BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2194
(92 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5U3J8|LTV1_DANRE Protein LTV1 homolog OS=Danio rerio GN=ltv1 PE=2 SV=1
Length = 469
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 32/36 (88%)
Query: 47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
+ KK FI+KKNA++FHLVHRSQKDPL DETAPQHV
Sbjct: 4 RKKKSFINKKNAVSFHLVHRSQKDPLAADETAPQHV 39
>sp|Q4V838|LTV1_XENLA Protein LTV1 homolog OS=Xenopus laevis GN=ltv1 PE=2 SV=1
Length = 469
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
+ KK FI+ K A+TFHLVHRSQ+DPL DETAPQ V
Sbjct: 4 RKKKPFIENKKAVTFHLVHRSQRDPLAADETAPQRV 39
>sp|Q7KN79|LTV1_DROME Protein LTV1 homolog OS=Drosophila melanogaster GN=CG7686 PE=1
SV=1
Length = 493
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHV 82
K KK +ID+K A+TFHLVHRSQ DPL+ DE APQ V
Sbjct: 3 KGKKPYIDRKKAVTFHLVHRSQHDPLVTDENAPQRV 38
>sp|Q10191|LTV1_SCHPO Protein LTV1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=ltv1 PE=1 SV=1
Length = 386
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 49 KKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKTI 89
KK+F++K A TFHLVHRSQ+DP DE A + V ++ +T+
Sbjct: 3 KKKFVNKNKAQTFHLVHRSQRDPQYHDENATERVLVSAETL 43
>sp|Q6NSQ7|LTV1_MOUSE Protein LTV1 homolog OS=Mus musculus GN=Ltv1 PE=2 SV=2
Length = 470
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 58 AITFHLVHRSQKDPLLVDETAPQHV 82
A++FHLVHRSQ+DPL DETAPQ V
Sbjct: 15 AVSFHLVHRSQRDPLAADETAPQRV 39
>sp|Q0VC06|LTV1_BOVIN Protein LTV1 homolog OS=Bos taurus GN=LTV1 PE=2 SV=1
Length = 475
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 58 AITFHLVHRSQKDPLLVDETAPQHVQMALKTI 89
A++FHLVHRSQ+DPL DETAPQ V + + I
Sbjct: 15 AVSFHLVHRSQRDPLAADETAPQRVLLPTQKI 46
>sp|Q5R8B2|LTV1_PONAB Protein LTV1 homolog OS=Pongo abelii GN=LTV1 PE=2 SV=1
Length = 475
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 58 AITFHLVHRSQKDPLLVDETAPQHVQMALKTI 89
A++FHLVHRSQ+DPL DE+APQ V + + I
Sbjct: 15 AVSFHLVHRSQRDPLAADESAPQRVLLPTQKI 46
>sp|Q96GA3|LTV1_HUMAN Protein LTV1 homolog OS=Homo sapiens GN=LTV1 PE=1 SV=1
Length = 475
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 58 AITFHLVHRSQKDPLLVDETAPQHVQMALKTI 89
A++FHLVHRSQ+DPL DE+APQ V + + I
Sbjct: 15 AVSFHLVHRSQRDPLAADESAPQRVLLPTQKI 46
>sp|Q68FR7|LTV1_RAT Protein LTV1 homolog OS=Rattus norvegicus GN=Ltv1 PE=2 SV=1
Length = 470
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 58 AITFHLVHRSQKDPLLVDETAPQHV 82
A++FHLVHRSQ+DPL DETAPQ V
Sbjct: 15 AVSFHLVHRSQRDPLAADETAPQRV 39
>sp|B1Y3E6|RHAM_LEPCP L-rhamnose mutarotase OS=Leptothrix cholodnii (strain ATCC 51168
/ LMG 8142 / SP-6) GN=rhaM PE=3 SV=1
Length = 106
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 25 PGSPDEQEIYRRLIYPSLIALGKNK-----KRFIDKKNAITFHLVHRSQKDPLLVDETAP 79
PG E ++ I+P L+AL KN F+D+ + F ++ RS P +T P
Sbjct: 14 PGCEAEYQLRHDRIWPELVALLKNSGVSDYSIFLDEPRGVLFAVLSRS---PGHTMQTLP 70
Query: 80 QHVQM 84
QH M
Sbjct: 71 QHPVM 75
>sp|Q801M1|CNR1_XENLA Cannabinoid receptor 1 OS=Xenopus laevis GN=cnr1 PE=2 SV=1
Length = 470
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 36 RLIYPSLIALGKNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMAL 86
R I L+ LG N+ ++ D K I+ LV+ QK PL P H +M +
Sbjct: 14 RTITTDLLYLGPNEVQYDDSKGDISSKLVYFPQKLPLSSLRGDPLHEKMTI 64
>sp|A0AIV3|SYA_LISW6 Alanine--tRNA ligase OS=Listeria welshimeri serovar 6b (strain ATCC
35897 / DSM 20650 / SLCC5334) GN=alaS PE=3 SV=1
Length = 879
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 27 SPDEQEIYRRLIYPSLIALGKNKKRFIDK-------KNAITFHLVHRSQKDPL 72
+P++Q ++R + ++ G K +DK KN HL+HR+ KD L
Sbjct: 528 APNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHLLHRALKDTL 580
>sp|Q8Y722|SYA_LISMO Alanine--tRNA ligase OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=alaS PE=3 SV=1
Length = 879
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 27 SPDEQEIYRRLIYPSLIALGKNKKRFIDK-------KNAITFHLVHRSQKDPL 72
+P++Q ++R + ++ G K +DK KN HL+HR+ KD L
Sbjct: 528 APNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHLLHRALKDTL 580
>sp|Q71ZG6|SYA_LISMF Alanine--tRNA ligase OS=Listeria monocytogenes serotype 4b (strain
F2365) GN=alaS PE=3 SV=1
Length = 879
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 27 SPDEQEIYRRLIYPSLIALGKNKKRFIDK-------KNAITFHLVHRSQKDPL 72
+P++Q ++R + ++ G K +DK KN HL+HR+ KD L
Sbjct: 528 APNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHLLHRALKDTL 580
>sp|Q92BK9|SYA_LISIN Alanine--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=alaS PE=3 SV=1
Length = 879
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 27 SPDEQEIYRRLIYPSLIALGKNKKRFIDK-------KNAITFHLVHRSQKDPL 72
+P++Q ++R + ++ G K +DK KN HL+HR+ KD L
Sbjct: 528 APNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHLLHRALKDTL 580
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,874,670
Number of Sequences: 539616
Number of extensions: 1197919
Number of successful extensions: 2274
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2264
Number of HSP's gapped (non-prelim): 16
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)