BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2194
         (92 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X9I|A Chain A, Structure Of The Mutant D105n Of Phycoerythrobilin
           Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
           Bound Substrate Biliverdin Ixa
 pdb|2X9I|B Chain B, Structure Of The Mutant D105n Of Phycoerythrobilin
           Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
           Bound Substrate Biliverdin Ixa
 pdb|2X9I|C Chain C, Structure Of The Mutant D105n Of Phycoerythrobilin
           Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
           Bound Substrate Biliverdin Ixa
 pdb|2X9I|D Chain D, Structure Of The Mutant D105n Of Phycoerythrobilin
           Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
           Bound Substrate Biliverdin Ixa
          Length = 233

 Score = 26.6 bits (57), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 31  QEIYRRLIYPSLIA----LGKNKKRFIDKKNAITFHLVHRSQKDPLLVD 75
            +IY  ++YP   A     G N  +F DKK  I F   H  +K    VD
Sbjct: 84  SDIYNTILYPKTGADLPCFGMNLMKFSDKKVIIVFDFQHPREKYLFSVD 132


>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7-
           Methyl-Gdp
          Length = 177

 Score = 26.6 bits (57), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 5/33 (15%)

Query: 43  IALGKNKKRFIDKKNAITFHLVH----RSQKDP 71
           I++GK  K F+D K++I F +VH    RS K P
Sbjct: 140 ISIGKQWKEFLDYKDSIGF-IVHEDAKRSDKGP 171


>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e
           From Wheat
 pdb|2IDR|B Chain B, Crystal Structure Of Translation Initiation Factor Eif4e
           From Wheat
          Length = 177

 Score = 26.6 bits (57), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 5/33 (15%)

Query: 43  IALGKNKKRFIDKKNAITFHLVH----RSQKDP 71
           I++GK  K F+D K++I F +VH    RS K P
Sbjct: 140 ISIGKQWKEFLDYKDSIGF-IVHEDAKRSDKGP 171


>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
           Complex With Ferritin H Ire Rna
 pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
           Complex With Ferritin H Ire Rna
 pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
           Complex With Transferrin Receptor Ire B Rna
          Length = 908

 Score = 25.4 bits (54), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 32  EIYRRLIYPSLIALGKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQ-HVQMALKTIT 90
           E Y R+   +L+ +G     ++  +NA +  L  R +   ++ +   P+ HVQ+ L T  
Sbjct: 817 ESYERIHRSNLVGMGVIPLEYLPGENADSLGLTGRERYTIIIPENLTPRMHVQVKLDTGK 876

Query: 91  LF 92
            F
Sbjct: 877 TF 878


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,637,458
Number of Sequences: 62578
Number of extensions: 89912
Number of successful extensions: 158
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 5
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)