETPMSVYVIVVVTGLVIL 962
L +Y R+R + A P V++ +VI
Sbjct: 65 -SLKLNVY----EEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIH 119
Query: 963 F 963
Sbjct: 120 I 120
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 48.9 bits (117), Expect = 3e-07
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD-SG 907
+ E + +++ + W PP + I Y + Y ++ E G
Sbjct: 20 QPLNFKAEPESETSILLSWTPP--RSDTIANYELVY-KDGEHGEEQRITIEPGTSYRLQG 76
Query: 908 LYLYDYPAGSYLFRLRVVSLGGEGPWTSW 936
L P Y FRL S G G T+
Sbjct: 77 L----KPNSLYYFRLAARSPQGLGASTAE 101
Score = 43.9 bits (104), Expect = 2e-05
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
T P P F+ + +S+ L W P + Y + Y+D +
Sbjct: 12 ITQTGVPGQPLNFKAEPESETSILLSWTPP--RSDTIANYEL--VYKDGEHG 59
Score = 41.9 bits (99), Expect = 8e-05
Identities = 12/108 (11%), Positives = 32/108 (29%), Gaps = 19/108 (17%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFK 590
N ++T + + + ++ + Y L Y ++G
Sbjct: 22 LNFKAEPESETSILLSWTPPRSDTI---ANYELVYKDGEHGEEQRITI------------ 66
Query: 591 DINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKP 637
+ + L+P + Y F + + Q + + T+ +
Sbjct: 67 ---EPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSG 111
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 48.5 bits (116), Expect = 3e-07
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 858 INASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAGS 917
+A+ ++ W P + Y +E+ G+ + GL PA +
Sbjct: 19 RSATCAQVNWEVPLSNGTDVTEYRLEWG-GVEGSMQICYCGPGLSYEIKGL----SPATT 73
Query: 918 YLFRLRVVSLGGEGPWTSWKPCV 940
Y R++ +S+ G GP++ CV
Sbjct: 74 YYCRVQALSVVGAGPFSEVVACV 96
Score = 43.1 bits (102), Expect = 3e-05
Identities = 5/42 (11%), Positives = 16/42 (38%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVI 672
++ + P +V +++ + W P + +Y +
Sbjct: 2 SSGSSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRL 43
Score = 30.0 bits (68), Expect = 1.0
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 578 TVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTK 636
+ G + E+ L PAT Y V+ + S + T P+
Sbjct: 42 RLEWGGVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSS 101
Query: 637 P 637
Sbjct: 102 G 102
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 5e-07
Identities = 107/624 (17%), Positives = 183/624 (29%), Gaps = 220/624 (35%)
Query: 77 DVLKDCTVVEGFVQINLIDNST---AQDFENITFPKLREITEYLSFYHVSGLKSIGKLFP 133
L++ F +I + T A D E T +L + ++L + VS L K+
Sbjct: 31 SQLQEQ-----FNKI--LPEPTEGFAADDEPTTPAEL--VGKFLGY--VSSLVEPSKVGQ 79
Query: 134 NLAIIRGNTLIWDYTFSVFSMFNLQEIGLHRLTHIMKGTVVILRNPDWKRITKKGSVVIN 193
++ + ++ + + L+ +H L L + + K +
Sbjct: 80 FDQVLN--LCLTEFE-NCY----LEGNDIHAL-------AAKLLQENDTTLVKTKEL--- 122
Query: 194 DIKS-KEACLQEGEPGARSGPEKCEFYWSNNDCQLIKEIEECH-PLCA--GGCTGKRAED 249
IK+ A + P + L + + E + L A GG
Sbjct: 123 -IKNYITARIMAKRPFDKKSNSA-----------LFRAVGEGNAQLVAIFGG-------- 162
Query: 250 CFVCIGFIHDGHCLDQCPPNLQGQVAT----LQRILYGGIRYSYMNRRCLTR-----EEC 300
QG L R LY Y + + E
Sbjct: 163 ---------------------QGNTDDYFEEL-RDLYQ--TYHVLVGDLIKFSAETLSEL 198
Query: 301 LNNKRVTTKNFPQNMRMSYSDKAKW--RPFNGSCMEECPPGYNTTADETSCVPCPDCP-- 356
+ K F Q + + +W P P + SC P
Sbjct: 199 IRTTLDAEKVFTQGL-----NILEWLENP------SNTPDKDYLLSIPISC------PLI 241
Query: 357 ---------KVCKGVHVKSIEVARSTKGCTVINGSL--GIQIQTGDS-EVVHQELEKGLG 404
K + E+ KG T + L + I DS E + K +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 405 MITNITGHLKISHSLPIQSLSFLKSLQSI-HGEREIIRGDTSESSVYSNYSLIVWDNPNL 463
++ I G ++ + P SL S+ + E G S L +
Sbjct: 302 VLFFI-G-VRCYEAYPNTSLPPSILEDSLENNE-----GVPS-------PMLSI------ 341
Query: 464 QELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYELINVTNITYDSDFDV---LKE 520
SNL Q + + +N TN + V L
Sbjct: 342 ------SNLTQEQ-----------------------VQDYVNKTNSHLPAGKQVEISLV- 371
Query: 521 SNG-DEF-ICGFSNLALVVLNKT--DVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDF 576
NG + G +L LN T L+++ ++P ++R + F + F
Sbjct: 372 -NGAKNLVVSGPP-QSLYGLNLTLRKAKAPSGLDQS-RIPFSERKLKFSNR--------F 420
Query: 577 DTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTK 636
V S F +S L PA++ I ++ +V++N+S
Sbjct: 421 LPVAS------PF---HSH-------LLVPASD-----LI--NKDLVKNNVSFN---AKD 454
Query: 637 PSIP-YQFE---VVRVNSSSVTLR 656
IP Y +RV S S++ R
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISER 478
Score = 45.0 bits (106), Expect = 1e-04
Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 39/135 (28%)
Query: 511 YDSDFDVLKE--SNGDEFIC---GFSNLALVVLNKTDVSIRFQLNENEKVPDNQRYVLFY 565
Y + ++ + D GFS L +V+ N +++I F + +++ +N Y
Sbjct: 1636 YKT-SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN------Y 1688
Query: 566 MKADNGMYTDFDTVGSCSASGWK-FKDINSKNKTV------EVMNL----EPA---TEYA 611
M F+T+ K FK+IN + + +++ +PA E A
Sbjct: 1689 SA----M--IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 612 FFVKIYNSQRIVRSN 626
F ++S
Sbjct: 1743 AF-------EDLKSK 1750
Score = 45.0 bits (106), Expect = 1e-04
Identities = 96/664 (14%), Positives = 170/664 (25%), Gaps = 274/664 (41%)
Query: 412 HLKISHSLPI-QSL---------SFLKSLQSIHGEREIIRGDTSESSVYSNYSLIVWDNP 461
H + H L + + F K L D +
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPE--PTEGFAADDEPTTPA------------ 58
Query: 462 NLQELWGWSNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYELINVTNITYDSDFDVLKES 521
EL G KF L + L+ + + VL
Sbjct: 59 ---ELVG----------KF----------------LGYVSSLVEPSKVG--QFDQVLNLC 87
Query: 522 NGDEFICGFSNLALVVLNKTDV-SIRFQLNENEKVPDNQRYVLF--YMKADNGMYTDFDT 578
EF + L D+ ++ +L + + L Y+ A FD
Sbjct: 88 L-TEFENCY-------LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD- 138
Query: 579 VGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFF-------------VKIYNSQR---- 621
S S F+ + N + A F +Y +
Sbjct: 139 --KKSNSAL-FRAVGEGNAQL----------VAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 622 --IVRSNISLQTTLPTKPSIPYQF-EVVRVNSSSVTLRWGE-P-KHPHGILEKYVIKAYY 676
I S +L + T F + + + L W E P P
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNI------LEWLENPSNTP------------- 226
Query: 677 QDYDKDYLDT-------------RNYCV---------DKLRD-LSDSTYAASHLM----- 708
DKDYL + +Y V +LR L +T + L+
Sbjct: 227 ---DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 709 -------RFAKTTRKPLK-------ECCGKFPCDFDHESFQYMTSQMQLIQQC------- 747
F + RK + C +E++ + +++
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRC---------YEAYPNTSLPPSILEDSLENNEGV 334
Query: 748 -----------DNYIFKYLQYNDLHKAYGGDLPSLGNISSRL---PDREENDVL--YPET 791
+ Y+ + H LP+ + L N V+ P+
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSH------LPAGKQVEISLVNGAK---NLVVSGPPQ- 384
Query: 792 SYTMVGLG-HFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRTEV----DHLA- 845
++ GL R A + + +P+ + + S L ++ L
Sbjct: 385 --SLYGLNLTLRK----AKAPSGLDQSR-IPFSERKLKFSNRFLPVA---SPFHSHLLVP 434
Query: 846 --DTIPADSLNFEM-INASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDI 902
D I D + + NA ++I P V Y+ + ++ I
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQI---P--------V-YDTF-------DGSDLRVLSGSI 475
Query: 903 DRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYVIV----VVTG 958
+ D + RL V W+ A T +++ +G
Sbjct: 476 SER----IVD-----CIIRLPV----------KWETTTQFKA-T----HILDFGPGGASG 511
Query: 959 LVIL 962
L +L
Sbjct: 512 LGVL 515
Score = 39.6 bits (92), Expect = 0.006
Identities = 66/410 (16%), Positives = 127/410 (30%), Gaps = 168/410 (40%)
Query: 651 SSVTLRWGEPKHP----HGILEKYVIKAYYQDYDKDYLDTRNYCV-DKLRDLSDSTYAAS 705
+ + R P HG LE +V+ + T ++ + +L++
Sbjct: 2 DAYSTR------PLTLSHGSLE-HVLL----------VPTASFFIASQLQE--------- 35
Query: 706 HLMRFAKTTRKPLKECCGKFPCDFDHE---------SF-QYMTSQMQLIQQCDNYI---- 751
+F K +P + D E F Y++S ++ + +
Sbjct: 36 ---QFNKILPEPTEGFAA------DDEPTTPAELVGKFLGYVSSLVE-PSKVGQFDQVLN 85
Query: 752 -----F--KYLQYNDLHKAYGGDLPSLGNISSRLPDREENDVL--Y---------PETSY 793
F YL+ ND+H A L + + +++ Y P
Sbjct: 86 LCLTEFENCYLEGNDIH-ALAAKLLQ----ENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 794 TMVGLGHFRSI---------VF----TISACRKEQKDKFLPYDPEEGRC---SEETLV-M 836
+ L FR++ +F +E +D + Y G S ETL +
Sbjct: 141 SNSAL--FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 837 SRTEVDHLADTIPADSLNFEMINASALRIRW--HPPSRPN--------------GII--V 878
RT +D A+ + LN + W +P + P+ G+I
Sbjct: 199 IRTTLD--AEKVFTQGLNI---------LEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 879 AYNIEYKRESGGNSENMCRTR--------KDI----------DRDSGLYLYDYPAGSYLF 920
Y + + G + R+ + + +S ++ A + LF
Sbjct: 248 HYVV-TAKLLGFTPGEL-RSYLKGATGHSQGLVTAVAIAETDSWES-FFVSVRKAITVLF 304
Query: 921 RLRVVSLGGEG----PWTSWKPCVIESAE-------TPMSVYVIVVVTGL 959
+G P TS P ++E + +PM + ++ L
Sbjct: 305 -----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM-----LSISNL 344
Score = 33.9 bits (77), Expect = 0.32
Identities = 41/272 (15%), Positives = 72/272 (26%), Gaps = 107/272 (39%)
Query: 245 KRAEDCFV-CIGF-IHDGHCLDQCPPNLQGQVATLQRILYGG-----IRYSYMNRRCLTR 297
RA++ F GF I D + P NL I +GG IR +Y +
Sbjct: 1647 NRADNHFKDTYGFSILD--IVINNPVNL--------TIHFGGEKGKRIRENYSA---MIF 1693
Query: 298 EECLNNKRVTTKNFP---------------------QN-----MRMSYSDKAKWR----- 326
E ++ K T K F Q M + +
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 327 ------------------------PFN---------GSCMEECPPGYNTTADETSCVPC- 352
G M+ P +
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 353 PDCPKVCKGVHVKSIE-----VARSTKG-CTVIN-GSLGIQIQTGDSEVVHQELEKGLGM 405
P +V ++++ V + T ++N Q V +L + L
Sbjct: 1814 PG--RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY------VAAGDL-RALDT 1864
Query: 406 ITNITGHLKISHSLPIQSLSFLKSLQSIHGER 437
+TN+ +K +Q + ++ +S+ E
Sbjct: 1865 VTNVLNFIK------LQKIDIIELQKSLSLEE 1890
Score = 31.2 bits (70), Expect = 2.5
Identities = 34/178 (19%), Positives = 52/178 (29%), Gaps = 56/178 (31%)
Query: 748 DNYI-FKYLQYNDLHKAYGGDLPSLGNISSRLPDREENDVLYPETSYTMVGLGHFRSIVF 806
+NY + D + S+ R E +L T +T L
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-ATQFTQPAL-------T 1737
Query: 807 TIS-ACRKEQKDKFLPYDPEE--------GRCSEET-LVMSRTEVDHLADTI-------- 848
+ A ++ K K L P + G E L S +V + +
Sbjct: 1738 LMEKAAFEDLKSKGL--IPADATFAGHSLG---EYAALA-SLADVMSIESLVEVVFYRGM 1791
Query: 849 ------PADSL---NFEMI-----------NASALRIRWHPPSRPNGI---IVAYNIE 883
P D L N+ MI + AL+ + G IV YN+E
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Score = 29.6 bits (66), Expect = 6.2
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 641 YQF---EVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLRDL 697
Y F ++V N ++T+ +G K I E Y ++ L T +
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEK-GKRIRENY-SAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 698 SDSTY 702
+ T+
Sbjct: 1715 TSYTF 1719
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 48.2 bits (115), Expect = 6e-07
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 16/82 (19%)
Query: 860 ASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD------SGLYLYDY 913
+ + + W PP PN ++ Y I Y S +D L
Sbjct: 30 TNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAET------VRVDSKQRYYSIERL----E 79
Query: 914 PAGSYLFRLRVVSLGGEGPWTS 935
+ Y+ L+ + GEG
Sbjct: 80 SSSHYVISLKAFNNAGEGVPLY 101
Score = 47.0 bits (112), Expect = 2e-06
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 624 RSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDY 683
S P P V R ++ + + W P +P+ ++ Y+I Y
Sbjct: 5 SSGPENDLDESQVPDQPSSLHV-RPQTNCIIMSWTPPLNPNIVVRGYII--GYGVGSPYA 61
Query: 684 L------DTRNYCVDKLRDLSDSTY 702
R Y +++L S S Y
Sbjct: 62 ETVRVDSKQRYYSIERLE--SSSHY 84
Score = 34.3 bits (79), Expect = 0.044
Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 583 SASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQ--RIVRSNISLQTTLPTKPS 638
+ + ++SK + + LE ++ Y +K +N+ + + ++ + PS
Sbjct: 57 GSPYAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGPS 114
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 52.3 bits (124), Expect = 7e-07
Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 859 NASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD----YP 914
+ + I W P P+ + Y + + S + ++ D P
Sbjct: 284 GSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQP 343
Query: 915 AGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYVIVVVT 957
Y+ L+ ++ G+ S K + ++ + +V T
Sbjct: 344 DCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKT 386
Score = 49.6 bits (117), Expect = 5e-06
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 12/120 (10%)
Query: 573 YTDFDTVGSCSASGWKFKDINSKNKT-VEVMNLEPATEYAFFVKIYNSQ-RIVRSNISLQ 630
+ ++ + V++ ++ P+ Y F V N + S
Sbjct: 198 RRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKH 257
Query: 631 TTLPTKPSIPYQFEVVRV--------NSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
PS P +R+ S +VT+ W P+ P + Y + ++
Sbjct: 258 FRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKV--FWSWMVSS 315
Score = 47.3 bits (111), Expect = 2e-05
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGN-SENMCRTRKDIDRDSG 907
P L F + + L ++W + V Y ++ + G + SE+ + + + +
Sbjct: 163 PRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTD 222
Query: 908 LY--LYD-YPAGSYLFRLRVVSLGGEGPWTSW 936
L D P+ Y FR+ V++ G +T+
Sbjct: 223 ERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAP 254
Score = 43.0 bits (100), Expect = 4e-04
Identities = 20/168 (11%), Positives = 42/168 (25%), Gaps = 31/168 (18%)
Query: 787 LYPETSY-------TMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRT 839
L Y ++ FT C + + L
Sbjct: 469 LSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKS--HKPIGCLGEAGHVLSKVLA 526
Query: 840 EVDHLADTIPADSLNFEMINASALRIRWHPPSRP-NGIIVAYNIEYKRESGGNSENMCRT 898
+ ++L+ + +N W + + + + + + +N
Sbjct: 527 KPENLSASFIVQDVN------ITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPN 580
Query: 899 RKDIDRD-----------SGLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
L P+ Y ++V++ GGEGP T
Sbjct: 581 SIISQSQILPSDHYVLTVPNL----RPSTLYRLEVQVLTPGGEGPATI 624
Score = 43.0 bits (100), Expect = 4e-04
Identities = 13/152 (8%), Positives = 40/152 (26%), Gaps = 29/152 (19%)
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTT------------ 632
+G + + + + +L + +Y V+ + ++ TT
Sbjct: 450 TGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHK 509
Query: 633 --------------LPTKPSIPYQFEVVRVNSSSVTLRWGEPKHP-HGILEKYVI--KAY 675
+ KP +V+ + + W K + + + +
Sbjct: 510 PIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEV 569
Query: 676 YQDYDKDYLDTRNYCVDKLRDLSDSTYAASHL 707
+ ++ L ++ +L
Sbjct: 570 TTESRQNSLPNSIISQSQILPSDHYVLTVPNL 601
Score = 38.0 bits (87), Expect = 0.018
Identities = 14/163 (8%), Positives = 43/163 (26%), Gaps = 17/163 (10%)
Query: 787 LYPETSY-------TMVGLGHFRSIVFTISACRKEQKDKFLPYDPEEGRCSEETLVMSRT 839
L P+ Y T G +S ++ + E+ + + + ++
Sbjct: 341 LQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHA-----TNNKEQLVKTRKGGIQTQL 395
Query: 840 EVDHLADTIPAD-SLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRT 898
T P + F +++ W + + Y++ + E+ ++
Sbjct: 396 PFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT--EDPTVNRYHVRWFPEACAHNRTTGSE 453
Query: 899 RKDIDRDSGLYLYD--YPAGSYLFRLRVVSLGGEGPWTSWKPC 939
+ + Y ++ + +
Sbjct: 454 ASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFT 496
Score = 36.1 bits (82), Expect = 0.056
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 10/111 (9%)
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYN 618
Y +F+ + + K + +V + L+P +Y ++
Sbjct: 303 HHYKVFWSWMVSSKSLVPTKK-------KRRKTTDGFQNSVILEKLQPDCDYVVELQAIT 355
Query: 619 SQ---RIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGI 666
R+ + +SL T + Q R L + + +
Sbjct: 356 YWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPL 406
Score = 34.6 bits (78), Expect = 0.17
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 8/111 (7%)
Query: 561 YVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQ 620
+ + + + + S S + S + + V NL P+T Y V++
Sbjct: 562 FQVTWAEVTTESRQNSLPNSIISQSQI----LPSDHYVLTVPNLRPSTLYRLEVQVLTPG 617
Query: 621 RIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVT---LRWGEPKHPHGILE 668
+ I T PS ++ + + R+G+P P+ +L
Sbjct: 618 GEGPATIKTFRTPELPPSSAHRSHLKHRHPHHYKPSPERYGKP-IPNPLLG 667
Score = 34.2 bits (77), Expect = 0.28
Identities = 6/77 (7%), Positives = 20/77 (25%), Gaps = 1/77 (1%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYC 690
+ + S + ++W + YV++ +Y +
Sbjct: 155 LYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQ-RRWNYGIHPSEDDATH 213
Query: 691 VDKLRDLSDSTYAASHL 707
+ +D + +
Sbjct: 214 WQTVAQTTDERVQLTDI 230
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 50.1 bits (120), Expect = 7e-07
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 856 EMINASALRIRWHPPSRP--NGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDY 913
+ + L I W P N Y + +KR+ + D +++ +
Sbjct: 114 QGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENN-NIFDWRQNNIVIADQP 172
Query: 914 PAGSYLFRLRVVSLGGEGPWTSWKPCVIESAE 945
YL ++ ++ GE + V S E
Sbjct: 173 TFVKYLIKVVAINDRGESNVAAE-EVVGYSGE 203
Score = 45.9 bits (109), Expect = 2e-05
Identities = 18/123 (14%), Positives = 34/123 (27%), Gaps = 25/123 (20%)
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGW-KFKDINSKNKTVEVMNLEPATEYAFFVKIY 617
Y + + + + + W + + V+ + P Y F V +
Sbjct: 36 LHYTIQFNTSF-------------TPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAF 82
Query: 618 N----SQRIVRSNISLQ-TTLPTKPSI-PYQFEVVRVNSSSVTLRWGEPKHP--HGILEK 669
N S S S TT P P P +++ + W +
Sbjct: 83 NKIGASP---PSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFH 139
Query: 670 YVI 672
Y +
Sbjct: 140 YYV 142
Score = 40.9 bits (96), Expect = 7e-04
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 7/105 (6%)
Query: 858 INASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS---GLYLYDYP 914
A I W I+ Y I++ S + + S + P
Sbjct: 16 CQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQM----SP 71
Query: 915 AGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSVYVIVVVTGL 959
+Y FR+ + G P ++ + P VV G
Sbjct: 72 WANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGT 116
Score = 32.0 bits (73), Expect = 0.58
Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 633 LPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVI-------KAYYQDYDKDYLD 685
+P P + + + + W + + Y I A + + +
Sbjct: 5 VPNAPKLT----GITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPN 60
Query: 686 TRNYCVDKLR 695
T + V ++
Sbjct: 61 TDSSFVVQMS 70
Score = 30.1 bits (68), Expect = 2.6
Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 15/92 (16%)
Query: 531 SNLALVVLNKTDVSIRFQ-LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKF 589
N+ ++ I + + E E N Y + + + A+ W+
Sbjct: 109 DNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDI-------------PAAAWEN 155
Query: 590 KDI-NSKNKTVEVMNLEPATEYAFFVKIYNSQ 620
+I + + + + + +Y V N +
Sbjct: 156 NNIFDWRQNNIVIADQPTFVKYLIKVVAINDR 187
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 47.1 bits (112), Expect = 9e-07
Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 9/101 (8%)
Query: 845 ADTIPA--DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDI 902
++ + L ++L I W P + + Y I Y G +
Sbjct: 1 GSSVSSVPTKLEVVAATPTSLLISWDAPM-SSSSVYYYRITYGETGGNSPVQEFTVPYSS 59
Query: 903 DR--DSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVI 941
SGL P Y + G + P I
Sbjct: 60 STATISGL----SPGVDYTITVYAWGEDSAGYMFMYSPISI 96
Score = 39.0 bits (91), Expect = 8e-04
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 635 TKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
+ S+P + EVV +S+ + W P + Y I Y + +
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAPMSSSSV-YYYRI--TYGETGGN 47
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 51.5 bits (122), Expect = 9e-07
Identities = 33/332 (9%), Positives = 74/332 (22%), Gaps = 31/332 (9%)
Query: 646 VRVNS--SSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLR---DLSDS 700
V V+ + LRW G YQ D + C + + S
Sbjct: 14 VEVDIIDDNFILRWNRSDESVG---NVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSL 70
Query: 701 TYAASHLMRF---AKTTRKPLKECCGKFPCDFDHESFQYMTSQMQLIQQCDNYIFKYLQY 757
++ A+ F F ++ +
Sbjct: 71 KLNVYEEIKLRIRAEKENTSSWYEVDSF-TPFRKAQIGPPEVHLEAEDKAIVIHISPGTK 129
Query: 758 NDLHKAYGGDLPSLGNISSRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKD 817
+ + A G + + + E + + + + L + + A
Sbjct: 130 DSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWK 189
Query: 818 KFLPYDPEEGRCSEETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSRPNGII 877
+ + + I N + ++W
Sbjct: 190 IG-------VYSPVHCIKTTVENELPPPENIEVSVQNQNYV------LKWDYTYANMTFQ 236
Query: 878 VAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD----YPAGSYLFRLRVVSLGGEGPW 933
V + + + + GN + D + + G YL R++ W
Sbjct: 237 VQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFW 296
Query: 934 TSWKPCVIESAETPM--SVYVIVVVTGLVILF 963
+ E + + + I
Sbjct: 297 SEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYI 328
Score = 37.3 bits (85), Expect = 0.026
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 3/104 (2%)
Query: 582 CSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRS---NISLQTTLPTKPS 638
S + I + ++ L P T Y VK + T
Sbjct: 148 WKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENEL 207
Query: 639 IPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
P + V V + + L+W +++ ++
Sbjct: 208 PPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNH 251
Score = 35.4 bits (80), Expect = 0.093
Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 18/105 (17%)
Query: 539 NKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKT 598
+ + I P Q Y L Y + + + I K
Sbjct: 322 DSFHIYIGAPKQSGNT-PVIQDYPLIY------------EIIFWENTSNAERKIIEKKTD 368
Query: 599 VEVMNLEPATEYAFFVKIYNSQRIV-----RSNISLQTTLPTKPS 638
V V NL+P T Y + + + S+ + T P S
Sbjct: 369 VTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNTS 413
Score = 29.6 bits (65), Expect = 5.7
Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 13/121 (10%)
Query: 560 RYVLFYMKADNGMYTD-FDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYN 618
+++ ++K + G + + + C N+ Y V+ +
Sbjct: 238 QWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQ--------NVFQKGIYLLRVQASD 289
Query: 619 SQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSS--SVTLRWGEPKHPHGILEKYVIKAYY 676
S S + T+ V + S S + G PK Y
Sbjct: 290 GNN--TSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIY 347
Query: 677 Q 677
+
Sbjct: 348 E 348
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 47.1 bits (112), Expect = 9e-07
Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 7/89 (7%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR--DS 906
P L ++L+I W + Y I Y G + S
Sbjct: 11 PTK-LEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATIS 69
Query: 907 GLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
GL P Y + G +
Sbjct: 70 GL----KPGVDYTITVYAYDTFFPGYEPN 94
Score = 41.7 bits (98), Expect = 8e-05
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 635 TKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
+ S+P + EVV +S+ + W ++ Y I Y + D
Sbjct: 6 SVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRI--TYGETGGD 51
Score = 29.0 bits (65), Expect = 2.1
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 535 LVVLNKTDVSIRFQ----LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFK 590
L V++ T S++ + + V + Y + Y + S +
Sbjct: 14 LEVVDATPTSLKISWDAYYSSWQNV---KYYRITYGETGGD-------------SPVQEF 57
Query: 591 DINSKNKTVEVMNLEPATEYAFFVKIYNS 619
+ T + L+P +Y V Y++
Sbjct: 58 TVPGYYSTATISGLKPGVDYTITVYAYDT 86
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 47.5 bits (113), Expect = 1e-06
Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 18/112 (16%)
Query: 531 SNLALVVLNKTDVSIRFQ---LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGW 587
+ +L+ + I + L +++K+ D++ Y + + +
Sbjct: 13 VGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTN--------------IPANT 58
Query: 588 KFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKPS 638
K+K+ N+ + V L+P T Y F V + +R S + TT
Sbjct: 59 KYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGP 110
Score = 42.5 bits (100), Expect = 6e-05
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 9/92 (9%)
Query: 847 TIPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYK-RESGGNSENMCRTRKDIDRD 905
+P + +++ +RI W S P + + Y R N +
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 68
Query: 906 S----GLYLYDYPAGSYLFRLRVVSLGGEGPW 933
S GL P Y F + V W
Sbjct: 69 SYLVTGL----KPNTLYEFSVMVTKGRRSSTW 96
Score = 34.4 bits (79), Expect = 0.040
Identities = 6/48 (12%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 631 TTLPTKPSI-PYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQ 677
++ + P + P + ++ ++ + W + P YY
Sbjct: 2 SSGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSR--YYT 47
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 50.6 bits (120), Expect = 1e-06
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 849 PADSLNFEMINASA--LRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS 906
P +L+ + L++ W PS + II+ YNI+Y+ + + R S
Sbjct: 202 PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSS 261
Query: 907 GLYLYD-YPAGSYLFRLRVVSLGGEGPWTSW 936
+ D P Y+FR+R + G+G W+ W
Sbjct: 262 -FTVQDLKPFTEYVFRIRCMKEDGKGYWSDW 291
Score = 36.7 bits (84), Expect = 0.029
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 602 MNLEPATEYAFFVKIYNSQRIVRS---NISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWG 658
+ +V+ N+ V S N + P SS + L W
Sbjct: 164 YSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWT 223
Query: 659 EPKHPHGILEKYVIK 673
P I+ KY I+
Sbjct: 224 NPSIKSVIILKYNIQ 238
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 47.4 bits (113), Expect = 1e-06
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 637 PSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYL------DTRNYC 690
P +P V R +S+ + W P++ + ++ Y I Y R Y
Sbjct: 28 PEVPSSLHV-RPLVTSIVVSWTPPENQNIVVRGYAI--GYGIGSPHAQTIKVDYKQRYYT 84
Query: 691 VDKLRDLSDSTY 702
++ L S Y
Sbjct: 85 IENLD--PSSHY 94
Score = 46.7 bits (111), Expect = 2e-06
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 8/92 (8%)
Query: 860 ASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD--YPAGS 917
+++ + W PP N ++ Y I Y S +D Y + P+
Sbjct: 40 VTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQT------IKVDYKQRYYTIENLDPSSH 93
Query: 918 YLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
Y+ L+ + GEG P S
Sbjct: 94 YVITLKAFNNVGEGIPLYESAVTRPHTSGPSS 125
Score = 32.4 bits (74), Expect = 0.21
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 583 SASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQ--RIVRSNISLQTTLPTKPS 638
+ + ++ K + + NL+P++ Y +K +N+ I ++ + PS
Sbjct: 67 GSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPS 124
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 45.9 bits (109), Expect = 3e-06
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 845 ADTIPADSLNFEMINASALRIRWHP--PSRPNGIIVAYNIEYKRESGGNSENMCRTRKDI 902
A+++ SL L + W P P G + +Y + + + + R +
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNL-SYELHVLNQDEEWHQMVLEPRVLL 66
Query: 903 DRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSW 936
+ L P +Y+ R+R ++ G GP++
Sbjct: 67 ---TKLQ----PDTTYIVRVRTLTPLGPGPFSPD 93
Score = 40.9 bits (96), Expect = 2e-04
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRW--GEPKHPHGILEKYVIKAYYQDYDKDYLDTRN 688
++ S ++V+ + L W P++P G L Y + QD + +
Sbjct: 5 SSGAESLS-GLSLKLVKKEPRQLELTWAGSRPRNPGGNLS-YELHVLNQDEEWHQMVLEP 62
Query: 689 YCVDKLRDLS-DSTY 702
+ L L D+TY
Sbjct: 63 RVL--LTKLQPDTTY 75
Score = 30.5 bits (69), Expect = 0.78
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 22/112 (19%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDN--QRYVLFYMKADNGMYTDFDTVGSCSASGWK 588
S L+L ++ K + + Y L + D +
Sbjct: 12 SGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQ-------------- 57
Query: 589 FKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVR--SNISLQTTLPTKPS 638
V + L+P T Y V+ + +T+ P+ PS
Sbjct: 58 ----MVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPSGPS 105
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 46.0 bits (109), Expect = 3e-06
Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 18/112 (16%)
Query: 531 SNLALVVLNKTDVSIRFQ---LNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGW 587
+ V L V + + + +N+K + + Y + + + ++
Sbjct: 23 VGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTS--------------FSASA 68
Query: 588 KFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKPS 638
K+K ++ + + L+P T Y F V + ++R S + TT
Sbjct: 69 KYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGP 120
Score = 42.2 bits (99), Expect = 1e-04
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVA----YNIEYKRESGGNSENMCRTRKDID- 903
P + + A+R+ W S P + Y + ++ +++ +
Sbjct: 21 PPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSY 80
Query: 904 RDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
+GL P Y F + V W+
Sbjct: 81 TATGL----KPNTMYEFSVMVTKNRRSSTWSM 108
Score = 33.3 bits (76), Expect = 0.11
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 625 SNISLQTTLPTKPSI-PYQFEVVRVNSSSVTLRWGEPKHP----HGILEKYVIK 673
S + P + P + V + +V + W + P + Y ++
Sbjct: 6 SGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVR 59
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 45.9 bits (109), Expect = 4e-06
Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 858 INASALRIRWHPPSRPNGI-IVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD-YPA 915
+S ++++ P G+ I+ Y E++ + K+ + + + P
Sbjct: 18 PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPE 77
Query: 916 GSYLFRLRVVSLGGEGPWTSWKPCVIESAETP 947
+Y RL ++ G G ++ + P
Sbjct: 78 TTYAVRLAALNGKGLGEISAASEFKTQPVREP 109
Score = 37.1 bits (86), Expect = 0.006
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHG--ILEKYVIKAYYQDYDKDYLDTRN 688
++ + PS P + V SS+ +++ EP+ G IL KY ++ ++ ++
Sbjct: 2 SSGSSGPSSP-SIDQVEPYSSTAQVQFDEPEATGGVPIL-KYKA--EWRAVGEEVWHSKW 57
Query: 689 YCVDKLRDLSDSTYAASHL 707
Y + + L
Sbjct: 58 YDAKE--ASMEGIVTIVGL 74
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 49.2 bits (116), Expect = 5e-06
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGL 908
SL + IN++ + W+ P I + IE + + R D +
Sbjct: 389 DPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHV 448
Query: 909 YLYD-YPAGSYLFRLRVVSLGGEGPWTSW 936
+ P +Y FR+R S W+ W
Sbjct: 449 AVDKLNPYTAYTFRVR-CSSKTFWKWSRW 476
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 44.6 bits (105), Expect = 1e-05
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 9/97 (9%)
Query: 858 INASALRIRWHPPSRPNG-IIVAYNIEYKRESGGNSENMCRTRKDID----RDSGLYLYD 912
+ ++ + W + + + E + GL
Sbjct: 27 VTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLE--- 83
Query: 913 YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
P Y FRL+V S GE ++ P S
Sbjct: 84 -PRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGPSS 119
Score = 37.6 bits (87), Expect = 0.003
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 7/78 (8%)
Query: 630 QTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNY 689
+ +KP P V +V S+ L W + + + + + D + +
Sbjct: 12 KVVPLSKPHPP---VVGKVTHHSIELYWDLEQKEKR----QGPQEQWLRFSIEEEDPKMH 64
Query: 690 CVDKLRDLSDSTYAASHL 707
+ + + L
Sbjct: 65 SYGVIYTGYATRHVVEGL 82
Score = 34.2 bits (78), Expect = 0.052
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 17/110 (15%)
Query: 534 ALVVLNKTD--VSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKD 591
VV T + + + L + EK Q L + ++ +
Sbjct: 21 PPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRF------------SIEEEDPKMHSYGV 68
Query: 592 I-NSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRS--NISLQTTLPTKPS 638
I V LEP T Y F +K+ + +S+ TT + PS
Sbjct: 69 IYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGPS 118
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 47.1 bits (111), Expect = 2e-05
Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 15/130 (11%)
Query: 849 PADSLNFEMINASALRIRWHPP-SRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSG 907
P L F ++ ++++W P Y IE + + ++ ++
Sbjct: 240 PPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTL------VTATVENETY 293
Query: 908 LYLYDYPAGSYLFRLRV---VSLGGEGPWTSW-KPCVIE----SAETPMSVYVIVVVTGL 959
F +R + +G W+ W E S +T + ++ +
Sbjct: 294 TLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSKKTLLRFWLPFGFILI 353
Query: 960 VILFCMLAVI 969
+++F ++
Sbjct: 354 LVIFVTGLLL 363
Score = 32.5 bits (73), Expect = 0.64
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 5/85 (5%)
Query: 859 NASALRIRWHPP---SRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPA 915
L ++W PP V Y ++Y+ G + T+ +D G L
Sbjct: 45 YLGYLYLQWQPPLSLDHFKECTVEYELKYRNI-GSETWKTIITKNLHYKD-GFDLNKGIE 102
Query: 916 GSYLFRLRVVSLGGEGPWTSWKPCV 940
L G +SW
Sbjct: 103 AXIHTLLPWQCTNGSEVQSSWAETT 127
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 44.0 bits (104), Expect = 2e-05
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNG-IIVAYNIEYKRESGGNSENMCRTRKDID-RDS 906
P I++ + +I W PP G I Y +E S GN M + +
Sbjct: 21 PVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCD 80
Query: 907 GLYLYDYPAGSYLFRLRVVSLGGEGPW 933
L P Y R+ +S GG+
Sbjct: 81 RLN----PGCFYRLRVYCISDGGQSAV 103
Score = 40.5 bits (95), Expect = 3e-04
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 625 SNISLQTTLPTKPSIPYQFEVV-RVNSSSVTLRWGEPKHPHG-ILEKYVI 672
S + TT P KP IP + V +++S S + W PK G + KYV+
Sbjct: 6 SGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVV 55
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 43.7 bits (103), Expect = 2e-05
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 853 LNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD 912
N ++ + +++ W R I Y + Y++ SG + + + +
Sbjct: 22 HNPVVLTPTTVQVTWTVD-RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLV 80
Query: 913 --YPAGSYLFRLRVVSLGGEGPWTSWKPC 939
+Y ++R +G + K
Sbjct: 81 NLKKGVTYEIKVRPYFNEFQGMDSESKTV 109
Score = 36.4 bits (84), Expect = 0.008
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 535 LVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINS 594
VVL T V + + ++ + Y + Y + G + S W+ D
Sbjct: 24 PVVLTPTTVQVTWTVDRQPQFIQG--YRVMYRQTS----------GLQATSSWQNLDAKV 71
Query: 595 KN-KTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLP 634
++ ++NL+ Y V+ Y ++ + S T
Sbjct: 72 PTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113
Score = 32.2 bits (73), Expect = 0.23
Identities = 7/69 (10%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 644 EVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLRDLSDSTYA 703
V + ++V + W + ++ Y + Y+ T ++ + ++ +
Sbjct: 23 NPVVLTPTTVQVTWTVDR-QPQFIQGYRV--MYRQTSGLQ-ATSSWQNLDAKVPTERSAV 78
Query: 704 ASHLMRFAK 712
+L +
Sbjct: 79 LVNLKKGVT 87
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 43.4 bits (102), Expect = 3e-05
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 14/97 (14%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGL 908
P N ++ ++ +RW P IV + ++Y+ G +N T +I
Sbjct: 5 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMV--GKRKNWQTTNDNIPYGKPK 62
Query: 909 YLYDY------------PAGSYLFRLRVVSLGGEGPW 933
+ + P +Y FR+ V +
Sbjct: 63 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE 99
Score = 37.6 bits (87), Expect = 0.003
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 633 LPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVI 672
P+ P V R++ SV LRW P++ + + +
Sbjct: 2 STYPPTPP---NVTRLSDESVMLRWMVPRNDGLPIVIFKV 38
Score = 32.6 bits (74), Expect = 0.16
Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQRYVLFY-MKADNGMYTDFDTVGSCSASGWKF 589
+ + L+ V +R+ + N+ +P + + Y M + + + K+
Sbjct: 7 TPPNVTRLSDESVMLRWMVPRNDGLP-IVIFKVQYRMVGKRKNWQTTND--NIPYGKPKW 63
Query: 590 KDINSKNKTVEVMNLEPATEYAFFVKIYNSQ-RIVRSNISLQTTLPTKPSI 639
K+ T V +L+P Y F + S SN S + L ++
Sbjct: 64 NSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAAL 114
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 45.7 bits (107), Expect = 4e-05
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 855 FEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD-Y 913
A L++ W P I + +K + G S + L
Sbjct: 217 AAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLP--LEALQYELCGLL 274
Query: 914 PAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMSV 950
PA +Y ++R + G W+ W P + T
Sbjct: 275 PATAYTLQIRCIRWPLPGHWSDWSPSL--ELRTTERA 309
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 42.3 bits (100), Expect = 5e-05
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHG------ILEKYVIKAYYQDYDKDYL 684
++ + PS+P + + + ++L+W +P ILE + Y K
Sbjct: 2 SSGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDG 61
Query: 685 DTRNYCVDKLRDLSDSTY 702
+ Y V LR + Y
Sbjct: 62 EDLAYTVKNLR--RSTKY 77
Score = 37.7 bits (88), Expect = 0.002
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 12/81 (14%)
Query: 858 INASALRIRWHPPSRPNG-IIVAYNIEYKRESGG----NSENMCRTRKDIDRDSGLYLYD 912
+ L ++W PS ++Y +E + E+ G + + L
Sbjct: 19 AGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVK---NL---- 71
Query: 913 YPAGSYLFRLRVVSLGGEGPW 933
+ Y F++ + G+
Sbjct: 72 RRSTKYKFKVIAYNSEGKSNP 92
Score = 31.9 bits (73), Expect = 0.24
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 20/82 (24%)
Query: 561 YVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQ 620
Y+L + +G + ++ V NL +T+Y F V YNS
Sbjct: 42 YILEMEEETSG--------------YGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNS- 86
Query: 621 RIVRSNIS----LQTTLPTKPS 638
+SN S T + PS
Sbjct: 87 -EGKSNPSEVVEFTTCPDSGPS 107
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 44.4 bits (104), Expect = 5e-05
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 5/97 (5%)
Query: 854 NFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD- 912
+ L + W P + + Y+ + G + + L
Sbjct: 122 DVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLP--SSKDQFELCGL 179
Query: 913 YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
+ A Y ++R + G W+ W P + M
Sbjct: 180 HQAPVYTLQMRCIRSSLPGFWSPWSPGL--QLRPTMK 214
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 45.2 bits (106), Expect = 6e-05
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 9/113 (7%)
Query: 840 EVDHLADTIPADSLNFEMINAS--ALRIRWHPPS--RPNGIIVAYNIEYKRESGGNSENM 895
+ + P ++ + + L + W P + + + + Y+ E
Sbjct: 190 QGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFT-- 247
Query: 896 CRTRKDIDRDSGLYLYD-YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETP 947
T D ++D + ++ +LR G+G W+ W P + + T
Sbjct: 248 --TWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTE 298
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 44.3 bits (104), Expect = 7e-05
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVA---YNIEYKRESGGNSENMCRTRKDIDRD 905
+L + L + W P P+ + Y + E+ + ++
Sbjct: 100 APGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRI-YNVTYLEPS 158
Query: 906 SGLYLYD-YPAGSYLFRLRVVSLGGEGPWTSW 936
+ SY R+R + W+ W
Sbjct: 159 LRIAASTLKSGISYRARVRAWAQAYNTTWSEW 190
Score = 28.8 bits (64), Expect = 7.4
Identities = 11/71 (15%), Positives = 24/71 (33%)
Query: 602 MNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPK 661
+ ++ + + + + S + + KP P V S ++ L W P
Sbjct: 63 LLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPY 122
Query: 662 HPHGILEKYVI 672
P L ++
Sbjct: 123 PPDNYLYNHLT 133
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 41.7 bits (98), Expect = 1e-04
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 11/92 (11%)
Query: 845 ADTIPA--DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDI 902
+ + +L +L++ W PP G ++ Y + Y SG E
Sbjct: 4 GSSGRSPPSNLALASETPDSLQVSWTPP---LGRVLHYWLTYAPASGLGPEKSVSVPGAR 60
Query: 903 DR--DSGLYLYDYPAGSYLFRLRVVSLGGEGP 932
L A Y + + G
Sbjct: 61 SHVTLPDL----QAATKYRVLVSAIYAAGRSE 88
Score = 38.2 bits (89), Expect = 0.001
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
++ + S P + S+ + W P G + Y + Y
Sbjct: 2 SSGSSGRSPPSNLALASETPDSLQVSW---TPPLGRVLHYWL--TYAPASGL 48
Score = 33.2 bits (76), Expect = 0.075
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 535 LVVLNKTDVSIRFQLNENEKVPDN-QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDIN 593
L + ++T S++ Y L Y A +V
Sbjct: 14 LALASETPDSLQVSW---TPPLGRVLHYWLTYAPASGLGPEKSVSVP------------G 58
Query: 594 SKNKTVEVMNLEPATEYAFFVK-IYNSQRIVRSNISLQTTLPTKPS 638
+++ V + +L+ AT+Y V IY + R + + QT P+ PS
Sbjct: 59 ARS-HVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGPS 103
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 41.2 bits (97), Expect = 1e-04
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 858 INASALRIRWHPPSRPNGI-IVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD-YPA 915
+S ++++ P G+ I+ Y E++ + K+ + + + P
Sbjct: 17 PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPE 76
Query: 916 GSYLFRLRVVSLGGEGPWTS 935
+Y RL ++ G G ++
Sbjct: 77 TTYAVRLAALNGKGLGEISA 96
Score = 38.9 bits (91), Expect = 9e-04
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 630 QTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHG--ILEKYVIKAYYQDYDKDYLDTR 687
P+ PSI V SS+ +++ EP+ G IL KY ++ ++ ++
Sbjct: 3 HMDTPSSPSID----QVEPYSSTAQVQFDEPEATGGVPIL-KYKA--EWRAVGEEVWHSK 55
Query: 688 NYCVDKLRDLSDSTYAASHL 707
Y + + L
Sbjct: 56 WYDAKE--ASMEGIVTIVGL 73
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 40.5 bits (95), Expect = 2e-04
Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 9/85 (10%)
Query: 853 LNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR--DSGLYL 910
L ++L I W + + Y I Y G + SGL
Sbjct: 11 LEVVAATPTSLLISWDAS---SSSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGL-- 65
Query: 911 YDYPAGSYLFRLRVVSLGGEGPWTS 935
P Y + + ++
Sbjct: 66 --SPGVDYTITVYAYYSYYDLYYSY 88
Score = 36.2 bits (84), Expect = 0.007
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 635 TKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
+ S+P + EVV +S+ + W + Y I Y + +
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISW---DASSSSVSYYRI--TYGETGGN 45
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 40.7 bits (95), Expect = 2e-04
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 13/102 (12%)
Query: 852 SLNFEMINASALRIRWHPPS---RPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGL 908
N L + W PS P + + + Y+ +++ ++ +
Sbjct: 15 VARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHV-----ELSNGTAH 69
Query: 909 YLYD-YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETPMS 949
+ D Y Y+ ++ G W+ W + TP +
Sbjct: 70 TITDAYAGKEYIIQVAAKDN-EIGTWSDWSV---AAHATPWT 107
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 41.2 bits (97), Expect = 2e-04
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS-- 906
D + +++ + W P I ++ +EYK+ + + R S
Sbjct: 20 APDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVE 79
Query: 907 --GLYLYDYPAGSYLFRLRVVSLGGEGPW 933
GL SY FR+R +++ GE
Sbjct: 80 ITGL----EKGISYKFRVRALNMLGESEP 104
Score = 33.1 bits (76), Expect = 0.100
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 625 SNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHG--ILEKYVI 672
S + P P + + + +SV + W P+ G I + +
Sbjct: 6 SGSQPDHGRLSPPEAPDRPTISTASETSVYVTW-IPRGNGGFPIQ-SFRV 53
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 40.9 bits (96), Expect = 2e-04
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 15/79 (18%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYC 690
++ + P P Q + + L W K P ++ Y I+
Sbjct: 2 SSGSSGPDGPTQLRALNLTEGFAVLHW---KPPQNPVDTYDIQ-----VTAPGAPPLQAE 53
Query: 691 VDK------LRDLS-DSTY 702
L DL + Y
Sbjct: 54 TPGSAVDYPLHDLVLHTNY 72
Score = 39.3 bits (92), Expect = 8e-04
Identities = 16/120 (13%), Positives = 27/120 (22%), Gaps = 20/120 (16%)
Query: 535 LVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINS 594
L LN T+ + D Y + + +
Sbjct: 14 LRALNLTEGFAVLHWKPPQNPVDT--YDIQVTAPG---------------APPLQAETPG 56
Query: 595 KNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVT 654
+ +L T Y V+ ++ T T P E V S +
Sbjct: 57 SAVDYPLHDLVLHTNYTATVRGLRGPN--LTS-PASITFTTGLEAPRDLEAKEVTPSGPS 113
Score = 32.8 bits (75), Expect = 0.12
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 12/89 (13%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGL 908
P L + + W PP P + Y+I+ + + +
Sbjct: 11 PTQ-LRALNLTEGFAVLHWKPPQNP---VDTYDIQVTAPGAPPLQ------AETPGSAVD 60
Query: 909 Y-LYD-YPAGSYLFRLRVVSLGGEGPWTS 935
Y L+D +Y +R + S
Sbjct: 61 YPLHDLVLHTNYTATVRGLRGPNLTSPAS 89
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 40.8 bits (96), Expect = 2e-04
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGI-IVAYNIEYKRESGG-----NSENMCRTRKDI 902
P L + + + + +RW PP + Y +EY E N + + +T+ I
Sbjct: 10 PPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTI 69
Query: 903 DRDSGLYLYDYPAGSYLFRLRVVSLGGEGPW 933
+GL R++ V+ G
Sbjct: 70 ---TGLP----TDAKIFVRVKAVNAAGASEP 93
Score = 36.9 bits (86), Expect = 0.005
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGI-LEKYVI 672
++ + S P V V ++VT+RW P H L+ YV+
Sbjct: 2 SSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVL 44
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 42.5 bits (99), Expect = 3e-04
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 9/116 (7%)
Query: 851 DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYL 910
S+N + + ++W PP G+ V Y ++Y N R L
Sbjct: 18 LSINMKNV------LQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSA 71
Query: 911 YD-YPAGSYLFRLRVVSLGGEGPW--TSWKPCVIESAETPMSVYVIVVVTGLVILF 963
Y R+R + W + +E+ P V + + ++
Sbjct: 72 ETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVL 127
Score = 34.8 bits (79), Expect = 0.077
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 578 TVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQ---TTLP 634
V + + N T+ + LEP T Y V+ + R+ S + TL
Sbjct: 154 NVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLK 213
Query: 635 TKPSIP 640
+ SI
Sbjct: 214 DQSSIE 219
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 42.1 bits (98), Expect = 3e-04
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 11/117 (9%)
Query: 851 DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENM--CRTRKDIDRDSGL 908
S NF I ++W P G Y ++YK +N C +++ D
Sbjct: 17 QSRNFHNI------LQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTS 70
Query: 909 YLYDYPAGSYLFRLRVVSLGGEGPWTSWKPC--VIESAETPMSVYVIVVVTGLVILF 963
D Y R+R S G W+ E+ P + + V L+++
Sbjct: 71 ETSD-IQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVIL 126
Score = 35.1 bits (80), Expect = 0.068
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNIS 628
+ K ++ VE+ L P + Y +IY RS S
Sbjct: 160 LEKEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRS 203
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 39.7 bits (93), Expect = 3e-04
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 852 SLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR--DSGLY 909
L + +++ + W P P+ I Y I Y +G +GL
Sbjct: 7 DLQVTNVTDTSITVSWTP---PSATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGL- 62
Query: 910 LYDYPAGSYLFRLRVVSLGGEGP 932
P Y+ + + E P
Sbjct: 63 ---TPGVEYVVSVYALKDNQESP 82
Score = 31.6 bits (72), Expect = 0.24
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 640 PYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYD 680
P +V V +S+T+ W P + Y I Y +
Sbjct: 5 PTDLQVTNVTDTSITVSW---TPPSATITGYRI--TYTPSN 40
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 40.0 bits (94), Expect = 4e-04
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 13/91 (14%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGI-IVAYNIEYKRESGG-----NSENMCRTRKDI 902
L E + + ++W PP R I Y +EY E N E + R +
Sbjct: 11 APQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTV 70
Query: 903 DRDSGLYLYDYPAGSYLFRLRVVSLGGEGPW 933
L LFR+ V++ G
Sbjct: 71 ---KDLP----TGARILFRVVGVNIAGRSEP 94
Score = 35.8 bits (83), Expect = 0.011
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGI-LEKYVI 672
+ S P V V ++ TL+W P ++ Y++
Sbjct: 3 SGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLV 45
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 39.4 bits (92), Expect = 5e-04
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 18/108 (16%)
Query: 531 SNLALVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFK 590
L L + V + +Q Y++ A + +
Sbjct: 13 RALTLAAVTPRTVHLTWQ-----PSAGATHYLVRCSPASPK-------------GEEEER 54
Query: 591 DINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPS 638
++ V + LEP +Y V+ + T + PS
Sbjct: 55 EVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGPS 102
Score = 36.0 bits (83), Expect = 0.009
Identities = 11/96 (11%), Positives = 22/96 (22%), Gaps = 13/96 (13%)
Query: 845 ADTIPAD---SLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKD 901
+ P +L + + + W P + Y + S E +
Sbjct: 4 GSSGPLPPPRALTLAAVTPRTVHLTWQPSAGATH----YLVRCSPASPKGEEEEREVQVG 59
Query: 902 IDR--DSGLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
GL P Y ++ +
Sbjct: 60 RPEVLLDGL----EPGRDYEVSVQSLRGPEGSEARG 91
Score = 31.7 bits (72), Expect = 0.30
Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 8/52 (15%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
++ P P P + V +V L W Y++
Sbjct: 5 SSGPLPP--PRALTLAAVTPRTVHLTWQPSAGATH----YLV--RCSPASPK 48
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 39.7 bits (93), Expect = 5e-04
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD--- 905
P L F ++ A R+ W RP + + Y GG+S + +
Sbjct: 10 PPRHLGFSDVSHDAARVFWEGAPRP---VRLVRVTYVSSEGGHSGQT-----EAPGNATS 61
Query: 906 ---SGLYLYDYPAGSYLFRLRVVSLGGEGP 932
L + +Y R+ + GG
Sbjct: 62 AMLGPL----SSSTTYTVRVTCLYPGGGSS 87
Score = 34.3 bits (79), Expect = 0.038
Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 16/80 (20%)
Query: 630 QTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYL----- 684
+ P P V+ + + W + + + Y + +
Sbjct: 3 SGSSGLAP--PRHLGFSDVSHDAARVFW---EGAPRPVRLVRV--TYVSSEGGHSGQTEA 55
Query: 685 --DTRNYCVDKLRDLSDSTY 702
+ + + L S +TY
Sbjct: 56 PGNATSAMLGPLS--SSTTY 73
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 39.4 bits (92), Expect = 6e-04
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 5/50 (10%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYD 680
++ + P E V + L W P Y++ +
Sbjct: 2 SSGSSGLEAPRDLEAKEVTPRTALLTW---TEPPVRPAGYLL--SFHTPG 46
Score = 34.0 bits (78), Expect = 0.041
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 20/93 (21%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD--- 905
P D L + + + W P Y + + G E +
Sbjct: 11 PRD-LEAKEVTPRTALLTWTEPPVR---PAGYLLSFHTPGGQTQE------ILLPGGITS 60
Query: 906 ---SGLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
GL +P+ SY RL+ + P S
Sbjct: 61 HQLLGL----FPSTSYNARLQAMWGQSLLPPVS 89
Score = 31.7 bits (72), Expect = 0.28
Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 17/106 (16%)
Query: 535 LVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINS 594
L T + E P Y+L + + +
Sbjct: 14 LEAKEVTPRTALLTWTEPPVRPAG--YLLSFHTPG---------------GQTQEILLPG 56
Query: 595 KNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIP 640
+ +++ L P+T Y ++ Q ++ + TT + S P
Sbjct: 57 GITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRISGP 102
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 41.2 bits (96), Expect = 6e-04
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 859 NASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAGSY 918
N L+I W P P + + I Y M + L + D Y
Sbjct: 123 NIGLLKISWEKPVFPENNLQ-FQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPD-LCAVY 180
Query: 919 LFRLRVVSLGGEGPWTSW 936
++R L G G W++W
Sbjct: 181 AVQVRCKRLDGLGYWSNW 198
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 41.8 bits (97), Expect = 7e-04
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 14/94 (14%)
Query: 857 MINASALRIRWHPPSRPNGIIVAYNIEYKRESGGN------SENMCRTRKDIDRDSGLYL 910
+ L ++W P + Y +E E C +
Sbjct: 209 SFHNDDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSC 268
Query: 911 YD----YPAGSYLFRLRV----VSLGGEGPWTSW 936
+ P R+RV + + W++W
Sbjct: 269 FMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNW 302
Score = 33.3 bits (75), Expect = 0.36
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 7/99 (7%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGL 908
P +L+ + N + W+PP + ++ Y G + + L
Sbjct: 6 PVTNLSVSVENLCTVIWTWNPPEGASS---NCSLWYFSHFGDKQDKKIAPETRRSIEVPL 62
Query: 909 YLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETP 947
+ + E P + C+ P
Sbjct: 63 ----NERICLQVGSQCSTNESEKPSILVEKCISPPEGDP 97
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 41.9 bits (97), Expect = 7e-04
Identities = 60/424 (14%), Positives = 109/424 (25%), Gaps = 44/424 (10%)
Query: 535 LVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINS 594
L N I + + + L + D SC S
Sbjct: 9 LRCYNDYTSHITCRWADTQDAQRLVNVTLIRR-----VNEDLLEPVSCDLSDDMPWSACP 63
Query: 595 KNKTVEVMNLEPATEYAFFVKIYNS---QRIVRSNISLQTTLPTKPSIPYQFEVVRVNSS 651
+ V + P + Y S R + + +++ T +P P ++ +
Sbjct: 64 HPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQI-STDQD 122
Query: 652 SVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDKLRDLSDSTYAASHLMRFA 711
L W ++ K D+ L + S +T HLM +
Sbjct: 123 HFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSS 182
Query: 712 K-----TTRKPLKECCGKFPCDFDHESFQYMTSQMQLIQQCDNYIFKYLQYNDLHKAYGG 766
TR P + E + Q F
Sbjct: 183 TYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRK 242
Query: 767 DLPSLGNIS-----SRLPDREENDVLYPETSYTMVGLGHFRSIVFTISACRKEQKDKFLP 821
++ S + S + GLG + T C+ +P
Sbjct: 243 EVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGS----LHTRHHCQ-------IP 291
Query: 822 YDPEEGRCSEETLVMSRTEVD--HLADTIPAD--SLNFEMINASALRIRWHPPSRPNG-I 876
V R + I SL + + +RW I
Sbjct: 292 VPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQV-TKDGDSYSLRWETMKMRYEHI 350
Query: 877 IVAYNIEYKRESGGNSENMCRTRKDIDR--DSGLYLYDYPAGSYLFRLRVVSLGG--EGP 932
+ I+Y++++ ++ T ++ L P+ Y R+RV + G
Sbjct: 351 DHTFEIQYRKDTATWKDSKTETLQNAHSMALPAL----EPSTRYWARVRVRTSRTGYNGI 406
Query: 933 WTSW 936
W+ W
Sbjct: 407 WSEW 410
Score = 34.6 bits (78), Expect = 0.18
Identities = 19/161 (11%), Positives = 49/161 (30%), Gaps = 14/161 (8%)
Query: 817 DKFLPYDPEEGRCSEETLVMSRTEVDHLADTIPADSLNFEM-INASALRIRWHPPSRP-- 873
F+ D + + + +R V P + + ++ + + W
Sbjct: 77 QSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQ 136
Query: 874 ----NGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGG 929
+ + + + YKR + E+ + + + + P+ +Y+ R+R G
Sbjct: 137 SHWLSPGDLEFEVVYKRLQD-SWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPG 195
Query: 930 EGP------WTSWKPCVIESAETPMSVYVIVVVTGLVILFC 964
W+ + + + G +L C
Sbjct: 196 SRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSC 236
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 38.9 bits (91), Expect = 9e-04
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 858 INASALRIRWHPPSRPNG-IIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPAG 916
A +++RW PP G I Y++E + + + S L P
Sbjct: 21 PKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLL----PGK 76
Query: 917 SYLFRLRVVSLGGEGPW 933
+Y FRLR + G GP+
Sbjct: 77 TYSFRLRAANKMGFGPF 93
Score = 29.6 bits (67), Expect = 1.5
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 631 TTLPTKPSIPYQFEVV-RVNSSSVTLRWGEPKHPHG--ILEKYVI 672
+ P + R + + LRWG P G I Y +
Sbjct: 3 SGSSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISC-YSV 46
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 38.9 bits (91), Expect = 0.001
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 625 SNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVI 672
S + TTL +P IP + +S+TL+W P ++ +V+
Sbjct: 6 SGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVL 53
Score = 38.5 bits (90), Expect = 0.001
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 858 INASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKD-IDRDSGLYLYDYPAG 916
++L ++W PS I + +E+ G C + + L PA
Sbjct: 29 RTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKL----SPAM 84
Query: 917 SYLFRLRVVSLGGEGPW 933
FRL + G +
Sbjct: 85 GCKFRLSARNDYGTSGF 101
Score = 31.2 bits (71), Expect = 0.46
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 583 SASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
+G + K ++ L PA F + N
Sbjct: 59 KGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARND 95
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 38.7 bits (90), Expect = 0.001
Identities = 9/86 (10%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 852 SLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR--DSGLY 909
S++ + + + ++ I+ Y ++Y+ + + + + + D L
Sbjct: 13 SIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHL- 71
Query: 910 LYDYPAGSYLFRLRVVSLGGEGPWTS 935
Y ++ + G T
Sbjct: 72 ---QWTMGYEVQITAANRLGYSEPTV 94
Score = 30.6 bits (69), Expect = 0.90
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 587 WKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQ 620
W K + + + +L+ Y + N
Sbjct: 54 WLEKKVQGNKDHIILEHLQWTMGYEVQITAANRL 87
Score = 28.7 bits (64), Expect = 3.5
Identities = 9/79 (11%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 630 QTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYL----- 684
+ + P + S L + + +Y++K +D + +L
Sbjct: 1 EAEASMREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQ 60
Query: 685 -DTRNYCVDKLRDLSDSTY 702
+ + ++ L+ Y
Sbjct: 61 GNKDHIILEHLQ--WTMGY 77
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 37.9 bits (88), Expect = 0.002
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 17/91 (18%)
Query: 848 IPADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD-- 905
+ A S + I AS+ + W S + + +EY+ G+ D+
Sbjct: 7 LVATSESVTEITASSFVVSWVSASDT---VSGFRVEYELSEEGDE----PQYLDLPSTAT 59
Query: 906 ----SGLYLYDYPAGSYLFRLRVVSLGGEGP 932
L P Y+ + +S GE
Sbjct: 60 SVNIPDL----LPGRKYIVNVYQISEDGEQS 86
Score = 29.0 bits (65), Expect = 1.8
Identities = 4/36 (11%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 637 PSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVI 672
+ V + +SS + W + + +
Sbjct: 6 HLVATSESVTEITASSFVVSW---VSASDTVSGFRV 38
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 40.2 bits (93), Expect = 0.002
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGL 908
++L ++ S L + W+ + + + ++Y+ + + T + +D
Sbjct: 139 APENLTLHKLSESQLELNWNNRFLNHCLE--HLVQYRTDWDHS-----WTEQSVDYRHKF 191
Query: 909 YLYD-YPAGSYLFRLRV---VSLGGEGPWTSW 936
L Y FR+R G W+ W
Sbjct: 192 SLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEW 223
Score = 36.3 bits (83), Expect = 0.028
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 603 NLEPATEYAFFVKIYNSQRIVRSNI-SLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPK 661
E F V++ + + R L+ P P + +++ S + L W
Sbjct: 102 KKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF 161
Query: 662 HPHGILEKYVIKAYYQDYDKD 682
H + +++++ Y D+D
Sbjct: 162 LNHCL--EHLVQ-YRTDWDHS 179
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 37.8 bits (88), Expect = 0.002
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 9/86 (10%)
Query: 852 SLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR--DSGLY 909
++ I + + W PP P I + + R++ + E I + L
Sbjct: 7 NIKVTNITLTTAVVTWQPPILP---IEGILVTFGRKNDPSDETTVDLTSSITSLTLTNL- 62
Query: 910 LYDYPAGSYLFRLRVVSLGGEGPWTS 935
P +Y R+ + P S
Sbjct: 63 ---EPNTTYEIRIVARNGQQYSPPVS 85
Score = 31.2 bits (71), Expect = 0.35
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 640 PYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVI 672
P+ +V + ++ + W P P +E ++
Sbjct: 5 PFNIKVTNITLTTAVVTWQPPILP---IEGILV 34
Score = 30.8 bits (70), Expect = 0.50
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 19/108 (17%)
Query: 535 LVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINS 594
+ V N T + + ++ + + + S D+ S
Sbjct: 8 IKVTNITLTTAVVTWQPPILPIEG--ILVTFGRKN-------------DPSDETTVDLTS 52
Query: 595 KNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQ 642
++ + NLEP T Y + N Q+ S + TT T + +
Sbjct: 53 SITSLTLTNLEPNTTYEIRIVARNGQQ--YSP-PVSTTFTTGS-LEHH 96
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 38.0 bits (88), Expect = 0.002
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 7/90 (7%)
Query: 860 ASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYL--YDYPAGS 917
+ + W PP + Y +E ++ S G + L
Sbjct: 20 PRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWE----VLDPAVAGTETELLVPGLIKDVL 75
Query: 918 YLFRLRVVSLGGEGPWTSWKPCVIESAETP 947
Y FRL + S V S +
Sbjct: 76 YEFRLVAFAGSFVSDP-SNTANVSTSGLSG 104
Score = 33.8 bits (77), Expect = 0.062
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 634 PTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIK 673
+ P + V V L W P+ L+ YV++
Sbjct: 4 GSSGLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLE 43
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 38.1 bits (89), Expect = 0.002
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD--S 906
P + +++ + W P + AY IE +S NS
Sbjct: 18 PPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVR 77
Query: 907 GLYLYDYPAGSYLFRLRVVSLGGEGP 932
GL P YLF +R ++ G
Sbjct: 78 GL----RPNTIYLFMVRAINPQGLSD 99
Score = 35.8 bits (83), Expect = 0.013
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 628 SLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDK------ 681
L P P + +V V +SVTL W Y+I+A+ Q
Sbjct: 7 GKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVA 66
Query: 682 DYLDTRNYCVDKLR 695
+++ T Y V LR
Sbjct: 67 NHVKTTLYTVRGLR 80
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 37.4 bits (87), Expect = 0.002
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 13/84 (15%)
Query: 853 LNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS----GL 908
L F ++ +++I W P G + Y + Y G E D + D+ GL
Sbjct: 8 LAFTDVDVDSIKIAWESP---QGQVSRYRVTYSSPEDGIHELF--PAPDGEEDTAELQGL 62
Query: 909 YLYDYPAGSYLFRLRVVSLGGEGP 932
P Y + + E
Sbjct: 63 ----RPGSEYTVSVVALHDDMESQ 82
Score = 32.0 bits (73), Expect = 0.18
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVK-IY 617
RY + Y ++G++ F + + T E+ L P +EY V ++
Sbjct: 30 SRYRVTYSSPEDGIHELFPAP-------------DGEEDTAELQGLRPGSEYTVSVVALH 76
Query: 618 NSQRIVRSNISLQTTLP 634
+ + T +P
Sbjct: 77 DDMESQPLIGTQSTAIP 93
Score = 30.8 bits (70), Expect = 0.46
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 640 PYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYD 680
P V+ S+ + W + P G + +Y + Y +
Sbjct: 5 PKGLAFTDVDVDSIKIAW---ESPQGQVSRYRV--TYSSPE 40
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 38.4 bits (89), Expect = 0.002
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 581 SCSASGWKFKDINSKNKT-VEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKPS 638
S + K+K + +T + + +L+PA +Y V+ + S + TTL +P
Sbjct: 65 SSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD 124
Query: 639 IP 640
IP
Sbjct: 125 IP 126
Score = 38.0 bits (88), Expect = 0.003
Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 15/109 (13%)
Query: 839 TEVDHLADTIPA-DSLNFEMINASALRIRWHPPSRPNGI---------IVAYNIEYK-RE 887
E + I A + + W PPS + Y +
Sbjct: 9 EETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTG 68
Query: 888 SGGNSENMCRTRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSW 936
G +++ + + L PA Y +++ +G +
Sbjct: 69 KDGKYKSVYVGEETNITLNDLK----PAMDYHAKVQAEYNSIKGTPSEA 113
Score = 37.3 bits (86), Expect = 0.006
Identities = 7/56 (12%), Positives = 12/56 (21%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDT 686
S + + + +V L W P Y+ T
Sbjct: 12 KAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISST 67
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 39.3 bits (91), Expect = 0.003
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 12/90 (13%)
Query: 851 DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYL 910
S N + + + W P P + Y++EY+ E + +
Sbjct: 16 LSTNMKHL------LMWSPVIAPGETVY-YSVEYQGEYESLYTSHIWIPSSWCSLTEGPE 68
Query: 911 YD-----YPAGSYLFRLRVVSLGGEGPWTS 935
D Y R+R W+
Sbjct: 69 CDVTDDITATVPYNLRVRATLGSQTSAWSI 98
Score = 35.4 bits (81), Expect = 0.054
Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 16/107 (14%)
Query: 536 VVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSK 595
+ + K + +L E + +++ Y + + G + K + S
Sbjct: 115 MEITKDGFHLVIEL---EDLGPQFEFLVAYWRREPG-------------AEEHVKMVRSG 158
Query: 596 NKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPSIPYQ 642
V + +EP Y + + S S + +
Sbjct: 159 GIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAIEG 205
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 39.0 bits (90), Expect = 0.003
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGL 908
++L ++ S L + W+ + + + ++Y+ + + T + +D
Sbjct: 101 APENLTLHKLSESQLELNWNNRFLNHCLE--HLVQYRTDWDHS-----WTEQSVDYRHKF 153
Query: 909 YLYD-YPAGSYLFRLRV---VSLGGEGPWTSW 936
L Y FR+R G W+ W
Sbjct: 154 SLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEW 185
Score = 36.3 bits (83), Expect = 0.026
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 603 NLEPATEYAFFVKIYNSQRIVRSNI-SLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPK 661
E F V++ + + R L+ P P + +++ S + L W
Sbjct: 64 KKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF 123
Query: 662 HPHGILEKYVIKAYYQDYDKD 682
H + +++++ Y D+D
Sbjct: 124 LNHCL--EHLVQ-YRTDWDHS 141
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 37.0 bits (86), Expect = 0.003
Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 17/90 (18%)
Query: 852 SLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD------ 905
+ + + + I W PP + + + + Y + RT D+ D
Sbjct: 8 QIEVKDVTDTTALITWMPP---SQPVDGFELTYGIKDVPGD----RTTIDLTEDENQYSI 60
Query: 906 SGLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
L P Y L
Sbjct: 61 GNL----KPDTEYEVSLISRRGDMSSNPAK 86
Score = 33.9 bits (78), Expect = 0.041
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 636 KPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
+ P Q EV V ++ + W P ++ + + Y D
Sbjct: 2 RLDAPSQIEVKDVTDTTALITW---MPPSQPVDGFEL--TYGIKDVP 43
Score = 29.7 bits (67), Expect = 1.3
Identities = 12/82 (14%), Positives = 18/82 (21%), Gaps = 13/82 (15%)
Query: 560 RYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
+ L Y D D+ + NL+P TEY +
Sbjct: 32 GFELTYGIKDVP-------------GDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRG 78
Query: 620 QRIVRSNISLQTTLPTKPSIPY 641
TT +
Sbjct: 79 DMSSNPAKETFTTGLAAALEHH 100
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 37.0 bits (86), Expect = 0.004
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 848 IPA-DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR-- 904
+PA +L + +LR+ W P + ++ I+Y+
Sbjct: 2 LPAPKNLVVSEVTEDSLRLSWTAP---DAAFDSFMIQYQESEKVGEAINLTVPGSERSYD 58
Query: 905 DSGLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
+GL P Y + V G S
Sbjct: 59 LTGL----KPGTEYTVSIYGVKGGHRSNPLS 85
Score = 32.0 bits (73), Expect = 0.19
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 13/70 (18%)
Query: 640 PYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDK------ 693
P V V S+ L W P + ++I YQ+ +K + N V
Sbjct: 5 PKNLVVSEVTEDSLRLSW---TAPDAAFDSFMI--QYQESEKVG-EAINLTVPGSERSYD 58
Query: 694 LRDLS-DSTY 702
L L + Y
Sbjct: 59 LTGLKPGTEY 68
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 36.9 bits (86), Expect = 0.004
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRE-SGGNSENMCRTRKDIDRDSG 907
P L A+++ + W + + Y I+Y+ + G + + G
Sbjct: 10 PPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGG 67
Query: 908 LYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAETP 947
L P Y FR+ V+ G GP + P
Sbjct: 68 LS----PFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGP 103
Score = 33.8 bits (78), Expect = 0.043
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVI 672
++ + P P V ++SVTL W + Y I
Sbjct: 2 SSGSSGPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGI 41
Score = 31.1 bits (71), Expect = 0.42
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 583 SASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQ-RIVRSNIS-LQTTLPTKPS 638
G + + L P +EYAF V NS R S +T + PS
Sbjct: 47 GTEGPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGPS 104
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 37.0 bits (85), Expect = 0.004
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 635 TKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIK 673
+ + V ++++S+TL W + Y I
Sbjct: 6 SGAIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIH 44
Score = 35.0 bits (80), Expect = 0.021
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 853 LNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD 912
+ I+A++L + W + Y I E+ ++ N+ R I GL
Sbjct: 14 VTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSNLNVSEPRAVI---PGL---- 66
Query: 913 YPAGSYLFRLRVVSLGGEGPWTS 935
+ Y + V EG
Sbjct: 67 RSSTFYNITVCPVLGDIEGTPGF 89
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 36.8 bits (85), Expect = 0.006
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYD 680
+ +P + EVV +S+ + W P + Y I Y +
Sbjct: 23 YFQGSVSDVPTKLEVVAATPTSLLISW---DAPAVTVRYYRI--TYGETG 67
Score = 35.3 bits (81), Expect = 0.019
Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 11/103 (10%)
Query: 837 SRTEVDHLADTIPA--DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSEN 894
+ E + ++ L ++L I W P + Y I Y G +
Sbjct: 17 DKGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAP---AVTVRYYRITYGETGGNSPVQ 73
Query: 895 MCRTRKDIDR--DSGLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
SGL P Y + V+ S
Sbjct: 74 EFTVPGSKSTATISGL----KPGVDYTITVYAVTGLRLMLAGS 112
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 37.0 bits (86), Expect = 0.006
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 858 INASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS----GLYLYDY 913
+ A+ + W P N ++ Y +E + + + D S GL
Sbjct: 31 VERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLL--ASVDPKATSVTVKGL----V 84
Query: 914 PAGSYLFRLRVVSLGGEGPW 933
PA SY FRL V+ G+G +
Sbjct: 85 PARSYQFRLCAVNDVGKGQF 104
Score = 30.4 bits (69), Expect = 1.0
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 632 TLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVI 672
LP P P + V ++ L W +P + L +Y++
Sbjct: 16 QLPHAPEHP-VATLSTVERRAINLTWTKPFDGNSPLIRYIL 55
Score = 28.9 bits (65), Expect = 3.5
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 587 WKFKDINSKNKTVEVMNLEPATEYAFFVKIYN----SQRIVRSNISLQ-TTLPTKPS 638
++ K +V V L PA Y F + N Q S + + + + PS
Sbjct: 66 VLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQ---FSKDTERVSLPESGPS 119
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 36.5 bits (84), Expect = 0.007
Identities = 13/104 (12%), Positives = 25/104 (24%), Gaps = 7/104 (6%)
Query: 535 LVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINS 594
L V + T S+R ++L + + +
Sbjct: 15 LSVTDVTTSSLRLNWEAPP--GAFDSFLLRFGVPSPSTLEPHPRPLL-----QRELMVPG 67
Query: 595 KNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKPS 638
+ + +L T Y+ + S TL S
Sbjct: 68 TRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGPSS 111
Score = 31.1 bits (70), Expect = 0.52
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQD 678
++ Q V V +SS+ L W + P G + ++++
Sbjct: 5 SSGS--RPRLSQLSVTDVTTSSLRLNW---EAPPGAFDSFLLRFGVPS 47
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 36.0 bits (83), Expect = 0.010
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 637 PSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKD 682
+P EVV +S+ + W G + Y I Y + +
Sbjct: 4 SDVPRDLEVVAATPTSLLISW---DSGRGSYQYYRI--TYGETGGN 44
Score = 33.3 bits (76), Expect = 0.089
Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 12/103 (11%)
Query: 853 LNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDR--DSGLYL 910
L ++L I W G Y I Y G + + SGL
Sbjct: 10 LEVVAATPTSLLISWDSG---RGSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGL-- 64
Query: 911 YDYPAGSYLFRLRVV---SLGGEGPWTSWKPCVIESAETPMSV 950
P Y + V +GP T + + + T +
Sbjct: 65 --KPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDK 105
Score = 31.8 bits (72), Expect = 0.28
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 25/119 (21%)
Query: 535 LVVLNKTDVSIRFQLNENEKVPDN-QRYVLFYMKAD-NGMYTDFDTVGSCSASGWKFKDI 592
L V+ T S+ + + Q Y + Y + N +F G
Sbjct: 10 LEVVAATPTSLLISW---DSGRGSYQYYRITYGETGGNSPVQEFTVPGPVH--------- 57
Query: 593 NSKNKTVEVMNLEPATEYAFFVK-IYNSQRIVRSNISLQTT-----LPTKPSIPYQFEV 645
T + L+P +Y V + + + + + T+ P Q
Sbjct: 58 -----TATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQHHH 111
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 36.2 bits (84), Expect = 0.010
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGL 908
P +L I ++ +++ P I + +E + G E + +
Sbjct: 20 PPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDAR 79
Query: 909 YLYD---YPAGSYLFRLR 923
+ P Y FR+R
Sbjct: 80 SMEVPDLNPFTCYSFRMR 97
Score = 33.5 bits (77), Expect = 0.098
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVI 672
P P P + + SVTL++ + ++++
Sbjct: 12 GVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLV 53
Score = 29.2 bits (66), Expect = 2.2
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 573 YTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYN----SQRIVRSNIS 628
+++EV +L P T Y+F ++ N S S S
Sbjct: 55 AQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSP---PSQPS 111
Query: 629 LQ-TTLPTKPS 638
+ TL + PS
Sbjct: 112 RKIQTLQSGPS 122
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 35.8 bits (83), Expect = 0.011
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 858 INASALRIRWHPPSRPNGI-IVAYNIEYKRESGG-----NSENMCRTRKDIDRDSGLYLY 911
I + ++W P G I +Y +E + G N N+ + SGL
Sbjct: 22 ITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTV---SGL--- 75
Query: 912 DYPAGSYLFRLRVV-SLGGEGPW 933
+Y FR+ + G P
Sbjct: 76 -TEDAAYEFRVIAKNAAGAISPP 97
Score = 35.8 bits (83), Expect = 0.013
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 631 TTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHG--ILEKYVI 672
++ P P + + +VTL+W +P++ G I Y++
Sbjct: 8 SSPIDPPGKP---VPLNITRHTVTLKWAKPEYTGGFKIT-SYIV 47
Score = 28.5 bits (64), Expect = 4.7
Identities = 8/37 (21%), Positives = 10/37 (27%)
Query: 583 SASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
+ K N V L Y F V N+
Sbjct: 54 NGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNA 90
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 37.5 bits (87), Expect = 0.012
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 858 INASALRIRWHPPSRPNGI-IVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD-YPA 915
+S ++++ P G+ I+ Y E++ + K+ + + + P
Sbjct: 124 PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPE 183
Query: 916 GSYLFRLRVVSLGGEGPW 933
+Y RL ++ G G
Sbjct: 184 TTYAVRLAALNGKGLGEI 201
Score = 31.7 bits (72), Expect = 0.84
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 12/79 (15%)
Query: 559 QRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYN 618
+Y + ++ S W S V ++ L+P T YA + N
Sbjct: 145 LKYKAEWRAVGEEVWH----------SKWYDAKEASMEGIVTIVGLKPETTYAVRLAALN 194
Query: 619 SQRIVRSNISLQTTLPTKP 637
IS + T+P
Sbjct: 195 G--KGLGEISAASEFKTQP 211
Score = 29.8 bits (67), Expect = 3.2
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 634 PTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGI-LEKYVIKAYYQDYDKDYLDTRNYCVD 692
P+ PSI V SS+ +++ EP+ G+ + KY ++ ++ ++ Y
Sbjct: 114 PSSPSID----QVEPYSSTAQVQFDEPEATGGVPILKYKA--EWRAVGEEVWHSKWYDAK 167
Query: 693 KLRDLSDSTYAASHLM 708
+ L
Sbjct: 168 --EASMEGIVTIVGLK 181
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 37.5 bits (86), Expect = 0.013
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 840 EVDHLADTIPADSLNFEMINASA------LRIRWHPPSRPN----GIIVAYNIEYKRESG 889
VD + P +LN+ ++N S +++RW P + +++ Y ++YK
Sbjct: 124 SVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEV-- 181
Query: 890 GNSENMCRTRKDIDRDSGLYLYD-YPAGSYLFRLRVVSLGGEGPWTSW 936
N D + + +Y Y R+R G + +
Sbjct: 182 -NETKW--KMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNS-GNYGEF 225
Score = 28.6 bits (63), Expect = 9.2
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 3/84 (3%)
Query: 619 SQRIVRSNISLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQD 678
+ N L+T +P + + + W + H E + Y +
Sbjct: 15 PWSLQSVNPGLKTNSSGEPKF---TKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRR 71
Query: 679 YDKDYLDTRNYCVDKLRDLSDSTY 702
+++ C D + +S Y
Sbjct: 72 NTQEWTQEWKECPDYVSAGENSCY 95
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 36.3 bits (83), Expect = 0.027
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 17/116 (14%)
Query: 851 DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSE--NMCRTRKDIDRDSGL 908
+S+NF+ I ++W P+ G + + +Y + T D S L
Sbjct: 11 NSVNFKNI------LQWESPAFAKGQLT-FTAQYLSYRIFQDKCMQTTLTECDF---SSL 60
Query: 909 YLYDYPAGSYLFRLRVVSLGGEGPWTSWKPC-VIESAETPMSVYVIVVVTGLVILF 963
Y G + R+R W V ++ P + V V+ L + F
Sbjct: 61 SKY----GDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRF 112
Score = 30.9 bits (69), Expect = 1.6
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQTTLPTKP--SIP 640
+ I + + NLEP T Y V+ + R S T ++P
Sbjct: 143 GTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVP 200
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 36.3 bits (84), Expect = 0.035
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNG-IIVAYNIEYKRESGGNSENMCRTRKDIDRDSG 907
P + ++ ++ + W P+ G I Y +E + + + R+
Sbjct: 201 PPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVIN 260
Query: 908 LYLYDYPAGSYLFRLRVVSLGGEGP 932
L + SY FR+ + G
Sbjct: 261 L----FGKTSYQFRVIAENKFGLSK 281
Score = 34.3 bits (79), Expect = 0.17
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 636 KPSIPYQFEVVRVNSSSVTLRWGEPKHPHG-ILEKYVI 672
P P +V V+ SV L W EP G + Y++
Sbjct: 198 VPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIV 235
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 34.7 bits (80), Expect = 0.038
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 7/87 (8%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDS-- 906
P L ++++ W P N I + IEY+ +T + +
Sbjct: 19 PPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQ 78
Query: 907 -GLYLYDYPAGSYLFRLRVVSLGGEGP 932
L P +Y FR+ V+ G+
Sbjct: 79 LNL----SPYVNYSFRVMAVNSIGKSL 101
Score = 32.0 bits (73), Expect = 0.36
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 587 WKFKDINSKNKTVEVMNLEPATEYAFFVKIYN----SQRIVRSNISLQ-TTLPTKPSIP 640
W + S +T +NL P Y+F V N S S S Q T ++P
Sbjct: 64 WHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSL---PSEASEQYLTKASEPDKN 119
Score = 29.3 bits (66), Expect = 2.5
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 628 SLQTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHG--ILEKYVI 672
+ P+ P+ E+ SV L W P + I K++I
Sbjct: 8 PTPAPVYDVPNPPFDLELTDQLDKSVQLSW-TPGDDNNSPIT-KFII 52
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 35.5 bits (81), Expect = 0.045
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 851 DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD-SGLY 909
++ F I + W P + + Y + R + ++ + + + D + +
Sbjct: 14 EAEFFHHI------LHWTPIPQQSESTC-YEVALLRYGIESWNSISQCSQTLSYDLTAVT 66
Query: 910 LYDYPAGSYLFRLRVVSLGGEGPWT 934
L Y + Y R+R V WT
Sbjct: 67 LDLYHSNGYRARVRAVDGSRHSQWT 91
Score = 30.9 bits (69), Expect = 1.4
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNIS 628
+ F K++ ++ E+ VK + R + S
Sbjct: 155 GQFTFTHKKVKHEQFSLLTSGEVGEFCVQVKPSVASRSNKGMWS 198
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 35.7 bits (81), Expect = 0.050
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 9/85 (10%)
Query: 598 TVEVMNLEPATEYAFFVKIYNSQRIVRSNISL---------QTTLPTKPSIPYQFEVVRV 648
+ + + + I+ T+ + F+ +
Sbjct: 103 VLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEI 162
Query: 649 NSSSVTLRWGEPKHPHGILEKYVIK 673
N +VT+ W EP+ G+ + K
Sbjct: 163 NKKNVTVTWTEPETTEGLEGYILYK 187
Score = 30.7 bits (68), Expect = 1.9
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 586 GWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
G K +I + L T Y F + S
Sbjct: 189 GKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYS 222
Score = 29.9 bits (66), Expect = 3.2
Identities = 13/87 (14%), Positives = 19/87 (21%), Gaps = 9/87 (10%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGL 908
P IN + + W P G+ Y G + L
Sbjct: 153 PVRDFKASEINKKNVTVTWTEPETTEGL-----EGYILYKDGKKVAEIGKDETSYTFKKL 207
Query: 909 YLYDYPAGSYLFRLRVVSLGGEGPWTS 935
Y F++ GE
Sbjct: 208 ----NRHTIYNFKIAAKYSNGEVSSKE 230
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 35.6 bits (81), Expect = 0.074
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 857 MINASALRIRWHPP-SRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYDYPA 915
I + + I+W P S Y ++ G + + + ++ + + D
Sbjct: 230 EIEGTRMSIQWEKPVSAFPIHCFDYEVKIHNTRNGYLQ-----IEKLMTNAFISIID-DL 283
Query: 916 GSYLFRLRV---VSLGGEGPWTSW 936
Y ++R G W+ W
Sbjct: 284 SKYDVQVRAAVSSMCREAGLWSEW 307
Score = 32.9 bits (74), Expect = 0.51
Identities = 12/112 (10%), Positives = 32/112 (28%), Gaps = 10/112 (8%)
Query: 836 MSRTEVDHLADTIPADSLNFEMINASALRIRWHPPSR--PNGIIVAYNIEYKRESGGNSE 893
M+ D +P + ++ + + ++W P + + Y ++ + E
Sbjct: 1 MADLLPDEKISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYE 60
Query: 894 NMCRTRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSWKPCVIESAE 945
K + + S R + +SW + +
Sbjct: 61 TRITESKAVTILHMGF-------SASVRTI-LQNDHSLLASSWASAELHAPP 104
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 33.5 bits (77), Expect = 0.080
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 636 KPSIPYQFEVVRVNSSSVTLRWGEPKHPHG-ILEKYVI 672
+P P ++ V +V L W PK + Y I
Sbjct: 17 RPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTI 54
Score = 31.2 bits (71), Expect = 0.58
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 12/89 (13%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNG-IIVAYNIEYKRESGGN----SENMCRTRKDID 903
P + E + + + W PP I Y I+ + E+ RT I
Sbjct: 20 PPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATI- 78
Query: 904 RDSGLYLYDYPAGSYLFRLRVVSLGGEGP 932
+ L Y FR+ ++ G
Sbjct: 79 --TEL----VIGNEYYFRVFSENMCGLSE 101
Score = 29.6 bits (67), Expect = 1.8
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 585 SGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNSQRI-VRSNISLQTTLPTKPSIPY 641
W + + + L EY F V N + + ++ ++ + + Y
Sbjct: 62 MEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKIY 119
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP:
g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R
1d4v_A
Length = 130
Score = 33.5 bits (76), Expect = 0.092
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 326 RPFNGSCMEECPPGYNTTADETSCVPCPD 354
+ + CPPG++ + D C+ C
Sbjct: 18 QKRSSPSEGLCPPGHHISEDGRDCISCKY 46
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 34.3 bits (78), Expect = 0.13
Identities = 23/128 (17%), Positives = 39/128 (30%), Gaps = 14/128 (10%)
Query: 830 SEETLVMSRTEVDHLADTIPADSLNFEMINASALRIRWHPPS----RPNGIIVAYNIEYK 885
S+E V V A + L I+W PP+ + + Y I K
Sbjct: 90 SDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLK 149
Query: 886 RESGGNSENMCRTRKDIDRDSGLYLYD-YPAGSYLFRLRVVSLGGEGPWTSWKPCVIESA 944
E + + + +P YL ++R G W++W P
Sbjct: 150 PEKAAE-----WEIHFAGQQTEFKILSLHPGQKYLVQVRCKP--DHGYWSAWSPAT--FI 200
Query: 945 ETPMSVYV 952
+ P +
Sbjct: 201 QIPSDFTM 208
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 33.2 bits (75), Expect = 0.16
Identities = 26/137 (18%), Positives = 35/137 (25%), Gaps = 30/137 (21%)
Query: 233 ECHPLCAGG------CTGKRAEDCFVCI-GFIHDGHCLDQCPPNLQGQVATLQRILYGGI 285
C C G C+ + C C GF +D C P T + G
Sbjct: 17 RCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKP------CTWCNLRSGSE 70
Query: 286 RYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGYNTTAD 345
R T C + C CPPG+ + D
Sbjct: 71 RKQLCTATQDTVCRCRAGTQ----------------PLDSYKPGVDC-APCPPGHFSPGD 113
Query: 346 ETSCVPCPDCPKVCKGV 362
+C P +C K
Sbjct: 114 NQACKPWTNCTLAGKHT 130
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 33.9 bits (77), Expect = 0.18
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 859 NASALRIRWHPP-SRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRDSGLYLYD-YPAG 916
+ + +RW PP P + Y ++ G S + ++ + L +
Sbjct: 135 ESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRV---EILEGRTECVLSNLRGRT 191
Query: 917 SYLFRLRVVSLG--GEGPWTSWKPCVIESAETPMSV 950
Y F +R G W+ W S TP +
Sbjct: 192 RYTFAVRARMAEPSFGGFWSEWSE--PVSLLTPSDL 225
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 34.3 bits (77), Expect = 0.19
Identities = 12/102 (11%), Positives = 30/102 (29%), Gaps = 12/102 (11%)
Query: 840 EVDHLADTIPADSLNFEMINAS-ALRIRWHPPS----RPNGIIVAYNIEYKRESGGNSEN 894
+ + P +L + + S + + W P + + + ++ + +S
Sbjct: 206 FIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSK----- 260
Query: 895 MCRTRKDIDRDSGLYLYDYPAGSYLFRLRVVSLGGEGPWTSW 936
R +KD + +R W+ W
Sbjct: 261 --REKKDRVFTDKTSATVICRKNASISVRAQDRYYSSSWSEW 300
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 33.1 bits (75), Expect = 0.28
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 590 KDINSKNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNISLQ--TTLPTKPS 638
+ K + E L P TE+ + I S + TLP +
Sbjct: 160 MHLGGKQREYEFFGLTPDTEFLGTIMILVPTWAKESAPYMCRVKTLPDRTW 210
Score = 29.7 bits (66), Expect = 4.2
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 851 DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGN------SENMCRTRKDIDR 904
S NFE I + W V Y+IEYK + + + R ++
Sbjct: 14 QSSNFENI------LTWDSGPEGTPDTV-YSIEYKTYGERDWVAKKGCQRITRKSCNLTV 66
Query: 905 DSGLYLYDYPAGSYLFRLRVVSLGGEGPWTS 935
++G Y R+ VS GG
Sbjct: 67 ETG-----NLTELYYARVTAVSAGGRSATKM 92
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor
complex, cytokine, cytokine-cytokine recepto; 3.00A
{Homo sapiens}
Length = 173
Score = 32.9 bits (74), Expect = 0.30
Identities = 26/166 (15%), Positives = 37/166 (22%), Gaps = 36/166 (21%)
Query: 215 KCEFYWSNNDCQLIKEIEECHPLCAGG------CTGKRAEDCFVCIGFI------HDGHC 262
+ Y+ C C+ G CT C C C
Sbjct: 9 RLREYYDQTAQM-------CCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPEC 61
Query: 263 LDQCPPNLQGQV------ATLQRILYGGIRYSYMNRRCLTREECLNNKRVTTKNFPQNMR 316
L QV RI + + C ++
Sbjct: 62 LSCGSRCSSDQVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLRKCRPG------- 114
Query: 317 MSYSDKAKWRPFNGSCMEECPPGY--NTTADETSCVPCPDCPKVCK 360
+ + C + C PG NTT+ C P C V
Sbjct: 115 -FGVARPGTETSDVVC-KPCAPGTFSNTTSSTDICRPHQICNVVAI 158
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 31.8 bits (71), Expect = 0.34
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 17/91 (18%)
Query: 859 NASALRIRWHPPSRPNGIIVAYNIEYKRESGGN---------------SENMCRTRKDID 903
N + + W PP+ P+G I+ Y+ + + C
Sbjct: 19 NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQL 78
Query: 904 RDSGLYLYDYPAGSYLFRLRVVSLGGEGPWT 934
++ + PA +FR+ + G GP T
Sbjct: 79 ANAHIDYTSRPA--IVFRISAKNEKGYGPAT 107
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 29.6 bits (67), Expect = 0.38
Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 336 CPPGYNTTADETSCVPCPDCP--KVCKG 361
C GY D SCV P K +G
Sbjct: 23 CAHGYVLGDDSKSCVSTERFPCGKFTQG 50
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl,
rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP
signaling protein; 2.01A {Mus musculus} PDB: 3me2_R
3qbq_B 3nzy_B
Length = 216
Score = 32.5 bits (73), Expect = 0.45
Identities = 18/135 (13%), Positives = 34/135 (25%), Gaps = 12/135 (8%)
Query: 233 ECHPLCAGG------CTGKRAEDCFVCIG--FIHDGHCLDQCPPNLQGQVATLQRILYGG 284
C C G CT C C ++ + D+C + + G
Sbjct: 44 RCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNEEDKCLLHKVCDAGKALVAVDPG 103
Query: 285 IRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGY--NT 342
+ C ++ +N + + C C G+ +
Sbjct: 104 NHTAPRRCACTAGYHWNSDCECCRRNTECAP-GFGAQHPLQLNKDTVC-TPCLLGFFSDV 161
Query: 343 TADETSCVPCPDCPK 357
+ C P +C
Sbjct: 162 FSSTDKCKPWTNCTL 176
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 32.4 bits (73), Expect = 0.50
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 10/94 (10%)
Query: 853 LNFEMINASALRIRWHPP-SRPNGIIVA----YNIEYKRESGGNSENMCRTRKDIDRDSG 907
+ + + +I W P ++ Y ++Y+ + + R +D S
Sbjct: 105 FDVTVTFSGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSV 164
Query: 908 LYLYD--YPAGSYLFRLRVVSLGG---EGPWTSW 936
L SY ++R + G +G W+ W
Sbjct: 165 SLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEW 198
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member;
immune regulator, cytokine-cytokine receptor compl; HET:
NAG; 3.50A {Homo sapiens}
Length = 177
Score = 32.2 bits (72), Expect = 0.52
Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 11/134 (8%)
Query: 233 ECHPLCAGG------CTGKRAEDCFVCIG--FIHDGHCLDQCPPNLQGQVATLQRILYGG 284
+C LC G CT +C C F+ + C + R+ G
Sbjct: 16 QCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKG 75
Query: 285 IRYSYMNRRCLTREECLNNKRVTTKNFPQNMRMSYSDKAKWRPFNGSCMEECPPGY--NT 342
+ C C + + + + C E CP G+ N
Sbjct: 76 TSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTIC-EPCPVGFFSNV 134
Query: 343 TADETSCVPCPDCP 356
++ C P C
Sbjct: 135 SSAFEKCHPWTSCE 148
Score = 28.3 bits (62), Expect = 8.0
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 329 NGSCMEECPPGYNTTAD-----ETSCVPCPD 354
N C C PG +D ET C+PC +
Sbjct: 14 NSQCCSLCQPGQKLVSDCTEFTETECLPCGE 44
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 30.8 bits (70), Expect = 0.56
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 335 ECPPGYNTTADETSCVPCPDCP 356
C PGY D C P P
Sbjct: 78 SCAPGYKLGDDLLQCHPAVKFP 99
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 31.0 bits (70), Expect = 0.61
Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 17/96 (17%)
Query: 849 PADSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNSENMCRTRKDIDRD--- 905
P+ + + + W I +Y ++Y +G + D
Sbjct: 19 PSIREELCTASHDTITVHWISD--DEFSISSYELQYTIFTGQANFISLYNSVDSWMIVPN 76
Query: 906 --------SGLYLYDYPAGSYLFRLRVVSLGGEGPW 933
GL Y+F ++ ++ G
Sbjct: 77 IKQNHYTVHGL----QSGTRYIFIVKAINQAGSRNS 108
Score = 31.0 bits (70), Expect = 0.74
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 9/65 (13%)
Query: 632 TLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCV 691
T P PSI + E+ + ++T+ W I +Y Y +
Sbjct: 14 TAPNPPSI--REELCTASHDTITVHW-ISDDEFSIS------SYELQYTIFTGQANFISL 64
Query: 692 DKLRD 696
D
Sbjct: 65 YNSVD 69
Score = 29.5 bits (66), Expect = 2.0
Identities = 14/59 (23%), Positives = 15/59 (25%), Gaps = 4/59 (6%)
Query: 561 YVLFYMKADNGMYTDFDTVGSCSASGWKFKDINSKNKTVEVMNLEPATEYAFFVKIYNS 619
Y L Y W N K V L+ T Y F VK N
Sbjct: 48 YELQYTIFTGQANFISLYNSV---DSWMIVP-NIKQNHYTVHGLQSGTRYIFIVKAINQ 102
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 28.9 bits (65), Expect = 0.81
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 336 CPPGYNTTADETSCVPCPDCP 356
C GY + +C+P P
Sbjct: 26 CARGYTLADNGKACIPTGPYP 46
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 28.5 bits (64), Expect = 1.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 336 CPPGYNTTADETSCVPCPDCP 356
C GY+ AD SC P + P
Sbjct: 25 CHEGYSLLADGVSCTPTVEYP 45
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 28.2 bits (63), Expect = 1.6
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 336 CPPGYNTTADETSCVPCPDCP 356
C GY ++ SC P P
Sbjct: 25 CTEGYRLAENQKSCEPAVPFP 45
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 30.8 bits (69), Expect = 1.8
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 18/91 (19%)
Query: 851 DSLNFEMINASALRIRWHPPSRPNGIIVAYNIEYKRESGGNS-------ENMCRTRKDID 903
S NF + + W P + Y + Y+ +
Sbjct: 15 LSQNFSVY------LTWLPGLGNPQDVT-YFVAYQSSPTRRRWREVEECAGTKELLCSMM 67
Query: 904 RDSGLYLYDYPAGSYLFRLRVVSLGGEGPWT 934
LY + R+R VS + PW
Sbjct: 68 CLKKQDLY----NKFKGRVRTVSPSSKSPWV 94
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic
antibody, FAB fragment, antibody-receptor complex,
cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo
sapiens} PDB: 3thm_F*
Length = 156
Score = 30.1 bits (67), Expect = 2.0
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 329 NGSCMEECPPGY------NTTADETSCVPCPD 354
C + CPPG DE CVPC +
Sbjct: 40 GQFCHKPCPPGERKARDCTVNGDEPDCVPCQE 71
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A
2l5n_A
Length = 90
Score = 28.4 bits (63), Expect = 2.8
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 630 QTTLPTKPSIPYQFEVVRVNSSSVTLRWGEPKHPH 664
+ K ++V ++ VTL+ H H
Sbjct: 56 EHDYEVKVEPIPNIKIVEISPRVVTLQLEHHHHHH 90
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR
superfamily, viral protein; HET: NAG; 2.65A {Human
herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Length = 167
Score = 29.7 bits (66), Expect = 2.9
Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 5/31 (16%)
Query: 329 NGSCMEECPPGY-----NTTADETSCVPCPD 354
C +C PGY T C PCP
Sbjct: 12 GSECCPKCSPGYRVKEACGELTGTVCEPCPP 42
Score = 28.2 bits (62), Expect = 7.9
Identities = 24/140 (17%), Positives = 34/140 (24%), Gaps = 13/140 (9%)
Query: 233 ECHPLCAGG------CTGKRAEDCFVCIG--FIHDGHCLDQCPPNLQGQVATLQRILYGG 284
EC P C+ G C C C +I + L +C A R
Sbjct: 14 ECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNC 73
Query: 285 IRYSYMNRRCLTREECLNNKRVTTKNFPQNMRM---SYSDKAKWRPFNGSCMEECPPG-Y 340
R C C+ K + C + CPPG +
Sbjct: 74 SRTENAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLC-QNCPPGTF 132
Query: 341 NTTADETSCVPCPDCPKVCK 360
+ C C +
Sbjct: 133 SPNGTLEECQHQTKCSWLVT 152
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 27.8 bits (62), Expect = 3.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 336 CPPGYNTTADETSCVPCPDCP 356
C GY+ AD SC P + P
Sbjct: 31 CHEGYSLLADGVSCTPTVEYP 51
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 29.2 bits (66), Expect = 3.7
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 335 ECPPGYNTTADETSCVPCPDCP 356
C GY+ AD SC P + P
Sbjct: 113 RCHEGYSLLADGVSCTPTVEYP 134
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A
{Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A
1fca_A 1clf_A 1dur_A
Length = 55
Score = 27.2 bits (61), Expect = 3.9
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 330 GSCMEECP-----PGYNT-TADETSCVPCPDCPKVC 359
G+C ECP G + D +C+ C C VC
Sbjct: 12 GACEPECPVNAISSGDDRYVIDADTCIDCGACAGVC 47
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 28.9 bits (65), Expect = 3.9
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 335 ECPPGYNTTADETSCVPCPDCP 356
EC +T C+
Sbjct: 27 ECSSESTLDPTKTICIETIKGT 48
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A
{Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Length = 240
Score = 29.4 bits (65), Expect = 4.8
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 880 YNIEYKRESGGNSEN---MCRTRKDIDRDSGLYLYDYPAGSYL 919
+NI Y + S G + N + SG D +
Sbjct: 30 FNIWYNKWSQGFAGNTRFVSPFALQPQLHSGKTRGDNDGQLFF 72
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 28.4 bits (64), Expect = 4.9
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 329 NGSCMEE-------CPPGYNTTADETSCVPCPDCP 356
+ C EE C GY + +C+P P
Sbjct: 92 DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 126
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 29.8 bits (66), Expect = 5.0
Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 7/59 (11%)
Query: 220 WSNNDCQLIKEIEECHPLCAGGCTGKRAEDC-FVCIGFIHDGHCLD----QCPPNLQGQ 273
WS I + C + C + + G C + CP G
Sbjct: 338 WSPGSYLPIPKGAANA--CIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGI 394
>2w25_A Probable transcriptional regulatory protein; transcription
regulation, mutant, RV3291C, Glu104Ala, DNA-binding;
2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A*
2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A
2qz8_A
Length = 150
Score = 28.7 bits (65), Expect = 5.3
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 88 FVQINLIDNSTAQDFENITFPKLREITEYLSFYHVSG 124
FV I +D S D +L I E S Y V+G
Sbjct: 70 FVAITPLDPSQPDDAPA----RLEHIEEVESCYSVAG 102
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 29.0 bits (64), Expect = 5.9
Identities = 15/113 (13%), Positives = 28/113 (24%), Gaps = 8/113 (7%)
Query: 600 EVMNLEPATEYAFFVKIYNSQRIVRSNI-SLQTTLPTKPSIPYQFEVVRVNSSSVTLRWG 658
+ L V R I + + P +VV V + + W
Sbjct: 68 DSQKLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWE 127
Query: 659 EPKHPHGILEKYVIKAYYQDYDKDYLDTRNYCVDK------LRDL-SDSTYAA 704
+ H +A + + + + L L D+ Y
Sbjct: 128 ISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEF 180
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 29.0 bits (65), Expect = 6.4
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 329 NGSCMEE-------CPPGYNTTADETSCVPCPDCP 356
+ C EE C GY + +C+P P
Sbjct: 92 DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 126
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich
domain, TNF receptor, structural genomics, PSI protein
structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Length = 134
Score = 28.1 bits (62), Expect = 6.8
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 329 NGSCMEECPPGYNTTAD-----ETSCVPCPDC 355
C +C PGY T C PCP
Sbjct: 14 GSECCPKCSPGYRVKEACGELTGTVCEPCPPG 45
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
biotin, glutamate fermentation, lyase; HET: COO; 1.75A
{Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Length = 588
Score = 29.3 bits (66), Expect = 7.0
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 17/76 (22%)
Query: 470 SNLPDGQRPKFEIKKGKILFHDNPKLCLDKIYELINV-TNITYD-----------SDFDV 517
S LP F + P+L + +Y +I + YD S+F
Sbjct: 287 SYLPAYNLEFFRVDTP-----KAPQLPAEDLYSIIPMNQKRPYDIYEVIARLFDNSEFSE 341
Query: 518 LKESNGDEFICGFSNL 533
K+ G E + G + +
Sbjct: 342 YKKGYGPEMVTGLAKV 357
>3ea6_A Staphylococcal enterotoxin K; superantigen; 0.92A {Staphylococcus
aureus} PDB: 2ntt_A 2nts_A 2g9h_D*
Length = 219
Score = 28.6 bits (63), Expect = 7.9
Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 8/106 (7%)
Query: 536 VVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASG-WKFKDINS 594
V + DV +R L E + + Y S G F N+
Sbjct: 120 VTAQEIDVKLRKYLQEEYNIYGHNG------TKKGEEYGHKSKFYSGFNIGKVTFHLNNN 173
Query: 595 KNKTVEVMNLEPATEYAFFVKIYNSQRIVRS-NISLQTTLPTKPSI 639
+ ++ F+KIY + V S L + K +I
Sbjct: 174 DTFSYDLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKETI 219
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 28.1 bits (63), Expect = 8.4
Identities = 9/36 (25%), Positives = 10/36 (27%), Gaps = 8/36 (22%)
Query: 329 NGSCMEE--------CPPGYNTTADETSCVPCPDCP 356
C C GY D+ SC P P
Sbjct: 96 KQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFP 131
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 28.9 bits (64), Expect = 9.2
Identities = 11/33 (33%), Positives = 11/33 (33%), Gaps = 6/33 (18%)
Query: 329 NGSCMEECPPGYNTTADETSCVPCPDCPKVCKG 361
C EC GY C CP CP C
Sbjct: 576 CNVC--ECHSGYQLP----LCQECPGCPSPCGK 602
>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex,
fibronectin type-III, immune system; 2.04A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I
Length = 229
Score = 28.6 bits (63), Expect = 9.5
Identities = 11/94 (11%), Positives = 26/94 (27%), Gaps = 4/94 (4%)
Query: 535 LVVLNKTDVSIRFQLNENEKVPDNQRYVLFYMKADNGMYTDFDTVGSCSASGWKFKDINS 594
++ + V + E + P+ Y+ Y N + K D +
Sbjct: 125 MIDIFHPSVFVNGDEQEVDYDPETTCYIRVY----NVYVRMNGSEIQYKILTQKEDDCDE 180
Query: 595 KNKTVEVMNLEPATEYAFFVKIYNSQRIVRSNIS 628
+ + ++Y + V + S
Sbjct: 181 IQCQLAIPVSSLNSQYCVSAEGVLHVWGVTTEKS 214
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.422
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,012,317
Number of extensions: 914424
Number of successful extensions: 3160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2667
Number of HSP's successfully gapped: 498
Length of query: 976
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 873
Effective length of database: 3,825,930
Effective search space: 3340036890
Effective search space used: 3340036890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)