Query psy2194
Match_columns 92
No_of_seqs 106 out of 120
Neff 2.4
Searched_HMMs 46136
Date Fri Aug 16 18:38:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04180 LTV: Low temperature 99.7 4E-18 8.7E-23 136.9 4.0 35 54-88 1-35 (421)
2 KOG2637|consensus 99.6 8.3E-17 1.8E-21 134.0 2.1 42 47-88 1-42 (446)
3 PF07635 PSCyt1: Planctomycete 61.5 6.8 0.00015 23.8 1.8 25 23-47 32-58 (59)
4 COG5030 APS2 Clathrin adaptor 56.6 18 0.00038 27.6 3.6 53 12-67 3-61 (152)
5 TIGR03806 chp_HNE_0200 conserv 38.6 21 0.00045 28.9 1.7 28 22-49 270-299 (317)
6 PF03529 TF_Otx: Otx1 transcri 38.1 12 0.00025 26.2 0.2 10 7-16 51-60 (88)
7 COG4295 Uncharacterized protei 37.0 6.8 0.00015 32.1 -1.2 27 37-75 123-149 (285)
8 cd01802 AN1_N ubiquitin-like d 33.9 39 0.00085 22.7 2.2 24 44-67 1-24 (103)
9 PF10984 DUF2794: Protein of u 25.0 59 0.0013 22.4 1.9 20 55-74 32-51 (85)
10 PF14747 DUF4473: Domain of un 18.7 34 0.00073 22.2 -0.3 10 27-36 68-77 (82)
No 1
>PF04180 LTV: Low temperature viability protein ; InterPro: IPR007307 The low-temperature viability protein LTV1 was identified in Saccharomyces cerevisiae, the exact function of this protein is unknown.
Probab=99.71 E-value=4e-18 Score=136.93 Aligned_cols=35 Identities=66% Similarity=1.035 Sum_probs=33.6
Q ss_pred cCCCCeeEEEEeccCCCCCCCCCCCCCcEEEeccC
Q psy2194 54 DKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKT 88 (92)
Q Consensus 54 DKKnA~TFqLVHRSQ~DPL~~DedAsq~VLvPv~~ 88 (92)
|||||+|||||||||+|||+||++||+|||+|+..
T Consensus 1 dKK~a~tf~lVHRsq~DPl~~D~~A~~~VL~p~~~ 35 (421)
T PF04180_consen 1 DKKNAVTFQLVHRSQRDPLIADEDAPQHVLVPVDR 35 (421)
T ss_pred CCCcceEEEEeccCCCCccccCCCcccceeeeccC
Confidence 79999999999999999999999999999999953
No 2
>KOG2637|consensus
Probab=99.63 E-value=8.3e-17 Score=133.98 Aligned_cols=42 Identities=62% Similarity=0.858 Sum_probs=40.0
Q ss_pred CCCcccccCCCCeeEEEEeccCCCCCCCCCCCCCcEEEeccC
Q psy2194 47 KNKKRFIDKKNAITFHLVHRSQKDPLLVDETAPQHVQMALKT 88 (92)
Q Consensus 47 k~KKkFIDKKnA~TFqLVHRSQ~DPL~~DedAsq~VLvPv~~ 88 (92)
||||||||||+||||+||||||+||+++|++||+||+++.+.
T Consensus 1 ~gkKkfIdkKkAqtF~LVhRsq~DP~~~De~a~~r~~e~~ee 42 (446)
T KOG2637|consen 1 MGKKKFIDKKKAQTFHLVHRSQRDPLYHDENAPQRVLERAEE 42 (446)
T ss_pred CCccccccccccceeEeccCCCCCcccccCCcccchhhhhhh
Confidence 799999999999999999999999999999999999998753
No 3
>PF07635 PSCyt1: Planctomycete cytochrome C; InterPro: IPR011429 These proteins share a region of homology at their N terminus that contains the C-{CPWHF}-{CPWR}-C-H-{CFYW} motif typical of cytochrome c.
Probab=61.49 E-value=6.8 Score=23.81 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=20.2
Q ss_pred cCCCCCChHHHHHHhhc--ccccccCC
Q psy2194 23 YLPGSPDEQEIYRRLIY--PSLIALGK 47 (92)
Q Consensus 23 y~p~s~d~~~~y~~~~~--~~~im~~k 47 (92)
..||.++++..|+|+.. +...||.+
T Consensus 32 ivpG~~~~S~L~~~i~~~~~~~~MPP~ 58 (59)
T PF07635_consen 32 IVPGDPEESLLWQRITSQDDDGRMPPK 58 (59)
T ss_pred ecCCChHHhHHHHHHHccCCCCCCCcC
Confidence 46999999999999875 56777765
No 4
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=56.61 E-value=18 Score=27.55 Aligned_cols=53 Identities=30% Similarity=0.415 Sum_probs=42.0
Q ss_pred eeeEEeecccc------cCCCCCChHHHHHHhhcccccccCCCCcccccCCCCeeEEEEecc
Q psy2194 12 SYLLVENKPCR------YLPGSPDEQEIYRRLIYPSLIALGKNKKRFIDKKNAITFHLVHRS 67 (92)
Q Consensus 12 ~~~~~~~~~cr------y~p~s~d~~~~y~~~~~~~~im~~k~KKkFIDKKnA~TFqLVHRS 67 (92)
-|+|..||.|. |-|.|-+++.---+-||+......-+-..|++-|++ ++|.|-
T Consensus 3 ~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lIs~R~~ke~N~~e~k~~---kiVYrr 61 (152)
T COG5030 3 KFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKNE---KIVYRR 61 (152)
T ss_pred EEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHHHcCCchhcccccccCc---EEEeee
Confidence 36788888884 789999999888888899888766677789999987 566653
No 5
>TIGR03806 chp_HNE_0200 conserved hypothetical protein, HNE_0200 family. The model TIGR03805 describes an uncharacterized protein family that contains repeats associated with the formation of a right-handed helical stack of parallel beta strands, homologous to those found in a number of carbohydrate-binding proteins and sugar hydrolases. This model describes another uncharacterized protein family, found in the same species as TIGR03805 member proteins, usually as the adjacent gene or in a fusion protein. An example is HNE_0200 from Hyphomonas neptunium ATCC 15444. Sometimes two members of this family are with a single member of TIGR03805. The function is unknown.
Probab=38.56 E-value=21 Score=28.86 Aligned_cols=28 Identities=18% Similarity=0.390 Sum_probs=23.5
Q ss_pred ccCCCCCChHHHHHHhh--cccccccCCCC
Q psy2194 22 RYLPGSPDEQEIYRRLI--YPSLIALGKNK 49 (92)
Q Consensus 22 ry~p~s~d~~~~y~~~~--~~~~im~~k~K 49 (92)
.-.||.+++|..|.|+- -|...||..++
T Consensus 270 ~IvPGdpe~SiL~~R~~~~d~~~~MPp~G~ 299 (317)
T TIGR03806 270 DIVPGDPEKSILLYRMHSTEPGVRMPELGR 299 (317)
T ss_pred eecCCChhhChHHHHHhcCCccccCCcCCC
Confidence 46799999999999986 46789998776
No 6
>PF03529 TF_Otx: Otx1 transcription factor; InterPro: IPR013851 Otx proteins constitute a class of vertebrate homeodomain-containing transcription factors that have been shown to be essential for anterior head formation, including brain morphogenesis. They are orthologous to the product of the Drosophila head gap gene, orthodenticle (Otd), and appear to play similar roles in both, since the developmental abnormalities caused by disruption of these transcription factors in one, can be recovered by substitution of the factor(s) from the other. Such studies have provided strong evidence that there exists a conserved genetic programme for insect and mammalian brain development, which presumably arose in a more primitive common ancestor [, ]. Two vertebrate orthodenticle-related transcription factors have been indentified, Otx1 and Otx2, which have sizes of 355 and 289 residues respectively. They contain a bicoid-like homeodomain, which features a conserved lysine residue at position 9 of the DNA recognition helix, which is thought to confer high-affinity binding to TAATCC/T elements on DNA []. Otd-like transcription factors have also been found in zebrafish and certain lamprey species. This entry represents a conserved region found in the C-terminal region of these proteins.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0007275 multicellular organismal development, 0005634 nucleus
Probab=38.10 E-value=12 Score=26.18 Aligned_cols=10 Identities=60% Similarity=1.142 Sum_probs=8.4
Q ss_pred cccceeeeEE
Q psy2194 7 GIDCTSYLLV 16 (92)
Q Consensus 7 ~~~~~~~~~~ 16 (92)
|+||.+||--
T Consensus 51 g~DC~sYLsP 60 (88)
T PF03529_consen 51 GMDCGSYLSP 60 (88)
T ss_pred cccccccccc
Confidence 7899999953
No 7
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.04 E-value=6.8 Score=32.12 Aligned_cols=27 Identities=44% Similarity=0.685 Sum_probs=20.8
Q ss_pred hhcccccccCCCCcccccCCCCeeEEEEeccCCCCCCCC
Q psy2194 37 LIYPSLIALGKNKKRFIDKKNAITFHLVHRSQKDPLLVD 75 (92)
Q Consensus 37 ~~~~~~im~~k~KKkFIDKKnA~TFqLVHRSQ~DPL~~D 75 (92)
-+|||||.+ +..|-=|||-|+.|||.|
T Consensus 123 ~lY~sL~k~------------~eeyY~fhr~~~s~LYsD 149 (285)
T COG4295 123 SLYPSLIKY------------KEEYYEFHREQKSPLYSD 149 (285)
T ss_pred cchHhhhcc------------cHHHHHhhhhhcCccccc
Confidence 589999932 345667899999999865
No 8
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=33.91 E-value=39 Score=22.69 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.1
Q ss_pred ccCCCCcccccCCCCeeEEEEecc
Q psy2194 44 ALGKNKKRFIDKKNAITFHLVHRS 67 (92)
Q Consensus 44 m~~k~KKkFIDKKnA~TFqLVHRS 67 (92)
|..|+.-+||+-.|-+||+|+-|-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (103)
T cd01802 1 MANKKEPPFFNEDNMGPFHYKLPF 24 (103)
T ss_pred CCCccCCCccccCCcceeEEeecc
Confidence 345667799999999999999994
No 9
>PF10984 DUF2794: Protein of unknown function (DUF2794); InterPro: IPR021252 This is a bacterial family of proteins with unknown function.
Probab=25.05 E-value=59 Score=22.40 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=17.2
Q ss_pred CCCCeeEEEEeccCCCCCCC
Q psy2194 55 KKNAITFHLVHRSQKDPLLV 74 (92)
Q Consensus 55 KKnA~TFqLVHRSQ~DPL~~ 74 (92)
-++..+|++..|+..-|+|-
T Consensus 32 ~~~~A~Fsvfrr~~E~PlYr 51 (85)
T PF10984_consen 32 LRDRAVFSVFRRAAERPLYR 51 (85)
T ss_pred CCceEEEEEeeccCCCccEE
Confidence 35677999999999999985
No 10
>PF14747 DUF4473: Domain of unknown function (DUF4473)
Probab=18.71 E-value=34 Score=22.19 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=7.0
Q ss_pred CCChHHHHHH
Q psy2194 27 SPDEQEIYRR 36 (92)
Q Consensus 27 s~d~~~~y~~ 36 (92)
|++||++|..
T Consensus 68 s~~DQ~~y~~ 77 (82)
T PF14747_consen 68 SEEDQTAYNA 77 (82)
T ss_pred CHHHHHHHHH
Confidence 5577888844
Done!